BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11349
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F7K|A Chain A, Crystal Structure Of Human Pyridoxal Kinase
pdb|2F7K|B Chain B, Crystal Structure Of Human Pyridoxal Kinase
Length = 327
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/265 (43%), Positives = 173/265 (65%), Gaps = 22/265 (8%)
Query: 94 IQSVLERTAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLK 153
I+ + A +FP +VLGFE+DA+N+VQFSNH+GY H KG+V+ + EL EGL+
Sbjct: 30 IRGYVGNRAATFP----LQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLR 85
Query: 154 MNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN----GRMYVPE 209
+N++ Y +VLTGY R L+ + ++V+ELK+ NP L+YVCDPV+GD G MYVPE
Sbjct: 86 LNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPE 145
Query: 210 EVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSEL 269
++LP+Y +++ +AD+I PNQFEAELL+ I + L+ +++LH G TVVI+SS+L
Sbjct: 146 DLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDL 205
Query: 270 GPEKHLLGVASTVVGGSKT-----------TVSINIPQFDASFTGTGDLFAALMLAYITR 318
+ G +V GS+ + ++I + DA F GTGDLFAA++LA+ +
Sbjct: 206 PSPQ---GSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAMLLAWTHK 262
Query: 319 TNHNVKESLERTIATIQSVLERTAQ 343
+N+K + E+T++T+ VL+RT Q
Sbjct: 263 HPNNLKVACEKTVSTLHHVLQRTIQ 287
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 13/87 (14%)
Query: 17 LVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYI 76
L+V+ +Q +R+P+ E+ + ++I + DA F GTGDLFAA++LA+
Sbjct: 214 LIVLGSQ-RRRNPAGSVVMER------------IRMDIRKVDAVFVGTGDLFAAMLLAWT 260
Query: 77 TRTNHNVKESLERTIATIQSVLERTAQ 103
+ +N+K + E+T++T+ VL+RT Q
Sbjct: 261 HKHPNNLKVACEKTVSTLHHVLQRTIQ 287
>pdb|2AJP|A Chain A, Crystal Structure Of A Human Pyridoxal Kinase
pdb|2AJP|B Chain B, Crystal Structure Of A Human Pyridoxal Kinase
Length = 326
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/265 (43%), Positives = 173/265 (65%), Gaps = 22/265 (8%)
Query: 94 IQSVLERTAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLK 153
I+ + A +FP +VLGFE+DA+N+VQFSNH+GY H KG+V+ + EL EGL+
Sbjct: 29 IRGYVGNRAATFP----LQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLR 84
Query: 154 MNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN----GRMYVPE 209
+N++ Y +VLTGY R L+ + ++V+ELK+ NP L+YVCDPV+GD G MYVPE
Sbjct: 85 LNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPE 144
Query: 210 EVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSEL 269
++LP+Y +++ +AD+I PNQFEAELL+ I + L+ +++LH G TVVI+SS+L
Sbjct: 145 DLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDL 204
Query: 270 GPEKHLLGVASTVVGGSKT-----------TVSINIPQFDASFTGTGDLFAALMLAYITR 318
+ G +V GS+ + ++I + DA F GTGDLFAA++LA+ +
Sbjct: 205 PSPQ---GSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAMLLAWTHK 261
Query: 319 TNHNVKESLERTIATIQSVLERTAQ 343
+N+K + E+T++T+ VL+RT Q
Sbjct: 262 HPNNLKVACEKTVSTLHHVLQRTIQ 286
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 13/87 (14%)
Query: 17 LVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYI 76
L+V+ +Q +R+P+ E+ + ++I + DA F GTGDLFAA++LA+
Sbjct: 213 LIVLGSQ-RRRNPAGSVVMER------------IRMDIRKVDAVFVGTGDLFAAMLLAWT 259
Query: 77 TRTNHNVKESLERTIATIQSVLERTAQ 103
+ +N+K + E+T++T+ VL+RT Q
Sbjct: 260 HKHPNNLKVACEKTVSTLHHVLQRTIQ 286
>pdb|2YXT|A Chain A, Human Pyridoxal Kinase
pdb|2YXT|B Chain B, Human Pyridoxal Kinase
pdb|2YXU|A Chain A, Human Pyridoxal Kinase
pdb|2YXU|B Chain B, Human Pyridoxal Kinase
