Query psy11349
Match_columns 360
No_of_seqs 362 out of 2703
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 16:06:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2599|consensus 100.0 8.2E-41 1.8E-45 295.9 22.9 258 85-350 6-273 (308)
2 COG2240 PdxK Pyridoxal/pyridox 100.0 9.9E-40 2.1E-44 296.0 23.9 249 89-347 1-257 (281)
3 COG0351 ThiD Hydroxymethylpyri 100.0 2.2E-37 4.7E-42 279.6 21.5 246 88-359 3-260 (263)
4 PRK08176 pdxK pyridoxal-pyrido 100.0 3.8E-35 8.2E-40 274.7 26.7 259 88-358 15-280 (281)
5 PRK05756 pyridoxamine kinase; 100.0 9.4E-35 2E-39 272.9 27.6 250 88-345 1-260 (286)
6 PLN02978 pyridoxal kinase 100.0 9.7E-35 2.1E-39 274.9 26.9 251 88-345 14-272 (308)
7 TIGR00687 pyridox_kin pyridoxa 100.0 2.3E-33 5E-38 263.5 25.9 248 89-346 2-262 (286)
8 PTZ00344 pyridoxal kinase; Pro 100.0 1.5E-32 3.3E-37 259.0 26.5 256 86-345 2-263 (296)
9 PF08543 Phos_pyr_kin: Phospho 100.0 6.8E-33 1.5E-37 254.6 20.1 226 108-350 12-244 (246)
10 PRK12412 pyridoxal kinase; Rev 100.0 4.6E-32 9.9E-37 252.3 22.9 246 89-350 2-256 (268)
11 PRK12616 pyridoxal kinase; Rev 100.0 6.9E-32 1.5E-36 251.3 22.2 242 88-350 3-259 (270)
12 PRK07105 pyridoxamine kinase; 100.0 1.6E-31 3.5E-36 250.7 24.1 249 86-345 2-260 (284)
13 TIGR00097 HMP-P_kinase phospho 100.0 8.7E-32 1.9E-36 248.6 21.7 235 91-348 1-248 (254)
14 PTZ00493 phosphomethylpyrimidi 100.0 2.4E-31 5.1E-36 249.8 22.7 247 88-347 4-292 (321)
15 PRK06427 bifunctional hydroxy- 100.0 3.5E-31 7.7E-36 246.1 22.8 246 87-349 3-257 (266)
16 cd01173 pyridoxal_pyridoxamine 100.0 1.8E-30 3.8E-35 239.8 26.1 245 90-342 1-253 (254)
17 cd01169 HMPP_kinase 4-amino-5- 100.0 3.3E-30 7.1E-35 236.1 23.5 234 90-340 1-241 (242)
18 PLN02898 HMP-P kinase/thiamin- 100.0 8.7E-29 1.9E-33 249.2 21.6 244 88-347 9-260 (502)
19 PTZ00347 phosphomethylpyrimidi 100.0 7.5E-29 1.6E-33 249.8 20.9 239 88-343 230-481 (504)
20 PRK14713 multifunctional hydro 100.0 9.3E-29 2E-33 250.2 20.0 248 86-349 27-283 (530)
21 PRK08573 phosphomethylpyrimidi 100.0 3.6E-28 7.8E-33 241.2 22.9 243 88-348 2-252 (448)
22 PRK09517 multifunctional thiam 100.0 4.5E-28 9.8E-33 253.7 20.3 242 87-349 240-495 (755)
23 KOG2598|consensus 100.0 6.5E-28 1.4E-32 226.1 18.5 248 88-359 23-299 (523)
24 PRK12413 phosphomethylpyrimidi 99.9 3E-26 6.6E-31 211.4 21.5 237 88-347 3-249 (253)
25 COG1105 FruK Fructose-1-phosph 99.9 1E-21 2.2E-26 182.1 20.5 178 135-339 106-285 (310)
26 cd01171 YXKO-related B.subtili 99.9 6.1E-21 1.3E-25 176.2 17.7 228 82-343 2-238 (254)
27 cd01174 ribokinase Ribokinase 99.8 1.2E-18 2.5E-23 163.7 20.7 169 139-340 114-283 (292)
28 TIGR00196 yjeF_cterm yjeF C-te 99.8 5.5E-19 1.2E-23 164.8 17.5 227 75-334 11-241 (272)
29 PRK11142 ribokinase; Provision 99.8 1.1E-18 2.3E-23 165.2 19.7 169 139-340 117-286 (306)
30 TIGR03828 pfkB 1-phosphofructo 99.8 2.5E-18 5.4E-23 162.5 21.9 177 137-340 106-284 (304)
31 PTZ00292 ribokinase; Provision 99.8 1.4E-18 3.1E-23 166.1 19.3 175 139-340 131-307 (326)
32 PRK13508 tagatose-6-phosphate 99.8 7.4E-18 1.6E-22 159.9 23.6 158 159-340 126-286 (309)
33 cd01166 KdgK 2-keto-3-deoxyglu 99.8 2.8E-18 6E-23 161.2 20.3 163 159-340 124-290 (294)
34 PRK10294 6-phosphofructokinase 99.8 5.1E-18 1.1E-22 161.0 21.7 177 137-340 110-289 (309)
35 TIGR03168 1-PFK hexose kinase, 99.8 6.7E-18 1.4E-22 159.7 22.0 177 137-340 106-284 (303)
36 TIGR02152 D_ribokin_bact ribok 99.8 3.4E-18 7.4E-23 160.7 19.5 170 139-340 109-279 (293)
37 cd01164 FruK_PfkB_like 1-phosp 99.8 8.1E-18 1.7E-22 158.0 21.8 177 137-340 107-285 (289)
38 PRK09513 fruK 1-phosphofructok 99.8 1.4E-17 3E-22 158.2 22.9 177 137-340 110-288 (312)
39 PTZ00247 adenosine kinase; Pro 99.8 2.9E-17 6.3E-22 158.3 21.3 162 159-340 159-331 (345)
40 PRK09850 pseudouridine kinase; 99.8 2.5E-17 5.4E-22 156.6 20.6 154 159-339 134-288 (313)
41 cd01168 adenosine_kinase Adeno 99.8 1.5E-17 3.3E-22 157.9 18.0 159 159-340 145-306 (312)
42 PRK09954 putative kinase; Prov 99.8 3.4E-17 7.5E-22 158.8 20.4 169 139-339 172-341 (362)
43 cd01172 RfaE_like RfaE encodes 99.8 1.4E-17 3.1E-22 157.2 17.1 155 159-340 134-291 (304)
44 TIGR01231 lacC tagatose-6-phos 99.8 3.8E-17 8.3E-22 155.0 19.6 158 159-340 126-286 (309)
45 TIGR02198 rfaE_dom_I rfaE bifu 99.8 3.3E-17 7.1E-22 155.7 18.5 154 159-340 143-299 (315)
46 PLN02341 pfkB-type carbohydrat 99.8 2.6E-17 5.6E-22 164.6 17.3 161 159-339 224-389 (470)
47 PLN02323 probable fructokinase 99.8 1.2E-16 2.6E-21 153.0 21.1 162 159-340 136-308 (330)
48 PLN02967 kinase 99.7 7E-17 1.5E-21 162.6 19.5 164 159-335 335-523 (581)
49 cd01944 YegV_kinase_like YegV- 99.7 1.4E-16 3E-21 149.5 20.4 159 159-340 125-287 (289)
50 cd01167 bac_FRK Fructokinases 99.7 2.9E-17 6.3E-22 154.4 15.5 161 159-340 120-291 (295)
51 cd01941 YeiC_kinase_like YeiC- 99.7 3.6E-16 7.9E-21 146.4 22.4 239 60-339 32-287 (288)
52 TIGR00694 thiM hydroxyethylthi 99.7 1.2E-16 2.5E-21 147.1 18.4 179 142-349 40-230 (249)
53 PLN02813 pfkB-type carbohydrat 99.7 1.9E-16 4.1E-21 156.3 20.4 161 159-340 224-388 (426)
54 cd01170 THZ_kinase 4-methyl-5- 99.7 6.8E-16 1.5E-20 141.3 20.8 164 160-344 50-226 (242)
55 PF00294 PfkB: pfkB family car 99.7 3.6E-16 7.8E-21 147.1 18.7 241 60-340 33-291 (301)
56 PRK09434 aminoimidazole ribosi 99.7 1.9E-16 4E-21 149.8 16.6 161 159-340 119-290 (304)
57 cd01945 ribokinase_group_B Rib 99.7 7.7E-16 1.7E-20 144.0 20.0 149 159-340 126-275 (284)
58 PLN02379 pfkB-type carbohydrat 99.7 1.7E-15 3.7E-20 147.1 20.6 159 159-341 177-339 (367)
59 PRK15074 inosine/guanosine kin 99.7 1.7E-15 3.7E-20 149.1 20.3 166 159-341 186-412 (434)
60 COG0063 Predicted sugar kinase 99.7 2.3E-16 5E-21 146.2 12.9 240 52-339 1-258 (284)
61 cd01940 Fructoselysine_kinase_ 99.7 7.1E-16 1.5E-20 142.8 15.8 146 159-339 112-259 (264)
62 PRK11316 bifunctional heptose 99.7 2.6E-15 5.6E-20 150.7 20.8 151 159-339 143-296 (473)
63 PLN02543 pfkB-type carbohydrat 99.7 2E-15 4.3E-20 150.5 19.5 168 159-339 266-469 (496)
64 PLN02548 adenosine kinase 99.7 1.4E-15 3.1E-20 145.7 16.7 162 159-340 148-320 (332)
65 COG0524 RbsK Sugar kinases, ri 99.7 1.9E-15 4E-20 143.4 17.0 156 160-339 130-289 (311)
66 PRK10565 putative carbohydrate 99.7 2.8E-15 6E-20 150.8 18.3 226 75-340 241-475 (508)
67 cd01946 ribokinase_group_C Rib 99.6 6.5E-15 1.4E-19 137.5 16.8 152 159-340 114-272 (277)
68 PRK09355 hydroxyethylthiazole 99.6 3.3E-14 7.1E-19 131.9 21.0 162 162-344 59-230 (263)
69 cd00287 ribokinase_pfkB_like r 99.6 6.3E-15 1.4E-19 129.9 14.9 138 160-317 58-196 (196)
70 cd01943 MAK32 MAK32 kinase. M 99.6 1.4E-14 3.1E-19 138.7 17.0 165 159-341 120-302 (328)
71 cd01942 ribokinase_group_A Rib 99.6 2.6E-14 5.6E-19 133.2 16.0 145 159-340 126-275 (279)
72 PRK09813 fructoselysine 6-kina 99.6 4.6E-14 1E-18 130.6 17.5 143 159-340 113-256 (260)
73 cd01947 Guanosine_kinase_like 99.6 3.4E-14 7.5E-19 131.6 14.8 140 159-340 121-261 (265)
74 cd01937 ribokinase_group_D Rib 99.6 2.7E-14 5.9E-19 131.5 13.9 146 159-338 107-253 (254)
75 PF01256 Carb_kinase: Carbohyd 99.6 6.7E-15 1.5E-19 134.4 9.2 208 91-339 1-221 (242)
76 cd01939 Ketohexokinase Ketohex 99.6 4.7E-13 1E-17 125.8 20.8 165 138-340 113-286 (290)
77 KOG2855|consensus 99.5 5.3E-13 1.1E-17 124.4 15.9 160 159-339 139-306 (330)
78 COG2870 RfaE ADP-heptose synth 99.5 5.1E-13 1.1E-17 125.8 14.4 159 145-335 130-291 (467)
79 PLN02630 pfkB-type carbohydrat 99.4 2.9E-12 6.2E-17 122.8 15.9 134 175-340 135-274 (335)
80 KOG2599|consensus 99.4 1.3E-13 2.7E-18 123.4 4.7 87 10-103 177-266 (308)
81 KOG2854|consensus 99.4 1.3E-11 2.8E-16 114.0 16.5 161 159-341 159-332 (343)
82 COG2145 ThiM Hydroxyethylthiaz 99.3 1.9E-10 4E-15 103.4 19.6 166 162-350 60-239 (265)
83 KOG3974|consensus 99.3 2.3E-10 5E-15 102.1 16.5 211 78-317 20-241 (306)
84 PF02110 HK: Hydroxyethylthiaz 99.2 5.3E-10 1.1E-14 101.5 15.1 167 160-348 50-229 (246)
85 KOG2947|consensus 98.7 5.3E-07 1.1E-11 80.2 14.1 162 138-334 118-289 (308)
86 KOG3009|consensus 97.9 8.6E-05 1.9E-09 71.8 10.6 158 159-339 425-599 (614)
87 COG2240 PdxK Pyridoxal/pyridox 96.9 0.00078 1.7E-08 62.2 3.5 61 13-80 171-231 (281)
88 PF08543 Phos_pyr_kin: Phospho 96.3 0.0085 1.9E-07 55.0 6.2 59 13-78 154-213 (246)
89 PLN02978 pyridoxal kinase 95.3 0.019 4.2E-07 54.5 4.2 72 13-89 184-256 (308)
90 PTZ00344 pyridoxal kinase; Pro 93.4 0.2 4.3E-06 47.3 6.5 62 14-78 175-238 (296)
91 PRK08176 pdxK pyridoxal-pyrido 92.5 0.26 5.7E-06 46.1 5.8 59 13-78 187-245 (281)
92 PRK14039 ADP-dependent glucoki 91.0 2 4.4E-05 42.8 10.3 114 142-265 197-330 (453)
93 PRK03979 ADP-specific phosphof 86.4 7.9 0.00017 38.8 10.9 113 142-264 209-344 (463)
94 PRK05756 pyridoxamine kinase; 85.5 1.7 3.7E-05 40.6 5.6 59 13-78 173-234 (286)
95 PRK07105 pyridoxamine kinase; 82.8 3.2 7E-05 38.7 6.2 59 13-78 176-234 (284)
96 TIGR02045 P_fruct_ADP ADP-spec 82.2 14 0.00031 36.8 10.6 112 142-264 196-330 (446)
97 PRK06427 bifunctional hydroxy- 74.3 6.6 0.00014 36.0 5.5 57 14-78 170-227 (266)
98 PRK12616 pyridoxal kinase; Rev 71.9 9.3 0.0002 35.4 5.9 58 13-78 170-228 (270)
99 cd01173 pyridoxal_pyridoxamine 69.7 12 0.00026 34.0 6.1 57 14-78 172-230 (254)
100 cd01169 HMPP_kinase 4-amino-5- 68.0 10 0.00022 34.1 5.2 57 13-78 163-220 (242)
101 PTZ00347 phosphomethylpyrimidi 66.0 13 0.00028 37.8 6.0 61 13-78 396-457 (504)
102 PRK14038 ADP-dependent glucoki 65.9 43 0.00093 33.6 9.2 110 142-264 211-340 (453)
103 PF04587 ADP_PFK_GK: ADP-speci 62.9 19 0.00042 36.0 6.3 84 143-237 197-291 (444)
104 PRK10076 pyruvate formate lyas 58.1 1.4E+02 0.003 26.7 11.1 73 173-260 52-129 (213)
105 PRK12412 pyridoxal kinase; Rev 56.7 27 0.00058 32.2 5.8 57 13-78 167-225 (268)
106 PRK12413 phosphomethylpyrimidi 54.7 27 0.00058 31.7 5.5 29 50-78 193-221 (253)
107 TIGR00687 pyridox_kin pyridoxa 51.9 32 0.0007 31.9 5.6 30 49-78 204-235 (286)
108 PRK08573 phosphomethylpyrimidi 51.7 25 0.00054 35.2 5.0 58 12-78 165-223 (448)
109 TIGR00097 HMP-P_kinase phospho 49.8 34 0.00074 31.1 5.3 30 49-78 189-219 (254)
110 COG0541 Ffh Signal recognition 44.8 43 0.00093 33.3 5.2 100 143-265 145-247 (451)
111 TIGR00334 5S_RNA_mat_M5 ribonu 40.4 2.5E+02 0.0053 24.4 8.8 83 160-255 23-109 (174)
112 cd02067 B12-binding B12 bindin 38.8 1.2E+02 0.0026 23.8 6.3 50 139-195 36-86 (119)
113 PLN02898 HMP-P kinase/thiamin- 37.9 54 0.0012 33.3 5.1 57 14-78 175-232 (502)
114 KOG0174|consensus 37.3 28 0.00061 30.5 2.4 41 301-341 146-186 (224)
115 PF11965 DUF3479: Domain of un 36.9 1.1E+02 0.0025 26.1 6.1 41 142-187 45-85 (164)
116 TIGR01358 DAHP_synth_II 3-deox 34.8 1.6E+02 0.0035 29.3 7.5 65 136-201 286-350 (443)
117 TIGR03849 arch_ComA phosphosul 34.1 3.7E+02 0.008 24.6 9.3 29 243-271 132-160 (237)
118 PLN02291 phospho-2-dehydro-3-d 33.3 1.7E+02 0.0037 29.4 7.4 65 136-201 306-370 (474)
119 COG0027 PurT Formate-dependent 33.2 1.6E+02 0.0035 28.2 6.8 81 90-188 14-98 (394)
120 PRK11121 nrdG anaerobic ribonu 32.8 2.7E+02 0.0058 23.3 7.8 51 137-187 44-95 (154)
121 PF14606 Lipase_GDSL_3: GDSL-l 32.3 1.3E+02 0.0029 26.1 5.8 53 142-200 48-104 (178)
122 PF02310 B12-binding: B12 bind 31.9 2.3E+02 0.005 21.9 7.0 36 159-195 51-86 (121)
123 cd02071 MM_CoA_mut_B12_BD meth 31.5 2.3E+02 0.0049 22.5 6.9 45 138-189 35-79 (122)
124 KOG4184|consensus 29.7 93 0.002 30.1 4.7 74 159-238 238-317 (478)
125 PF00215 OMPdecase: Orotidine 29.6 2.9E+02 0.0063 24.6 7.9 77 142-230 12-93 (226)
126 COG1180 PflA Pyruvate-formate 29.4 4.5E+02 0.0098 24.1 11.6 85 159-259 83-173 (260)
127 PRK14713 multifunctional hydro 28.9 1.1E+02 0.0023 31.4 5.6 36 49-85 221-257 (530)
128 PRK08508 biotin synthase; Prov 28.1 4.9E+02 0.011 24.1 10.5 107 140-259 40-151 (279)
129 PTZ00493 phosphomethylpyrimidi 27.8 55 0.0012 31.3 3.0 29 50-78 235-264 (321)
130 PF01474 DAHP_synth_2: Class-I 27.5 1.9E+02 0.0042 28.8 6.6 65 136-201 289-353 (439)
131 TIGR02045 P_fruct_ADP ADP-spec 26.6 43 0.00092 33.5 2.0 30 289-318 410-442 (446)
132 PRK03979 ADP-specific phosphof 25.2 51 0.0011 33.1 2.3 19 300-318 437-456 (463)
133 KOG0780|consensus 25.2 2.8E+02 0.0061 27.5 7.1 87 166-265 161-248 (483)
134 PF11469 Ribonucleas_3_2: Ribo 25.2 1.1E+02 0.0024 24.0 3.7 29 301-330 55-84 (120)
135 PRK05096 guanosine 5'-monophos 25.0 4.3E+02 0.0092 25.6 8.3 135 51-200 44-223 (346)
136 PF06838 Met_gamma_lyase: Meth 24.3 1.6E+02 0.0035 28.8 5.4 49 145-197 144-197 (403)
137 PRK05301 pyrroloquinoline quin 23.8 6.6E+02 0.014 24.2 11.3 112 138-261 44-157 (378)
138 PRK00125 pyrF orotidine 5'-pho 23.8 5.2E+02 0.011 24.1 8.6 73 146-230 44-123 (278)
139 cd02752 MopB_Formate-Dh-Na-lik 22.8 4.6E+02 0.0099 27.8 8.9 92 159-257 169-267 (649)
140 cd02070 corrinoid_protein_B12- 21.7 2.9E+02 0.0064 24.1 6.3 81 137-237 117-199 (201)
141 PF14359 DUF4406: Domain of un 21.7 1.7E+02 0.0038 22.3 4.2 34 164-200 3-38 (92)
142 cd02069 methionine_synthase_B1 21.7 3E+02 0.0065 24.5 6.4 53 136-195 122-174 (213)
143 TIGR01305 GMP_reduct_1 guanosi 21.4 3.3E+02 0.0071 26.3 6.8 137 49-200 41-222 (343)
144 PRK12290 thiE thiamine-phospha 21.1 4.1E+02 0.0088 26.7 7.6 32 306-338 133-164 (437)
145 TIGR02127 pyrF_sub2 orotidine 21.1 6.6E+02 0.014 23.2 10.0 73 146-230 44-122 (261)
146 KOG4532|consensus 20.6 1.1E+02 0.0024 28.5 3.4 42 13-62 154-195 (344)
No 1
>KOG2599|consensus
Probab=100.00 E-value=8.2e-41 Score=295.94 Aligned_cols=258 Identities=43% Similarity=0.805 Sum_probs=233.9
Q ss_pred cccccceeeecccccc-----cccccCCchhhhhcCeeeeeeeeeeecCCCCCCccccccCCHHHHHHHHHHhhhCCCCc
Q psy11349 85 ESLERTIATIQSVLER-----TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDLMD 159 (360)
Q Consensus 85 ~~~~~~vl~I~~~~~~-----~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~~g~~l~~~~l~~ll~~~~~~~~~~ 159 (360)
...+++||+||+++.+ .+++|| ||..|+++++++++++|||+||..+.|..++++++.++++.+..+++..
T Consensus 6 ~~~~kRVLSIQShVvhGYVGNkaAtFP----LQllGwdVD~insVqFSNHtGY~~~kG~~~~~~eL~dL~egl~~nn~~~ 81 (308)
T KOG2599|consen 6 METTKRVLSIQSHVVHGYVGNKAATFP----LQLLGWDVDVINSVQFSNHTGYAHVKGQVLNEEELEDLYEGLLLNNLNK 81 (308)
T ss_pred ccCCccEEEEeeeeeeeeccccccccc----hhhhccccccccceeeccccCCccccccccCHHHHHHHHHHHhhccccc
Confidence 3457899999999876 899999 9999999999999999999999999999999999999999998887778
Q ss_pred cCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCC
Q psy11349 160 YTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKI 239 (360)
Q Consensus 160 ~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~ 239 (360)
++++++||+++...++.+.++++++|+.||++.+||||||+|.|++|++++.+..|++.+.+.+|+||||++|++.|+|+
T Consensus 82 Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiLtg~ 161 (308)
T KOG2599|consen 82 YDAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEILTGM 161 (308)
T ss_pred cceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccCCC-c-eEEEEEeeeccCCceEEEEEecccCCcccCchHHHHHHHHHHHH
Q psy11349 240 PIKDKASLLKTINVLHDRGIKTVVISSSELGPE-K-HLLGVASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYIT 317 (360)
Q Consensus 240 ~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~-g-~~~~~~~~~~~~~~~~~~~~~~~v~~~t~GaGD~f~a~~~a~L~ 317 (360)
.+.+.++..++++.|+++|++.|+||+..+|+. | .+.+..+.. +.+.+.+..|+++..++|+||.|+|.+++.+.
T Consensus 162 ~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~---~~~~f~~~ipki~~~FtGTGDLfsaLLla~~~ 238 (308)
T KOG2599|consen 162 EIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSC---GSERFRYLIPKIDGVFTGTGDLFSALLLAWLH 238 (308)
T ss_pred eeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEecc---CCceEEEEecccceEEecccHHHHHHHHHHHh
Confidence 999999999999999999999999998877765 5 344554422 15678888899999999999999999999998
Q ss_pred cCC---CCHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy11349 318 RTN---HNVKESLERTIATIQSVLERTAQSFPNKGS 350 (360)
Q Consensus 318 ~~g---~~l~~A~~~A~a~~~~~l~~t~~~~~~~~~ 350 (360)
+ . .++..|++.+.+.++.+|++|.+.....+.
T Consensus 239 ~-~~~~~~l~~a~e~~ls~~~~viqkT~~~~~~~~~ 273 (308)
T KOG2599|consen 239 E-SPDNDDLSKAVEQVLSSVQAVIQKTLDYAKAQGG 273 (308)
T ss_pred c-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7 4 689999999999999999999987654444
No 2
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=100.00 E-value=9.9e-40 Score=296.03 Aligned_cols=249 Identities=38% Similarity=0.591 Sum_probs=221.1
Q ss_pred cceeeecccccc-----cccccCCchhhhhcCeeeeeeeeeeecCCCCCCccccccCCHHHHHHHHHHhhhCCC-CccCE
Q psy11349 89 RTIATIQSVLER-----TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDL-MDYTH 162 (360)
Q Consensus 89 ~~vl~I~~~~~~-----~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~~g~~l~~~~l~~ll~~~~~~~~-~~~d~ 162 (360)
++|++||+++.+ .+++|+ |+.+|++++.++|+++|||++|..+.|..+.+++++.+++++...++ .++|+
T Consensus 1 k~vlaIqShVv~G~vGn~AA~f~----lq~~G~~V~~vpTV~fSnHtgyg~~~g~v~~~e~l~~~l~~l~~~~~~~~~da 76 (281)
T COG2240 1 KRILAIQSHVVYGSVGNSAAIFP----LQRLGLDVWAVPTVQFSNHTGYGKWTGIVMPPEQLADLLNGLEAIDKLGECDA 76 (281)
T ss_pred CcEEEEeeeEeecccccHhHHHH----HHHcCCceeeeceEEecCCCCCCCCCCcCCCHHHHHHHHHHHHhcccccccCE
Confidence 579999999887 777887 99999999999999999999999999999999999999999998665 78999
Q ss_pred EEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCC
Q psy11349 163 VLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIK 242 (360)
Q Consensus 163 i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~ 242 (360)
|++||+++.++.+.+.++++..|+.+|++.++|||||+|.|++|+.++..+.++++++|.+|++|||..|+++|+|.+++
T Consensus 77 vltGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe~Ltg~~~~ 156 (281)
T COG2240 77 VLTGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELEILTGKPLN 156 (281)
T ss_pred EEEccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecccc-CC-CceEEEEEeeeccCCceEEEEEecccCCcccCchHHHHHHHHHHHHcCC
Q psy11349 243 DKASLLKTINVLHDRGIKTVVISSSEL-GP-EKHLLGVASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTN 320 (360)
Q Consensus 243 ~~~d~~~aa~~l~~~g~~~Vlvtg~~~-g~-~g~~~~~~~~~~~~~~~~~~~~~~~v~~~t~GaGD~f~a~~~a~L~~~g 320 (360)
+.+++.++++.|.+.|++.|+||+.+. +. .+.+.+...+. ...+++. +.++..+.|+||.|+|.|++.+++ |
T Consensus 157 ~~~da~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~----~~~~h~~-~~v~~~~~GtGDL~sallla~lL~-g 230 (281)
T COG2240 157 TLDDAVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSA----ELAWHIS-PLVPFIPNGTGDLFSALLLARLLE-G 230 (281)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccch----hhhhhhh-hcCCCCCCCchHHHHHHHHHHHHc-C
Confidence 999999999999999999999998765 22 23333332212 2333444 567767999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy11349 321 HNVKESLERTIATIQSVLERTAQSFPN 347 (360)
Q Consensus 321 ~~l~~A~~~A~a~~~~~l~~t~~~~~~ 347 (360)
.++.+|++.+.++++.+++.|.+.+..
T Consensus 231 ~~~~~al~~~~~~V~evl~~T~~~~~~ 257 (281)
T COG2240 231 LSLTQALERATAAVYEVLQETQKLGSD 257 (281)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999886553
No 3
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-37 Score=279.58 Aligned_cols=246 Identities=22% Similarity=0.299 Sum_probs=206.6
Q ss_pred ccceeeecccccc-------cccccCCchhhhhcCeeeeeeeeeeecCCCCCCcc--ccccCCHHHHHHHHHHhhhCCCC
Q psy11349 88 ERTIATIQSVLER-------TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHL--KGKVITEQDFDELIEGLKMNDLM 158 (360)
Q Consensus 88 ~~~vl~I~~~~~~-------~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~--~g~~l~~~~l~~ll~~~~~~~~~ 158 (360)
.+++|+|.|+|++ |.++|. ++..+|+ ..+++++.||+.++..+ ..+++..+|++.++++++
T Consensus 3 ~~~~LtIAGsD~sGGAGIqADLKTf~---a~gvyg~--saITaltaQNt~gV~~v~~v~~~~v~~Ql~av~~D~~----- 72 (263)
T COG0351 3 LPVVLTIAGSDSSGGAGIQADLKTFQ---ALGVYGM--SAITALTAQNTLGVHGVHPVPPEFVEAQLDAVFSDIP----- 72 (263)
T ss_pred CceEEEEeccCCCccHHHHHHHHHHH---hcCCccc--eEEEEEEEeecCceeeEEeCCHHHHHHHHHHHhhcCC-----
Confidence 4689999999998 555666 6666666 66777888898875443 345566788999999986
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhcc
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAELLT 237 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~ 237 (360)
++++++||+++.+.++.+.+.++++. . .++|+||||..+ |..+..++..+.++++++|+++++|||..|++.|+
T Consensus 73 -v~avKtGML~~~eiie~va~~l~~~~---~-~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~ 147 (263)
T COG0351 73 -VDAVKTGMLGSAEIIEVVAEKLKKYG---I-GPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALS 147 (263)
T ss_pred -CCEEEECCcCCHHHHHHHHHHHHhcC---C-CcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHc
Confidence 99999999999999999988887753 2 469999999987 77888899999999999999999999999999999
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHH
Q psy11349 238 KI-PIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAY 315 (360)
Q Consensus 238 g~-~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~ 315 (360)
|. ++.+.+++.++++.+.+.|+++|+|||+|+.. .+.++++. + +..+.++.++++.. ++||||+|++++++.