pdb|3KEU|A Chain A, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|3KEU|B Chain B, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|4EN4|A Chain A, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EN4|B Chain B, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EOH|A Chain A, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
pdb|4EOH|B Chain B, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
Length = 312
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/265 (43%), Positives = 173/265 (65%), Gaps = 22/265 (8%)
Query: 94 IQSVLERTAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLK 153
I+ + A +FP +VLGFE+DA+N+VQFSNH+GY H KG+V+ + EL EGL+
Sbjct: 15 IRGYVGNRAATFP----LQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLR 70
Query: 154 MNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN----GRMYVPE 209
+N++ Y +VLTGY R L+ + ++V+ELK+ NP L+YVCDPV+GD G MYVPE
Sbjct: 71 LNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPE 130
Query: 210 EVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSEL 269
++LP+Y +++ +AD+I PNQFEAELL+ I + L+ +++LH G TVVI+SS+L
Sbjct: 131 DLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDL 190
Query: 270 GPEKHLLGVASTVVGGSKT-----------TVSINIPQFDASFTGTGDLFAALMLAYITR 318
+ G +V GS+ + ++I + DA F GTGDLFAA++LA+ +
Sbjct: 191 PSPQ---GSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAMLLAWTHK 247
Query: 319 TNHNVKESLERTIATIQSVLERTAQ 343
+N+K + E+T++T+ VL+RT Q
Sbjct: 248 HPNNLKVACEKTVSTLHHVLQRTIQ 272
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 13/87 (14%)
Query: 17 LVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYI 76
L+V+ +Q +R+P+ E+ + ++I + DA F GTGDLFAA++LA+
Sbjct: 199 LIVLGSQ-RRRNPAGSVVMER------------IRMDIRKVDAVFVGTGDLFAAMLLAWT 245
Query: 77 TRTNHNVKESLERTIATIQSVLERTAQ 103
+ +N+K + E+T++T+ VL+RT Q
Sbjct: 246 HKHPNNLKVACEKTVSTLHHVLQRTIQ 272
>pdb|3FHY|A Chain A, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
pdb|3FHY|B Chain B, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 113/265 (42%), Positives = 173/265 (65%), Gaps = 22/265 (8%)
Query: 94 IQSVLERTAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLK 153
I+ + A +FP +VLGFE+DA+N+VQFSNH+GY H KG+V+ + EL EGL+
Sbjct: 15 IRGYVGNRAATFP----LQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLR 70
Query: 154 MNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN----GRMYVPE 209
+N++ Y +VLTGY R L+ + ++V+ELK+ NP L+YVCDPV+GD G MYVPE
Sbjct: 71 LNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPE 130
Query: 210 EVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSEL 269
++LP+Y +++ +AD+I PNQFEAELL+ I + L+ +++LH G TVVI+SS+L
Sbjct: 131 DLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDL 190
Query: 270 GPEKHLLGVASTVVGGSKT-----------TVSINIPQFDASFTGTGDLFAALMLAYITR 318
+ G +V GS+ + ++I + DA F GTG+LFAA++LA+ +
Sbjct: 191 PSPQ---GSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGNLFAAMLLAWTHK 247
Query: 319 TNHNVKESLERTIATIQSVLERTAQ 343
+N+K + E+T++T+ VL+RT Q
Sbjct: 248 HPNNLKVACEKTVSTLHHVLQRTIQ 272
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 13/87 (14%)
Query: 17 LVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYI 76
L+V+ +Q +R+P+ E+ + ++I + DA F GTG+LFAA++LA+
Sbjct: 199 LIVLGSQ-RRRNPAGSVVMER------------IRMDIRKVDAVFVGTGNLFAAMLLAWT 245
Query: 77 TRTNHNVKESLERTIATIQSVLERTAQ 103
+ +N+K + E+T++T+ VL+RT Q
Sbjct: 246 HKHPNNLKVACEKTVSTLHHVLQRTIQ 272
>pdb|3FHX|A Chain A, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
pdb|3FHX|B Chain B, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/265 (42%), Positives = 172/265 (64%), Gaps = 22/265 (8%)
Query: 94 IQSVLERTAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLK 153
I+ + A +FP +VLGFE+DA+N+VQFSNH+GY H KG+V+ + EL EGL+
Sbjct: 15 IRGYVGNRAATFP----LQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLR 70
Query: 154 MNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN----GRMYVPE 209
+N++ Y +VLTGY R L+ + ++V+ELK+ NP L+YVCDPV+GD G MYVPE
Sbjct: 71 LNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPE 130
Query: 210 EVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSEL 269
++LP+Y +++ +AD+I PNQFEAELL+ I + L+ +++LH G TVVI+SS+L
Sbjct: 131 DLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDL 190
Query: 270 GPEKHLLGVASTVVGGSKT-----------TVSINIPQFDASFTGTGDLFAALMLAYITR 318
+ G +V GS+ + ++I + DA F GTG LFAA++LA+ +
Sbjct: 191 PSPQ---GSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGALFAAMLLAWTHK 247
Query: 319 TNHNVKESLERTIATIQSVLERTAQ 343
+N+K + E+T++T+ VL+RT Q
Sbjct: 248 HPNNLKVACEKTVSTLHHVLQRTIQ 272
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 13/87 (14%)
Query: 17 LVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYI 76
L+V+ +Q +R+P+ E+ + ++I + DA F GTG LFAA++LA+
Sbjct: 199 LIVLGSQ-RRRNPAGSVVMER------------IRMDIRKVDAVFVGTGALFAAMLLAWT 245
Query: 77 TRTNHNVKESLERTIATIQSVLERTAQ 103
+ +N+K + E+T++T+ VL+RT Q
Sbjct: 246 HKHPNNLKVACEKTVSTLHHVLQRTIQ 272
>pdb|1LHP|A Chain A, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHP|B Chain B, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHR|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1LHR|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1RFT|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Amp-
Pcp And Pyridoxamine
pdb|1RFU|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|C Chain C, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|D Chain D, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|E Chain E, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|F Chain F, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|G Chain G, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|H Chain H, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFV|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1RFV|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1YGJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YGK|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YHJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
Length = 312
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 21/271 (7%)
Query: 88 ERTIATIQSVLER-----TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITE 142
E + +IQS + R A +FP +VLGFEVDA+N+VQFSNH+GY H KG+V+
Sbjct: 4 ECRVLSIQSHVVRGYVGNRAATFP----LQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNS 59
Query: 143 QDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN 202
+ EL +GLK+N + Y +VLTGY R L+ + ++V+ELK+ NP L+YVCDPVMGD
Sbjct: 60 DELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQ 119
Query: 203 ----GRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRG 258
G MYVP+++LP+Y +++ VAD+I PNQFEAELLT I + L+ +++LH G
Sbjct: 120 RNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMG 179
Query: 259 IKTVVISSSE-LGPE--KHLLGVAST---VVGGSKTT--VSINIPQFDASFTGTGDLFAA 310
TVVI+SS L P +L+ + S GS T + + + + DA F GTGDLFAA
Sbjct: 180 PDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAA 239
Query: 311 LMLAYITRTNHNVKESLERTIATIQSVLERT 341
++LA+ + +N+K + E+T++ + VL+RT
Sbjct: 240 MLLAWTHKHPNNLKVACEKTVSAMHHVLQRT 270
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 37/52 (71%)