T Consensus 148 g~~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~-~~~D~l~~-~----~~~~~f~~~ri~t~~tHGTGCTlSaAIaa~ 221 (263)
T COG0351 148 GLPKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG-EAVDVLYD-G----GSFYTFEAPRIPTKNTHGTGCTLSAAIAAN 221 (263)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC-CceeEEEc-C----CceEEEeccccCCCCCCCccHHHHHHHHHH
Confidence 95 88899999999999999999999999999766 44555542 2 45778899999988 999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcCCCCCcC
Q psy11349 316 ITRTNHNVKESLERTIATIQSVLERTAQSFPNKGSSKASVPAFV 359 (360)
Q Consensus 316 L~~~g~~l~~A~~~A~a~~~~~l~~t~~~~~~~~~~~~~~~~~~ 359 (360)
|++ |.++++|++.|..|+..+|+++...|.+ .++++|+.
T Consensus 222 LA~-G~~l~~AV~~Ak~fv~~AI~~~~~~G~g----~gpv~~~~ 260 (263)
T COG0351 222 LAK-GLSLEEAVKKAKEFVTRAIRDSLAIGHG----HGPVNHFA 260 (263)
T ss_pred HHc-CCCHHHHHHHHHHHHHHHHhhhccCCCc----cccCCccc
Confidence 999 9999999999999999999977655554 56666653
No 4
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=100.00 E-value=3.8e-35 Score=274.67 Aligned_cols=259 Identities=27% Similarity=0.426 Sum_probs=210.9
Q ss_pred ccceeeecccccc----cccccCCchhhhhcCeeeeeeeeeeecCCCCCCccccccCCHHHHHHHHHHhhhCCC-CccCE
Q psy11349 88 ERTIATIQSVLER----TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDL-MDYTH 162 (360)
Q Consensus 88 ~~~vl~I~~~~~~----~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~~g~~l~~~~l~~ll~~~~~~~~-~~~d~ 162 (360)
+++||+||+++.+ ...+++ .|+++|++++.++|+..++|++|..+.+..++.+.+++.++.+....+ .++|+
T Consensus 15 ~~~vl~i~~~~~~G~v~~~~a~~---~l~~~G~~v~~lpTv~~s~~~~y~~~~~~~~~~~~i~~~l~~~~~~~~l~~~d~ 91 (281)
T PRK08176 15 QADIVAVQSQVVYGSVGNSIAVP---AIKANGLRVFAVPTVLLSNTPHYPTFYGGAIPDEWFSGYLRALQERDALRQLRA 91 (281)
T ss_pred cceEEEEeceeeecccccHHHHH---HHHHcCCcccccceEeecCCCCCCCcCCeeCCHHHHHHHHHHHHhcCccccCCE
Confidence 5679999999887 333333 599999999999999999999998887777777888888888776543 47899
Q ss_pred EEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCC-CCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCC
Q psy11349 163 VLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNG-RMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPI 241 (360)
Q Consensus 163 i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g-~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~ 241 (360)
|++||++++++.+.+.+++++++..+++.++|+||++++++ ..|..++..+.+++.+++++|++|||..|++.|+|.++
T Consensus 92 i~~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~ 171 (281)
T PRK08176 92 VTTGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEILTGKPC 171 (281)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHHhCCCC
Confidence 99999999999999999999887654557899999999975 47777788888876789999999999999999999887
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccCC-CceEEEEEeeeccCCceEEEEEecccCCcccCchHHHHHHHHHHHHcCC
Q psy11349 242 KDKASLLKTINVLHDRGIKTVVISSSELGP-EKHLLGVASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTN 320 (360)
Q Consensus 242 ~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~v~~~t~GaGD~f~a~~~a~L~~~g 320 (360)
.+.+++.+++++|++.|++.|+||+++.|. ++....+..+. ++.+..+.+..+..++||||+|+|+|++++++ |
T Consensus 172 ~~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~GaGD~faa~~~a~l~~-g 246 (281)
T PRK08176 172 RTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTA----DSVNVISHPRVDTDLKGTGDLFCAELVSGLLK-G 246 (281)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeC----CceEEEecCccCCCCCChhHHHHHHHHHHHhc-C
Confidence 777888999999999999999999776652 23222221212 34444555555545999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcCCCCCc
Q psy11349 321 HNVKESLERTIATIQSVLERTAQSFPNKGSSKASVPAF 358 (360)
Q Consensus 321 ~~l~~A~~~A~a~~~~~l~~t~~~~~~~~~~~~~~~~~ 358 (360)
+++++|+++|..+++.+++.+.+ .+..+..++++
T Consensus 247 ~~l~~Av~~A~~~v~~~i~~t~~----~~~~~~~~~~~ 280 (281)
T PRK08176 247 KALTDAAHRAGLRVLEVMRYTQQ----AGSDELILPPL 280 (281)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH----cCCccccccCC
Confidence 99999999999999999999976 44667766653
No 5
>PRK05756 pyridoxamine kinase; Validated
Probab=100.00 E-value=9.4e-35 Score=272.92 Aligned_cols=250 Identities=32% Similarity=0.454 Sum_probs=210.5
Q ss_pred ccceeeecccccc-cccccCCchhhhhcCeeeeeeeeeeecCCCCCCccccccCCHHHHHHHHHHhhhCCC-CccCEEEE
Q psy11349 88 ERTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDL-MDYTHVLT 165 (360)
Q Consensus 88 ~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~~g~~l~~~~l~~ll~~~~~~~~-~~~d~i~~ 165 (360)
+++||+|++++++ .+..-++...|+++|+++..++|++.++|++|..+.|..+++++++.++++++..++ ..++++++
T Consensus 1 ~~~il~i~~~~~~G~~g~~~~~~~l~~~g~~~~~~~T~~~s~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 80 (286)
T PRK05756 1 MKNILSIQSHVVYGHVGNSAAVFPMQRLGVNVWPLNTVQFSNHTGYGKWTGCVMPPSHLTEIVQGIADIGWLGECDAVLS 80 (286)
T ss_pred CCcEEEEeceeecccccchhHHHHHHHcCCcceeeceEeecCCCCCCCccCeeCCHHHHHHHHHHHHhcCccccCCEEEE
Confidence 3589999999998 222222333699999999999999999999988888989988899999999976543 46889999
Q ss_pred eeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCCCH
Q psy11349 166 GYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDK 244 (360)
Q Consensus 166 G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~~~ 244 (360)
|++++.+..+.+.++++++++.++++.+++|||++++ +..|..++..+.+++.+++++|++|||..|++.|+|.+..+.
T Consensus 81 G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g~~~~~~ 160 (286)
T PRK05756 81 GYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELEWLSGRPVETL 160 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHHHHhCCCcCCH
Confidence 9999999999999999999877766789999999995 557777888888877799999999999999999999887778
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccCC--C---ceEEEEEeeeccCCceEEEEEecccCC-c-ccCchHHHHHHHHHHHH
Q psy11349 245 ASLLKTINVLHDRGIKTVVISSSELGP--E---KHLLGVASTVVGGSKTTVSINIPQFDA-S-FTGTGDLFAALMLAYIT 317 (360)
Q Consensus 245 ~d~~~aa~~l~~~g~~~Vlvtg~~~g~--~---g~~~~~~~~~~~~~~~~~~~~~~~v~~-~-t~GaGD~f~a~~~a~L~ 317 (360)
+++.++++++++.|++.|+||+++.+. + |++++ . + ++.++++.++++. . ++||||+|+|+|+++|+
T Consensus 161 ~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~--~-~----~~~~~~~~~~~~~~v~~~GaGD~f~a~~~a~l~ 233 (286)
T PRK05756 161 EDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLV--T-A----DGAWHISRPLVDFMRQPVGVGDLTSALFLARLL 233 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEE--E-C----CceEEEecCccCCCCCCCChHHHHHHHHHHHHh
Confidence 889999999999999999999765431 1 33322 2 3 4566677777887 4 99999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q psy11349 318 RTNHNVKESLERTIATIQSVLERTAQSF 345 (360)
Q Consensus 318 ~~g~~l~~A~~~A~a~~~~~l~~t~~~~ 345 (360)
+ |+++++|+++|+++++.+|+++.+.+
T Consensus 234 ~-g~~~~~al~~A~~~~~~~i~~~~~~~ 260 (286)
T PRK05756 234 Q-GGSLEEALEHTTAAVYEVMARTKERG 260 (286)
T ss_pred c-CCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9 99999999999999999999997743
No 6
>PLN02978 pyridoxal kinase
Probab=100.00 E-value=9.7e-35 Score=274.91 Aligned_cols=251 Identities=42% Similarity=0.711 Sum_probs=212.4
Q ss_pred ccceeeecccccc-----cccccCCchhhhhcCeeeeeeeeeeecCCCCCCccccccCCHHHHHHHHHHhhhCCCCccCE
Q psy11349 88 ERTIATIQSVLER-----TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDLMDYTH 162 (360)
Q Consensus 88 ~~~vl~I~~~~~~-----~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~~g~~l~~~~l~~ll~~~~~~~~~~~d~ 162 (360)
.++|++||+++.+ .+.+|+ |+++|+++++++|+++|||++|..+.+..++.++++.++++++..++..+++
T Consensus 14 ~~~vl~iqs~~~~g~~g~~~a~~p----l~~~g~~v~~lpTv~lSnhtgy~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 89 (308)
T PLN02978 14 TGRVLSIQSHTVHGYVGNKSAVFP----LQLLGFDVDPINSVQFSNHTGYPTFKGQVLDGEQLWALIEGLEANGLLFYTH 89 (308)
T ss_pred CCcEEEEeCeeeecCCCceehHhh----HHHcCCeeeeeccEeecCCCCCCCceeeeCCHHHHHHHHHHHHHcCCcccCE
Confidence 5789999988766 677887 8999999999999999999999999999999889999999998765534899
Q ss_pred EEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCC
Q psy11349 163 VLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIK 242 (360)
Q Consensus 163 i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~ 242 (360)
+++|+++++++.+.+.++++++++.++++++|+||+++++|..|..++..+.+++.+++.+|+++||..|++.|+|.++.
T Consensus 90 i~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L~g~~~~ 169 (308)
T PLN02978 90 LLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQLTGIRIV 169 (308)
T ss_pred EEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHHhCCCCC
Confidence 99999999999999999999988766668899999999888888777888888667999999999999999999998777
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeecc--CCceEEEEEecccCCcccCchHHHHHHHHHHHHcCC
Q psy11349 243 DKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVG--GSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTN 320 (360)
Q Consensus 243 ~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~--~~~~~~~~~~~~v~~~t~GaGD~f~a~~~a~L~~~g 320 (360)
+.+++.++++++.+.|++.|+|||.+.+ |.+.......+. ..++.+++..++++..++||||+|+|++++.+++ |
T Consensus 170 ~~~~~~~a~~~l~~~g~~~VVITs~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~GtGD~fsA~laa~l~~-g 246 (308)
T PLN02978 170 TEEDAREACAILHAAGPSKVVITSIDID--GKLLLVGSHRKEKGARPEQFKIVIPKIPAYFTGTGDLMAALLLGWSHK-Y 246 (308)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEEecCC--CCEEEEEecccccCCCCceEEEEccCCCCCCCCchHHHHHHHHHHHhc-C
Confidence 7778889999999999999999986543 323222110000 0024567778888777899999999999999998 8
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHhhC
Q psy11349 321 -HNVKESLERTIATIQSVLERTAQSF 345 (360)
Q Consensus 321 -~~l~~A~~~A~a~~~~~l~~t~~~~ 345 (360)
.++++|++.|.++++.+|++|.+.+
T Consensus 247 ~~~l~~A~~~A~~~v~~~i~~t~~~~ 272 (308)
T PLN02978 247 PDNLDKAAELAVSSLQAVLRRTLADY 272 (308)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999998854
No 7
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=100.00 E-value=2.3e-33 Score=263.50 Aligned_cols=248 Identities=36% Similarity=0.553 Sum_probs=205.8
Q ss_pred cceeeecccccc----cccccCCchhhhhcCeeeeeeeeeeecCCCCCCccccccCCHHHHHHHHHHhhhCCC-CccCEE
Q psy11349 89 RTIATIQSVLER----TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDL-MDYTHV 163 (360)
Q Consensus 89 ~~vl~I~~~~~~----~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~~g~~l~~~~l~~ll~~~~~~~~-~~~d~i 163 (360)
++||+|++.+.+ ...+.+ .|+++|++++.++|+++++|++|..+.|..++.++++.+++.++...+ .++|++
T Consensus 2 ~~vl~i~~~~~~g~~~~~~~~~---~l~~~g~~~~~~pT~~~s~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (286)
T TIGR00687 2 KNVLSIQSHVVYGHVGNRAATF---PLQRLGFEVWAVNTVQFSNHTGYGKWTGQVLPPDELTELVDGLAAINKLNQCDAV 78 (286)
T ss_pred CeEEEEcCceecccccCchHHH---HHHHcCCcceeeCcEEcCCCCCCCCCcCeECCHHHHHHHHHHHHhcCccccCCEE
Confidence 589999998877 233333 599999999999999999999999999999998999999999864433 578999
Q ss_pred EEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCC-CCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCC
Q psy11349 164 LTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNG-RMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIK 242 (360)
Q Consensus 164 ~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g-~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~ 242 (360)
++|++++.++.+.+.++++.+++.++++++++||++++.+ ..|..++..+.+++++++++|+++||..|++.|+|.+..
T Consensus 79 ~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~~L~g~~~~ 158 (286)
T TIGR00687 79 LSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELELLTGRKIN 158 (286)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHHHHhCCCcC
Confidence 9999999999999999999998877778899999999874 355566777888777899999999999999999998877
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccCCCce-----EEEEEeeeccCCceEEEEEecccCC-c-ccCchHHHHHHHHHH
Q psy11349 243 DKASLLKTINVLHDRGIKTVVISSSELGPEKH-----LLGVASTVVGGSKTTVSINIPQFDA-S-FTGTGDLFAALMLAY 315 (360)
Q Consensus 243 ~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~-----~~~~~~~~~~~~~~~~~~~~~~v~~-~-t~GaGD~f~a~~~a~ 315 (360)
+.+++.+++++|++.|++.|+||+ .|.+|+ +..+...+ ++.++.+.+..+. . ++||||+|+|+|+++
T Consensus 159 ~~~~~~~~~~~l~~~g~~~Viit~--~g~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~GaGD~f~A~~l~~ 232 (286)
T TIGR00687 159 TVEEALAAADALIAMGPDIVLVTH--LARAGSQRDRDFEGLVVTQ----EGRWHISRPLAVFMRQPVGTGDLIAALLLAT 232 (286)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEe--ccccCCCCCcceeEEEEcC----CceEEEeccCcCCCCCCCChHHHHHHHHHHH
Confidence 778899999999999999999993 344443 11111112 4455666666663 4 899999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Q psy11349 316 ITRTNHNVKESLERTIATIQSVLERTAQSFP 346 (360)
Q Consensus 316 L~~~g~~l~~A~~~A~a~~~~~l~~t~~~~~ 346 (360)
|++ |+++++|+++|+++++.+++++.+.+.
T Consensus 233 l~~-g~~~~~al~~A~~~v~~~l~~t~~~~~ 262 (286)
T TIGR00687 233 LLH-GNSLKEALEKTVSAVYHVLVTTIALGK 262 (286)
T ss_pred Hhc-CCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999 999999999999999999999987654
No 8
>PTZ00344 pyridoxal kinase; Provisional
Probab=100.00 E-value=1.5e-32 Score=259.01 Aligned_cols=256 Identities=39% Similarity=0.662 Sum_probs=209.0
Q ss_pred ccccceeeecccccc-cccccCCchhhhhcCeeeeeeeeeeecCCCCCCccccccCCHHHHHHHHHHhhhCCC-CccCEE
Q psy11349 86 SLERTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDL-MDYTHV 163 (360)
Q Consensus 86 ~~~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~~g~~l~~~~l~~ll~~~~~~~~-~~~d~i 163 (360)
.++++||+|++++++ ......+...++.+|+++.+++|++++++++|..+.|..++.++++.+++.+.+..+ .++++|
T Consensus 2 ~~~~~vl~i~~~~~~G~~G~~~~~~~l~~~g~~~~~~~tv~ls~~~~~~~~~g~~i~~~~~~~~l~~l~~~~~~~~~~~v 81 (296)
T PTZ00344 2 SMEKKVLSIQSHVTHGYVGNRAATFPLQLLGFDVDFVNTVQLSNHTGYPVIKGHRLDLNELITLMDGLRANNLLSDYTYV 81 (296)
T ss_pred CCCCeEEEEcceeecccccchhHHHHHHHcCCcceeeccEecCCCCCCCCccCeeCCHHHHHHHHHHHHhcCCcccCCEE
Confidence 467899999999998 222112233688999999999999999999987788899999899999999876443 357899
Q ss_pred EEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCCC
Q psy11349 164 LTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKD 243 (360)
Q Consensus 164 ~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~~ 243 (360)
++|++++.+..+.+.++++.+++.++++++|+|||+++.|.+|..++..+.++ ++++++|+++||+.|++.|+|.+..+
T Consensus 82 ~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~-~ll~~~dii~pN~~E~~~L~g~~~~~ 160 (296)
T PTZ00344 82 LTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYR-ELIPYADVITPNQFEASLLSGVEVKD 160 (296)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHH-HHhhhCCEEeCCHHHHHHHhCCCCCC
Confidence 99999999999999999988887765578999999998888887777778775 88999999999999999999987777
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccccCCCc----eEEEEEeeeccCCceEEEEEecccCCcccCchHHHHHHHHHHHHcC
Q psy11349 244 KASLLKTINVLHDRGIKTVVISSSELGPEK----HLLGVASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRT 319 (360)
Q Consensus 244 ~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g----~~~~~~~~~~~~~~~~~~~~~~~v~~~t~GaGD~f~a~~~a~L~~~ 319 (360)
.+++.++++++.+.|++.|+|||++++.+| +++.....+ ...++.+.+..++++..++||||+|+|+|++.+++
T Consensus 161 ~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~GaGD~f~A~~~a~l~~- 238 (296)
T PTZ00344 161 LSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKD-TKNNKRFTGKVPYIEGRYTGTGDLFAALLLAFSHQ- 238 (296)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEecccc-CCCceeEEEeccccCCCCCCchHHHHHHHHHHHhc-
Confidence 788888999999889999999998877665 222211100 00023456777777766899999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhC
Q psy11349 320 NHNVKESLERTIATIQSVLERTAQSF 345 (360)
Q Consensus 320 g~~l~~A~~~A~a~~~~~l~~t~~~~ 345 (360)
| ++++|+++|.++++.+|+++.+.+
T Consensus 239 g-~~~~a~~~A~a~~~~~i~~~~~~~ 263 (296)
T PTZ00344 239 H-PMDLAVGKAMGVLQDIIKATRESG 263 (296)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8 999999999999999999998755
No 9
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=100.00 E-value=6.8e-33 Score=254.58 Aligned_cols=226 Identities=28% Similarity=0.417 Sum_probs=172.3
Q ss_pred chhhhhcCeeeeeeeeee-ecCCCCCCccc--cccCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHH
Q psy11349 108 KGQYEVLGFEVDAINTVQ-FSNHSGYGHLK--GKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKEL 184 (360)
Q Consensus 108 ~~~l~~~G~~~~~i~t~~-~s~~~~~~~~~--g~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~ 184 (360)
+..++.+|+....++|.. .||+.++.... ..++-.+|++.+++++ ++++|++||+++.++++.+.++++.
T Consensus 12 i~t~~a~G~~~~~v~Talt~qn~~~~~~~~~~~~~~~~~ql~~~~~~~------~~~aikiG~l~~~~~v~~i~~~l~~- 84 (246)
T PF08543_consen 12 IKTISALGVHGCPVPTALTSQNTYGVFDIEPVDSEMIKAQLDALLEDM------KFDAIKIGYLGSAEQVEIIADFLKK- 84 (246)
T ss_dssp HHHHHHTTEEEEEEEEEEEEEETTEEEEEEE--HHHHHHHHHHHHHTS------C-SEEEE-S-SSHHHHHHHHHHHHH-
T ss_pred HHHHHHcCCccceEeEEEEecCCcceEEEEECCHHHHHHHHHHhcccc------cccEEEEcccCCchhhhhHHHHHhc-
Confidence 335668899888877764 46655543321 1222345566666554 4999999999999999999888853
Q ss_pred HhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEE
Q psy11349 185 KKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVV 263 (360)
Q Consensus 185 ~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vl 263 (360)
++.++|+|||++++ |..+..++..+.+++++++.+|+||||..|++.|+|.++.+.+++.+++++|+++|++.|+
T Consensus 85 ----~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i~~~~~~~~~~~~l~~~G~~~Vv 160 (246)
T PF08543_consen 85 ----PKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGREINSEEDIEEAAKALLALGPKNVV 160 (246)
T ss_dssp ----TTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS--SSHHHHHHHHHHHHHTS-SEEE
T ss_pred ----cCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCCCChHhHHHHHHHHHHhCCceEE
Confidence 34799999999976 5566778899999877999999999999999999999999999999999999999999999
Q ss_pred EeccccC-CCce-EEEEEeeeccCCceEEEEEecccC-CcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 264 ISSSELG-PEKH-LLGVASTVVGGSKTTVSINIPQFD-ASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 264 vtg~~~g-~~g~-~~~~~~~~~~~~~~~~~~~~~~v~-~~t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
|||++.. .++. .+++. .+ ++.+.+..++.+ ..++||||+|+|+|+++|++ |+++++|++.|..+++.+|++
T Consensus 161 Itg~~~~~~~~~~~~~l~-~~----~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~-g~~l~~Av~~A~~~v~~~i~~ 234 (246)
T PF08543_consen 161 ITGGHLDGDEGIITDVLY-DG----GEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAK-GYSLEEAVEKAKNFVRRAIKN 234 (246)
T ss_dssp EEEEEGGSSCEEEEEEEE-TT----SEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHH
T ss_pred Eeeeccccccccccceee-ec----cceeecceeEEcCCCCCCchhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHH
Confidence 9999873 3333 34443 23 677888888888 45999999999999999999 999999999999999999999
Q ss_pred HHhhCCCCCC
Q psy11349 341 TAQSFPNKGS 350 (360)
Q Consensus 341 t~~~~~~~~~ 350 (360)
+.+.|++.|+
T Consensus 235 t~~~g~~~~~ 244 (246)
T PF08543_consen 235 TIQLGMGAGP 244 (246)
T ss_dssp HHHCTSSS-B
T ss_pred HhcCCCCCCC
Confidence 9998887765
No 10
>PRK12412 pyridoxal kinase; Reviewed
Probab=100.00 E-value=4.6e-32 Score=252.28 Aligned_cols=246 Identities=19% Similarity=0.180 Sum_probs=187.3
Q ss_pred cceeeecccccc-cccccCCchhhhhcCeeeeeeeee-eecCCCC--CCcc--ccccCCHHHHHHHHHHhhhCCCCccCE
Q psy11349 89 RTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTV-QFSNHSG--YGHL--KGKVITEQDFDELIEGLKMNDLMDYTH 162 (360)
Q Consensus 89 ~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~-~~s~~~~--~~~~--~g~~l~~~~l~~ll~~~~~~~~~~~d~ 162 (360)
+.||+|.|+|++ ++..-+.+..++++|+....+.|. +.||+.+ +... ...++..+|++.++++++ +++
T Consensus 2 ~~vl~iag~D~sggaGi~aD~~t~~~lg~~~~~v~Ta~t~q~~~~~~~~~v~~~~~~~i~~q~~~l~~d~~------~~~ 75 (268)
T PRK12412 2 NKALTIAGSDTSGGAGIQADLKTFQELGVYGMTSLTTIVTMDPHNGWAHNVFPIPASTLKPQLETTIEGVG------VDA 75 (268)
T ss_pred CeEEEEEeeCCCchHHHHHHHHHHHHcCCeeceeeeEEEeEcCCCCcEEEEEeCCHHHHHHHHHHHHhCCC------CCE
Confidence 578999999999 333333344455667766555444 5666543 2222 223444677888888875 899
Q ss_pred EEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCC
Q psy11349 163 VLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPI 241 (360)
Q Consensus 163 i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~ 241 (360)
|++||+++.+..+.+.+++++. + ..++|+||++.++ |..+..++..+.+++++++++|++|||..|++.|+|.++
T Consensus 76 ikiG~l~~~~~v~~i~~~~~~~---~-~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~ 151 (268)
T PRK12412 76 LKTGMLGSVEIIEMVAETIEKH---N-FKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGVKI 151 (268)
T ss_pred EEECCCCCHHHHHHHHHHHHhc---C-CCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCcCC
Confidence 9999999998888887777643 2 1249999999987 444445555666666789999999999999999999888
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccCC-CceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHHcC
Q psy11349 242 KDKASLLKTINVLHDRGIKTVVISSSELGP-EKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYITRT 319 (360)
Q Consensus 242 ~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~~~ 319 (360)
.+.+++.+++++|.++|++.|+||+++.|. ++..+++.. + +..++++.++++.. ++||||+|+|+|+++|++
T Consensus 152 ~~~~~~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~-~----~~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l~~- 225 (268)
T PRK12412 152 NSLEDMKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYD-G----ETFDLLESEKIDTTNTHGAGCTYSAAITAELAK- 225 (268)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEe-C----CEEEEEEeCccCCCCCCchHHHHHHHHHHHHHC-
Confidence 788899999999999999999999776553 233333322 2 44467788888877 899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy11349 320 NHNVKESLERTIATIQSVLERTAQSFPNKGS 350 (360)
Q Consensus 320 g~~l~~A~~~A~a~~~~~l~~t~~~~~~~~~ 350 (360)
|+++++|+++|.++++.+++++.+.|++.++
T Consensus 226 g~~l~eA~~~A~~~~~~~i~~~~~~g~g~~~ 256 (268)
T PRK12412 226 GKPVKEAVKTAKEFITAAIRYSFKINEYVGP 256 (268)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 9999999999999999999999887776544
No 11
>PRK12616 pyridoxal kinase; Reviewed
Probab=100.00 E-value=6.9e-32 Score=251.30 Aligned_cols=242 Identities=20% Similarity=0.243 Sum_probs=187.7
Q ss_pred ccceeeecccccc-------cccccCCchhhhhcCeeeeeeeeeeecCCCCC--Ccc--ccccCCHHHHHHHHHHhhhCC
Q psy11349 88 ERTIATIQSVLER-------TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGY--GHL--KGKVITEQDFDELIEGLKMND 156 (360)
Q Consensus 88 ~~~vl~I~~~~~~-------~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~--~~~--~g~~l~~~~l~~ll~~~~~~~ 156 (360)
++.||+|.|+|++ |..+|. +|..+|+ ..+++.+.||+.++ ... ...++..+|++.++++++
T Consensus 3 ~~~vl~iaG~D~sggaGi~aD~~t~~---~~g~~~~--~~~T~~t~q~~~~~~~~~v~~~~~~~i~~ql~~l~~d~~--- 74 (270)
T PRK12616 3 MHKALTIAGSDSSGGAGIQADLKTFQ---EKNVYGM--TALTVVVAMDPENSWDHQVFPIDTDTIRAQLSTIVDGIG--- 74 (270)
T ss_pred CCeEEEEEeeCCCchHHHHHHHHHHH---HcCCccc--ceeeEEeeEeCCCcceeEEEECCHHHHHHHHHHHHcCCC---
Confidence 4689999999998 555665 5555555 44455566776642 221 233445678899988885
Q ss_pred CCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHh
Q psy11349 157 LMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAEL 235 (360)
Q Consensus 157 ~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~ 235 (360)
+++|++||+++.+..+.+.+++++++ ..++|+|||++++ |..+..++..+.+++.+++.+|++|||..|++.