Query: 50 VSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERT 101
+ + + + DA F GTGDLFAA++LA+ + +N+K + E+T++ + VL+RT
Sbjct: 219 IRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRT 270
>pdb|3ZS7|A Chain A, Crystal Structure Of Pyridoxal Kinase From Trypanosoma
Brucei
Length = 300
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 164/280 (58%), Gaps = 20/280 (7%)
Query: 88 ERTIATIQSVLER-----TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITE 142
E+T+ +IQS + A +FP ++ GF+VD INTV SNHSGY ++G ++
Sbjct: 3 EKTVLSIQSFVTHGYVGNKAATFP----LQLHGFDVDGINTVCLSNHSGYPVIRGHRMSL 58
Query: 143 QDFDELIEGLKMNDLM-DYTHVLTGYCRSPQLLSKIGELVKELK----KANPTLMYVCDP 197
Q++DEL+EG++ N+ + +Y ++LTGY + ++ +I + +KE++ K + L ++CDP
Sbjct: 59 QEYDELMEGVRANNFLSNYRYILTGYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDP 118
Query: 198 VMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDR 257
VMGD+G MY +EVL Y EL+ +AD++ PN FEA LL+ + + D +S + + H+
Sbjct: 119 VMGDDGIMYCKKEVLDAY-RELVPLADIVTPNYFEASLLSGVTVNDLSSAILAADWFHNC 177
Query: 258 GIKTVVISSSELGPEKHLLGVASTVVGGSKTTV---SINIPQFDASFTGTGDLFAALMLA 314
G+ V+I S L +V GS+ V S +P + +TGTGD+FAA +LA
Sbjct: 178 GVAHVIIKSFREQENPTHLRFLYSVKEGSEAAVRRFSGVVPYHEGRYTGTGDVFAACLLA 237
Query: 315 YITRTNHNVKESLERTIATIQSVLERTAQSFPNKGSSKAS 354
+ +H + ++ +++A +Q ++ T + + SS S
Sbjct: 238 F--SHSHPMDVAIGKSMAVLQELIIATRKEGGDGKSSLKS 275
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 18 VVIATQILQRDPSALTCKEKELKLIQSGSKTTV---SINIPQFDASFTGTGDLFAALMLA 74
V+I + Q +P+ L + L ++ GS+ V S +P + +TGTGD+FAA +LA
Sbjct: 182 VIIKSFREQENPTHL----RFLYSVKEGSEAAVRRFSGVVPYHEGRYTGTGDVFAACLLA 237
Query: 75 YITRTNHNVKESLERTIATIQSVL 98
+ +H + ++ +++A +Q ++
Sbjct: 238 F--SHSHPMDVAIGKSMAVLQELI 259
>pdb|3PZS|A Chain A, Crystal Structure Of A Pyridoxamine Kinase From Yersinia
Pestis Co92
pdb|3PZS|B Chain B, Crystal Structure Of A Pyridoxamine Kinase From Yersinia
Pestis Co92
Length = 289
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 14/249 (5%)
Query: 101 TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGL-KMNDLMD 159
+A FP + G V +NTVQFSNH+ YGH G V ++++G+ ++ L D
Sbjct: 22 SAAEFPXRRX----GVNVWPLNTVQFSNHTQYGHWTGCVXPASHLTDIVQGIADIDRLKD 77
Query: 160 YTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMG--DNGRMYVPEEVLPIYAN 217
VL+GY SP+ S I V ++K+ANP Y CDPV G + G + P V + N
Sbjct: 78 CDAVLSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVXGHPEKGCIVAP-GVAEFFCN 136
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
E L +D I PN E E L+ +++ ++ L RG K V++ L +
Sbjct: 137 EALPASDXIAPNLLELEQLSGERVENVEQAVQVARSLCARGPKVVLV--KHLSRAGYHAD 194
Query: 278 VASTVVGGSKTTVSINIPQFD---ASFTGTGDLFAALMLAYITRTNHNVKESLERTIATI 334
++ + I P D G GDL + L+L + + + ++LE A +
Sbjct: 195 CFEXLLVTADDAWHICRPLVDFGKRQPVGVGDLTSGLLLVNLLK-GEPLDKALEHVTAAV 253
Query: 335 QSVLERTAQ 343
V +T +
Sbjct: 254 YEVXLKTQE 262
>pdb|1TD2|A Chain A, Crystal Structure Of The Pdxy Protein From Escherichia
Coli
pdb|1TD2|B Chain B, Crystal Structure Of The Pdxy Protein From Escherichia
Coli
Length = 287
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 117/257 (45%), Gaps = 40/257 (15%)
Query: 101 TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMND-LMD 159
+A FP + LG V +NTVQFSNH+ YG G V+ E+++G+ D L
Sbjct: 20 SAAEFPMRR----LGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHT 75
Query: 160 YTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMG--DNGRMYVPEEVLPIYAN 217
VL+GY S + I +V+++K ANP Y CDPVMG + G + P V +
Sbjct: 76 CDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAP-GVAEFHVR 134
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSEL---GPE-- 272
L +D+I PN E E+L + + + ++ V+++ EL GP+
Sbjct: 135 HGLPASDIIAPNLVELEILCEHAVNN---------------VEEAVLAARELIAQGPQIV 179
Query: 273 --KHLLGVAST------VVGGSKTTVSINIPQFDASF---TGTGDLFAALMLAYITRTNH 321
KHL + ++ + I+ P D G GD+ + L+L + +
Sbjct: 180 LVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGA- 238
Query: 322 NVKESLERTIATIQSVL 338
++E+LE A + ++
Sbjct: 239 TLQEALEHVTAAVYEIM 255
>pdb|3MBJ|A Chain A, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (Bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.10 A Resolution (Rhombohedral Form)
pdb|3MBH|A Chain A, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|B Chain B, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|C Chain C, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|D Chain D, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|E Chain E, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|F Chain F, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
Length = 291
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 9/202 (4%)
Query: 115 GFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLL 174
GF+V + T SNH+ Y +T++ + E K+ + + + TGY SP+ +
Sbjct: 35 GFQVCPLPTAVLSNHTQYPGFSFLDLTDEXPKIIAEWKKLE--VQFDAIYTGYLGSPRQI 92
Query: 175 SKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIY-ANELLSVADVICPNQFEA 233
+ + +K+ ++ P + V DPV+GDNGR+Y + + L++ ADVI PN E
Sbjct: 93 QIVSDFIKDFRQ--PDSLIVADPVLGDNGRLYTNFDXEXVKEXRHLITKADVITPNLTEL 150
Query: 234 ELLTKIPIKDKAS---LLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTV 290
L P K ++ L + + +L D+G + V+I+S + E H V + G++
Sbjct: 151 FYLLDEPYKADSTDEELKEYLRLLSDKGPQVVIITSVPVHDEPHKTSVYAYNRQGNRYW- 209
Query: 291 SINIPQFDASFTGTGDLFAALM 312
+ P A + GTGD F +++
Sbjct: 210 KVTCPYLPAHYPGTGDTFTSVI 231
>pdb|1VI9|A Chain A, Crystal Structure Of Pyridoxamine Kinase
pdb|1VI9|B Chain B, Crystal Structure Of Pyridoxamine Kinase
pdb|1VI9|C Chain C, Crystal Structure Of Pyridoxamine Kinase
pdb|1VI9|D Chain D, Crystal Structure Of Pyridoxamine Kinase
Length = 299
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 122/276 (44%), Gaps = 45/276 (16%)
Query: 86 SLERTIATIQSVL-----ERTAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVI 140
SL + I IQS + +A FP + LG V +NTVQFSNH+ YG G V
Sbjct: 2 SLXKNILAIQSHVVYGHAGNSAAEFPXR----RLGANVWPLNTVQFSNHTQYGKWTGXVX 57
Query: 141 TEQDFDELIEGLKMND-LMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVM 199
E+++G+ D L VL+GY S + I +V+++K ANP Y CDPV
Sbjct: 58 PPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVX 117
Query: 200 G--DNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDR 257
G + G + P V + L +D+I PN E E+L + + +
Sbjct: 118 GHPEKGCIVAP-GVAEFHVRHGLPASDIIAPNLVELEILCEHAVNN-------------- 162
Query: 258 GIKTVVISSSEL---GPE----KHLLGVAST------VVGGSKTTVSINIPQFDASF--- 301
++ V+++ EL GP+ KHL + ++ + I+ P D
Sbjct: 163 -VEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEXLLVTADEAWHISRPLVDFGXRQP 221
Query: 302 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSV 337
G GD+ + L+L + + ++E+LE A + +
Sbjct: 222 VGVGDVTSGLLLVKLLQGA-TLQEALEHVTAAVYEI 256
>pdb|2DDM|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDM|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDO|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDO|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDW|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
pdb|2DDW|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
Length = 283
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 6/231 (2%)