T Consensus 75 ---~~aikiG~l~s~~~i~~i~~~l~~~~----~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~ 147 (270)
T PRK12616 75 ---VDAMKTGMLPTVDIIELAADTIKEKQ----LKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQ 147 (270)
T ss_pred ---CCEEEECCCCCHHHHHHHHHHHHhcC----CCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHH
Confidence 89999999999999888888886542 1369999999875 444444667777776788999999999999999
Q ss_pred ccCC-CCCCHHHHHHHHHHHHhcCCCEEEEeccccCC-CceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHH
Q psy11349 236 LTKI-PIKDKASLLKTINVLHDRGIKTVVISSSELGP-EKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALM 312 (360)
Q Consensus 236 L~g~-~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~ 312 (360)
|+|. +..+.+++.+++++|.+.|++.|+||+++.|. +...+++.. + ++.++++.++++.. ++||||+|+|+|
T Consensus 148 L~g~~~~~~~~~~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~-~----~~~~~~~~~~~~~~~t~GaGD~fsaal 222 (270)
T PRK12616 148 LSGMGEIKTVEQMKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYD-G----ETAEVLESEMIDTPYTHGAGCTFSAAV 222 (270)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEE-C----CeEEEEEeeeeCCCCCCcHHHHHHHHH
Confidence 9997 56677889999999999999999999776542 222233322 2 45567788888877 899999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy11349 313 LAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKGS 350 (360)
Q Consensus 313 ~a~L~~~g~~l~~A~~~A~a~~~~~l~~t~~~~~~~~~ 350 (360)
+++|++ |+++++|+++|.++++.+|+++.+.|++.++
T Consensus 223 aa~l~~-g~~l~~Av~~A~~~~~~~i~~s~~~g~~~~~ 259 (270)
T PRK12616 223 TAELAK-GSEVKEAIYAAKEFITAAIKESFPLNQYVGP 259 (270)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 999999 9999999999999999999999887765444
No 12
>PRK07105 pyridoxamine kinase; Validated
Probab=100.00 E-value=1.6e-31 Score=250.70 Aligned_cols=249 Identities=23% Similarity=0.360 Sum_probs=197.3
Q ss_pred ccccceeeecccccc-cccccCCchhhhhcCeeeeeeeeeeecCCCC-CCccccccCCHHHHHHHHHHhhhCCCCccCEE
Q psy11349 86 SLERTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTVQFSNHSG-YGHLKGKVITEQDFDELIEGLKMNDLMDYTHV 163 (360)
Q Consensus 86 ~~~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~-~~~~~g~~l~~~~l~~ll~~~~~~~~~~~d~i 163 (360)
.++++||++++.+.+ ++..-+++..++.+|+++..++|++.+++++ |..+.+..+ .+|++.+++.+...++ .+|+|
T Consensus 2 ~~~~~vl~~~d~~~~G~aG~~adi~~~~~~g~~~~~v~T~~~~q~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~ai 79 (284)
T PRK07105 2 NPVKRVAAIHDLSGFGRVALTASIPIMSSMGLQVCPLPTALLSSHTGGFQNPSIIDL-TDGMQAFLTHWKSLNL-KFDAI 79 (284)
T ss_pred CCCCeEEEEecccccceehHhhHHHHHHHcCCcceeccceEeccCCCCCCCCeEeec-HHHHHHHHHHHHHcCC-ccCEE
Confidence 456799999998866 3333333446889999999999998777775 776655555 6789999997776554 68999
Q ss_pred EEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCC--CcCcHHHHHHhhcccceEEeCCHHHHHhccCCCC
Q psy11349 164 LTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYV--PEEVLPIYANELLSVADVICPNQFEAELLTKIPI 241 (360)
Q Consensus 164 ~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~--~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~ 241 (360)
++||++++++.+.+.++++.+++.+ +++++||++++++..|. .++..+.++ ++++++|++|||..|++.|+|.++
T Consensus 80 k~G~l~~~~~~~~v~~~~~~~~~~~--~~vv~DPv~~~~~~l~~~~~~~~~~~~~-~ll~~advitpN~~Ea~~L~g~~~ 156 (284)
T PRK07105 80 YSGYLGSPRQIQIVSDFIKYFKKKD--LLVVVDPVMGDNGKLYQGFDQEMVEEMR-KLIQKADVITPNLTEACLLLDKPY 156 (284)
T ss_pred EECcCCCHHHHHHHHHHHHHhccCC--CeEEECCccccCCcCCCCCCHHHHHHHH-HHHhhCCEecCCHHHHHHHcCCCc
Confidence 9999999999999999998876544 88999999987766553 456667775 789999999999999999999765
Q ss_pred C----CHHHHHHHHHHHHhcCCCEEEEeccccC--CCceEEEEEeeeccCCceEEEEEecccCCcccCchHHHHHHHHHH
Q psy11349 242 K----DKASLLKTINVLHDRGIKTVVISSSELG--PEKHLLGVASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAY 315 (360)
Q Consensus 242 ~----~~~d~~~aa~~l~~~g~~~Vlvtg~~~g--~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~t~GaGD~f~a~~~a~ 315 (360)
. +.+++.++++++.+.|++.|+||++|.+ ..|.+++. ..+ +..+..+.+.++..++||||+|+|+|+++
T Consensus 157 ~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~-~~~----~~~~~~~~~~~~~~~~GaGD~f~aa~~~~ 231 (284)
T PRK07105 157 LEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYD-RAT----DRFWKVFCKYIPAHYPGTGDIFTSVITGS 231 (284)
T ss_pred CcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEe-CCC----CeEEEEeecccCCCcCChhHHHHHHHHHH
Confidence 3 4678889999999999999999987653 34544332 111 23455666666655999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q psy11349 316 ITRTNHNVKESLERTIATIQSVLERTAQSF 345 (360)
Q Consensus 316 L~~~g~~l~~A~~~A~a~~~~~l~~t~~~~ 345 (360)
|++ |+++++|+++|.++++.+++++...+
T Consensus 232 l~~-g~~l~~av~~A~~~~~~~i~~~~~~~ 260 (284)
T PRK07105 232 LLQ-GDSLPIALDRAVQFIEKGIRATLGLK 260 (284)
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999 99999999999999999999998765
No 13
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=100.00 E-value=8.7e-32 Score=248.57 Aligned_cols=235 Identities=20% Similarity=0.277 Sum_probs=183.3
Q ss_pred eeeecccccc-------cccccCCchhhhhcCeeeeeeeeeeecCCCCCCcc--ccccCCHHHHHHHHHHhhhCCCCccC
Q psy11349 91 IATIQSVLER-------TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHL--KGKVITEQDFDELIEGLKMNDLMDYT 161 (360)
Q Consensus 91 vl~I~~~~~~-------~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~--~g~~l~~~~l~~ll~~~~~~~~~~~d 161 (360)
||+|.|+|++ |..+|. +|..+|+ ..+++.+.||+.++..+ ....+-.+|++.++++++ ++
T Consensus 1 vl~iag~D~sggaGi~aD~~t~~---~~g~~~~--~v~T~~t~q~~~~v~~~~~~~~~~~~~q~~~~~~d~~------~~ 69 (254)
T TIGR00097 1 ALTIAGSDSGGGAGIQADLKTFS---ALGVFGT--SVITALTAQNTRGVTGVYPIPPDFVEAQLDAVFSDIP------VD 69 (254)
T ss_pred CEEEeeeCCCcHHHHHHHHHHHH---HcCCeec--ceeEEEEeEcCcceEEEEECCHHHHHHHHHHHHhCCC------CC
Confidence 6899999998 444555 4444444 34455567887775442 234455788999998875 89
Q ss_pred EEEEeeeCCHHHHHHHHHHHHHHHhcCCCc-eEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCC
Q psy11349 162 HVLTGYCRSPQLLSKIGELVKELKKANPTL-MYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKI 239 (360)
Q Consensus 162 ~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~-~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~ 239 (360)
+|++|++.+.+..+.+.+++++ .+ . ++|+||+++.+ |..+..++..+.+++++++++|+||||..|++.|+|.
T Consensus 70 aikiG~l~~~~~~~~i~~~~~~---~~--~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~ 144 (254)
T TIGR00097 70 AAKTGMLASAEIVEAVARKLRE---YP--VRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLGT 144 (254)
T ss_pred EEEECCcCCHHHHHHHHHHHHh---cC--CCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhCC
Confidence 9999999988877777666543 33 5 69999999865 6555555666666667889999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccCC-CceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHH
Q psy11349 240 PIKDKASLLKTINVLHDRGIKTVVISSSELGP-EKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYIT 317 (360)
Q Consensus 240 ~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~ 317 (360)
++.+.+++.++++.|.+.|++.|+||+++.+. ++..+++ . + ++.++++.++++.. ++||||+|+|+|+++|+
T Consensus 145 ~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~-~-~----~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la 218 (254)
T TIGR00097 145 KIRTEQDMIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLF-D-G----GEIHILKAPRIETKNTHGTGCTLSAAIAANLA 218 (254)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEE-E-C----CeEEEEEecccCCCCCCChHHHHHHHHHHHHH
Confidence 87777889999999999999999999776543 3432222 2 3 55667888888877 89999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy11349 318 RTNHNVKESLERTIATIQSVLERTAQSFPNK 348 (360)
Q Consensus 318 ~~g~~l~~A~~~A~a~~~~~l~~t~~~~~~~ 348 (360)
+ |+++++|+++|+++++.+++++.+.|++.
T Consensus 219 ~-g~~l~eA~~~A~~~~~~~i~~~~~~~~~~ 248 (254)
T TIGR00097 219 K-GLSLKEAVKEAKEFVTGAIRYGLNIGHGH 248 (254)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 9 99999999999999999999998776654
No 14
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=2.4e-31 Score=249.77 Aligned_cols=247 Identities=15% Similarity=0.214 Sum_probs=189.4
Q ss_pred ccceeeecccccc-------cccccCCchhhhhcCeeeeeeeeeeecCCCCCCcc--ccccCCHHHHHHHHHHhhhCCCC
Q psy11349 88 ERTIATIQSVLER-------TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHL--KGKVITEQDFDELIEGLKMNDLM 158 (360)
Q Consensus 88 ~~~vl~I~~~~~~-------~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~--~g~~l~~~~l~~ll~~~~~~~~~ 158 (360)
.+.||+|+|+|++ |..+|. +++.+|+ ..+++.+.||+.++... ....+..+|++.++++++
T Consensus 4 ~p~VLtIAGsDpsGGAGiqADlkt~~---alGv~g~--sviTalTaQnt~~V~~v~~v~~~~i~~Ql~all~D~~----- 73 (321)
T PTZ00493 4 VSNILSIAGSDSCGGAGMQADIKTAM---GLGCHCC--TALVVLTAQNTKEVKRIVEIEEKFIVEQLDSIFADVT----- 73 (321)
T ss_pred CCEEEEEeeeCCCCchHHHHHHHHHH---HcCCccc--eEEEEEEEEcCCceEEEEECCHHHHHHHHHHHHhCCC-----
Confidence 4679999999998 445655 5555555 45566677888775442 334555788999999886
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCC-CceEEEccccccC-CCCCCC-cCcHHHHHHhhcccceEEeCCHHHHHh
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANP-TLMYVCDPVMGDN-GRMYVP-EEVLPIYANELLSVADVICPNQFEAEL 235 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~-~~~vv~Dpv~~~~-g~~~~~-~~~~~~~~~~ll~~~diitpN~~E~~~ 235 (360)
+++|++|++++.+.++.+.++++...+.++ +.++|+|||+..+ |..+.. ++.++.+++.++|++++||||..|++.
T Consensus 74 -i~aIKiGmL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~ 152 (321)
T PTZ00493 74 -IDVVKLGVLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKV 152 (321)
T ss_pred -CCEEEECCcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHH
Confidence 899999999999999999999976631111 2359999999986 777766 367777877899999999999999999
Q ss_pred ccC-----CCCCCHHHHHHHHHHHHh-cCCCEEEEeccccCC----C---ceEEEEEee-----ec----c--CCc----
Q psy11349 236 LTK-----IPIKDKASLLKTINVLHD-RGIKTVVISSSELGP----E---KHLLGVAST-----VV----G--GSK---- 287 (360)
Q Consensus 236 L~g-----~~~~~~~d~~~aa~~l~~-~g~~~Vlvtg~~~g~----~---g~~~~~~~~-----~~----~--~~~---- 287 (360)
|+| .++ +.+++.+++++|++ .|++.|+|||+|... + -+.+++... +. . .++
T Consensus 153 L~g~~~~~~~~-~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~ 231 (321)
T PTZ00493 153 ILEALDCQMDL-SKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYL 231 (321)
T ss_pred HhCCCcccCCC-CHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCcccccccccccccccccccc
Confidence 998 332 46789999999986 699999999998641 1 133443110 00 0 001
Q ss_pred -eEEEEEecccCCc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy11349 288 -TTVSINIPQFDAS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPN 347 (360)
Q Consensus 288 -~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~t~~~~~~ 347 (360)
+.+++..++++.. ++||||+|+++++++|++ |+++++|++.|..|++.+|+++.+.+.+
T Consensus 232 ~~~~~~~~~ri~~~~~hGTGc~fASAIAa~LA~-G~~l~~Av~~A~~fv~~aI~~s~~~g~g 292 (321)
T PTZ00493 232 YDVYKLRSKRKPGKDIHGTGCTLSTAIACYLAK-KHNILQSCIESKKYIYNCIRYAYPFGSK 292 (321)
T ss_pred ceEEEEEecccCCCCCCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 2356788888865 899999999999999999 9999999999999999999999887653
No 15
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=100.00 E-value=3.5e-31 Score=246.10 Aligned_cols=246 Identities=20% Similarity=0.250 Sum_probs=187.5
Q ss_pred cccceeeecccccc-cccccCCchhhhhcCeeeeeeeeeeec-CCCCCCccc--cccCCHHHHHHHHHHhhhCCCCccCE
Q psy11349 87 LERTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTVQFS-NHSGYGHLK--GKVITEQDFDELIEGLKMNDLMDYTH 162 (360)
Q Consensus 87 ~~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~~~s-~~~~~~~~~--g~~l~~~~l~~ll~~~~~~~~~~~d~ 162 (360)
+++.||+|+|++++ ++...+++..++.+|+....++|++.+ ++.++.... ..+.-.+|++.++++. ++++
T Consensus 3 ~~~~vl~i~g~d~~ggaG~~adi~~~~~~g~~~~~v~Ta~~~q~~~~~~~~~~~~~~~~~~q~~~~~~~~------~~~a 76 (266)
T PRK06427 3 KRPIALTIAGSDSGGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVQRVHPIPPEFVAAQLDAVFSDI------RIDA 76 (266)
T ss_pred CCCEEEEEeecCCCCcHHHHHHHHHHHHcCCEEeeeeeEEEeecCCCeeEEEeCCHHHHHHHHHHHHhcC------CCCE
Confidence 35789999999999 555555556788999999988888654 555654321 1122245666666655 3899
Q ss_pred EEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCC
Q psy11349 163 VLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPI 241 (360)
Q Consensus 163 i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~ 241 (360)
+++|++++.++.+.+.+++++. + ..++++||+++++ +..+..++..+.+++++++++|++|||..|++.|+|.++
T Consensus 77 i~iG~l~~~~~~~~i~~~~~~~---~-~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~ 152 (266)
T PRK06427 77 VKIGMLASAEIIETVAEALKRY---P-IPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTGLPI 152 (266)
T ss_pred EEECCcCCHHHHHHHHHHHHhC---C-CCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCC
Confidence 9999999988877777766543 2 2479999999986 444555666677766789999999999999999999876
Q ss_pred CCHHH-HHHHHHHHHhcCCCEEEEeccc--cCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHH
Q psy11349 242 KDKAS-LLKTINVLHDRGIKTVVISSSE--LGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYIT 317 (360)
Q Consensus 242 ~~~~d-~~~aa~~l~~~g~~~Vlvtg~~--~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~ 317 (360)
.+.++ +.+++++|.++|++.|+||+++ .|.++. +++.. . ++.++++.++++.. ++||||+|+|+|+++|+
T Consensus 153 ~~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~-~~~~~-~----~~~~~~~~~~~~~~~~~GaGD~f~a~l~~~l~ 226 (266)
T PRK06427 153 ADTEDEMKAAARALHALGCKAVLIKGGHLLDGEESV-DWLFD-G----EGEERFSAPRIPTKNTHGTGCTLSAAIAAELA 226 (266)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcee-EEEEe-C----CcEEEEEeeeECCCCCCChHHHHHHHHHHHHH
Confidence 55554 7889999999999999999775 232222 12222 2 45567788888876 89999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q psy11349 318 RTNHNVKESLERTIATIQSVLERTAQSFPNKG 349 (360)
Q Consensus 318 ~~g~~l~~A~~~A~a~~~~~l~~t~~~~~~~~ 349 (360)
+ |+++++|+++|+++++.+++++.+.|++.+
T Consensus 227 ~-g~~l~~A~~~A~~~~~~~i~~~~~~~~~~~ 257 (266)
T PRK06427 227 K-GASLLDAVQTAKDYVTRAIRHALEIGQGHG 257 (266)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 9 999999999999999999999988776543
No 16
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.98 E-value=1.8e-30 Score=239.77 Aligned_cols=245 Identities=42% Similarity=0.710 Sum_probs=195.2
Q ss_pred ceeeecccccc-cccccCCchhhhhcCeeeeeeeeeeecCCCCCCccccccCCHHHHHHHHHHhhhCCC-CccCEEEEee
Q psy11349 90 TIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDL-MDYTHVLTGY 167 (360)
Q Consensus 90 ~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~~g~~l~~~~l~~ll~~~~~~~~-~~~d~i~~G~ 167 (360)
+||+|++++++ ++..-+.+..++.+|+++..++|.+.+.++++....+..+++++++.+++.+..... ..+++|++|+
T Consensus 1 ~vl~i~~~~~~g~ag~~ad~~~~~~~g~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 80 (254)
T cd01173 1 RVLSIQSHVVHGYVGNSAAVFPLQRLGWDVDALPTVQFSNHTGYGTWTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGY 80 (254)
T ss_pred CEEEEecceecceECCeeHHHHHHHcCCccceeCceecCCCCCCCCCCCeecCHHHHHHHHHHHHHcCCcccCCEEEEec
Confidence 58999999998 444444455788999999999999877777654345677888889988888876431 3678999999
Q ss_pred eCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCC-CcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCCCHHH
Q psy11349 168 CRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYV-PEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKAS 246 (360)
Q Consensus 168 l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~-~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~~~~d 246 (360)
+++.+..+.+.++++.++++.|++++++||++++++..|. .++..+.+++.+.+++|+++||..|++.|+|.+..+.++
T Consensus 81 l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~l~g~~~~~~~~ 160 (254)
T cd01173 81 LGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELELLTGKKINDLED 160 (254)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHHHcCCCcCCHHH
Confidence 9999999999999999887522389999999988766663 567777776444449999999999999999988877889
Q ss_pred HHHHHHHHHhcCCCEEEEeccccCCC---ceEEEEEeeeccCCceEEEEEecccC-Cc-ccCchHHHHHHHHHHHHcCCC
Q psy11349 247 LLKTINVLHDRGIKTVVISSSELGPE---KHLLGVASTVVGGSKTTVSINIPQFD-AS-FTGTGDLFAALMLAYITRTNH 321 (360)
Q Consensus 247 ~~~aa~~l~~~g~~~Vlvtg~~~g~~---g~~~~~~~~~~~~~~~~~~~~~~~v~-~~-t~GaGD~f~a~~~a~L~~~g~ 321 (360)
..+++++|.++|++.|+||+++...+ |++++. + ++.+.++.++++ .. ++||||+|+|+|+++|++ |+
T Consensus 161 ~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~---~----~~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~l~~-g~ 232 (254)
T cd01173 161 AKAAARALHAKGPKTVVVTSVELADDDRIEMLGST---A----TEAWLVQRPKIPFPAYFNGTGDLFAALLLARLLK-GK 232 (254)
T ss_pred HHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEe---c----CccEEEEeeccCCCCCcCChHHHHHHHHHHHHHc-CC
Confidence 99999999999999999996653212 333321 2 344556666666 35 999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy11349 322 NVKESLERTIATIQSVLERTA 342 (360)
Q Consensus 322 ~l~~A~~~A~a~~~~~l~~t~ 342 (360)
++++|+++|+++++.+|+++.
T Consensus 233 ~~~~a~~~A~~~~~~~i~~~~ 253 (254)
T cd01173 233 SLAEALEKALNFVHEVLEATY 253 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999874
No 17
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.97 E-value=3.3e-30 Score=236.14 Aligned_cols=234 Identities=20% Similarity=0.301 Sum_probs=179.7
Q ss_pred ceeeecccccc-cccccCCchhhhhcCeeeeeeeeeeecCCCCCCccccccCC----HHHHHHHHHHhhhCCCCccCEEE
Q psy11349 90 TIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVIT----EQDFDELIEGLKMNDLMDYTHVL 164 (360)
Q Consensus 90 ~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~~g~~l~----~~~l~~ll~~~~~~~~~~~d~i~ 164 (360)
.|++|+|++++ ++...+++..++.+|+++..++|...+.+++ ..+....++ .++++.+++++ ++++|+
T Consensus 1 ~vl~i~g~d~~ggag~~adi~~~~~~g~~~~~~~T~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~------~~~~i~ 73 (242)
T cd01169 1 VVLTIAGSDSSGGAGIQADLKTFAALGVYGMSVITALTAQNTL-GVFGVHPVPPEFVAAQLDAVLEDI------PVDAIK 73 (242)
T ss_pred CEEEEeeeCCCCHHHHHHHHHHHHHcCCEecceeEEEEeEcCc-ceeEEEECCHHHHHHHHHHHHhCC------CCCEEE
Confidence 37899999999 5555555668889999999888886655553 212222233 34555555543 489999
Q ss_pred EeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCCC
Q psy11349 165 TGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKD 243 (360)
Q Consensus 165 ~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~~ 243 (360)
+|++.+.+..+.+.+++++. ++.++++||+++++ +..+..++..+.+++.+++++|++|||..|++.|+|.+..+
T Consensus 74 ~G~l~~~~~~~~i~~~~~~~----~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~ 149 (242)
T cd01169 74 IGMLGSAEIIEAVAEALKDY----PDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLEIAT 149 (242)
T ss_pred ECCCCCHHHHHHHHHHHHhC----CCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCCCCC
Confidence 99999988888887777654 33789999999976 44555566666776677899999999999999999987766
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHHcCCCC
Q psy11349 244 KASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYITRTNHN 322 (360)
Q Consensus 244 ~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~~~g~~ 322 (360)
.++..++++.+.++|++.|+||+++.+.+...+++.. + ++.++++.++++.. ++||||+|+|+|+++|++ |++
T Consensus 150 ~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~-g~~ 223 (242)
T cd01169 150 EEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYD-G----GGFFEFESPRIDTKNTHGTGCTLSSAIAANLAK-GLS 223 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEE-C----CcEEEEecceeCCCCCCChHHHHHHHHHHHHHC-CCC
Confidence 6778888999999999999999765542221222222 2 45677888888766 999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11349 323 VKESLERTIATIQSVLER 340 (360)
Q Consensus 323 l~~A~~~A~a~~~~~l~~ 340 (360)
+++|+++|++++++++++
T Consensus 224 ~~~A~~~A~~~~~~~i~~ 241 (242)
T cd01169 224 LEEAVREAKEYVTQAIRN 241 (242)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999999875
No 18
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.96 E-value=8.7e-29 Score=249.24 Aligned_cols=244 Identities=17% Similarity=0.185 Sum_probs=189.1
Q ss_pred ccceeeecccccc-cccccCCchhhhhcCeeeeeeeee-eecCCCCCCcc--ccccCCHHHHHHHHHHhhhCCCCccCEE
Q psy11349 88 ERTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTV-QFSNHSGYGHL--KGKVITEQDFDELIEGLKMNDLMDYTHV 163 (360)
Q Consensus 88 ~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~-~~s~~~~~~~~--~g~~l~~~~l~~ll~~~~~~~~~~~d~i 163 (360)
.+.||+|+|+|++ ++...+.+..+.++|+....+.|. +.|++.++..+ ....+..+|++.++++++ +++|
T Consensus 9 ~~~vL~IaGsD~~gGAGi~aDl~t~~a~G~~~~~v~Talt~q~t~~v~~~~~~~~~~~~~ql~~~~~d~~------~~ai 82 (502)
T PLN02898 9 VPHVLTVAGSDSGAGAGIQADIKACAARGVYCTTAITAVTAQNTVGVQGVHAVPLDFVAEQLKSVLSDMP------VDVV 82 (502)
T ss_pred CCeEEEEeeeCCCcHHHHHHHHHHHHHcCCEecceeeEEEEEcCCccceeeeCCHHHHHHHHHHHHhCCC------CCEE
Confidence 5789999999999 444444455677888887776655 55666665542 233334588999988775 8999
Q ss_pred EEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCC-C
Q psy11349 164 LTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIP-I 241 (360)
Q Consensus 164 ~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~-~ 241 (360)
++|++++.+..+.+.+++++. +. .++|+|||+.++ |..|..++.++.+++++++++|++|||..|++.|+|.. .