Query: 115 GFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMND-LMDYTHVLTGYCRSPQL 173
G V A+ TV SN Y G I ++ F + L+ D L V TGY +
Sbjct: 43 GLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQ 102
Query: 174 LSKIGELVKELKKANPTLMYVCDPVMGD-NGRMYVPEEVLPIYANELLSVADVICPNQFE 232
+ + E + L+K +P L+ + DPV+GD + +YV ++ Y LL +A I PN FE
Sbjct: 103 IKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFE 162
Query: 233 AELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSI 292
E+LT +D S + L +K VV++S+ E + V VV + + I
Sbjct: 163 LEILTGKNCRDLDSAIAAAKSLLSDTLKWVVVTSASGNEENQEMQV---VVVTADSVNVI 219
Query: 293 NIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQ 343
+ + GTGDLF A +++ + + + +++ R + V+ T Q
Sbjct: 220 SHSRVKTDLKGTGDLFCAQLISGLLK-GKALTDAVHRAGLRVLEVMRYTQQ 269
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 208 PEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSS 267
P + LP NELLS+ D+I PN+ EAELL+ I + ++ S+ N GIKTV+I+
Sbjct: 168 PAKALP---NELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLIT-- 222
Query: 268 ELGPEKHLLGVASTVVGGSKTTVSINIPQFDA-SFTGTGDLFAALMLAYITRTNHNVKES 326
LG T + I + +A T GD F ++ + ++ N+ ++
Sbjct: 223 --------LGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADA 274
Query: 327 LE 328
++
Sbjct: 275 ID 276
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 13/108 (12%)
Query: 208 PEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSS 267
P LP +ELL++ D+I PN+ EAE LT I +++ K VLH++GI+TV+I+
Sbjct: 169 PARELP---DELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLIT-- 223
Query: 268 ELGPEKHLLGVASTVVGGSKTTVSINIPQFD---ASFTGTGDLFAALM 312
LG GV ++V G + + D A T G L AL+
Sbjct: 224 -LGSR----GVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALL 266
>pdb|3H74|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum
pdb|3HYO|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum In Complex With Adp
pdb|3IBQ|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum In Complex With Atp
Length = 282
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 116 FEVDAINTVQFSNH-SGYGHLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLL 174
++V A+ T S H SGYG V+ + + + + L GY S L
Sbjct: 32 YDVAALPTSLLSTHTSGYG--TPAVVDLSTWLPQVFAHWTRAQLHFDQALIGYVGSVALC 89
Query: 175 SKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYA-NELLSVADVICPNQFEA 233
+I L++ +L+ V DPV+GD G++Y + + A +L+ ADVI PN EA
Sbjct: 90 QQI---TTYLEQQTLSLL-VVDPVLGDLGQLYQGFDQDYVAAXRQLIQQADVILPNTTEA 145
Query: 234 ELLTKIPIK 242
LLT P +
Sbjct: 146 ALLTGAPYQ 154
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 10/147 (6%)
Query: 205 MYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVI 264
++ P + + +++DV C N+ EAE+LT + + A + VL RG + V+I
Sbjct: 184 LFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVII 243
Query: 265 SSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYIT-RTNHNV 323
+ LG E + V S K + + D TG GD F + Y+ N ++
Sbjct: 244 T---LGAEGCV--VLSQTEPEPKHIPTEKVKAVDT--TGAGDSFVGALAFYLAYYPNLSL 296
Query: 324 KESLERT--IATIQSVLERTAQSFPNK 348
++ L R+ IA + T S+P K
Sbjct: 297 EDMLNRSNFIAAVSVQAAGTQSSYPYK 323
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 184 LKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKD 243
LK ++ DPV + + L+ I PN+ EAE+L PI D
Sbjct: 154 LKNFKDKTNFILDPVSAEKAS----------WVKHLIKDFHTIKPNRHEAEILAGFPITD 203
Query: 244 KASLLKTINVLHDRGIKTVVIS 265
L+K N GIK V IS
Sbjct: 204 TDDLIKASNYFLGLGIKKVFIS 225