T Consensus 83 k~G~l~~~~~i~~i~~~l~~~---~~-~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g~~~~ 158 (502)
T PLN02898 83 KTGMLPSAEIVKVLCQALKEF---PV-KALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLGGDPL 158 (502)
T ss_pred EECCcCCHHHHHHHHHHHHhC---CC-CCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhCCCCC
Confidence 999999988777777666543 21 259999999765 77887778888887678999999999999999999853 4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccCCC-ceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHHcC
Q psy11349 242 KDKASLLKTINVLHDRGIKTVVISSSELGPE-KHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYITRT 319 (360)
Q Consensus 242 ~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~~~ 319 (360)
.+.+++.+++++|.+.|++.|+|||++.+.+ ...+++.. + ++.++++.++++.. ++||||+|+|+|+++|++
T Consensus 159 ~~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~-~----~~~~~~~~~~i~~~~t~GaGD~fsaaiaa~l~~- 232 (502)
T PLN02898 159 ETVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYD-G----TEFHELRSSRIKTRNTHGTGCTLASCIAAELAK- 232 (502)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEc-C----CeEEEEecceeCCCCCCchhhhHHHHHHHHHHc-
Confidence 5677889999999999999999998876432 11222222 2 45567788888876 899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy11349 320 NHNVKESLERTIATIQSVLERTAQSFPN 347 (360)
Q Consensus 320 g~~l~~A~~~A~a~~~~~l~~t~~~~~~ 347 (360)
|+++++|+++|..+++.+++++.+.+.+
T Consensus 233 G~~l~eAv~~A~~~v~~ai~~~~~~~~~ 260 (502)
T PLN02898 233 GSDMLSAVKVAKRYVETALEYSKDIGIG 260 (502)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 9999999999999999999999655444
No 19
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.96 E-value=7.5e-29 Score=249.84 Aligned_cols=239 Identities=21% Similarity=0.269 Sum_probs=180.9
Q ss_pred ccceeeecccccc-cccccCCchhhhhcCeee-eeeeeeeecCCCCCCcc--ccccCCHHHHHHHHHHhhhCCCCccCEE
Q psy11349 88 ERTIATIQSVLER-TAQSFPNKGQYEVLGFEV-DAINTVQFSNHSGYGHL--KGKVITEQDFDELIEGLKMNDLMDYTHV 163 (360)
Q Consensus 88 ~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~-~~i~t~~~s~~~~~~~~--~g~~l~~~~l~~ll~~~~~~~~~~~d~i 163 (360)
++.||+|+|+|++ ++..-+.+..++++|+.. ..++++++||++++..+ ...+.-.+|++.++++.+ +++|
T Consensus 230 ~~~vLtIag~D~sggaGi~aDi~t~~~lg~~~~~~vta~t~qn~~~~~~~~~~~~~~~~~ql~~l~~d~~------~~~I 303 (504)
T PTZ00347 230 IPTVLTVSGSDSGGGAGHQADLKTLEALGVYSTSALTSLTAQNTKGVQQIQVVNEDFFAAQIDSVMSDFN------ISVV 303 (504)
T ss_pred CCeEEEEeCcCCCChHHHHHHHHHHHHcCCcccchheeEEeEcCcceeeEEeCCHHHHHHHHHHHHhCCC------CCEE
Confidence 4789999999999 444433444566778877 57888899999987653 222233455666666654 8899
Q ss_pred EEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCc----CcHHHHHHhhcccceEEeCCHHHHHhccC
Q psy11349 164 LTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPE----EVLPIYANELLSVADVICPNQFEAELLTK 238 (360)
Q Consensus 164 ~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~----~~~~~~~~~ll~~~diitpN~~E~~~L~g 238 (360)
++|++++.+..+.+.++++ + +++|+|||++++ |..+... +.++.+++++++.+|+||||..|++.|+|
T Consensus 304 k~G~l~s~e~i~~i~~~l~-----~--~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g 376 (504)
T PTZ00347 304 KLGLVPTARQLEIVIEKLK-----N--LPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILG 376 (504)
T ss_pred EECCcCCHHHHHHHHHHhc-----C--CCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhC
Confidence 9999999888777776663 2 679999999864 5544432 23445555788999999999999999999
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCCEEEEeccccC--CCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHH
Q psy11349 239 IP-IKDKASLLKTINVLHDRGIKTVVISSSELG--PEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLA 314 (360)
Q Consensus 239 ~~-~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g--~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a 314 (360)
.+ +.+.+++.++++.|.+.|++.|+|||++.+ .+.+...+...+ +++.++++.++++.. ++||||+|+|+|++
T Consensus 377 ~~~~~~~~~~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~---~~~~~~~~~~~i~~~~~~GaGD~fsaaiaa 453 (504)
T PTZ00347 377 RKEITGVYEARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDRE---KDRFYEFTANRIATINTHGTGCTLASAISS 453 (504)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCC---CCeEEEEEeeeECCCCCCChHHHHHHHHHH
Confidence 74 567788889999999999999999977643 122222222211 034567788888766 89999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11349 315 YITRTNHNVKESLERTIATIQSVLERTAQ 343 (360)
Q Consensus 315 ~L~~~g~~l~~A~~~A~a~~~~~l~~t~~ 343 (360)
+|++ |+++++|+++|.++++.+|+++.+
T Consensus 454 ~la~-G~~l~eAv~~A~~~v~~~i~~~~~ 481 (504)
T PTZ00347 454 FLAR-GYTVPDAVERAIGYVHEAIVRSCG 481 (504)
T ss_pred HHhC-CCCHHHHHHHHHHHHHHHHHhcCc
Confidence 9999 999999999999999999999975
No 20
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.96 E-value=9.3e-29 Score=250.17 Aligned_cols=248 Identities=17% Similarity=0.172 Sum_probs=190.0
Q ss_pred ccccceeeecccccc-cccccCCchhhhhcCeeeeeeeee-eecCCCCCCcc--ccccCCHHHHHHHHHHhhhCCCCccC
Q psy11349 86 SLERTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTV-QFSNHSGYGHL--KGKVITEQDFDELIEGLKMNDLMDYT 161 (360)
Q Consensus 86 ~~~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~-~~s~~~~~~~~--~g~~l~~~~l~~ll~~~~~~~~~~~d 161 (360)
.++++||+|+|++++ ++..-+.+..++.+|+....++|. +.|++.++... ....+..+|++.++++++ ++
T Consensus 27 ~~~~~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~~v~Talt~q~t~~v~~v~~~~~~~i~~ql~~l~~d~~------~~ 100 (530)
T PRK14713 27 AATPRVLSIAGTDPSGGAGIQADLKSIAAAGGYGMAVITALVAQNTRGVRAVHVPPADFLRAQLDAVSDDVT------VD 100 (530)
T ss_pred CCCCeEEEEeCcCCCcHHHHHHHHHHHHHcCCeecchhheEeeecCcceeeeccCCHHHHHHHHHHHHhCCC------CC
Confidence 446889999999999 444333444666778777665555 56666565432 222344677888888775 89
Q ss_pred EEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCC
Q psy11349 162 HVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIP 240 (360)
Q Consensus 162 ~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~ 240 (360)
+|++|++++.++.+.+.++++..+ . .++|+|||++.+ |..+..++..+.++ ++++++|+||||..|++.|+|.+
T Consensus 101 aikiG~l~s~~~i~~v~~~l~~~~--~--~~vVlDPv~~~~~G~~l~~~~~~~~~~-~Ll~~advItPN~~Ea~~Ltg~~ 175 (530)
T PRK14713 101 AVKIGMLGDAEVIDAVRTWLAEHR--P--PVVVLDPVMVATSGDRLLEEDAEAALR-ELVPRADLITPNLPELAVLLGEP 175 (530)
T ss_pred EEEECCcCCHHHHHHHHHHHHhCC--C--CCEEECCcccCCCCCCCCCHHHHHHHH-HHhhhhheecCChHHHHHHhCCC
Confidence 999999999999999999887653 2 369999999754 76666677778875 69999999999999999999976
Q ss_pred C-CCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHHc
Q psy11349 241 I-KDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYITR 318 (360)
Q Consensus 241 ~-~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~~ 318 (360)
+ .+.+++.+++++|.+.+...|+|||++.+.++....+...+ ++.++++.++++.. ++||||+|+|+|+++|++
T Consensus 176 ~~~~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~----~~~~~~~~~~v~~~~t~GaGD~fsaalaa~La~ 251 (530)
T PRK14713 176 PATTWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPD----GAVTEVPGPRVDTRNTHGTGCSLSSALATRLGR 251 (530)
T ss_pred CCCCHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCC----CeEEEEeeeeeCCCCCCcHHHHHHHHHHHHHHC
Confidence 5 46788888999998766679999988765554333332222 44667888888876 899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH--HhhCCCCC
Q psy11349 319 TNHNVKESLERTIATIQSVLERT--AQSFPNKG 349 (360)
Q Consensus 319 ~g~~l~~A~~~A~a~~~~~l~~t--~~~~~~~~ 349 (360)
|.++++|+++|.++++.+++.+ .+.|++.+
T Consensus 252 -G~~l~eAv~~A~~~v~~~i~~a~~~~~g~g~~ 283 (530)
T PRK14713 252 -GGDWAAALRWATAWLHGAIAAGAALQVGTGNG 283 (530)
T ss_pred -CCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 9999999999999999999988 44455433
No 21
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.96 E-value=3.6e-28 Score=241.17 Aligned_cols=243 Identities=20% Similarity=0.216 Sum_probs=187.5
Q ss_pred ccceeeecccccc-cccccCCchhhhhcCeeeeeeeee-eecCCCCCCc--cccccCCHHHHHHHHHHhhhCCCCccCEE
Q psy11349 88 ERTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTV-QFSNHSGYGH--LKGKVITEQDFDELIEGLKMNDLMDYTHV 163 (360)
Q Consensus 88 ~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~-~~s~~~~~~~--~~g~~l~~~~l~~ll~~~~~~~~~~~d~i 163 (360)
.+.||+|+|+|++ ++...+.++.++.+|++...+.|. +.||+.+... ..++.+..+|++.++++++ .+++
T Consensus 2 ~~~vltiaG~D~~ggaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~~~i~~~~~~~~~~q~~a~~~d~~------~~~i 75 (448)
T PRK08573 2 IPVALTIAGSDSGGGAGIEADLKTFAALGVHGAVAITSVTAQNTYEVRAIHDLPPEVVAAQIEAVWEDMG------IDAA 75 (448)
T ss_pred CCEEEEEeeeCCCCHHHHHHHHHHHHHcCCeecccceEEEeecCCCceEEEECCHHHHHHHHHHHHhcCC------CCEE
Confidence 4689999999999 444444445566777777655544 6777665433 2456666788999988886 7899
Q ss_pred EEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCC
Q psy11349 164 LTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIK 242 (360)
Q Consensus 164 ~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~ 242 (360)
++|++++.+....+. +.+++.+ ++++|||+++++ |..+..++..+.+.+++++++|+++||..|++.|+|.++.
T Consensus 76 k~G~l~~~e~~~~i~---~~~k~~g--~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~ 150 (448)
T PRK08573 76 KTGMLSNREIIEAVA---KTVSKYG--FPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIR 150 (448)
T ss_pred EECCcCCHHHHHHHH---HHHHHcC--CCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCC
Confidence 999998766555444 4455555 789999999864 6655555666666567889999999999999999998887
Q ss_pred CHHHHHHHHHHHHh-cCCCEEEEecccc-CCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHHcC
Q psy11349 243 DKASLLKTINVLHD-RGIKTVVISSSEL-GPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYITRT 319 (360)
Q Consensus 243 ~~~d~~~aa~~l~~-~g~~~Vlvtg~~~-g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~~~ 319 (360)
+.+++.+++++|.+ .|++.|+||+++. |.++...++ . + ++.++++.++++.. ++||||+|+|+|+++|++
T Consensus 151 ~~~d~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~-~-~----~~~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~- 223 (448)
T PRK08573 151 SVEDARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLY-H-N----GTFREFRAPRVESGCTHGTGCSFSAAIAAGLAK- 223 (448)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEecccCCCCceeEEEE-E-C----CeEEEEEecCcCCCCCCChHHHHHHHHHHHHHc-
Confidence 88899999999985 7999999997764 344532322 2 3 55667788888866 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy11349 320 NHNVKESLERTIATIQSVLERTAQSFPNK 348 (360)
Q Consensus 320 g~~l~~A~~~A~a~~~~~l~~t~~~~~~~ 348 (360)
|+++++|+++|+.++..+++++...|.+.
T Consensus 224 G~~l~eAl~~A~~~~~~al~~~~~~g~g~ 252 (448)
T PRK08573 224 GLDPEEAIKTAKKFITMAIKYGVKIGKGH 252 (448)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999987766654
No 22
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.96 E-value=4.5e-28 Score=253.72 Aligned_cols=242 Identities=15% Similarity=0.161 Sum_probs=185.0
Q ss_pred cccceeeecccccc-------cccccCCchhhhhcCeeeeeeeeeeecCCCCCCcc--ccccCCHHHHHHHHHHhhhCCC
Q psy11349 87 LERTIATIQSVLER-------TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHL--KGKVITEQDFDELIEGLKMNDL 157 (360)
Q Consensus 87 ~~~~vl~I~~~~~~-------~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~--~g~~l~~~~l~~ll~~~~~~~~ 157 (360)
..+.||+|.|+|++ |..+|. +|..+|+ ..+++.+.||+.++... ...++..+|++.++++++
T Consensus 240 ~~~~vLtIaGsD~sggAGi~aDlkt~~---alg~~~~--~viTaltaQn~~~v~~v~~~~~~~v~~Ql~~~~~d~~---- 310 (755)
T PRK09517 240 SAPRVLSIAGTDPTGGAGIQADLKSIA---AGGGYGM--CVVTALVAQNTHGVNTIHTPPLTFLEEQLEAVFSDVT---- 310 (755)
T ss_pred CCCeEEEEeccCCCcHHHHHHHHHHHH---HcCCccc--chheeEeeEcccceeEEeeCCHHHHHHHHHHHHcCCC----
Confidence 35789999999998 445555 5555555 44556678888876542 334555788999998886
Q ss_pred CccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhc
Q psy11349 158 MDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAELL 236 (360)
Q Consensus 158 ~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L 236 (360)
+++|++||+.+.+..+.+.+++++. .+ .++|+|||+..+ |..+..++..+.++ ++++.+|+||||..|++.|
T Consensus 311 --~~aiKiGmL~s~e~v~~i~~~l~~~--~~--~~vVlDPV~~~~sG~~l~~~~~~~~l~-~Llp~adlItPN~~Ea~~L 383 (755)
T PRK09517 311 --VDAVKLGMLGSADTVDLVASWLGSH--EH--GPVVLDPVMVATSGDRLLDADATEALR-RLAVHVDVVTPNIPELAVL 383 (755)
T ss_pred --CCEEEECCCCCHHHHHHHHHHHHhC--CC--CCEEEecccccCCCCCCCCHHHHHHHH-HHhCcccCccCCHHHHHHH
Confidence 8999999999988888887777653 12 579999999865 76676667777775 6899999999999999999
Q ss_pred cCCC-CCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHH
Q psy11349 237 TKIP-IKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLA 314 (360)
Q Consensus 237 ~g~~-~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a 314 (360)
+|.. ..+.+++.+++++|.+.+...|+|||+|...+.....+...+ +..++++.++++.. ++||||+|+|+|++
T Consensus 384 ~g~~~~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~----~~~~~~~~~~v~~~~t~GaGDtfsaaiaa 459 (755)
T PRK09517 384 CGEAPAITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPD----GSVHQVENPRVNTTNSHGTGCSLSAALAT 459 (755)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCC----CeEEEEeecccCCCCCcChHHHHHHHHHH
Confidence 9953 456788889999998865568999988753221111221212 44667888888876 89999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHH--HhhCCCCC
Q psy11349 315 YITRTNHNVKESLERTIATIQSVLERT--AQSFPNKG 349 (360)
Q Consensus 315 ~L~~~g~~l~~A~~~A~a~~~~~l~~t--~~~~~~~~ 349 (360)
+|++ |+++++|++.|+.+++.+++++ .+.|++.|
T Consensus 460 ~La~-G~sl~eAv~~A~~~v~~~i~~a~~~~~g~g~~ 495 (755)
T PRK09517 460 LIAA-GESVEKALEWATRWLNEALRHADHLAVGSGNG 495 (755)
T ss_pred HHHC-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 9999 9999999999999999999998 44555443
No 23
>KOG2598|consensus
Probab=99.96 E-value=6.5e-28 Score=226.11 Aligned_cols=248 Identities=19% Similarity=0.257 Sum_probs=203.2
Q ss_pred ccceeeecccccc-------cccccCCchhhhhcCeeeeeeeeeeecCCCCCCcc--ccccCCHHHHHHHHHHhhhCCCC
Q psy11349 88 ERTIATIQSVLER-------TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHL--KGKVITEQDFDELIEGLKMNDLM 158 (360)
Q Consensus 88 ~~~vl~I~~~~~~-------~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~--~g~~l~~~~l~~ll~~~~~~~~~ 158 (360)
-+++|+|+|+|.+ +.+++. +.+.+|. ..+++.+.||+-|+... ..+.+..+|+++.+.+++
T Consensus 23 lPt~LTIAGSDcSGGAGIqADlKv~T---Ah~vYgM--S~iTaltaQn~~gV~sv~~lpp~~V~qqidacL~Di~----- 92 (523)
T KOG2598|consen 23 LPTVLTIAGSDCSGGAGIQADLKVMT---AHGVYGM--SVITALTAQNTVGVYSVHLLPPSFVSQQIDACLSDIK----- 92 (523)
T ss_pred CCeeEEEecCCCCCcccchhhhhhhh---hhccchh--hhhhhhhccCCccceeeccCCHHHHHHHHHHHhhcCc-----
Confidence 5789999999998 445666 6667777 56667777887775442 344555788999999986
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhcc
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELLSVADVICPNQFEAELLT 237 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~ 237 (360)
++++++||+++++.+..+.+.+++.+. ..+|+|||+..+ |..+..++.+..+.++++|.+|++|||..|+-.|.
T Consensus 93 -C~VvKTGML~~~~I~~vi~q~l~~~~~----~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll 167 (523)
T KOG2598|consen 93 -CDVVKTGMLPSPEIVKVIEQSLQKFNI----PKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILL 167 (523)
T ss_pred -ccEEeecCcCchHHHHHHHHHHHhhcC----cceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHH
Confidence 999999999999988888888887542 469999999986 88888899999999999999999999999999999
Q ss_pred CC------CCCCHHHHHHHHHHHHhcCCCEEEEeccccCCC----------c--eEEEEEeeeccCCceEEEEEecccCC
Q psy11349 238 KI------PIKDKASLLKTINVLHDRGIKTVVISSSELGPE----------K--HLLGVASTVVGGSKTTVSINIPQFDA 299 (360)
Q Consensus 238 g~------~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~----------g--~~~~~~~~~~~~~~~~~~~~~~~v~~ 299 (360)
+. ++.+..|+++.+..+++.|+++|+|+|+|..-+ . ..+.++. . .+.+.++.+.+..
T Consensus 168 ~~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~Dvlyd-G----~~F~~f~~~~~~t 242 (523)
T KOG2598|consen 168 KKEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYD-G----KEFYIFKSPYLAT 242 (523)
T ss_pred hhcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEe-c----ceEEEeccccccc
Confidence 83 456788999999999999999999999985422 2 3444432 2 5777888888877
Q ss_pred c-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcCCCCCcC
Q psy11349 300 S-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKGSSKASVPAFV 359 (360)
Q Consensus 300 ~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~t~~~~~~~~~~~~~~~~~~ 359 (360)
. ++|+||++++++++.|+. |.++.+|++.|..|++.+|+++...+.+.+. +++|+-
T Consensus 243 ~~tHGtgCtLaSAIASnLA~-g~sl~qAv~~ai~yvq~Ai~~s~~i~~~s~~---plnh~~ 299 (523)
T KOG2598|consen 243 KHTHGTGCTLASAIASNLAR-GYSLLQAVQGAIEYVQNAIAISCDITKGSVK---PLNHVY 299 (523)
T ss_pred ccccCccchHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhcCCcccCcCC---cccchh
Confidence 7 999999999999999999 9999999999999999999998876665443 677764
No 24
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.95 E-value=3e-26 Score=211.44 Aligned_cols=237 Identities=19% Similarity=0.221 Sum_probs=165.8
Q ss_pred ccceeeecccccc-------cccccCCchhhhhcCeeeeeeeeeeecCCCCCCccccccCCHHHHHHHHHHhhhCCCCcc
Q psy11349 88 ERTIATIQSVLER-------TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDLMDY 160 (360)
Q Consensus 88 ~~~vl~I~~~~~~-------~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~~g~~l~~~~l~~ll~~~~~~~~~~~ 160 (360)
.+.||+|.|+|++ +..+|. ++..+|. ..+++.+.++..+. .+ .....+++.+.++.+.. .++
T Consensus 3 ~~~vl~iag~d~~ggaG~~aD~~~~~---~~~~~~~--~~~t~~t~~~~~G~-~v--~~~~~~~l~~~l~~l~~---~~~ 71 (253)
T PRK12413 3 TNYILAISGNDIFSGGGLHADLATYT---RNGLHGF--VAVTCLTAMTEKGF-EV--FPVDKEIFQQQLDSLKD---VPF 71 (253)
T ss_pred CCeEEEEeeeCCCCHHHHHHHHHHHH---HcCCccC--eeeEEEecccCCce-EE--EECCHHHHHHHHHHhhC---CCC
Confidence 4679999999998 444555 4444444 23333445565553 22 12233444444443321 146
Q ss_pred CEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCC-CCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCC
Q psy11349 161 THVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGR-MYVPEEVLPIYANELLSVADVICPNQFEAELLTKI 239 (360)
Q Consensus 161 d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~-~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~ 239 (360)
.++++|++++.+..+.+.+++++ + +++++++||+++++.+ ....++..+.++ ++++++|+++||+.|++.|+|.
T Consensus 72 ~~i~~G~l~~~~~~~~~~~~~~~--~--~~~~vv~DPv~~~~~~~~~~~~~~~~~l~-~ll~~~dli~pN~~E~~~L~g~ 146 (253)
T PRK12413 72 SAIKIGLLPNVEIAEQALDFIKG--H--PGIPVVLDPVLVCKETHDVEVSELRQELI-QFFPYVTVITPNLVEAELLSGK 146 (253)
T ss_pred CEEEECCcCCHHHHHHHHHHHHh--C--CCCCEEEcCceecCCCCccccHHHHHHHH-HHhccCcEECCCHHHHHHHhCc
Confidence 78889999877766766666653 2 3478999999998632 122344455553 6789999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccCCC-ceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHH
Q psy11349 240 PIKDKASLLKTINVLHDRGIKTVVISSSELGPE-KHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYIT 317 (360)
Q Consensus 240 ~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~ 317 (360)
+..+.+++.++++++++.|++.|+||+++.+.. +..+++.. + ++.+ ...++.... ++||||+|+|+|+++|+
T Consensus 147 ~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~-~----~~~~-~~~~~~~~~~~~GaGDaf~a~~~~~l~ 220 (253)
T PRK12413 147 EIKTLEDMKEAAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYD-G----KEFV-ILESPVLEKNNIGAGCTFASSIASQLV 220 (253)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcceEEEEc-C----CEEE-EEeecccCCCCCChHHHHHHHHHHHHH
Confidence 887888899999999999999999996554321 22323322 2 3333 344444444 99999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy11349 318 RTNHNVKESLERTIATIQSVLERTAQSFPN 347 (360)
Q Consensus 318 ~~g~~l~~A~~~A~a~~~~~l~~t~~~~~~ 347 (360)
+ |+++++|+++|.++++.+|+++.+.|.+
T Consensus 221 ~-g~~l~ea~~~A~~~~~~~l~~~~~~g~~ 249 (253)
T PRK12413 221 K-GKSPLEAVKNSKDFVYQAIQQSDQYGVV 249 (253)
T ss_pred c-CCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9 9999999999999999999999876664
No 25
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1e-21 Score=182.14 Aligned_cols=178 Identities=24% Similarity=0.293 Sum_probs=151.2
Q ss_pred cccccCCHHHHHHHHHHhhhCCCCccC-EEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHH
Q psy11349 135 LKGKVITEQDFDELIEGLKMNDLMDYT-HVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLP 213 (360)
Q Consensus 135 ~~g~~l~~~~l~~ll~~~~~~~~~~~d-~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~ 213 (360)
..|+.+++++++.+++.++... ...| +++.|++++.-..+.+.++++.+++.+ +++++|.. |. .+
T Consensus 106 ~~Gp~is~~~~~~~l~~~~~~l-~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g--~~vilD~S----g~------~L- 171 (310)
T COG1105 106 FPGPEISEAELEQFLEQLKALL-ESDDIVVLSGSLPPGVPPDAYAELIRILRQQG--AKVILDTS----GE------AL- 171 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-ccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcC--CeEEEECC----hH------HH-
Confidence 4788899999999999988521 3566 668899998888899999999999987 89999972 21 12
Q ss_pred HHHHhhcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEE
Q psy11349 214 IYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSIN 293 (360)
Q Consensus 214 ~~~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~ 293 (360)
.+.+-..+++|+||..|++.|+|.+..+.+|..+++++|..+|+++|+|+ +|++|+++.. + ++.++..
T Consensus 172 --~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVS---lG~~Gal~~~---~----~~~~~a~ 239 (310)
T COG1105 172 --LAALEAKPWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIVS---LGADGALLVT---A----EGVYFAS 239 (310)
T ss_pred --HHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEE---ecCcccEEEc---c----CCeEEEe
Confidence 12222469999999999999999999988999999999999999999999 9999998765 3 6788888
Q ss_pred ecccCCc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy11349 294 IPQFDAS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLE 339 (360)
Q Consensus 294 ~~~v~~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~ 339 (360)
.|+++.. |+||||++.|+|++++++ ++++++++++|.++......
T Consensus 240 ~p~~~vvstVGAGDs~VAGf~~~~~~-~~~~e~~l~~avA~g~a~~~ 285 (310)
T COG1105 240 PPKVQVVSTVGAGDSMVAGFLAGLLK-GKSLEEALRFAVACGAAAAS 285 (310)
T ss_pred CCCcceecCcCchHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhh
Confidence 8888887 999999999999999999 99999999999999766654
No 26
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.87 E-value=6.1e-21 Score=176.16 Aligned_cols=228 Identities=15% Similarity=0.111 Sum_probs=155.4
Q ss_pred ccccccccceeeecccccc-cccccCCchhhhhcCeeeeeeeeeeecCCCC-CCcccc----ccCCHHHHHHHHHHhhhC
Q psy11349 82 NVKESLERTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTVQFSNHSG-YGHLKG----KVITEQDFDELIEGLKMN 155 (360)
Q Consensus 82 ~~~~~~~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~-~~~~~g----~~l~~~~l~~ll~~~~~~ 155 (360)
+.||+..++|++|+|++++ +++.++++++++ .|..++.+.++. +... .....+ ..+..+..+.+.+.+.
T Consensus 2 ~~hK~~~g~vl~i~Gs~~~~GA~~la~~~a~~-~G~g~vt~~~~~--~~~~~~~~~~pe~i~~~~~~~~~~~~~~~~~-- 76 (254)
T cd01171 2 DSHKGSRGRVLVIGGSRGYTGAAYLAALAALR-AGAGLVTVATPP--EAAAVIKSYSPELMVHPLLETDIEELLELLE-- 76 (254)
T ss_pred CCCCcCCCeEEEEeCCCCCccHHHHHHHHHHH-HccCEEEEEECH--hhHHHHHhcCceeeEecccccchHHHHhhhc--
Confidence 5789999999999999998 888888888885 688777766653 2111 111111 1111111233333333
Q ss_pred CCCccCEEEEee-eCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHH
Q psy11349 156 DLMDYTHVLTGY-CRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAE 234 (360)
Q Consensus 156 ~~~~~d~i~~G~-l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~ 234 (360)
++|++++|+ +++.+ .+.++++.+++.+ .++|+||.... +.... .+ ..+.+.++++|||..|++
T Consensus 77 ---~~d~v~ig~gl~~~~---~~~~i~~~~~~~~--~pvVlDa~~~~----~~~~~-~~---~~~~~~~~iltPn~~E~~ 140 (254)
T cd01171 77 ---RADAVVIGPGLGRDE---EAAEILEKALAKD--KPLVLDADALN----LLADE-PS---LIKRYGPVVLTPHPGEFA 140 (254)
T ss_pred ---cCCEEEEecCCCCCH---HHHHHHHHHHhcC--CCEEEEcHHHH----HhhcC-hh---hhccCCCEEECCCHHHHH
Confidence 588999999 55543 3445555555544 78999984211 11111 00 023568999999999999
Q ss_pred hccCCCCCC-HHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHH
Q psy11349 235 LLTKIPIKD-KASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALM 312 (360)
Q Consensus 235 ~L~g~~~~~-~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~ 312 (360)
+|+|.+..+ .++..++++++.+++...|++||. +.+++. + ++.++++..+.+.+ ++|+||+|+|++
T Consensus 141 ~L~g~~~~~~~~~~~~~a~~l~~~~~~~vvlkG~-----~~~i~~---~----~~~~~~~~~~~~~~~~~GaGD~lag~i 208 (254)
T cd01171 141 RLLGALVEEIQADRLAAAREAAAKLGATVVLKGA-----VTVIAD---P----DGRVYVNPTGNPGLATGGSGDVLAGII 208 (254)
T ss_pred HHhCCChhhhhhHHHHHHHHHHHHcCcEEEEcCC-----CCEEEC---C----CCcEEEECCCCcccccCchHHHHHHHH
Confidence 999986544 346678899999887777777742 333322 2 34566777777777 899999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11349 313 LAYITRTNHNVKESLERTIATIQSVLERTAQ 343 (360)
Q Consensus 313 ~a~L~~~g~~l~~A~~~A~a~~~~~l~~t~~ 343 (360)
++++++ |+++.+|++.|+.+...+.+...+
T Consensus 209 aa~la~-g~~~~eA~~~A~~~~~~a~~~~~~ 238 (254)
T cd01171 209 AALLAQ-GLSPLEAAALAVYLHGLAGDLAAK 238 (254)
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999988777776554
No 27
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.82 E-value=1.2e-18 Score=163.67 Aligned_cols=169 Identities=24% Similarity=0.353 Sum_probs=130.4
Q ss_pred cCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHh
Q psy11349 139 VITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANE 218 (360)
Q Consensus 139 ~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ 218 (360)
.+++++++.+.+.++ +++++++.... ..+.+..+++.+++++ .++++||.... ... +.
T Consensus 114 ~~~~~~~~~~~~~~~-----~~~~v~~~~~~---~~~~~~~~~~~a~~~g--~~v~~D~~~~~--------~~~----~~ 171 (292)
T cd01174 114 ELTPADVDAALELIA-----AADVLLLQLEI---PLETVLAALRAARRAG--VTVILNPAPAR--------PLP----AE 171 (292)
T ss_pred CCCHHHHHHHHHhcc-----cCCEEEEeCCC---CHHHHHHHHHHHHhcC--CEEEEeCCCcC--------cCc----HH
Confidence 345566666555454 57777653211 2345667778888776 89999995321 111 36
Q ss_pred hcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccC
Q psy11349 219 LLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFD 298 (360)
Q Consensus 219 ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 298 (360)
+++++|+++||+.|++.|++....+.+++.++++.+.+.|++.|++| +|++|++++. + ++.++++.++++
T Consensus 172 ~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt---~G~~G~~~~~---~----~~~~~~~~~~~~ 241 (292)
T cd01174 172 LLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVT---LGAKGALLAS---G----GEVEHVPAFKVK 241 (292)
T ss_pred HHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEE---eCCCceEEEe---C----CceEEecCCCcc
Confidence 67899999999999999999876666778888999999999999999 8999987643 3 556677877777
Q ss_pred Cc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 299 AS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 299 ~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
.. |+||||+|+|+|++++++ |+++++|+++|++++...+++
T Consensus 242 ~vdt~GaGD~F~ag~l~~l~~-g~~~~~al~~a~~~Aa~~~~~ 283 (292)
T cd01174 242 AVDTTGAGDTFIGALAAALAR-GLSLEEAIRFANAAAALSVTR 283 (292)
T ss_pred cCCCCCcHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcC
Confidence 76 999999999999999999 999999999999998777764
No 28
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.82 E-value=5.5e-19 Score=164.79 Aligned_cols=227 Identities=14% Similarity=0.065 Sum_probs=147.3
Q ss_pred HHhhcccccccccccceeeecccccc-cccccCCchhhhhcCeeeeeeeeeeecCC-CCCCccccccCCHHHHHHHHHHh
Q psy11349 75 YITRTNHNVKESLERTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTVQFSNH-SGYGHLKGKVITEQDFDELIEGL 152 (360)
Q Consensus 75 ~~~~~~~~~~~~~~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~~~s~~-~~~~~~~g~~l~~~~l~~ll~~~ 152 (360)
.+.+++.+.||+..++|++|+|++++ ++..+..+++++. |.+.+.+.+++ +. +... ..++++...+++...+.+
T Consensus 11 ~~p~~~~~~~K~~~G~vliiaGs~~~~GA~ila~l~~~~~-g~~~v~~~~~~--~~~~~i~-~~~pe~~~~~~~~~~~~~ 86 (272)
T TIGR00196 11 TLPLRDPNSHKGQYGRVLIIGGSDDYSGAPLLAALAALRA-GAGLVTVAAPE--NVITLIN-SVSPELIVHRLGWKVDED 86 (272)
T ss_pred hCCCCCCCCCCCCCCeEEEEeCCCCCCcHHHHHHHHHHHh-CCCeEEEEEch--hhHHHHh-hcCCEEEEecchhhHHHH
Confidence 34677788999999999999999999 7887776666643 77666655543 21 1111 122222222222111121
Q ss_pred hhCCCCccCEEEEee-eCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHH
Q psy11349 153 KMNDLMDYTHVLTGY-CRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQF 231 (360)
Q Consensus 153 ~~~~~~~~d~i~~G~-l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~ 231 (360)
... +..+|++++|+ +++.+. +.++++.+++.+ .++|+||. |..+ .+.. ....+.+++||||..