>pdb|2I5B|A Chain A, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|C Chain C, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|D Chain D, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|B Chain B, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|E Chain E, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
Length = 271
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 194 VCDPVM---GDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKI-PIKDKASLLK 249
V DPVM G N +Y PE + +L +A VI PN FEA L+ + +K +++
Sbjct: 105 VIDPVMVCKGANEVLY-PEHAQALR-EQLAPLATVITPNLFEASQLSGMDELKTVDDMIE 162
Query: 250 TINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDASFT-GTGDLF 308
+H G + VVI+ G KH V V+ +T + D +T G G F
Sbjct: 163 AAKKIHALGAQYVVITGG--GKLKHEKAV--DVLYDGETAEVLESEMIDTPYTHGAGCTF 218
Query: 309 AALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFP 346
+A + A + + VKE++ I + ++ +SFP
Sbjct: 219 SAAVTAELAK-GAEVKEAIYAAKEFITAAIK---ESFP 252
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 29/183 (15%)
Query: 153 KMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDP--VMGDNGRMYV--- 207
++N ++ + Y R + + +G + EL+ L + DP V+ D ++
Sbjct: 102 QLNVFAEFDPHVPQYYRDSKFVC-LGNIDPELQLK--VLDQIDDPKLVVCDTXNFWIEGK 158
Query: 208 PEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSS 267
PEE+ ++L+ DV N EA LL+ P +L+KT ++ + G KT++I
Sbjct: 159 PEEL-----KKVLARVDVFIVNDSEARLLSGDP-----NLVKTARIIREXGPKTLIIKKG 208
Query: 268 ELGPEKHLLGVASTVVGGSKTTV-SINIPQFDASFTGTGDLFAALMLAYITRTNHNVKES 326
E G LL + + + SI P TG GD FA + ++ R N E+
Sbjct: 209 EHGA---LLFTDNGIFAAPAFPLESIYDP------TGAGDTFAGGFIGHLARCG-NTSEA 258
Query: 327 LER 329
R
Sbjct: 259 EXR 261
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 233 AELLTKIPIKDKASL-LKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS 291
+ +L KI I ++ + L+ + + GIKTV + SS KH+L TV G +V
Sbjct: 2 SHMLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVK 61
Query: 292 --INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERT 330
+NIP ++ TG + +++ N N E +ER+
Sbjct: 62 SYLNIPAIISAAEITGAVAIHPGYGFLSE-NANFAEQVERS 101
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 233 AELLTKIPIKDKASL-LKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS 291
+ +L KI I ++ + L+ + + GIKTV + SS KH+L TV G +V
Sbjct: 2 SHMLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVK 61
Query: 292 --INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERT 330
+NIP ++ TG + +++ N N E +ER+
Sbjct: 62 SYLNIPAIISAAEITGAVAIHPGYGFLSE-NANFAEQVERS 101
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 233 AELLTKIPIKDKASL-LKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS 291
+ +L KI I ++ + L+ + + GIKTV + SS KH+L TV G +V
Sbjct: 19 SHMLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVK 78
Query: 292 --INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERT 330
+NIP ++ TG + +++ N N E +ER+
Sbjct: 79 SYLNIPAIISAAEITGAVAIHPGYGFLSE-NANFAEQVERS 118
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 235 LLTKIPIKDKASL-LKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS-- 291
+L KI I ++ + L+ + + GIKTV + SS KH+L TV G +V
Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60
Query: 292 INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERT 330
+NIP ++ TG + +++ N N E +ER+
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSE-NANFAEQVERS 98
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 235 LLTKIPIKDKASL-LKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS-- 291
+L KI I ++ + L+ + + GIKTV + SS KH+L TV G +V
Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60
Query: 292 INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERT 330