T Consensus 87 ~~~-~~~~davvig~Gl~~~~~---~~~l~~~~~~~~--~pvVlDa~----g~~l-----~~~~-~~~~~~~~vItPN~~ 150 (272)
T TIGR00196 87 EEL-LERYDVVVIGPGLGQDPS---FKKAVEEVLELD--KPVVLDAD----ALNL-----LTYD-KPKREGEVILTPHPG 150 (272)
T ss_pred Hhh-hccCCEEEEcCCCCCCHH---HHHHHHHHHhcC--CCEEEEhH----HHHH-----Hhhc-ccccCCCEEECCCHH
Confidence 110 02578898888 555443 556666666655 78999983 1111 1100 001346899999999
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHH
Q psy11349 232 EAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAA 310 (360)
Q Consensus 232 E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a 310 (360)
|++.|+|.+..+.+++.+++++|+++....|++| |.++.+. ..+ +..+ ....+.+.. ++|+||+|+|
T Consensus 151 El~~L~g~~~~~~~~~~~aa~~l~~~~~~vVv~k----G~~~~i~---~~~----~~~~-~~~~~~~~~~~~GaGD~lag 218 (272)
T TIGR00196 151 EFKRLLGLVNEIQGDRLEAAQDIAQKLQAVVVLK----GAADVIA---APD----GDLW-INKTGNAALAKGGTGDVLAG 218 (272)
T ss_pred HHHHHhCCchhhhhhHHHHHHHHHHHhCCEEEEc----CCCCEEE---cCC----CeEE-EECCCCCccCCCCchHHHHH
Confidence 9999999876667788999999988765555555 4445432 112 3333 445555666 8899999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Q psy11349 311 LMLAYITRTNHNVKESLERTIATI 334 (360)
Q Consensus 311 ~~~a~L~~~g~~l~~A~~~A~a~~ 334 (360)
.+++++++ |.++.+|+..|..+-
T Consensus 219 ~iaa~la~-g~~~~~A~~~a~~~~ 241 (272)
T TIGR00196 219 LIGGLLAQ-NLDPFDAACNAAFAH 241 (272)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHH
Confidence 99999999 999999997775543
No 29
>PRK11142 ribokinase; Provisional
Probab=99.82 E-value=1.1e-18 Score=165.19 Aligned_cols=169 Identities=24% Similarity=0.303 Sum_probs=129.4
Q ss_pred cCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHh
Q psy11349 139 VITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANE 218 (360)
Q Consensus 139 ~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ 218 (360)
.+++++++.+.+.+. +.+++++.... ..+.+.++++.+++.+ +++++||.... ... ..
T Consensus 117 ~~~~~~~~~~~~~l~-----~~~~v~~~~~~---~~~~~~~~~~~a~~~g--~~v~~d~~~~~--------~~~----~~ 174 (306)
T PRK11142 117 ALTPALVEAHRELIA-----NADALLMQLET---PLETVLAAAKIAKQHG--TKVILNPAPAR--------ELP----DE 174 (306)
T ss_pred cCCHHHHHHHHhhhc-----cCCEEEEeCCC---CHHHHHHHHHHHHHcC--CEEEEECCCCc--------ccC----HH
Confidence 456666665545454 57777643221 2345667777788766 89999984321 111 35
Q ss_pred hcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccC
Q psy11349 219 LLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFD 298 (360)
Q Consensus 219 ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 298 (360)
+++++|+++||+.|++.++|.+..+.++..++++.+.+.|++.|++| +|++|+++.. + ++.++.+.++++
T Consensus 175 ~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt---~G~~G~~~~~---~----~~~~~~~~~~v~ 244 (306)
T PRK11142 175 LLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLIT---LGSRGVWLSE---N----GEGQRVPGFRVQ 244 (306)
T ss_pred HHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHHhCCCeEEEE---ECCCcEEEEe---C----CcceeccCCCcc
Confidence 67899999999999999999876666778888888888899999999 9999987543 3 556778887777
Q ss_pred Cc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 299 AS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 299 ~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
.. |+||||+|+|+|++++++ |+++++|+++|++++...+++
T Consensus 245 vvDt~GAGDaF~Agfi~~l~~-g~~~~~al~~a~~~Aa~~~~~ 286 (306)
T PRK11142 245 AVDTIAAGDTFNGALVTALLE-GKPLPEAIRFAHAAAAIAVTR 286 (306)
T ss_pred cccCCCchhHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCC
Confidence 76 999999999999999999 999999999999987666643
No 30
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.81 E-value=2.5e-18 Score=162.45 Aligned_cols=177 Identities=22% Similarity=0.251 Sum_probs=132.2
Q ss_pred cccCCHHHHHHHHHHhhhCCCCccCEEE-EeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHH
Q psy11349 137 GKVITEQDFDELIEGLKMNDLMDYTHVL-TGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIY 215 (360)
Q Consensus 137 g~~l~~~~l~~ll~~~~~~~~~~~d~i~-~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~ 215 (360)
+..+++++++.+++.++.. +..+++++ .|+.......+.+.++++.+++.+ .++++||... . +
T Consensus 106 ~~~~~~~~~~~~~~~~~~~-l~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~--~~v~~D~~~~---------~----~ 169 (304)
T TIGR03828 106 GPEISEEELEALLEKLRAQ-LAEGDWLVLSGSLPPGVPPDFYAELIALAREKG--AKVILDTSGE---------A----L 169 (304)
T ss_pred CCCCCHHHHHHHHHHHHHh-ccCCCEEEEECCCCCCCCHHHHHHHHHHHHHcC--CEEEEECChH---------H----H
Confidence 3445666666655543311 12578664 476543333456677778787766 7899998421 1 1
Q ss_pred HHhhcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEec
Q psy11349 216 ANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIP 295 (360)
Q Consensus 216 ~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
.+.+...+|+++||+.|++.|+|.+..+.+++.++++.+.+.|.+.|++| +|++|++++. + ++.++.+.+
T Consensus 170 ~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT---~G~~G~~~~~---~----~~~~~~~~~ 239 (304)
T TIGR03828 170 RDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARELLDLGAENVLIS---LGADGALLVT---K----EGALFAQPP 239 (304)
T ss_pred HHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEc---cCCCCcEEEc---C----CceEEEeCC
Confidence 12233467999999999999999876677888889999999999999999 8999987643 3 456677777
Q ss_pred ccCCc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 296 QFDAS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 296 ~v~~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
+++.+ |+||||+|+|+|+++|.+ |+++++|+++|++++..++++
T Consensus 240 ~~~vvDttGAGDaF~a~~l~~l~~-g~~~~~a~~~a~~~Aa~~~~~ 284 (304)
T TIGR03828 240 KGEVVSTVGAGDSMVAGFLAGLES-GLSLEEALRLAVAAGSAAAFS 284 (304)
T ss_pred CccccCCcChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcC
Confidence 77776 999999999999999999 999999999999998777654
No 31
>PTZ00292 ribokinase; Provisional
Probab=99.81 E-value=1.4e-18 Score=166.05 Aligned_cols=175 Identities=23% Similarity=0.346 Sum_probs=130.8
Q ss_pred cCCHHHHHHHHHHhhhCCCCc-cCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHH
Q psy11349 139 VITEQDFDELIEGLKMNDLMD-YTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYAN 217 (360)
Q Consensus 139 ~l~~~~l~~ll~~~~~~~~~~-~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~ 217 (360)
.+++++++...+.+. + .+++++... ...+.+.++++.+++.+ +++++||....+ .+ . .+.+ +
T Consensus 131 ~~~~~~~~~~~~~i~-----~~~~~~~~~~~---~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~--~~-~---~~~~-~ 193 (326)
T PTZ00292 131 ALTPQMVDAQTDNIQ-----NICKYLICQNE---IPLETTLDALKEAKERG--CYTVFNPAPAPK--LA-E---VEII-K 193 (326)
T ss_pred cCCHHHHHHHHHHhh-----hhCCEEEECCC---CCHHHHHHHHHHHHHcC--CEEEEECCCCcc--cc-c---cccH-H
Confidence 556666766555554 4 566654321 12345566777777766 899999975432 11 1 1222 4
Q ss_pred hhcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEeccc
Q psy11349 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQF 297 (360)
Q Consensus 218 ~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v 297 (360)
++++++|+++||+.|++.++|.+..+.+++.++++.+.+.+++.|++| +|++|++++.. + +..++++.+++
T Consensus 194 ~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT---~G~~Ga~~~~~--~----~~~~~~~~~~~ 264 (326)
T PTZ00292 194 PFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVENVIIT---LGANGCLIVEK--E----NEPVHVPGKRV 264 (326)
T ss_pred HHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCeEEEE---eCCCcEEEEeC--C----CceEEccCCcc
Confidence 677899999999999999999876666777888888888899999999 99999876531 2 33477888787
Q ss_pred CCc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 298 DAS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 298 ~~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
+.+ |+||||+|.|+|+++|++ |+++++|+++|++++...+++
T Consensus 265 ~vvDttGAGDaF~ag~l~~l~~-g~~~~~al~~a~a~Aa~~v~~ 307 (326)
T PTZ00292 265 KAVDTTGAGDCFVGSMAYFMSR-GKDLKESCKRANRIAAISVTR 307 (326)
T ss_pred ccCCCcchHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCC
Confidence 777 999999999999999999 999999999999988666653
No 32
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.81 E-value=7.4e-18 Score=159.94 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=121.2
Q ss_pred ccCEEE-EeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhcc
Q psy11349 159 DYTHVL-TGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLT 237 (360)
Q Consensus 159 ~~d~i~-~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~ 237 (360)
++|+++ .|+++.....+.+.++++.+++.+ +++++||...+ .+.+. ..++++|+++||+.|++.++
T Consensus 126 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~----------~~~~~-~~~~~~dii~~n~~E~~~l~ 192 (309)
T PRK13508 126 SVEVVAISGSLPAGLPVDYYAQLIELANQAG--KPVVLDCSGAA----------LQAVL-ESPYKPTVIKPNIEELSQLL 192 (309)
T ss_pred CCCEEEEeCCCCCCcCHHHHHHHHHHHHHCC--CEEEEECCcHH----------HHHHH-hccCCceEEccCHHHHHHHh
Confidence 678664 466543222355667777788777 89999995221 11111 23468999999999999999
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHH
Q psy11349 238 KIPIK-DKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAY 315 (360)
Q Consensus 238 g~~~~-~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~ 315 (360)
|.+.. +.+++.++++.+...|++.|++| +|++|+++.. + ++.++.+.++++.+ |+||||+|.|+|+++
T Consensus 193 g~~~~~~~~~~~~~~~~~~~~g~~~vvvT---~G~~G~~~~~---~----~~~~~~~~~~v~vvDttGAGDaF~Agfi~~ 262 (309)
T PRK13508 193 GKEVSEDLDELKEVLQQPLFEGIEWIIVS---LGADGAFAKH---N----DTFYKVDIPKIEVVNPVGSGDSTVAGIASG 262 (309)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEe---cCCCceEEEe---C----CceEEEeCCCccccCCcChhHHHHHHHHHH
Confidence 97653 45677777888877899999999 9999987643 3 56677888888877 999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 316 ITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 316 L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
|++ |+++++|+++|+++++.++++
T Consensus 263 l~~-g~~~~~al~~a~a~aa~~~~~ 286 (309)
T PRK13508 263 LLH-QEDDADLLKKANVLGMLNAQE 286 (309)
T ss_pred HHc-CCCHHHHHHHHHHHHHHHhcC
Confidence 999 999999999999987766644
No 33
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.81 E-value=2.8e-18 Score=161.17 Aligned_cols=163 Identities=25% Similarity=0.255 Sum_probs=123.8
Q ss_pred ccCEEEE-eeeCC--HHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHh
Q psy11349 159 DYTHVLT-GYCRS--PQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAEL 235 (360)
Q Consensus 159 ~~d~i~~-G~l~~--~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~ 235 (360)
+.+++++ |+.+. +...+.+.++++.+++.+ +++++||+++.. .|..+...+.+ ..+++++|+++||+.|++.
T Consensus 124 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~D~~~~~~--~~~~~~~~~~~-~~~~~~~dil~~n~~E~~~ 198 (294)
T cd01166 124 GADHLHLSGITLALSESAREALLEALEAAKARG--VTVSFDLNYRPK--LWSAEEAREAL-EELLPYVDIVLPSEEEAEA 198 (294)
T ss_pred CCCEEEEcCcchhhCHHHHHHHHHHHHHHHHcC--CEEEECCCCcch--hcChHHHHHHH-HHHHHhCCEEEcCHHHHHH
Confidence 5776654 55532 322467778888888766 899999976432 11111222333 4778999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHH
Q psy11349 236 LTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLA 314 (360)
Q Consensus 236 L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a 314 (360)
|+|.+. .+++.+.++++ +.|++.|+|| +|++|+++.. + ++.++++.++++.+ |+||||+|+|+|++
T Consensus 199 l~~~~~--~~~~~~~~~~l-~~g~~~viit---~G~~G~~~~~---~----~~~~~~~~~~~~~vdt~GAGD~f~a~~~~ 265 (294)
T cd01166 199 LLGDED--PTDAAERALAL-ALGVKAVVVK---LGAEGALVYT---G----GGRVFVPAYPVEVVDTTGAGDAFAAGFLA 265 (294)
T ss_pred HhCCCC--chhHHHHHHhh-cCCccEEEEE---EcCCceEEEE---C----CceEEeCCCCcccccCCCchHHHHHHHHH
Confidence 998743 34666667777 7899999999 8889986543 2 56778888877766 99999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 315 YITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 315 ~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
+|++ |+++++|+++|+++++..+++
T Consensus 266 ~l~~-g~~~~~a~~~a~~~aa~~i~~ 290 (294)
T cd01166 266 GLLE-GWDLEEALRFANAAAALVVTR 290 (294)
T ss_pred HHHc-CCCHHHHHHHHHHHHHHHHhc
Confidence 9999 999999999999998877764
No 34
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.80 E-value=5.1e-18 Score=161.02 Aligned_cols=177 Identities=20% Similarity=0.268 Sum_probs=132.5
Q ss_pred cccCCHHHHHHHHHHhhhCCCCccCEE-EEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHH
Q psy11349 137 GKVITEQDFDELIEGLKMNDLMDYTHV-LTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIY 215 (360)
Q Consensus 137 g~~l~~~~l~~ll~~~~~~~~~~~d~i-~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~ 215 (360)
+..++.++++.+.+.+... .+.+.+ +.|+++...+.+.+.++++.+++.| +++++||.. +..+..
T Consensus 110 ~~~~~~~~~~~l~~~~~~~--~~~~~~~i~g~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~----------~~~~~~ 175 (309)
T PRK10294 110 GAALNEDEFRQLEEQVLEI--ESGAILVISGSLPPGVKLEKLTQLISAAQKQG--IRCIIDSSG----------DALSAA 175 (309)
T ss_pred CCCCCHHHHHHHHHHHHhc--CCCCEEEEeCCCCCCCCHHHHHHHHHHHHHcC--CeEEEeCCC----------HHHHHH
Confidence 3456666666654443221 246655 5577765444567778888888877 899999941 111111
Q ss_pred HHhhcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcC-CCEEEEeccccCCCceEEEEEeeeccCCceEEEEEe
Q psy11349 216 ANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRG-IKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINI 294 (360)
Q Consensus 216 ~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g-~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 294 (360)
..++++|+++||+.|++.|+|.+..+.+++.++++.+++.+ .+.|+|| +|.+|++++. + ++.++.+.
T Consensus 176 --~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~~~~~~~~vvvT---~G~~G~~~~~---~----~~~~~~~~ 243 (309)
T PRK10294 176 --LAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELVNSGKAKRVVVS---LGPQGALGVD---S----ENCIQVVP 243 (309)
T ss_pred --HhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEEEEe---cCCCceEEEc---C----CccEEEeC
Confidence 12468999999999999999987766778888999998877 7899999 8999987643 2 45667777
Q ss_pred cccCCc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 295 PQFDAS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 295 ~~v~~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
++++.+ |+||||+|+|+|+++|++ |+++++|+++|++++...+++
T Consensus 244 ~~v~vvDttGAGDaf~ag~l~~l~~-g~~~~~al~~a~a~aa~~v~~ 289 (309)
T PRK10294 244 PPVKSQSTVGAGDSMVGAMTLKLAE-NASLEEMVRFGVAAGSAATLN 289 (309)
T ss_pred CCcccCCCcchHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcC
Confidence 777777 999999999999999999 999999999999987666654
No 35
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.80 E-value=6.7e-18 Score=159.65 Aligned_cols=177 Identities=23% Similarity=0.280 Sum_probs=132.5
Q ss_pred cccCCHHHHHHHHHHhhhCCCCccCEEEE-eeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHH
Q psy11349 137 GKVITEQDFDELIEGLKMNDLMDYTHVLT-GYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIY 215 (360)
Q Consensus 137 g~~l~~~~l~~ll~~~~~~~~~~~d~i~~-G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~ 215 (360)
+..++.++++.+++.+... +.+++++++ |+.......+.+..+++.+++.+ .++++||... . +
T Consensus 106 ~~~~~~~~~~~~~~~~~~~-~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~D~~~~---------~----~ 169 (303)
T TIGR03168 106 GPEISEEELEQLLEKLREL-LASGDIVVISGSLPPGVPPDFYAQLIAIARKRG--AKVILDTSGE---------A----L 169 (303)
T ss_pred CCCCCHHHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCCHHHHHHHHHHHHHCC--CEEEEECCcH---------H----H
Confidence 4456667676655443210 125787665 65533233455677778787766 7899999421 1 1
Q ss_pred HHhhcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEec
Q psy11349 216 ANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIP 295 (360)
Q Consensus 216 ~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
.+.+..++|+++||+.|+..++|.+..+.+++.++++.+.+.+++.|++| +|++|++++. + ++.++++.+
T Consensus 170 ~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vviT---~g~~G~~~~~---~----~~~~~~~~~ 239 (303)
T TIGR03168 170 REALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARELLDRGAENVLVS---LGADGALLVT---K----EGALKATPP 239 (303)
T ss_pred HHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEe---ecCCCcEEEe---C----CceEEeeCC
Confidence 12333589999999999999999877666788888999988899999999 8999987643 3 556778887
Q ss_pred ccCCc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 296 QFDAS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 296 ~v~~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
+++.. ++||||+|+|+|++++++ |.++++|+++|++++...+++
T Consensus 240 ~~~~vDttGAGD~F~a~~~~~l~~-g~~i~~a~~~A~~~aa~~~~~ 284 (303)
T TIGR03168 240 KVEVVNTVGAGDSMVAGFLAGLAR-GLSLEEALRFAVAAGSAAAFS 284 (303)
T ss_pred cceeecCcCHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcC
Confidence 77766 999999999999999999 999999999999998776654
No 36
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.80 E-value=3.4e-18 Score=160.73 Aligned_cols=170 Identities=26% Similarity=0.340 Sum_probs=129.7
Q ss_pred cCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHh
Q psy11349 139 VITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANE 218 (360)
Q Consensus 139 ~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ 218 (360)
.+++++++.+.+.++ +.+++++..-. ..+.+.++++.+++++ +++++||.... +.. ...
T Consensus 109 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~v~~D~~~~~-------~~~----~~~ 167 (293)
T TIGR02152 109 ELTPEDIDAAEALIA-----ESDIVLLQLEI---PLETVLEAAKIAKKHG--VKVILNPAPAI-------KDL----DDE 167 (293)
T ss_pred cCCHHHHHHHHhhhc-----cCCEEEEecCC---CHHHHHHHHHHHHHcC--CEEEEECCcCc-------ccc----hHH
Confidence 566677776655554 57777654211 2345566777777766 78999995321 111 135
Q ss_pred hcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccC
Q psy11349 219 LLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFD 298 (360)
Q Consensus 219 ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 298 (360)
+++++|+++||..|++.|++.+..+.+++.++++.+.+.|++.|++| .|++|+.++. + ++.++++.++++
T Consensus 168 ~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt---~G~~g~~~~~---~----~~~~~~~~~~~~ 237 (293)
T TIGR02152 168 LLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIIT---LGSKGALLVS---K----DESKLIPAFKVK 237 (293)
T ss_pred HHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHHcCCCeEEEE---eCCCceEEEe---C----CceeEccCCCCc
Confidence 67899999999999999999876666778888899998899999999 8999987653 3 556677777777
Q ss_pred Cc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 299 AS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 299 ~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
.. |+||||+|+|+|++++++ |+++++|+++|++++...+++
T Consensus 238 ~vdt~GAGDaf~Ag~l~~l~~-g~~~~~al~~a~~~Aa~~~~~ 279 (293)
T TIGR02152 238 AVDTTAAGDTFNGAFAVALAE-GKSLEDAIRFANAAAAISVTR 279 (293)
T ss_pred eeCCCCcHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHcc
Confidence 66 999999999999999999 999999999999998777654
No 37
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.80 E-value=8.1e-18 Score=158.02 Aligned_cols=177 Identities=23% Similarity=0.269 Sum_probs=132.8
Q ss_pred cccCCHHHHHHHHHHhhhCCCCccCEEEE-eeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHH
Q psy11349 137 GKVITEQDFDELIEGLKMNDLMDYTHVLT-GYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIY 215 (360)
Q Consensus 137 g~~l~~~~l~~ll~~~~~~~~~~~d~i~~-G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~ 215 (360)
+..++.++++.+++.+... +.+++++++ |.++.....+.+.++++.+++.+ .++++||.... +
T Consensus 107 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~--~~i~~D~~~~~-------------~ 170 (289)
T cd01164 107 GPEISEEELEALLEKLKAL-LKKGDIVVLSGSLPPGVPADFYAELVRLAREKG--ARVILDTSGEA-------------L 170 (289)
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCCCEEEEeCCCCCCcCHHHHHHHHHHHHHcC--CeEEEECChHH-------------H
Confidence 4456666676665544211 125786654 76654223345566777777666 78999994221 1
Q ss_pred HHhhcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEec
Q psy11349 216 ANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIP 295 (360)
Q Consensus 216 ~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
.+.+.+++|+++||+.|++.+++....+.+++.++++.|.+.+++.|++| +|++|++.+. + ++.++++.+
T Consensus 171 ~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt---~G~~G~~~~~---~----~~~~~~~~~ 240 (289)
T cd01164 171 LAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLIERGAENVLVS---LGADGALLVT---K----DGVYRASPP 240 (289)
T ss_pred HHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEe---cCCCCCEEEc---C----CcEEEecCC
Confidence 11222699999999999999999877777888899999999999999999 9999987643 2 556778877
Q ss_pred ccCCc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 296 QFDAS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 296 ~v~~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
+.+.+ |+||||+|+|+|+++|++ |+++++|+++|+++++..+++
T Consensus 241 ~~~vvDttGAGDaf~a~~i~~l~~-g~~~~~a~~~A~~~Aa~~~~~ 285 (289)
T cd01164 241 KVKVVSTVGAGDSMVAGFVAGLAQ-GLSLEEALRLAVAAGSATAFS 285 (289)
T ss_pred CccccCCCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcC
Confidence 77766 999999999999999999 999999999999998666643
No 38
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.79 E-value=1.4e-17 Score=158.23 Aligned_cols=177 Identities=18% Similarity=0.217 Sum_probs=133.7
Q ss_pred cccCCHHHHHHHHHHhhhCCCCccCEE-EEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHH
Q psy11349 137 GKVITEQDFDELIEGLKMNDLMDYTHV-LTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIY 215 (360)
Q Consensus 137 g~~l~~~~l~~ll~~~~~~~~~~~d~i-~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~ 215 (360)
+..+++.+++.+...... .+.++|++ +.|++++....+.+.++++.+++.| .++++||... . +
T Consensus 110 ~~~~~~~~~~~~~~~~~~-~l~~~d~v~~~g~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~----------~---~ 173 (312)
T PRK09513 110 GFEVTPADWERFVTDSLS-WLGQFDMVAVSGSLPRGVSPEAFTDWMTRLRSQC--PCIIFDSSRE----------A---L 173 (312)
T ss_pred CCCCCHHHHHHHHHHHHh-hcCCCCEEEEECCCCCCCCHHHHHHHHHHHHhcC--CEEEEECChH----------H---H
Confidence 334555555544322111 11368876 6687765445567778888888766 7899999521 1 1
Q ss_pred HHhhcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEec
Q psy11349 216 ANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIP 295 (360)
Q Consensus 216 ~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
...+...+++++||+.|+..++|.+..+.+++.++++.+.+.|++.|++| +|++|++++. + ++.++.+.+
T Consensus 174 ~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt---~G~~G~~~~~---~----~~~~~~~~~ 243 (312)
T PRK09513 174 VAGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHALREQGIAHVVIS---LGAEGALWVN---A----SGEWIAKPP 243 (312)
T ss_pred HHHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEE---eCCCCcEEEe---C----CceEEecCC
Confidence 12344678999999999999999876667788888999988999999999 9999987643 2 455667777
Q ss_pred ccCCc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 296 QFDAS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 296 ~v~~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
+++.+ |+||||+|+|+|+++|++ |+++++|+++|++++...+++
T Consensus 244 ~~~~vDttGAGDaf~ag~i~~l~~-g~~~~~a~~~A~a~Aa~~~~~ 288 (312)
T PRK09513 244 ACDVVSTVGAGDSMVGGLIYGLLM-RESSEHTLRLATAVSALAVSQ 288 (312)
T ss_pred CccccCCCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhhC
Confidence 77776 999999999999999999 999999999999998777765
No 39
>PTZ00247 adenosine kinase; Provisional
Probab=99.78 E-value=2.9e-17 Score=158.31 Aligned_cols=162 Identities=17% Similarity=0.261 Sum_probs=116.6
Q ss_pred ccCEEEE-eeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhcc
Q psy11349 159 DYTHVLT-GYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLT 237 (360)
Q Consensus 159 ~~d~i~~-G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~ 237 (360)
+.+++++ |+... ...+.+.++++.+++.+ +++++||... ++.....+.+ .++++++|+++||+.|++.|+
T Consensus 159 ~~~~v~~~g~~~~-~~~~~~~~~~~~a~~~g--~~v~~d~~~~-----~~~~~~~~~~-~~~l~~~Dil~~N~~Ea~~l~ 229 (345)
T PTZ00247 159 TAQLYYLEGFFLT-VSPNNVLQVAKHARESG--KLFCLNLSAP-----FISQFFFERL-LQVLPYVDILFGNEEEAKTFA 229 (345)
T ss_pred hCCEEEEEEEEec-ccHHHHHHHHHHHHHcC--CEEEEECCcH-----HHHHHHHHHH-HHHHhhCCEEEeCHHHHHHHh
Confidence 4676654 54322 12356777888888877 8899997311 0001111223 467889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh------cCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccC---Cc-ccCchHH
Q psy11349 238 KIPIKDKASLLKTINVLHD------RGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFD---AS-FTGTGDL 307 (360)
Q Consensus 238 g~~~~~~~d~~~aa~~l~~------~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~---~~-t~GaGD~ 307 (360)
|....+.++..++++.+.+ .+.+.|+|| +|++|+++.. + ++.++++.++++ ++ |+||||+
T Consensus 230 g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT---~G~~G~~~~~---~----~~~~~~~~~~v~~~~vVDTtGAGDa 299 (345)
T PTZ00247 230 KAMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFT---QGPEPTLIAT---K----DGVTSVPVPPLDQEKIVDTNGAGDA 299 (345)
T ss_pred hccCCCccCHHHHHHHHHhccccccCCCCEEEEe---cCCCceEEEE---C----CEEEEEeccccCCCCccCCCChHHH
Confidence 8421112345566666653 247799999 9999988654 3 566677877773 55 9999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 308 FAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 308 f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
|.|+|+++|++ |+++++|+++|+++++.++++
T Consensus 300 F~agfl~~l~~-g~~~~~al~~a~~aAa~~v~~ 331 (345)
T PTZ00247 300 FVGGFLAQYAN-GKDIDRCVEAGHYSAQVIIQH 331 (345)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999 999999999999998777765
No 40
>PRK09850 pseudouridine kinase; Provisional
Probab=99.77 E-value=2.5e-17 Score=156.62 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=115.5
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccC
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTK 238 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g 238 (360)
.++++++....+. +.+..+++.. .+ +++++||...+. . ..+ ..+++++|+++||+.|++.|+|
T Consensus 134 ~~~~v~~~~~~~~---~~~~~~~~~~--~g--~~v~~D~~~~~~-----~----~~~-~~~l~~~dil~~N~~Ea~~l~g 196 (313)
T PRK09850 134 RAKVIVADCNISE---EALAWILDNA--AN--VPVFVDPVSAWK-----C----VKV-RDRLNQIHTLKPNRLEAETLSG 196 (313)
T ss_pred cCCEEEEeCCCCH---HHHHHHHHhc--cC--CCEEEEcCCHHH-----H----HHH-HhhhccceEEccCHHHHHHHhC
Confidence 5777665332222 2333333322 24 789999963210 0 112 3567899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHH
Q psy11349 239 IPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYIT 317 (360)
Q Consensus 239 ~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~ 317 (360)
....+.+++.++++.|.+.|.+.|+|| +|++|+++... + ++..+++.++++.+ |+||||+|.|+|+++++
T Consensus 197 ~~~~~~~~~~~~~~~l~~~g~~~vvvT---~G~~G~~~~~~--~----~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~ 267 (313)
T PRK09850 197 IALSGREDVAKVAAWFHQHGLNRLVLS---MGGDGVYYSDI--S----GESGWSAPIKTNVINVTGAGDAMMAGLASCWV 267 (313)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEE---eCCceEEEEcC--C----CCeEecCCCCcccccCCCcHHHHHHHHHHHHH
Confidence 776666788888999988899999999 99999876531 2 34455676677777 99999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy11349 318 RTNHNVKESLERTIATIQSVLE 339 (360)
Q Consensus 318 ~~g~~l~~A~~~A~a~~~~~l~ 339 (360)
+ |+++++|+++|+++++.+++
T Consensus 268 ~-g~~~~eal~~a~a~aa~~~~ 288 (313)
T PRK09850 268 D-GMPFAESVRFAQGCSSMALS 288 (313)
T ss_pred c-CCCHHHHHHHHHHHHHHHhc
Confidence 9 99999999999999877775
No 41
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.77 E-value=1.5e-17 Score=157.90 Aligned_cols=159 Identities=17% Similarity=0.133 Sum_probs=120.7
Q ss_pred ccCEEEE-eeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhcc
Q psy11349 159 DYTHVLT-GYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLT 237 (360)
Q Consensus 159 ~~d~i~~-G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~ 237 (360)
+++++++ |+..... .+.+..+++.+++.+ +++++||+... ..+...+.+ ..+++++|+++||+.|++.|+
T Consensus 145 ~~~~v~~~~~~~~~~-~~~~~~~~~~a~~~g--~~v~~d~~~~~-----~~~~~~~~~-~~~l~~~d~l~~n~~E~~~l~ 215 (312)
T cd01168 145 KAKYLYLEGYLLTVP-PEAILLAAEHAKENG--VKIALNLSAPF-----IVQRFKEAL-LELLPYVDILFGNEEEAEALA 215 (312)
T ss_pred cCCEEEEEEEecCCC-HHHHHHHHHHHHHcC--CEEEEeCCcHH-----HHHHHHHHH-HHHHhhCCEEEeCHHHHHHHh
Confidence 5776654 5433211 266677778787766 89999995211 001122233 467799999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecc-cCCc-ccCchHHHHHHHHHH
Q psy11349 238 KIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQ-FDAS-FTGTGDLFAALMLAY 315 (360)
Q Consensus 238 g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-v~~~-t~GaGD~f~a~~~a~ 315 (360)
|.+. ++..++++.+++.+++.|++| +|++|++++. + ++.+++++++ ++.+ |+||||+|+|+|+++
T Consensus 216 ~~~~---~~~~~~a~~l~~~g~~~vvvt---~G~~G~~~~~---~----~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~ 282 (312)
T cd01168 216 EAET---TDDLEAALKLLALRCRIVVIT---QGAKGAVVVE---G----GEVYPVPAIPVEKIVDTNGAGDAFAGGFLYG 282 (312)
T ss_pred CCCC---CChHHHHHHHHhcCCCEEEEe---cCCCCeEEEE---C----CEEEeCCCCCCCCcccCCchHHHHHHHHHHH
Confidence 8632 345677888988999999999 9999987653 3 5667777777 6666 999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 316 ITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 316 L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
+++ |+++++|+++|++++..++++
T Consensus 283 l~~-g~~~~~a~~~a~~~Aa~~v~~ 306 (312)
T cd01168 283 LVQ-GEPLEECIRLGSYAAAEVIQQ 306 (312)
T ss_pred HHc-CCCHHHHHHHHHHHHHHHHhc
Confidence 999 999999999999998877765
No 42
>PRK09954 putative kinase; Provisional
Probab=99.77 E-value=3.4e-17 Score=158.84 Aligned_cols=169 Identities=16% Similarity=0.137 Sum_probs=121.6
Q ss_pred cCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHh
Q psy11349 139 VITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANE 218 (360)
Q Consensus 139 ~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ 218 (360)
.++++.++...+.+. +.+.+++..-.+++ .+..+++.+ ++ +++++||..... .+.+ .+
T Consensus 172 ~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~---~~~~~~~~a--~~--~~v~~D~~~~~~---------~~~~-~~ 229 (362)
T PRK09954 172 QLTPQLLNGSRDLIR-----HAGVVLADCNLTAE---ALEWVFTLA--DE--IPVFVDTVSEFK---------AGKI-KH 229 (362)
T ss_pred cCCHHHHHHHHHHHh-----cCCEEEEECCCCHH---HHHHHHHhC--CC--CcEEEECCCHHH---------hhhh-hh
Confidence 445555554444444 46766654432332 223333332 23 789999853110 0112 36
Q ss_pred hcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccC
Q psy11349 219 LLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFD 298 (360)
Q Consensus 219 ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 298 (360)
+++++|+++||+.|++.|+|....+.++..++++.+.+.|++.|+|| +|++|+++... + ++.++++.++++
T Consensus 230 ~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt---~G~~G~~~~~~--~----~~~~~~~~~~v~ 300 (362)
T PRK09954 230 WLAHIHTLKPTQPELEILWGQAITSDADRNAAVNALHQQGVQQIFVY---LPDESVFCSEK--D----GEQFLLTAPAHT 300 (362)
T ss_pred hhccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEE---eCCccEEEEeC--C----CceEeccCCCcc
Confidence 78899999999999999999876666677888899999999999999 99999865431 2 345666777777
Q ss_pred Cc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy11349 299 AS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLE 339 (360)
Q Consensus 299 ~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~ 339 (360)
.+ |+||||+|.|+|+++|++ |+++++|+++|++++..++.
T Consensus 301 vvDttGAGDaF~Ag~l~~l~~-g~~~~eal~~a~a~Aal~~~ 341 (362)
T PRK09954 301 TVDSFGADDGFMAGLVYSFLE-GYSFRDSARFAMACAAISRA 341 (362)
T ss_pred cccccchHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhc
Confidence 77 999999999999999999 99999999999998766543
No 43
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.77 E-value=1.4e-17 Score=157.25 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=121.8
Q ss_pred ccCEEEE-eeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhcc
Q psy11349 159 DYTHVLT-GYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLT 237 (360)
Q Consensus 159 ~~d~i~~-G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~ 237 (360)
+++++++ |+.......+.+.++++.+++.+ +++++||.... + .+++++|+++||+.|++.++
T Consensus 134 ~~~~v~~s~~~~~~~~~~~~~~~~~~a~~~~--~~v~~D~~~~~----~-----------~~~~~~d~l~~n~~E~~~l~ 196 (304)
T cd01172 134 EADVVILSDYGKGVLTPRVIEALIAAARELG--IPVLVDPKGRD----Y-----------SKYRGATLLTPNEKEAREAL 196 (304)
T ss_pred cCCEEEEEcCCCCccCHHHHHHHHHHHHhcC--CCEEEeCCCcc----h-----------hhccCCcEeCCCHHHHHHHh
Confidence 6787765 55432222355667777777766 78999995321 1 34678999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHH
Q psy11349 238 KIPIKDKASLLKTINVLHD-RGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAY 315 (360)
Q Consensus 238 g~~~~~~~d~~~aa~~l~~-~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~ 315 (360)
+....+.+++.++++++.+ .|++.|+|| +|++|++++.. + ++.+++++++++.+ |+||||+|+|+|+++
T Consensus 197 ~~~~~~~~~~~~~~~~l~~~~g~~~vvvt---~G~~G~~~~~~--~----~~~~~~~~~~~~vvdttGAGDaf~ag~i~~ 267 (304)
T cd01172 197 GDEINDDDELEAAGEKLLELLNLEALLVT---LGEEGMTLFER--D----GEVQHIPALAKEVYDVTGAGDTVIATLALA 267 (304)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCeEEEE---cCCCccEEEcC--C----CcEEEecCCCCCCCCCcCccHHHHHHHHHH
Confidence 9876666788888888764 689999999 99999876531 2 56778888888877 999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 316 ITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 316 L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
|++ |+++++|+++|+++++.++++
T Consensus 268 l~~-g~~~~~al~~a~a~Aa~~~~~ 291 (304)
T cd01172 268 LAA-GADLEEAAFLANAAAGVVVGK 291 (304)
T ss_pred HHc-CCCHHHHHHHHHHHhheeeec
Confidence 999 999999999999998776654
No 44
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.76 E-value=3.8e-17 Score=155.02 Aligned_cols=158 Identities=18% Similarity=0.151 Sum_probs=122.4
Q ss_pred ccCEEE-EeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhcc
Q psy11349 159 DYTHVL-TGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLT 237 (360)
Q Consensus 159 ~~d~i~-~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~ 237 (360)
+.++++ .|++......+.+.++++.+++++ +++++||+... .+.+. ..++++|+++||+.|++.|+
T Consensus 126 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~----------~~~~~-~~~~~~dil~~n~~E~~~l~ 192 (309)
T TIGR01231 126 KVEVVAISGSLPKGLPQDYYAQIIERCQNKG--VPVVLDCSGAT----------LQTVL-ENPAKPTVIKPNIEELSQLL 192 (309)
T ss_pred cCCEEEEECCCCCCcCHHHHHHHHHHHHhCC--CeEEEECChHH----------HHHHH-hccCCCeEEcCCHHHHHHHh
Confidence 578664 466543223456677888888877 89999996421 11221 34568999999999999999
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHH
Q psy11349 238 KIPIK-DKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAY 315 (360)
Q Consensus 238 g~~~~-~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~ 315 (360)
|.+.. +.+++.++++++.+.|.+.|++| +|++|++++. + ++.++.+.+.++.+ |+||||+|.|+|+++
T Consensus 193 g~~~~~~~~~~~~~~~~~~~~g~~~vivT---~G~~G~~~~~---~----~~~~~~~~~~v~vvDttGAGDaF~agfl~~ 262 (309)
T TIGR01231 193 NQELTEDLESLKQALSQPLFSGIEWIIVS---LGAQGAFAKH---G----HTFYKVNIPTISVVNPVGSGDSTVAGITSA 262 (309)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEc---cCCCceEEEe---C----CeeEEeeCCccCcCCCcchHHHHHHHHHHH
Confidence 97543 45677778888878899999999 9999987643 2 55677888888877 999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 316 ITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 316 L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
|++ |+++++|+++|+++++...++
T Consensus 263 l~~-g~~~~~a~~~a~a~aa~~~~~ 286 (309)
T TIGR01231 263 LLN-HESDHDLLKKANTLGMLNAQE 286 (309)
T ss_pred HHc-CCCHHHHHHHHHHHHHHHhcC
Confidence 999 999999999999987666653
No 45
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.76 E-value=3.3e-17 Score=155.69 Aligned_cols=154 Identities=17% Similarity=0.197 Sum_probs=118.5
Q ss_pred ccCEEEE-eeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhcc
Q psy11349 159 DYTHVLT-GYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLT 237 (360)
Q Consensus 159 ~~d~i~~-G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~ 237 (360)
++|++++ |+.......+.+..+++.+++.+ +++++||+.. .+ ..++++|+++||+.|++.|+
T Consensus 143 ~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~----~~-----------~~~~~~d~l~~n~~E~~~l~ 205 (315)
T TIGR02198 143 SADAVVLSDYAKGVLTPRVVQEVIAAARKHG--KPVLVDPKGK----DF-----------SRYRGATLITPNRKEAEAAV 205 (315)
T ss_pred hCCEEEEecCCCCccCHHHHHHHHHHHHhcC--CCEEEeCCCc----ch-----------hhcCCCcEECCCHHHHHHHh
Confidence 6887765 44322223345667778888876 8899999532 11 24678999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHH
Q psy11349 238 KIPIKDKASLLKTINVLHD-RGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAY 315 (360)
Q Consensus 238 g~~~~~~~d~~~aa~~l~~-~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~ 315 (360)
+ ...+.++..++++.+.+ .|++.|+|| +|++|++++.. + +..++++.++++.+ |+||||+|+|+|+++
T Consensus 206 ~-~~~~~~~~~~~~~~l~~~~g~~~vivT---~G~~G~~~~~~--~----~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~ 275 (315)
T TIGR02198 206 G-ACDTEAELVQAAEKLLEELDLEALLVT---RSEKGMTLFTR--E----GEPIHIPAQAREVYDVTGAGDTVIATLALA 275 (315)
T ss_pred C-CCCCHHHHHHHHHHHHHHcCCCEEEEE---cCCCCeEEEec--C----CCeEEecCCCCCCCCCcCccHHHHHHHHHH
Confidence 9 33445677788877764 689999999 99999876431 2 45677777777777 999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 316 ITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 316 L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
+++ |+++++|+++|+++++.++++
T Consensus 276 l~~-g~~~~~al~~A~~~aa~~~~~ 299 (315)
T TIGR02198 276 LAA-GASLEEACRLANAAAGVVVGK 299 (315)
T ss_pred HHc-CCCHHHHHHHHHHHhhhhhcc
Confidence 999 999999999999988776654
No 46
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.75 E-value=2.6e-17 Score=164.60 Aligned_cols=161 Identities=21% Similarity=0.179 Sum_probs=123.0
Q ss_pred ccCEEE-EeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCC-cCcHHHHHHhhcccceEEeCCHHHHHhc
Q psy11349 159 DYTHVL-TGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVP-EEVLPIYANELLSVADVICPNQFEAELL 236 (360)
Q Consensus 159 ~~d~i~-~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~-~~~~~~~~~~ll~~~diitpN~~E~~~L 236 (360)
.+++++ .|+.......+.+.++++.+++.+ +++++||.++... .|.. ++..+.+ +.+++++|+++||+.|++.|
T Consensus 224 ~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g--~~V~~Dp~~~~~~-~~~~~~~~~~~l-~~~L~~~Dil~~Ne~Ea~~l 299 (470)
T PLN02341 224 QSKALFCNGYVFDELSPSAIASAVDYAIDVG--TAVFFDPGPRGKS-LLVGTPDERRAL-EHLLRMSDVLLLTSEEAEAL 299 (470)
T ss_pred cCCEEEEeceeCCcCCHHHHHHHHHHHHHcC--CEEEEeCCCcccc-cccChHHHHHHH-HHHHhhCCEEEecHHHHHHH
Confidence 577665 566543334566778888888877 8999999754211 1211 1122333 47888999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHH
Q psy11349 237 TKIPIKDKASLLKTINVLHDRG--IKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALML 313 (360)
Q Consensus 237 ~g~~~~~~~d~~~aa~~l~~~g--~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~ 313 (360)
+|.+ +..++++.|.+.+ .+.|+|| +|++|++++. + ++.++++.++++.+ |+||||+|.|+|+
T Consensus 300 ~g~~-----~~~~a~~~l~~~g~~~k~VVVT---lG~~Ga~~~~---~----~~~~~vpa~~v~vVDTtGAGDaF~Agfl 364 (470)
T PLN02341 300 TGIR-----NPILAGQELLRPGIRTKWVVVK---MGSKGSILVT---R----SSVSCAPAFKVNVVDTVGCGDSFAAAIA 364 (470)
T ss_pred hCCC-----CHHHHHHHHHhcCCCCCEEEEe---eCCCCeEEEE---C----CeeEEeCCCCcCCCCCcCccHHHHHHHH
Confidence 9962 4566778887766 4799999 9999998754 3 56777888888877 9999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy11349 314 AYITRTNHNVKESLERTIATIQSVLE 339 (360)
Q Consensus 314 a~L~~~g~~l~~A~~~A~a~~~~~l~ 339 (360)
+++++ |+++++|+++|++++..++.
T Consensus 365 ~gll~-G~~l~eal~~A~a~aA~~v~ 389 (470)
T PLN02341 365 LGYIH-NLPLVNTLTLANAVGAATAM 389 (470)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHHHc
Confidence 99999 99999999999998765553
No 47
>PLN02323 probable fructokinase
Probab=99.75 E-value=1.2e-16 Score=153.01 Aligned_cols=162 Identities=18% Similarity=0.131 Sum_probs=117.6
Q ss_pred ccCEEEEeeeC--CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCc-CcHHHHHHhhcccceEEeCCHHHHHh
Q psy11349 159 DYTHVLTGYCR--SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPE-EVLPIYANELLSVADVICPNQFEAEL 235 (360)
Q Consensus 159 ~~d~i~~G~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~-~~~~~~~~~ll~~~diitpN~~E~~~ 235 (360)
.++++..+... .+.....+..+++.+++.+ .++++||.++.. .|... ...+.+ ..+++++|+++||+.|++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~--~~~~~~~~~~~~-~~~l~~~dil~~n~~E~~~ 210 (330)
T PLN02323 136 KAKIFHYGSISLITEPCRSAHLAAMKIAKEAG--ALLSYDPNLRLP--LWPSAEAAREGI-MSIWDEADIIKVSDEEVEF 210 (330)
T ss_pred cCCEEEEechhccCchHHHHHHHHHHHHHHcC--CEEEEcCCCChh--hccCHHHHHHHH-HHHHHhCCEEEcCHHHHHH
Confidence 46666655442 2333355667788888877 899999976532 22211 222333 4677899999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHH
Q psy11349 236 LTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLA 314 (360)
Q Consensus 236 L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a 314 (360)
++|....+.++ +. ++...|++.|++| +|++|++++. + ++.++++.++++.+ |+||||+|.|+|++
T Consensus 211 l~g~~~~~~~~---~~-~~~~~g~~~vvvt---~G~~G~~~~~---~----~~~~~~~~~~v~vvDttGAGDaf~Agfl~ 276 (330)
T PLN02323 211 LTGGDDPDDDT---VV-KLWHPNLKLLLVT---EGEEGCRYYT---K----DFKGRVEGFKVKAVDTTGAGDAFVGGLLS 276 (330)
T ss_pred HhCCCCccHHH---HH-HHHhcCCCEEEEe---cCCCceEEEe---C----CCceEeCCccCCCCCCCCcHHHHHHHHHH
Confidence 99875432222 22 4445788999999 9999987653 2 44567777777777 99999999999999
Q ss_pred HHHcCCCC-------HHHHHHHHHHHHHHHHHH
Q psy11349 315 YITRTNHN-------VKESLERTIATIQSVLER 340 (360)
Q Consensus 315 ~L~~~g~~-------l~~A~~~A~a~~~~~l~~ 340 (360)
++++ |++ +++|+++|++++..++++
T Consensus 277 ~l~~-g~~~~~~~~~l~~al~~a~a~Aa~~v~~ 308 (330)
T PLN02323 277 QLAK-DLSLLEDEERLREALRFANACGAITTTE 308 (330)
T ss_pred HHHc-CCccccchHHHHHHHHHHHHHHHHHHhc
Confidence 9999 976 899999999998777765
No 48
>PLN02967 kinase
Probab=99.75 E-value=7e-17 Score=162.60 Aligned_cols=164 Identities=16% Similarity=0.151 Sum_probs=116.2
Q ss_pred ccCEEEEeeeC--CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCC-cCcHHHHHHhhcccceEEeCCHHHHHh
Q psy11349 159 DYTHVLTGYCR--SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVP-EEVLPIYANELLSVADVICPNQFEAEL 235 (360)
Q Consensus 159 ~~d~i~~G~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~-~~~~~~~~~~ll~~~diitpN~~E~~~ 235 (360)
.++++++|... ++...+.+.++++.+++.| ++++|||+++.. +|.. ++..+.+ .++++++|+|++|+.|++.
T Consensus 335 ~A~i~hfgg~~ll~e~~~~all~alk~Ak~~G--v~VsFDpNlR~~--lw~~~e~~~e~i-~elL~~aDILk~NeeEl~~ 409 (581)
T PLN02967 335 EAKMFYFNTHSLLDPTMRSTTLRAIKISKKLG--GVIFYDLNLPLP--LWSSSEETKSFI-QEAWNLADIIEVTKQELEF 409 (581)
T ss_pred CCCEEEEeCchhcccchHHHHHHHHHHHHHCC--CEEEEECCCCcc--cccchHHHHHHH-HHHHHhCCEEEECHHHHHH
Confidence 57778776653 3444577888899898877 899999987753 3322 2233444 4788999999999999999
Q ss_pred ccCCCCCCH-----H-------HHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCC--c-
Q psy11349 236 LTKIPIKDK-----A-------SLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDA--S- 300 (360)
Q Consensus 236 L~g~~~~~~-----~-------d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~--~- 300 (360)
|+|...... + ...+.++.+...+++.|+|| +|++|++++..... +....++.+.+++ +
T Consensus 410 LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~g~k~VVVT---lG~~Ga~~~~~~~~----~~v~~~~a~~V~V~vVD 482 (581)
T PLN02967 410 LCGIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVT---NGTSKIHYYTKEHN----GAVHGMEDAPITPFTSD 482 (581)
T ss_pred HhCCCccccccccccchhccccchHHHHHHHHhCCCCEEEEE---ECccceEEEECCCc----eeEeeccCCCCCCCCCC
Confidence 998532100 0 01234566767789999999 99999876542100 1233344455553 5
Q ss_pred ccCchHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHH
Q psy11349 301 FTGTGDLFAALMLAYITRTN-------HNVKESLERTIATIQ 335 (360)
Q Consensus 301 t~GaGD~f~a~~~a~L~~~g-------~~l~~A~~~A~a~~~ 335 (360)
||||||+|.|+|+++|++ + .++++|+++|+++++
T Consensus 483 TTGAGDAF~AGfL~~Ll~-g~~~~~g~~~LeeaLrfAnAaAA 523 (581)
T PLN02967 483 MSASGDGIVAGLMRMLTV-QPHLITDKGYLEKTIKYAIDCGV 523 (581)
T ss_pred CCchhHHHHHHHHHHHHh-ccCcccccccHHHHHHHHHHHHH
Confidence 999999999999999997 5 579999999999854
No 49
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.75 E-value=1.4e-16 Score=149.53 Aligned_cols=159 Identities=20% Similarity=0.169 Sum_probs=116.2
Q ss_pred ccCEEEE-eeeC--CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHh
Q psy11349 159 DYTHVLT-GYCR--SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAEL 235 (360)
Q Consensus 159 ~~d~i~~-G~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~ 235 (360)
+++++.+ |+.. .....+.+.++++.++ .+ .++++||+++.. .+ . +...+.+++++|+++||+.|++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~v~~D~~~~~~--~~-~----~~~~~~~l~~~d~~~~n~~E~~~ 194 (289)
T cd01944 125 PYDYVYLSGYTLASENASKVILLEWLEALP-AG--TTLVFDPGPRIS--DI-P----DTILQALMAKRPIWSCNREEAAI 194 (289)
T ss_pred CCCEEEEeCccccCcchhHHHHHHHHHhcc-CC--CEEEEcCccccc--cc-C----HHHHHHHHhcCCEEccCHHHHHH
Confidence 5776654 4432 2223556666666644 34 789999976532 11 1 12224678899999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHH
Q psy11349 236 LTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLA 314 (360)
Q Consensus 236 L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a 314 (360)
|+|.... +...+++++.+.+.+.|++| +|++|++.... + +..++.+.++++.+ |+||||+|+|+|++
T Consensus 195 l~g~~~~---~~~~~~~~~~~~~~~~vvvt---~G~~Ga~~~~~--~----~~~~~~~~~~~~vvDt~GAGDaf~ag~l~ 262 (289)
T cd01944 195 FAERGDP---AAEASALRIYAKTAAPVVVR---LGSNGAWIRLP--D----GNTHIIPGFKVKAVDTIGAGDTHAGGMLA 262 (289)
T ss_pred HhCCCCc---chHHHHHHHHhccCCeEEEE---ECCCcEEEEec--C----CCeEEecCCCCCCccCCCchHHHHHHHHH
Confidence 9996432 22344677778888999999 99999876531 2 45567777788777 99999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 315 YITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 315 ~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
++.+ |+++++|+++|++++...+++
T Consensus 263 ~~~~-g~~~~~a~~~a~a~aa~~~~~ 287 (289)
T cd01944 263 GLAK-GMSLADAVLLANAAAAIVVTR 287 (289)
T ss_pred HHHc-CCCHHHHHHHHHHHHHhhhcc
Confidence 9999 999999999999998776653
No 50
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.74 E-value=2.9e-17 Score=154.39 Aligned_cols=161 Identities=24% Similarity=0.219 Sum_probs=122.8
Q ss_pred ccCEEEEeeeC--CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCc-CcHHHHHHhhcccceEEeCCHHHHHh
Q psy11349 159 DYTHVLTGYCR--SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPE-EVLPIYANELLSVADVICPNQFEAEL 235 (360)
Q Consensus 159 ~~d~i~~G~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~-~~~~~~~~~ll~~~diitpN~~E~~~ 235 (360)
+.++++++... ++...+.+.++++.+++.+ .++++||..+.. .|... ...+.+ +.+++++|+++||+.|++.