+NIP ++ TG + +++ N N E +ER+
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSE-NANFAEQVERS 98
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 235 LLTKIPIKDKASL-LKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS-- 291
+L KI I ++ + L+ + + GIKTV + SS KH+L TV G +V
Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60
Query: 292 INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERT 330
+NIP ++ TG + +++ N N E +ER+
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSE-NANFAEQVERS 98
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 235 LLTKIPIKDKASL-LKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS-- 291
+L KI I ++ + L+ + + GIKTV + SS KH+L TV G +V
Sbjct: 22 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 81
Query: 292 INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERT 330
+NIP ++ TG + +++ N N E +ER+
Sbjct: 82 LNIPAIISAAEITGAVAIHPGYGFLSE-NANFAEQVERS 119
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 233 AELLTKIPIKDKASL-LKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS 291
+ +L KI I ++ + L+ + + GIKTV + SS KH+L TV G +V
Sbjct: 2 SHMLDKIVIANRGEIALEILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVK 61
Query: 292 --INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERT 330
+NIP ++ TG + +++ N N E +ER+
Sbjct: 62 SYLNIPAIISAAEITGAVAIHPGYGFLSE-NANFAEQVERS 101
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 233 AELLTKIPIKDKASL-LKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS 291
+ +L KI I ++ + L+ + GIKTV + SS KH+L TV G +V
Sbjct: 19 SHMLDKIVIANRGEIALRILRACKRLGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVK 78
Query: 292 --INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERT 330
+NIP ++ TG + +++ N N E +ER+
Sbjct: 79 SYLNIPAIISAAEITGAVAIHPGYGFLSE-NANFAEQVERS 118
>pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|B Chain B, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|C Chain C, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
Length = 481
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 134 HLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVK 182
+LK +V++ +F L EG M DL + VL G SP+ L + ELV+
Sbjct: 158 NLKFQVLSNPEF--LAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVR 204
>pdb|1UB0|A Chain A, Crystal Structure Analysis Of Phosphomethylpyrimidine
Kinase (Thid) From Thermus Thermophilus Hb8
Length = 258
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 194 VCDPVM-GDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTIN 252
V DPVM +G + +E L +AD++ PN+ EAE L PI+ +
Sbjct: 101 VVDPVMVAKSGDPLLAKEAAAALKERLFPLADLVTPNRLEAEALLGRPIRTLKEAEEAAK 160
Query: 253 VLHDRGIKTVVISSSEL 269
L G K V++ L
Sbjct: 161 ALLALGPKAVLLKGGHL 177
>pdb|3DZV|A Chain A, Crystal Structure Of
4-Methyl-5-(Beta-Hydroxyethyl)thiazole Kinase
(Np_816404.1) From Enterococcus Faecalis V583 At 2.57 A
Resolution
pdb|3DZV|B Chain B, Crystal Structure Of
4-Methyl-5-(Beta-Hydroxyethyl)thiazole Kinase
(Np_816404.1) From Enterococcus Faecalis V583 At 2.57 A
Resolution
Length = 273
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 277 GVASTVVGGSKTTVSIN-IPQFDASFTGTGDLFAALMLAYITRTN 320
G+ +V + V N +P+ D FTGTGDL AL+ A + N
Sbjct: 174 GIQDVLVSQEQVIVLQNGVPELDC-FTGTGDLVGALVAALLGEGN 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,577,774
Number of Sequences: 62578
Number of extensions: 372015
Number of successful extensions: 1024
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 55
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)