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~d~~~~~~--~~~~~~~~~~~~-~~~l~~~d~l~~n~~E~~~ 194 (295)
T cd01167 120 EADILHFGSIALASEPSRSALLELLEAAKKAG--VLISFDPNLRPP--LWRDEEEARERI-AELLELADIVKLSDEELEL 194 (295)
T ss_pred cCCEEEEechhhccchHHHHHHHHHHHHHHcC--CEEEEcCCCChh--hcCCHHHHHHHH-HHHHHhCCEEEecHHHHHH
Confidence 57888776542 2333456778888888766 899999975421 22111 112233 4678999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHH
Q psy11349 236 LTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLA 314 (360)
Q Consensus 236 L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a 314 (360)
|+|.+ +..++++.+.+.+++.+++| +|++|++++. . ++.+++++++++.+ |+||||+|+|+|++
T Consensus 195 l~~~~-----~~~~~~~~l~~~g~~~vvvt---~G~~G~~~~~---~----~~~~~~~a~~~~vvDttGAGD~f~a~~~~ 259 (295)
T cd01167 195 LFGEE-----DPEEIAALLLLFGLKLVLVT---RGADGALLYT---K----GGVGEVPGIPVEVVDTTGAGDAFVAGLLA 259 (295)
T ss_pred HhCCC-----CHHHHHHHHhhcCCCEEEEe---cCCcceEEEE---C----CcceeeCCCCcceeeCCCccHHHHHHHHH
Confidence 99864 22345677778899999999 9999987643 3 56678888888777 99999999999999
Q ss_pred HHHcCCC-------CHHHHHHHHHHHHHHHHHH
Q psy11349 315 YITRTNH-------NVKESLERTIATIQSVLER 340 (360)
Q Consensus 315 ~L~~~g~-------~l~~A~~~A~a~~~~~l~~ 340 (360)
+|++ |. ++++|+++|++++...+++
T Consensus 260 ~l~~-g~~~~~~~~~~~~a~~~a~~~aa~~~~~ 291 (295)
T cd01167 260 QLLS-RGLLALDEDELAEALRFANAVGALTCTK 291 (295)
T ss_pred HHHh-CCcccccHHHHHHHHHHHHHhhHHHhcc
Confidence 9999 99 9999999999998777654
No 51
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.74 E-value=3.6e-16 Score=146.42 Aligned_cols=239 Identities=21% Similarity=0.199 Sum_probs=147.8
Q ss_pred eeeechHHHHHHHHHHHhhcccccccccccceeeecccccccccccCCchhhhhcCeeeeeeeee--------eecCCCC
Q psy11349 60 SFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKGQYEVLGFEVDAINTV--------QFSNHSG 131 (360)
Q Consensus 60 ~f~G~gd~~~~~l~~~~~~~~~~~~~~~~~~vl~I~~~~~~~~~~~~~~~~l~~~G~~~~~i~t~--------~~s~~~~ 131 (360)
...|.+-...|..++++.. +..+++.-|.+..+-.... .|+..|+++..+... ...+..+
T Consensus 32 ~~~GG~~~Nva~~l~~lG~---------~~~~~~~lG~D~~g~~i~~---~L~~~gI~~~~~~~~~~~t~~~~~~~~~~~ 99 (288)
T cd01941 32 QSPGGVGRNIAENLARLGV---------SVALLSAVGDDSEGESILE---ESEKAGLNVRGIVFEGRSTASYTAILDKDG 99 (288)
T ss_pred EccCcHHHHHHHHHHHhCC---------CcEEEEEEecCccHHHHHH---HHHHcCCccceeeeCCCCcceEEEEECCCC
Confidence 3455556677767776643 2223333344433333333 677888877554311 0111111
Q ss_pred CCc--ccc----ccCCHHHHHHHHHHhhhCCCCccCEEEE-eeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCC
Q psy11349 132 YGH--LKG----KVITEQDFDELIEGLKMNDLMDYTHVLT-GYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGR 204 (360)
Q Consensus 132 ~~~--~~g----~~l~~~~l~~ll~~~~~~~~~~~d~i~~-G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~ 204 (360)
-.. ... ..++.+.++.+.+.+. +.+++++ |.. ++ ..+.++++.+++.+ .++++||.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~v~~~~~~-~~---~~~~~~~~~a~~~~--~~v~~d~~~~~~-- 166 (288)
T cd01941 100 DLVVALADMDIYELLTPDFLRKIREALK-----EAKPIVVDANL-PE---EALEYLLALAAKHG--VPVAFEPTSAPK-- 166 (288)
T ss_pred CEEEEEechHhhhhCCHHHHHHHHHHHh-----cCCEEEEeCCC-CH---HHHHHHHHhhhhcC--CcEEEEccchHH--
Confidence 000 001 1122222333333344 5777754 332 22 24556666667666 789999853221
Q ss_pred CCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeecc
Q psy11349 205 MYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVG 284 (360)
Q Consensus 205 ~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~ 284 (360)
+ .+ +. ++++++|+++||+.|++.++|.+..+.++..++++.+.+.+++.|++| +|++|++++....+
T Consensus 167 -~--~~----~~-~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvit---~G~~Ga~~~~~~~~-- 233 (288)
T cd01941 167 -L--KK----LF-YLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLPGIKNVIVT---LGAKGVLLSSREGG-- 233 (288)
T ss_pred -h--cc----ch-hhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHHHHcCCcEEEEE---eCCCcEEEEecCCC--
Confidence 1 01 11 467899999999999999999765433444566777888899999999 99999876431001
Q ss_pred CCceEEEEEe-cccCCc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy11349 285 GSKTTVSINI-PQFDAS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLE 339 (360)
Q Consensus 285 ~~~~~~~~~~-~~v~~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~ 339 (360)
+..++++. +..+.+ |+||||+|.|+|+++|++ |+++++|+++|+++++..++
T Consensus 234 --~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~-g~~~~~al~~a~~~Aa~~~~ 287 (288)
T cd01941 234 --VETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLE-GMSLDDSLRFAQAAAALTLE 287 (288)
T ss_pred --ceeEEecCCCCccceeCCCcHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhc
Confidence 34566776 466666 999999999999999999 99999999999999876653
No 52
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.74 E-value=1.2e-16 Score=147.07 Aligned_cols=179 Identities=18% Similarity=0.102 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccC-CCCCCCcCcHHHHHHhhc
Q psy11349 142 EQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN-GRMYVPEEVLPIYANELL 220 (360)
Q Consensus 142 ~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~~~~~ll 220 (360)
+++++++.+.. ++-+|++|++.+ +..+.+...++.+++.+ +|+|+||++... +..+ +. ..+++
T Consensus 40 ~~e~~~~~~~~------~al~ik~G~l~~-~~~~~i~~~~~~~~~~~--~pvVlDPV~~~~s~~r~------~~-~~~Ll 103 (249)
T TIGR00694 40 EEEVAELAKIA------GALVINIGTLDK-ESIEAMIAAGKSANELG--VPVVLDPVGVGATKFRT------ET-ALELL 103 (249)
T ss_pred HHHHHHHHHHc------CceEEeCCCCCH-HHHHHHHHHHHHHHhcC--CCEEEcccccccchhHH------HH-HHHHH
Confidence 45555554332 244677888844 66788888888777665 799999997654 2211 11 13455
Q ss_pred c--cceEEeCCHHHHHhccCCCC--------CCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEE
Q psy11349 221 S--VADVICPNQFEAELLTKIPI--------KDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTV 290 (360)
Q Consensus 221 ~--~~diitpN~~E~~~L~g~~~--------~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~ 290 (360)
+ ++++||||..|+++|+|.+. .+.++..+++++|.+++...|++||. .+++.+ + ++.+
T Consensus 104 ~~~~~~vITpN~~E~~~L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~-------~D~i~~-~----~~~~ 171 (249)
T TIGR00694 104 SEGRFAAIRGNAGEIASLAGETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGE-------VDYVSD-G----TSVY 171 (249)
T ss_pred hhcCCceeCCCHHHHHHHhCCCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEECC-------CcEEEe-C----CEEE
Confidence 5 47999999999999998641 13567888999998876678999964 223322 2 3444
Q ss_pred EEEe-cccCCcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q psy11349 291 SINI-PQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKG 349 (360)
Q Consensus 291 ~~~~-~~v~~~t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~t~~~~~~~~ 349 (360)
.+.. .+.....+|+||+|+|+++++|++ |.++.+|+..|..+...+++.+.+...+.|
T Consensus 172 ~~~~g~~~~~~~~GtGc~LssaIaa~LA~-g~~~~~A~~~A~~~~~~a~~~a~~~~~g~g 230 (249)
T TIGR00694 172 TIHNGTELLGKITGSGCLLGSVVAAFCAV-EEDPLDAAISACLLYKIAGELAAERSKGPG 230 (249)
T ss_pred EECCCChHHhCCccchHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 3322 222222579999999999999999 999999999999999999999876544333
No 53
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.74 E-value=1.9e-16 Score=156.33 Aligned_cols=161 Identities=19% Similarity=0.177 Sum_probs=120.2
Q ss_pred ccCEEEE-eeeC-CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhc
Q psy11349 159 DYTHVLT-GYCR-SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELL 236 (360)
Q Consensus 159 ~~d~i~~-G~l~-~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L 236 (360)
+.+++++ |++. .++..+.+.++++.+++.+ +++++||.... ......+.+.+.+++++|++++|+.|++.|
T Consensus 224 ~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g--~~v~~d~s~~~-----~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l 296 (426)
T PLN02813 224 KSRVLVVEGYLWELPQTIEAIAQACEEAHRAG--ALVAVTASDVS-----CIERHRDDFWDVMGNYADILFANSDEARAL 296 (426)
T ss_pred cCCEEEEEeeecCCCchHHHHHHHHHHHHHcC--CEEEEECCCcc-----hhhhhHHHHHHHHHhcCCEEEeCHHHHHHH
Confidence 5776655 7653 2334567788888888877 89999873211 001112233345668999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHH
Q psy11349 237 TKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAY 315 (360)
Q Consensus 237 ~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~ 315 (360)
+|.... ++..++++.|. ++++.|+|| +|++|+++.. . ++.++++.++++.+ |+||||+|+|+|+++
T Consensus 297 ~g~~~~--~~~~~a~~~L~-~~~~~VVVT---~G~~Ga~~~~---~----~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~ 363 (426)
T PLN02813 297 CGLGSE--ESPESATRYLS-HFCPLVSVT---DGARGSYIGV---K----GEAVYIPPSPCVPVDTCGAGDAYAAGILYG 363 (426)
T ss_pred hCCCCC--CCHHHHHHHHH-cCCCEEEEE---eCCCCeEEEE---C----CEEEEeCCCCCCcccCCChHHHHHHHHHHH
Confidence 986321 34556666665 578999999 9999986543 3 56777888877777 999999999999999
Q ss_pred HHcCCC-CHHHHHHHHHHHHHHHHHH
Q psy11349 316 ITRTNH-NVKESLERTIATIQSVLER 340 (360)
Q Consensus 316 L~~~g~-~l~~A~~~A~a~~~~~l~~ 340 (360)
+++ |+ ++++|+++|++++..++++
T Consensus 364 l~~-G~~~l~~al~~A~a~Aa~~v~~ 388 (426)
T PLN02813 364 LLR-GVSDLRGMGELAARVAATVVGQ 388 (426)
T ss_pred HHc-CCCCHHHHHHHHHHHHHHHHcc
Confidence 999 99 9999999999998777754
No 54
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.72 E-value=6.8e-16 Score=141.33 Aligned_cols=164 Identities=17% Similarity=0.128 Sum_probs=117.0
Q ss_pred cCEEEEeeeC-CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcc--cceEEeCCHHHHHhc
Q psy11349 160 YTHVLTGYCR-SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLS--VADVICPNQFEAELL 236 (360)
Q Consensus 160 ~d~i~~G~l~-~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~--~~diitpN~~E~~~L 236 (360)
.|++++|... .+...+.+...++.+++.+ +++|+||+...... ...+.+ .+++. .+++||||..|++.|
T Consensus 50 ~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~--~pvVlDp~~~~~~~-----~~~~~~-~~ll~~~~~~ilTPN~~Ea~~L 121 (242)
T cd01170 50 AGALVINIGTLTSEQIEAMLKAGKAANQLG--KPVVLDPVGVGATS-----FRTEVA-KELLAEGQPTVIRGNASEIAAL 121 (242)
T ss_pred cCcEEEeCCCCChHHHHHHHHHHHHHHhcC--CCEEEcccccCcch-----hHHHHH-HHHHhcCCCeEEcCCHHHHHHH
Confidence 5666655442 4445666666666677655 78999997654211 111222 24444 499999999999999
Q ss_pred cCCCCC-------C--HHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchH
Q psy11349 237 TKIPIK-------D--KASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGD 306 (360)
Q Consensus 237 ~g~~~~-------~--~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD 306 (360)
+|.+.. + .+++.+++++|.+++...|++||.+ + + +.. + ++.++++....... ++|+||
T Consensus 122 ~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~VllkG~~----d-~--l~~-~----~~~~~~~~~~~~~~~v~GtGd 189 (242)
T cd01170 122 AGLTGLGKGVDSSSSDEEDALELAKALARKYGAVVVVTGEV----D-Y--ITD-G----ERVVVVKNGHPLLTKITGTGC 189 (242)
T ss_pred hCCCCCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEECCC----c-E--EEE-C----CEEEEEeCCCccccCCCchHH
Confidence 997653 2 5788999999998777789999653 2 2 212 2 45566664332223 589999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy11349 307 LFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQS 344 (360)
Q Consensus 307 ~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~t~~~ 344 (360)
+|+|+++++|++ |.++.+|+..|..+...+++.+.+.
T Consensus 190 tLa~aiAa~LA~-g~~~~~A~~~A~~~~~~a~~~a~~~ 226 (242)
T cd01170 190 LLGAVIAAFLAV-GDDPLEAAVSAVLVYGIAGELAAER 226 (242)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999 9999999999999999999988654
No 55
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.72 E-value=3.6e-16 Score=147.09 Aligned_cols=241 Identities=22% Similarity=0.240 Sum_probs=155.5
Q ss_pred eeeechHHHHHHHHHHHhhcccccccccccceeeecccccccccccCCchhhhhcCeeeeeeeeee---------ecCCC
Q psy11349 60 SFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKGQYEVLGFEVDAINTVQ---------FSNHS 130 (360)
Q Consensus 60 ~f~G~gd~~~~~l~~~~~~~~~~~~~~~~~~vl~I~~~~~~~~~~~~~~~~l~~~G~~~~~i~t~~---------~s~~~ 130 (360)
.+.|..=...|..++++.. +..+++.-|.+..+..... .|+..|+++..+.... ..+..
T Consensus 33 ~~~GG~~~n~a~~l~~LG~---------~v~~i~~vG~D~~g~~i~~---~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~ 100 (301)
T PF00294_consen 33 RSPGGAGANVAIALARLGA---------DVALIGKVGDDFFGEIILE---ELKERGVDTSYIPRDGDEPTGRCLIIVDPD 100 (301)
T ss_dssp EEEESHHHHHHHHHHHTTS---------EEEEEEEEESSHHHHHHHH---HHHHTTEEETTEEEESSSEEEEEEEEEETT
T ss_pred EecCcHHHHHHHHHHhccC---------cceEEeeccCcchhhhhhh---ccccccccccccccccccccceeEeeeccc
Confidence 3444444466667777662 2334444455554333433 6788898886554221 11111
Q ss_pred CCCc---ccc--ccCCHHHHHHHHHHhhhCCCCccCEEEEee--eCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCC
Q psy11349 131 GYGH---LKG--KVITEQDFDELIEGLKMNDLMDYTHVLTGY--CRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNG 203 (360)
Q Consensus 131 ~~~~---~~g--~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~--l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g 203 (360)
+... ..+ ..+..+++ ..+.+. +.+++.++. +......+.+..+.+.+++.+ + +||++.+..
T Consensus 101 g~r~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~ 168 (301)
T PF00294_consen 101 GERTFVFSPGANSDLTPDEL--DEEAID-----EADILHLSGVSLPEGIPEDLLEALAKAAKKNG---P--FDPVFRDPS 168 (301)
T ss_dssp SEEEEEEEEGGGGGGGHHHH--HHHHHH-----TESEEEEESGHCSTTSHHHHHHHHHHHHHHTT---E--EEEEEEGGG
T ss_pred ccceeeeccccccccccccc--cccccc-----cccceeecccccccccccceeeeccccccccc---c--ccccccccc
Confidence 1111 111 23333333 233343 477776544 444433444444545444433 2 455444321
Q ss_pred CCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeec
Q psy11349 204 RMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVV 283 (360)
Q Consensus 204 ~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~ 283 (360)
+ +...+.+ .++++.+|+++||+.|++.|++....+.+++.+++++++..+++.+++| +|++|++++. +
T Consensus 169 --~--~~~~~~~-~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt---~G~~G~~~~~---~- 236 (301)
T PF00294_consen 169 --W--DDLREDL-KELLPYADILKPNEEEAEALTGSKIDDPEDALAALRELQARGVKIVIVT---LGEDGALYYT---N- 236 (301)
T ss_dssp --S--HHHHHHH-HHHHHTSSEEEEEHHHHHHHHTCSTSSHHHHHHHHHHHHHTTSSEEEEE---EGGGEEEEEE---T-
T ss_pred --c--cccchhh-hhhccccchhccccccccccccccccchhhhhccccccchhhhhhhhcc---ccccCccccc---c-
Confidence 1 0123444 3667999999999999999999987778899999999999999999999 9999988764 3
Q ss_pred cCCceEEEEEe-cccCCc-ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 284 GGSKTTVSINI-PQFDAS-FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 284 ~~~~~~~~~~~-~~v~~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
++.+++++ ++.+.+ ++||||+|.|+|++++.+ ++++++|+++|+++++..+++
T Consensus 237 ---~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~-~~~~~~a~~~a~~~aa~~v~~ 291 (301)
T PF00294_consen 237 ---DESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLS-GMSLEEALKFANAAAALKVQQ 291 (301)
T ss_dssp ---TEEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHTS
T ss_pred ---cccccccccccccccceeccchhhhHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCC
Confidence 56677777 566666 999999999999999999 999999999999998777753
No 56
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.72 E-value=1.9e-16 Score=149.85 Aligned_cols=161 Identities=22% Similarity=0.233 Sum_probs=121.6
Q ss_pred ccCEEEEeee-C-CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCc-CcHHHHHHhhcccceEEeCCHHHHHh
Q psy11349 159 DYTHVLTGYC-R-SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPE-EVLPIYANELLSVADVICPNQFEAEL 235 (360)
Q Consensus 159 ~~d~i~~G~l-~-~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~-~~~~~~~~~ll~~~diitpN~~E~~~ 235 (360)
+.+++.++.+ . .+.....+.++++.+++++ .++++||..+.. .|... +..+.+ +++++++|+++||+.|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~D~~~~~~--~~~~~~~~~~~~-~~~l~~~dil~~n~~e~~~ 193 (304)
T PRK09434 119 QGEWLHLCSIALSAEPSRSTTFEAMRRIKAAG--GFVSFDPNLRED--LWQDEAELRECL-RQALALADVVKLSEEELCF 193 (304)
T ss_pred CCCEEEEccccccCchHHHHHHHHHHHHHHcC--CEEEECCCCChh--hccCHHHHHHHH-HHHHHhcceeeCCHHHHHH
Confidence 4676665433 2 2333456667888888877 789999986542 33222 223333 4678999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHH
Q psy11349 236 LTKIPIKDKASLLKTINVLHD-RGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALML 313 (360)
Q Consensus 236 L~g~~~~~~~d~~~aa~~l~~-~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~ 313 (360)
++|.+ +..++++.+.+ .+++.|+|| +|++|++++. + ++.++++.++++.+ |+||||+|.|+|+
T Consensus 194 l~g~~-----~~~~~~~~l~~~~g~~~vvvt---~G~~G~~~~~---~----~~~~~~~~~~~~~vDttGAGD~f~ag~~ 258 (304)
T PRK09434 194 LSGTS-----QLEDAIYALADRYPIALLLVT---LGAEGVLVHT---R----GQVQHFPAPSVDPVDTTGAGDAFVAGLL 258 (304)
T ss_pred HhCCC-----CHHHHHHHHHhhcCCcEEEEE---ecCCceEEEe---C----CceeEeCCCCCCCCcCCCchHHHHHHHH
Confidence 99863 45667788876 578899999 9999987653 3 56677888788777 9999999999999
Q ss_pred HHHHcCCC------CHHHHHHHHHHHHHHHHHH
Q psy11349 314 AYITRTNH------NVKESLERTIATIQSVLER 340 (360)
Q Consensus 314 a~L~~~g~------~l~~A~~~A~a~~~~~l~~ 340 (360)
+++++ |+ ++++|+++|++++...+++
T Consensus 259 ~~l~~-g~~~~~~~~~~~a~~~a~~~Aa~~v~~ 290 (304)
T PRK09434 259 AGLSQ-AGLWTDEAELAEIIAQAQACGALATTA 290 (304)
T ss_pred HHHHc-CCCccchHHHHHHHHHHHHHHHHHHcc
Confidence 99999 96 8999999999998776654
No 57
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.71 E-value=7.7e-16 Score=144.01 Aligned_cols=149 Identities=18% Similarity=0.130 Sum_probs=112.8
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccC
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTK 238 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g 238 (360)
++++++++.... +...++++.++++| .++++|..+.. + .+ + +.+++++|+++||+.|++.+++
T Consensus 126 ~~~~v~i~~~~~----~~~~~~~~~~~~~g--~~v~~~~~~~~----~--~~----~-~~~~~~~dil~~n~~e~~~l~~ 188 (284)
T cd01945 126 GADAVLVDGRQP----EAALHLAQEARARG--IPIPLDLDGGG----L--RV----L-EELLPLADHAICSENFLRPNTG 188 (284)
T ss_pred cCCEEEEcCCCH----HHHHHHHHHHHHcC--CCeeEeccCCc----c--cc----h-HHHhccCCEEEeChhHHhhhcC
Confidence 578787654321 34566778788777 55555542221 1 11 2 3677899999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHH
Q psy11349 239 IPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYIT 317 (360)
Q Consensus 239 ~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~ 317 (360)
.. +. ++++.+.+.+.+.|+|| +|++|++.+.. + ++.+++++++++.+ |+||||+|+|+|+++|+
T Consensus 189 ~~-----~~-~~~~~l~~~~~~~vivt---~G~~G~~~~~~--~----~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~ 253 (284)
T cd01945 189 SA-----DD-EALELLASLGIPFVAVT---LGEAGCLWLER--D----GELFHVPAFPVEVVDTTGAGDVFHGAFAHALA 253 (284)
T ss_pred CC-----HH-HHHHHHHhcCCcEEEEE---ECCCCeEEEcC--C----CCEEecCCCccccccCCCcHHHHHHHHHHHHH
Confidence 63 22 66777778899999999 99999876431 2 55677777777777 99999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 318 RTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 318 ~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
+ |+++++|+++|++++...+++
T Consensus 254 ~-g~~~~~al~~a~~~Aa~~~~~ 275 (284)
T cd01945 254 E-GMPLREALRFASAAAALKCRG 275 (284)
T ss_pred c-CCCHHHHHHHHHHHHHHHHhc
Confidence 9 999999999999998777765
No 58
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.70 E-value=1.7e-15 Score=147.08 Aligned_cols=159 Identities=19% Similarity=0.136 Sum_probs=115.2
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhc--ccceEEeCCHHHHHhc
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELL--SVADVICPNQFEAELL 236 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll--~~~diitpN~~E~~~L 236 (360)
+++++++.+... ..+.+.++++.+++++ +++++|+... +..+...+.++ .++ .++|++++|+.|++.+
T Consensus 177 ~~~~v~v~~~~~--~~~~~~~~~~~A~~~g--~~v~lD~s~~-----~~v~~~r~~l~-~ll~~~~vDilf~Ne~Ea~~l 246 (367)
T PLN02379 177 GSKWLVLRYGFY--NLEVIEAAIRLAKQEG--LSVSLDLASF-----EMVRNFRSPLL-QLLESGKIDLCFANEDEAREL 246 (367)
T ss_pred cCCEEEEEcccC--CHHHHHHHHHHHHHcC--CEEEEeccch-----hhhhhhhHHHH-HHhhcCCccEEEcCHHHHHHH
Confidence 578887775431 2456777888888877 8999998421 11112223332 444 4899999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecc-cCCc-ccCchHHHHHHHHH
Q psy11349 237 TKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQ-FDAS-FTGTGDLFAALMLA 314 (360)
Q Consensus 237 ~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-v~~~-t~GaGD~f~a~~~a 314 (360)
++.... ++..++.+ +.+.+++.++|| +|++|++++. + ++.+++++++ .+.+ |+||||+|+|+|++
T Consensus 247 ~~~~~~--~~~~~~~~-~l~~~~~~vvvT---~G~~Ga~~~~---~----~~~~~v~a~~~~~vVDTtGAGDaFaagfl~ 313 (367)
T PLN02379 247 LRGEQE--SDPEAALE-FLAKYCNWAVVT---LGSKGCIARH---G----KEVVRVPAIGETNAVDATGAGDLFASGFLY 313 (367)
T ss_pred hcCCCC--CCHHHHHH-HHHhcCCEEEEE---ECCCCeEEEE---C----CEEEEecCCCCCCcccCCChhHHHHHHHHH
Confidence 974321 13333343 345678999999 9999998753 3 5667777765 3556 99999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHH
Q psy11349 315 YITRTNHNVKESLERTIATIQSVLERT 341 (360)
Q Consensus 315 ~L~~~g~~l~~A~~~A~a~~~~~l~~t 341 (360)
+|.+ |+++++|+++|+++++.++++-
T Consensus 314 gl~~-G~~l~~a~~~g~~aAa~vi~~~ 339 (367)
T PLN02379 314 GLIK-GLSLEECCKVGACSGGSVVRAL 339 (367)
T ss_pred HHHC-CCCHHHHHHHHHHHHHHHHhcc
Confidence 9999 9999999999999998888653
No 59
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.69 E-value=1.7e-15 Score=149.07 Aligned_cols=166 Identities=18% Similarity=0.085 Sum_probs=116.2
Q ss_pred ccCEEE-EeeeCC----HHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHH
Q psy11349 159 DYTHVL-TGYCRS----PQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEA 233 (360)
Q Consensus 159 ~~d~i~-~G~l~~----~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~ 233 (360)
.+++++ .|+... +...+.+.++++.+++.| +++++||+.... .....+.+.+.+++++|++++|+.|+
T Consensus 186 ~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G--~~VslD~s~~~~-----v~~~~~~~~e~l~~~vDILf~NeeEa 258 (434)
T PRK15074 186 GASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHN--VPVVLTLGTKFV-----IEDNPQWWQEFLKEHVSILAMNEDEA 258 (434)
T ss_pred cCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcC--CEEEEECcchhh-----ccccHHHHHHHHHhcCCEEEcCHHHH
Confidence 577665 476643 123466778888888877 899999964321 01112223334567999999999999
Q ss_pred HhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEE-----------------------
Q psy11349 234 ELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTV----------------------- 290 (360)
Q Consensus 234 ~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~----------------------- 290 (360)
+.|+|.+ +..++++.+.+ +++.|+|| +|++|+++.........++..+
T Consensus 259 ~~LtG~~-----d~eea~~~L~~-~~~~VVVT---lG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (434)
T PRK15074 259 EALTGES-----DPLLASDKALD-WVDLVLCT---AGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKKD 329 (434)
T ss_pred HHHhCCC-----CHHHHHHHHHc-CCCEEEEE---ECCCCEEEEecccccccCceeeeccccccccccchhcccchhccc
Confidence 9999852 44456666664 57899999 9999998753211000001111
Q ss_pred ---------EEEec---ccCCc-ccCchHHHHHHHHHHHHcCCC--------------------CHHHHHHHHHHHHHHH
Q psy11349 291 ---------SINIP---QFDAS-FTGTGDLFAALMLAYITRTNH--------------------NVKESLERTIATIQSV 337 (360)
Q Consensus 291 ---------~~~~~---~v~~~-t~GaGD~f~a~~~a~L~~~g~--------------------~l~~A~~~A~a~~~~~ 337 (360)
+++++ +++++ |+||||+|+|+|+++|.+ |+ ++.+|+++|+.+++.+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~v 408 (434)
T PRK15074 330 CQNPLRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITA-NSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEV 408 (434)
T ss_pred cccccccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHC-CCcccccccccccccccccccCCHHHHHHHHHHHHHHH
Confidence 45555 55666 999999999999999999 97 8999999999999999
Q ss_pred HHHH
Q psy11349 338 LERT 341 (360)
Q Consensus 338 l~~t 341 (360)
+++-
T Consensus 409 i~~~ 412 (434)
T PRK15074 409 LNQH 412 (434)
T ss_pred Hhhc
Confidence 8753
No 60
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=2.3e-16 Score=146.20 Aligned_cols=240 Identities=18% Similarity=0.148 Sum_probs=159.5
Q ss_pred EEEceecceeeechHHHHHHHHHHHhhcccccccccccceeeecccccc-cccccCCchhhhhcCeeeeeeeeeee----
Q psy11349 52 INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTVQF---- 126 (360)
Q Consensus 52 ~~~p~~~~~f~G~gd~~~~~l~~~~~~~~~~~~~~~~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~~~---- 126 (360)
+++|....+..|++|+.. ++.++..+.||++.++|++|+|+..+ +++.+.+++++ +.|.+.+.+.+..-
T Consensus 1 ig~~~~~~~~~~~~~~~~-----~~~~r~~~~HKg~~G~vliigG~~~y~GA~~laa~aAl-~~GaglV~v~~~~~~~~~ 74 (284)
T COG0063 1 IGIPKEAELLVGPADLIA-----WLPPRDPDSHKGDYGRVLIIGGSRGYTGAPVLAALAAL-RAGAGLVSLASPPEAASA 74 (284)
T ss_pred CCcchHhhhcCCHHHhhc-----cCCCCCccccCCCCCeEEEEcCCCCCCCHHHHHHHHHH-HhCCCeEEEecchhhhhh
Confidence 357888888899998654 35778899999999999999999888 99999988898 66998888776531
Q ss_pred --cCCCCC--CccccccCCHHHHHHHHHHhhhCCCCccCEEEEeeeC--CHHHHHHHHHHHHHHHhcCCCceEEEccccc
Q psy11349 127 --SNHSGY--GHLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCR--SPQLLSKIGELVKELKKANPTLMYVCDPVMG 200 (360)
Q Consensus 127 --s~~~~~--~~~~g~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~ 200 (360)
+..|+. ..+..... ....... .++|++.+|+.. .++..+.+.+++.... .|+|+|+-
T Consensus 75 ~~s~~Pe~mv~~~~~~~~-----~~~~~~~-----~~~~avviGpGlG~~~~~~~~~~~~l~~~~-----~p~ViDAD-- 137 (284)
T COG0063 75 LKSYLPELMVIEVEGKKL-----LEERELV-----ERADAVVIGPGLGRDAEGQEALKELLSSDL-----KPLVLDAD-- 137 (284)
T ss_pred HhhcCcceeEeecccchh-----hHHhhhh-----ccCCEEEECCCCCCCHHHHHHHHHHHhccC-----CCEEEeCc--
Confidence 111211 11111111 1111111 268999998663 5555566666655432 58999982
Q ss_pred cCCCCCCCcCcHHHHH--Hhhc-ccceEEeCCHHHHHhccCCCCCC-HHHHHHHHHHHHhcCCCEEEEeccccCCCceEE
Q psy11349 201 DNGRMYVPEEVLPIYA--NELL-SVADVICPNQFEAELLTKIPIKD-KASLLKTINVLHDRGIKTVVISSSELGPEKHLL 276 (360)
Q Consensus 201 ~~g~~~~~~~~~~~~~--~~ll-~~~diitpN~~E~~~L~g~~~~~-~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~ 276 (360)
.+..+. ..+. ....++|||..|+++|++.+..+ ..+..++++++.++....|++||. ..
T Consensus 138 ----------aL~~la~~~~~~~~~~~VlTPH~gEf~rL~g~~~~~~~~~r~~~a~~~a~~~~~vvVLKG~-------~t 200 (284)
T COG0063 138 ----------ALNLLAELPDLLDERKVVLTPHPGEFARLLGTEVDEIEVDRLEAARELAAKYGAVVVLKGA-------VT 200 (284)
T ss_pred ----------HHHHHHhCcccccCCcEEECCCHHHHHHhcCCcccccccchHHHHHHHHHHcCCEEEEeCC-------CC
Confidence 222111 0111 23389999999999999965533 356788899999888899999953 22
Q ss_pred EEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHH
Q psy11349 277 GVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYITRTN--HNVKESLERTIATIQSVLE 339 (360)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~~~g--~~l~~A~~~A~a~~~~~l~ 339 (360)
++.. . +...+++....+.+ +-|+||+++|.+.+.|+| + .+++.|+ +..|+++..-
T Consensus 201 vI~~-~----~g~~~~n~~G~~~ma~GGtGDvLaGii~alLAq-~~~~~~~Aa~--~g~~~h~~ag 258 (284)
T COG0063 201 VIAD-P----DGEVFVNPTGNPGMATGGTGDVLAGIIGALLAQ-GPADPLEAAA--AGAWLHGRAG 258 (284)
T ss_pred EEEc-C----CCcEEEcCCCCHHhccCcchHHHHHHHHHHHhC-CCCCHHHHHH--HHHHHHHHHH
Confidence 3322 2 44556777777778 569999999999999999 7 3334444 4455555443
No 61
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.69 E-value=7.1e-16 Score=142.81 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=113.0
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccC
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTK 238 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g 238 (360)
++++++++.... .+.+.++++.+++.+ +++++||..++ . . +.+ ..+++++|++.+|+.|..
T Consensus 112 ~~~~v~~~~~~~---~~~~~~~~~~a~~~g--~~v~~D~~~~~-----~-~---~~~-~~~~~~~d~~~~~~~~~~---- 172 (264)
T cd01940 112 QFDLVHTGIYSH---EGHLEKALQALVGAG--ALISFDFSDRW-----D-D---DYL-QLVCPYVDFAFFSASDLS---- 172 (264)
T ss_pred cCCEEEEccccc---HHHHHHHHHHHHHcC--CEEEEcCcccC-----C-H---HHH-HhhcccCCEEEechhhcC----
Confidence 578887665432 345677788888766 89999996432 1 1 112 367899999999987752
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHH
Q psy11349 239 IPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYIT 317 (360)
Q Consensus 239 ~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~ 317 (360)
.++..++++.+.+.+++.|++| +|++|+++.. + ++.++++.++++.+ |+||||+|.|+|+++++
T Consensus 173 -----~~~~~~~~~~l~~~~~~~vvvT---~G~~G~~~~~---~----~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~ 237 (264)
T cd01940 173 -----DEEVKAKLKEAVSRGAKLVIVT---RGEDGAIAYD---G----AVFYSVAPRPVEVVDTLGAGDSFIAGFLLSLL 237 (264)
T ss_pred -----cchHHHHHHHHHHcCCCEEEEE---ECCCCeEEEe---C----CeEEecCCcCCCCCCCCCchHHHHHHHHHHHH
Confidence 1355667888888899999999 9999987653 3 56777787777777 99999999999999999
Q ss_pred cCCCC-HHHHHHHHHHHHHHHHH
Q psy11349 318 RTNHN-VKESLERTIATIQSVLE 339 (360)
Q Consensus 318 ~~g~~-l~~A~~~A~a~~~~~l~ 339 (360)
+ |++ +++|+++|++++...++
T Consensus 238 ~-g~~~~~~al~~a~~~aa~~~~ 259 (264)
T cd01940 238 A-GGTAIAEAMRQGAQFAAKTCG 259 (264)
T ss_pred h-CCchHHHHHHHHHHHHHHHhc
Confidence 9 999 99999999998766654
No 62
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.68 E-value=2.6e-15 Score=150.75 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=112.7
Q ss_pred ccCEEEE-eeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhcc
Q psy11349 159 DYTHVLT-GYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLT 237 (360)
Q Consensus 159 ~~d~i~~-G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~ 237 (360)
+++++++ ++... ..+.+.++++.+++.+ +++++||.... + ..++.+|+++||..|++.|+
T Consensus 143 ~~~~v~is~~~~~--~~~~~~~~~~~~k~~g--~~vv~Dp~~~~----~-----------~~~~~~dil~pN~~Ea~~l~ 203 (473)
T PRK11316 143 SIGALVLSDYAKG--ALASVQAMIQLARKAG--VPVLIDPKGTD----F-----------ERYRGATLLTPNLSEFEAVV 203 (473)
T ss_pred cCCEEEEecCCcc--chhHHHHHHHHHHhcC--CeEEEeCCCCC----c-----------cccCCCeEECcCHHHHHHHh
Confidence 5777665 33221 1345667777787766 89999995321 1 23468999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHH-hcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHH
Q psy11349 238 KIPIKDKASLLKTINVLH-DRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAY 315 (360)
Q Consensus 238 g~~~~~~~d~~~aa~~l~-~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~ 315 (360)
|.. .+.++..+++++++ +.|++.|+|| +|++|++++.. + +..++++.++++.. |+||||+|+|+|+++
T Consensus 204 g~~-~~~~~~~~~~~~l~~~~g~~~vvVT---~G~~G~~~~~~--~----~~~~~~~~~~v~vvDttGAGDaF~aa~~~~ 273 (473)
T PRK11316 204 GKC-KDEAELVEKGMKLIADYDLSALLVT---RSEQGMTLLQP--G----KAPLHLPTQAREVYDVTGAGDTVISVLAAA 273 (473)
T ss_pred CCC-CCHHHHHHHHHHHHHhcCCCEEEEE---ecCCCcEEEec--C----CceEEecCcCCCCCCCCCCcHHHHHHHHHH
Confidence 952 34566666776665 5789999999 88999765431 1 23467787777777 999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHH
Q psy11349 316 ITRTNHNVKESLERTIATIQSVLE 339 (360)
Q Consensus 316 L~~~g~~l~~A~~~A~a~~~~~l~ 339 (360)
|++ |+++++|+++|++++..+++
T Consensus 274 l~~-g~~~~~al~~A~a~Aa~~v~ 296 (473)
T PRK11316 274 LAA-GNSLEEACALANAAAGVVVG 296 (473)
T ss_pred HHc-CCCHHHHHHHHHHHHHhhcc
Confidence 999 99999999999987765553
No 63
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.68 E-value=2e-15 Score=150.55 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=114.2
Q ss_pred ccCEEEEeeeC--CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCC-cCcHHHHHHhhcccceEEeCCHHHHHh
Q psy11349 159 DYTHVLTGYCR--SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVP-EEVLPIYANELLSVADVICPNQFEAEL 235 (360)
Q Consensus 159 ~~d~i~~G~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~-~~~~~~~~~~ll~~~diitpN~~E~~~ 235 (360)
+++++.++... ++...+.+.++++.+++.| ++|++||+++.. +|-. ++..+.+ ..+++++|++++|+.|++.
T Consensus 266 ~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G--~~VsfDpN~R~~--LW~~~~~~~~~i-~~~l~~aDIl~~SeeEa~~ 340 (496)
T PLN02543 266 EARMFHFNSEVLTSPSMQSTLFRAIELSKKFG--GLIFFDLNLPLP--LWRSRDETRELI-KKAWNEADIIEVSRQELEF 340 (496)
T ss_pred CCceEEECChhhcCchHHHHHHHHHHHHHHCC--CEEEEeCCCCcc--ccCCHHHHHHHH-HHHHHhCCEEEecHHHHHH
Confidence 57778776543 3444577888889898887 899999987753 3422 2333444 4778999999999999999
Q ss_pred ccCCCCC------CHH------------------HHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEE
Q psy11349 236 LTKIPIK------DKA------------------SLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS 291 (360)
Q Consensus 236 L~g~~~~------~~~------------------d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~ 291 (360)
|+|.+.. +.+ +. +.++.+.+.|.+.|+|| +|++|++++..... +....
T Consensus 341 Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~VVVT---~G~~Ga~~~t~~~~----g~v~~ 412 (496)
T PLN02543 341 LLDEDYYERKRNYPPQYYAESFEQTKNWRDYYHYTP-EEIAPLWHDGLKLLLVT---DGTLRIHYYTPKFD----GVVVG 412 (496)
T ss_pred HhCCCcccccccccchhhhhhhhhhhcccccccCCH-HHHHHHHHCCCCEEEEE---cCCCcEEEEECCCc----ccccc
Confidence 9986411 111 11 23456667789999999 99999877541100 11100
Q ss_pred EE---ecccCCcccCchHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHHHH
Q psy11349 292 IN---IPQFDASFTGTGDLFAALMLAYITR------TNHNVKESLERTIATIQSVLE 339 (360)
Q Consensus 292 ~~---~~~v~~~t~GaGD~f~a~~~a~L~~------~g~~l~~A~~~A~a~~~~~l~ 339 (360)
.. .+...+.||||||+|.|+|+++|++ .+.++++|+++|+++++.++.
T Consensus 413 ~~~~~v~~~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt 469 (496)
T PLN02543 413 TEDVLITPFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQW 469 (496)
T ss_pred cccccCCCCCcCCCchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHc
Confidence 00 1111234999999999999999983 157899999999998655443
No 64
>PLN02548 adenosine kinase
Probab=99.67 E-value=1.4e-15 Score=145.66 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=111.0
Q ss_pred ccCEEEE-eeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhcc
Q psy11349 159 DYTHVLT-GYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLT 237 (360)
Q Consensus 159 ~~d~i~~-G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~ 237 (360)
..+++++ |+... ...+.+.++++.+++++ .++++|+. . ..|. +...+.+ +.+++++|+++||+.|++.|+
T Consensus 148 ~~~~v~~~g~~~~-~~~~~~~~~~~~a~~~g--~~~~~~~~--~--~~~~-~~~~~~l-~~~l~~~dil~~n~~E~~~l~ 218 (332)
T PLN02548 148 KAKFYYIAGFFLT-VSPESIMLVAEHAAANN--KTFMMNLS--A--PFIC-EFFKDQL-MEALPYVDFLFGNETEARTFA 218 (332)
T ss_pred hCCEEEEEEEEcc-CCHHHHHHHHHHHHHcC--CEEEEECC--C--hhHH-HHhHHHH-HHHHhhCCEEEecHHHHHHHh
Confidence 4676655 54332 12244566677777766 56666652 1 0121 1112233 467789999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc------CCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEec---ccCCc-ccCchHH
Q psy11349 238 KIPIKDKASLLKTINVLHDR------GIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIP---QFDAS-FTGTGDL 307 (360)
Q Consensus 238 g~~~~~~~d~~~aa~~l~~~------g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~---~v~~~-t~GaGD~ 307 (360)
|....+.++..++++.+.+. +++.|++| +|++|++++. + ++.++++.. .++.+ |+||||+
T Consensus 219 g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT---~G~~G~~~~~---~----~~~~~~pa~~~~~~~vvDttGAGDa 288 (332)
T PLN02548 219 KVQGWETEDVEEIALKISALPKASGTHKRTVVIT---QGADPTVVAE---D----GKVKEFPVIPLPKEKLVDTNGAGDA 288 (332)
T ss_pred CccCCCcccHHHHHHHHHHhhhhccccCCEEEEE---eCCCcEEEEE---C----CeEEEeccccCCcCccccCCCchHH
Confidence 86443323444444444331 57899999 9999987643 3 556666653 33455 9999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 308 FAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 308 f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
|.|+|+++|++ |+++++|+++|+++++.++++
T Consensus 289 F~ag~l~~l~~-g~~l~eal~~a~aaAa~~v~~ 320 (332)
T PLN02548 289 FVGGFLSQLVQ-GKDIEECVRAGNYAANVIIQR 320 (332)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999 999999999999998877765
No 65
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.9e-15 Score=143.45 Aligned_cols=156 Identities=24% Similarity=0.243 Sum_probs=113.4
Q ss_pred cCEEEEeeeC-CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccC
Q psy11349 160 YTHVLTGYCR-SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTK 238 (360)
Q Consensus 160 ~d~i~~G~l~-~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g 238 (360)
.+.+.++.+. .... +.+.+.++.+++.+ .++++|++++.. .| . .+.+ ..+++++|++++|+.|++.|+|
T Consensus 130 ~~~~~~~~~~l~~~~-~~~~~~~~~a~~~g--~~v~~d~~~~~~--~~-~---~~~~-~~~l~~~d~~~~n~~E~~~l~g 199 (311)
T COG0524 130 ADVLHISGIQLEIPP-EALLAALELAKAAG--VTVSFDLNPRPA--LW-D---RELL-EELLALADILFPNEEEAELLTG 199 (311)
T ss_pred cCeeeEEEeecCCCh-HHHHHHHHHHHHcC--CeEEEecCCCcc--cc-c---hhhH-HHHHhhCCEEeCCHHHHHHHhC
Confidence 5555544442 2211 67778888888877 788999977653 11 1 2223 4788999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCce--EEEEEecccCCc-ccCchHHHHHHHHHH
Q psy11349 239 IPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKT--TVSINIPQFDAS-FTGTGDLFAALMLAY 315 (360)
Q Consensus 239 ~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~--~~~~~~~~v~~~-t~GaGD~f~a~~~a~ 315 (360)
. . ++..++.+.++..+.+.+++| +|++|++++.. + ++ ....+.++++++ |+||||+|.|+|+++
T Consensus 200 ~-~---~~~~~~~~~~~~~~~~~vvvt---~G~~Ga~~~~~--~----~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~ 266 (311)
T COG0524 200 L-E---EDAEAAAALLLAKGVKTVVVT---LGAEGAVVFTG--G----GEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAG 266 (311)
T ss_pred C-C---ccHHHHHHHHhhcCCCEEEEE---eCCCcEEEEeC--C----CceeeccCCCCccccccCCCchHHHHHHHHHH
Confidence 6 1 233333466777899999999 99999887642 1 22 222235666666 999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHH
Q psy11349 316 ITRTNHNVKESLERTIATIQSVLE 339 (360)
Q Consensus 316 L~~~g~~l~~A~~~A~a~~~~~l~ 339 (360)
+++ |+++++|+++|++.++.+++
T Consensus 267 ~~~-g~~~~~a~~~a~a~aa~~~~ 289 (311)
T COG0524 267 LLE-GKSLEEALRFANAAAALAVT 289 (311)
T ss_pred HHc-CCCHHHHHHHHHHHhhhhhc
Confidence 999 99999999999987655554
No 66
>PRK10565 putative carbohydrate kinase; Provisional
Probab=99.66 E-value=2.8e-15 Score=150.75 Aligned_cols=226 Identities=13% Similarity=0.063 Sum_probs=147.7
Q ss_pred HHhhcccccccccccceeeecccccc-cccccCCchhhhhcCeeeeeeeeeeecCCCCCCcccc----ccCCHHHHHHHH
Q psy11349 75 YITRTNHNVKESLERTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKG----KVITEQDFDELI 149 (360)
Q Consensus 75 ~~~~~~~~~~~~~~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~~~~~~g----~~l~~~~l~~ll 149 (360)
++.+++.+.||+..+++++|+|+..+ +++.++++++| +.|.+.+.+.++. +..+-.....+ ..+..+++++++
T Consensus 241 ~lp~r~~~shKg~~G~vliigGs~~~~GA~~Laa~aAl-r~GaGlv~~~~~~-~~~~~~~~~~Pe~~~~~~~~~~~~~~~ 318 (508)
T PRK10565 241 WLKPRRPTSHKGDHGRLLIIGGDHGTAGAIRMAGEAAL-RSGAGLVRVLTRS-ENIAPLLTARPELMVHELTPDSLEESL 318 (508)
T ss_pred hcCCCCccCCCCCCCeEEEEECCCCCccHHHHHHHHHH-HhCCCeEEEEeCh-hhHHHHhhcCceeEEecCCHhHHHHHh
Confidence 34677788999999999999999888 99999999999 5699888776542 11110100001 011223344443
Q ss_pred HHhhhCCCCccCEEEEeeeCC-HHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHh-hcccceEEe
Q psy11349 150 EGLKMNDLMDYTHVLTGYCRS-PQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANE-LLSVADVIC 227 (360)
Q Consensus 150 ~~~~~~~~~~~d~i~~G~l~~-~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~-ll~~~diit 227 (360)
+ .+|++.+|+... .+.. .++++.+++.+ .|+|+||.- +..+... ......+||
T Consensus 319 ---~-----~~~a~viGpGlg~~~~~---~~~~~~~~~~~--~P~VLDAda------------L~ll~~~~~~~~~~VLT 373 (508)
T PRK10565 319 ---E-----WADVVVIGPGLGQQEWG---KKALQKVENFR--KPMLWDADA------------LNLLAINPDKRHNRVIT 373 (508)
T ss_pred ---h-----cCCEEEEeCCCCCCHHH---HHHHHHHHhcC--CCEEEEchH------------HHHHhhCccccCCeEEC
Confidence 2 478899988842 2222 22334444434 799999932 2222100 011257999
Q ss_pred CCHHHHHhccCCCCCCH-HHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCch
Q psy11349 228 PNQFEAELLTKIPIKDK-ASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTG 305 (360)
Q Consensus 228 pN~~E~~~L~g~~~~~~-~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaG 305 (360)
||..|+++|++...... .+..++++++.++....|++||.+ .++.+ + ++..+++....+.+ +.|+|
T Consensus 374 Ph~gE~~rL~~~~~~~v~~~~~~~a~~~a~~~~~~vvlKG~~-------~iI~~-~----~~~~~~~~~G~~~ma~~GsG 441 (508)
T PRK10565 374 PHPGEAARLLGCSVAEIESDRLLSARRLVKRYGGVVVLKGAG-------TVIAA-E----PDALAIIDVGNAGMASGGMG 441 (508)
T ss_pred CCHHHHHHHhCCChhhhhhhHHHHHHHHHHHhCCEEEEeCCC-------cEEEc-C----CceEEEECCCCCCCCCCChH
Confidence 99999999998654332 256678888888777788999542 22222 2 34556677777777 78999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 306 DLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 306 D~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
|+++|.++++|++ +.++.+|+..|...-..+-+.
T Consensus 442 DvLaGiIaalla~-g~~~~~Aa~~a~~lhg~Ag~~ 475 (508)
T PRK10565 442 DVLSGIIGALLGQ-KLSPYDAACAGCVAHGAAADV 475 (508)
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999888887666554344443
No 67
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.64 E-value=6.5e-15 Score=137.51 Aligned_cols=152 Identities=23% Similarity=0.283 Sum_probs=113.1
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccC
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTK 238 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g 238 (360)
++++++++.+. + +...++++.+++. .++++||.. .|. ....+.+ +++++++|+++||+.|++.|+|
T Consensus 114 ~~~~v~~~~~~-~---~~~~~~~~~~~~~---~~v~~D~~~-----~~~-~~~~~~~-~~~l~~~d~~~~n~~E~~~l~g 179 (277)
T cd01946 114 DSEFVFLGNIA-P---ELQREVLEQVKDP---KLVVMDTMN-----FWI-SIKPEKL-KKVLAKVDVVIINDGEARQLTG 179 (277)
T ss_pred cCCEEEECCCC-H---HHHHHHHHHHHhC---CEEEEccHH-----Hhh-hhhHHHH-HHHhccCCEEeCCHHHHHHHhC
Confidence 57888887664 2 2334556666542 579999832 121 1223334 4678999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccC-Cc-ccCchHHHHHHHHHHH
Q psy11349 239 IPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFD-AS-FTGTGDLFAALMLAYI 316 (360)
Q Consensus 239 ~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~-~~-t~GaGD~f~a~~~a~L 316 (360)
. ++..++++.|.+.|++.|++| +|.+|++++. + ++.++.+.++++ .. |+||||+|+|+|+++|
T Consensus 180 ~-----~~~~~~~~~l~~~g~~~vvvt---~G~~G~~~~~---~----~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l 244 (277)
T cd01946 180 A-----ANLVKAARLILAMGPKALIIK---RGEYGALLFT---D----DGYFAAPAYPLESVFDPTGAGDTFAGGFIGYL 244 (277)
T ss_pred C-----chHHHHHHHHHHcCCCEEEEe---cCCCcEEEEE---C----CceEEcCCcccCccCCCCCchHHHHHHHHHHH
Confidence 5 367788888988999999999 8999987543 3 556677777765 55 9999999999999999
Q ss_pred HcCC-----CCHHHHHHHHHHHHHHHHHH
Q psy11349 317 TRTN-----HNVKESLERTIATIQSVLER 340 (360)
Q Consensus 317 ~~~g-----~~l~~A~~~A~a~~~~~l~~ 340 (360)
++ + .++++|+++|++.++..+++
T Consensus 245 ~~-~~~~~~~~~~~a~~~a~~~aa~~~~~ 272 (277)
T cd01946 245 AS-QKDTSEANMRRAIIYGSAMASFCVED 272 (277)
T ss_pred Hh-CCCcchhhHHHHHHHhHHHHhhhhhh
Confidence 98 7 46889998888877655543
No 68
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.64 E-value=3.3e-14 Score=131.86 Aligned_cols=162 Identities=19% Similarity=0.115 Sum_probs=112.8
Q ss_pred EEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCC
Q psy11349 162 HVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPI 241 (360)
Q Consensus 162 ~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~ 241 (360)
++.+|++ +++..+.+...++.+++.+ +|+|+||+..... .+ ..+..+.+.+. ++.++||||..|+..|+|.+.
T Consensus 59 vi~~G~l-~~~~~~~i~~~~~~a~~~~--~pvVlDpv~~~~~-~~-~~~~~~~ll~~--~~~~vItPN~~E~~~L~g~~~ 131 (263)
T PRK09355 59 VINIGTL-TEERIEAMLAAGKIANEAG--KPVVLDPVGVGAT-SY-RTEFALELLAE--VKPAVIRGNASEIAALAGEAA 131 (263)
T ss_pred EEeCCCC-CHHHHHHHHHHHHHHHhcC--CCEEECCcccCcc-hh-hHHHHHHHHHh--cCCcEecCCHHHHHHHhCCCc
Confidence 4455655 5555666777777677665 7999999875421 11 12222222211 368999999999999998642
Q ss_pred C--------CHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc--ccCchHHHHHH
Q psy11349 242 K--------DKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS--FTGTGDLFAAL 311 (360)
Q Consensus 242 ~--------~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~--t~GaGD~f~a~ 311 (360)
. +.+++.++++++.+++...|++||.+ +++.. + ++.+.++. ..+.+ .+|+||+|+|+
T Consensus 132 ~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~-------d~I~~-~----~~~~~~~~-g~~~~~~v~GtGc~L~~~ 198 (263)
T PRK09355 132 ETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEV-------DYITD-G----ERVVSVHN-GHPLMTKVTGTGCLLSAV 198 (263)
T ss_pred ccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCC-------cEEEe-C----CEEEEEeC-CCcccCCcccccHHHHHH
Confidence 1 24578889999998877889999653 22222 2 44455542 22223 58999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy11349 312 MLAYITRTNHNVKESLERTIATIQSVLERTAQS 344 (360)
Q Consensus 312 ~~a~L~~~g~~l~~A~~~A~a~~~~~l~~t~~~ 344 (360)
++++|++ |.++.+|+..|..+...+-+.+.+.
T Consensus 199 iaa~lA~-g~~~~~A~~~A~~~~~~a~~~a~~~ 230 (263)
T PRK09355 199 VAAFAAV-EKDYLEAAAAACAVYGIAGELAAER 230 (263)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 9999999999999998888777654
No 69
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.63 E-value=6.3e-15 Score=129.90 Aligned_cols=138 Identities=23% Similarity=0.258 Sum_probs=102.0
Q ss_pred cCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCC
Q psy11349 160 YTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKI 239 (360)
Q Consensus 160 ~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~ 239 (360)
.|+++++..... .+.+.++++.+++.+ +++++||...... +..++ + .++++++|+++||..|++.|++.
T Consensus 58 ~~~v~i~~~~~~--~~~~~~~~~~~~~~~--~~v~~D~~~~~~~--~~~~~----~-~~~~~~~dvl~~n~~E~~~l~~~ 126 (196)
T cd00287 58 ADAVVISGLSPA--PEAVLDALEEARRRG--VPVVLDPGPRAVR--LDGEE----L-EKLLPGVDILTPNEEEAEALTGR 126 (196)
T ss_pred ccEEEEecccCc--HHHHHHHHHHHHHcC--CeEEEeCCccccc--cccch----H-HHHHhhCCEECCCHHHHHHHhCC
Confidence 355665554332 345667777777766 8999999765421 11111 2 36778999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHH
Q psy11349 240 PIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYIT 317 (360)
Q Consensus 240 ~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~ 317 (360)
+..+.++..++++.+.+.+++.|++| +|++|+++... + +..++++.++.+.. |+||||+|+|+|++++.
T Consensus 127 ~~~~~~~~~~~~~~l~~~g~~~vvvt---~G~~g~~~~~~--~----~~~~~~~~~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 127 RDLEVKEAAEAAALLLSKGPKVVIVT---LGEKGAIVATR--G----GTEVHVPAFPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred CCCChHHHHHHHHHHHhcCCCEEEEE---ECCCccEEEec--C----CceEEcCCccCCcccCCCchHHHHHHHHHHhC
Confidence 76666677888999999999999999 88889876431 2 45667776666666 99999999999999873
No 70
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.62 E-value=1.4e-14 Score=138.69 Aligned_cols=165 Identities=17% Similarity=0.137 Sum_probs=113.4
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHh------cCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHH
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKK------ANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFE 232 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~------~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E 232 (360)
.++.+.++.... ...+...++++.+++ .+ ..+++||.... + .+...+.+ ..+++++|+++||+.|
T Consensus 120 ~a~~~hl~~~~~-~~~~~~~~~~~~a~~~~~d~~~g--~~~~~d~~~~~----~-~~~~~~~l-~~~l~~~dil~~n~~E 190 (328)
T cd01943 120 RSSCIHLICSPE-RCASIVDDIINLFKLLKGNSPTR--PKIVWEPLPDS----C-DPENLEDL-LQALPRVDVFSPNLEE 190 (328)
T ss_pred CCCeEEEECCHH-HHHHHHHHHHHHHHhhccccCCc--cEEEEecCCcc----c-ChhhHHHH-HHHhccCCEECCCHHH
Confidence 466666533221 122566677777776 44 67889985221 0 01122334 4788999999999999
Q ss_pred HHhccCCCCCCHHHHH--HH------HHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEeccc---CCc-
Q psy11349 233 AELLTKIPIKDKASLL--KT------INVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQF---DAS- 300 (360)
Q Consensus 233 ~~~L~g~~~~~~~d~~--~a------a~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v---~~~- 300 (360)
++.|+|....+.+... .+ ...+...+.+.|+|| +|++|++++... + +..++++.+++ +.+
T Consensus 191 a~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt---~G~~Ga~~~~~~-~----~~~~~~p~~~v~~~~vvD 262 (328)
T cd01943 191 AARLLGLPTSEPSSDEEKEAVLQALLFSGILQDPGGGVVLR---CGKLGCYVGSAD-S----GPELWLPAYHTKSTKVVD 262 (328)
T ss_pred HHHHhCCCCCCccchhhhhhhHHHHHHHhhhccCCCEEEEE---eCCCCCEEEecC-C----CceEecCCccCCCCcccC
Confidence 9999997543221111 11 112245688999999 999998765310 1 45667777766 666
Q ss_pred ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q psy11349 301 FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERT 341 (360)
Q Consensus 301 t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~t 341 (360)
|+||||+|.|+|++++++ |+++++|+++|++++..++++-
T Consensus 263 ttGAGDaF~agfl~~l~~-g~~~~~al~~a~a~Aa~~v~~~ 302 (328)
T cd01943 263 PTGGGNSFLGGFAAGLAL-TKSIDEACIYGSVAASFAIEQV 302 (328)
T ss_pred CCCchHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999 9999999999999987777653
No 71
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.60 E-value=2.6e-14 Score=133.24 Aligned_cols=145 Identities=24% Similarity=0.247 Sum_probs=106.3
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHH---Hh
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEA---EL 235 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~---~~ 235 (360)
..+++.+.... .+.++++.+++.+ +++++||..... .| .+ +.+ +++++++|+++||+.|+ +.
T Consensus 126 ~~~~~~~~~~~------~~~~~~~~~~~~g--~~v~~D~~~~~~--~~-~~---~~~-~~~l~~~dil~~n~~E~~~l~~ 190 (279)
T cd01942 126 LADIVHLSSGP------GLIELARELAAGG--ITVSFDPGQELP--RL-SG---EEL-EEILERADILFVNDYEAELLKE 190 (279)
T ss_pred ccCEEEeCCch------HHHHHHHHHHHcC--CeEEEcchhhhh--hc-cH---HHH-HHHHhhCCEEecCHHHHHHHHh
Confidence 56777654332 3456667777666 899999965321 11 11 223 46778999999999999 55
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEec-ccCCc-ccCchHHHHHHHH
Q psy11349 236 LTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIP-QFDAS-FTGTGDLFAALML 313 (360)
Q Consensus 236 L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~-~v~~~-t~GaGD~f~a~~~ 313 (360)
+++.. +... ..+.+.|++| +|++|++++. + ++.++++++ +++.+ |+||||+|+|+|+
T Consensus 191 ~~~~~-----~~~~------~~~~~~vvvt---~G~~G~~~~~---~----~~~~~~~~~~~~~vvDttGAGDaf~a~~i 249 (279)
T cd01942 191 RTGLS-----EAEL------ASGVRVVVVT---LGPKGAIVFE---D----GEEVEVPAVPAVKVVDTTGAGDAFRAGFL 249 (279)
T ss_pred hcCCC-----hHHH------hcCCCEEEEE---ECCCceEEEE---C----CceEEccCcCcCCCcCCCCchHHHHHHHH
Confidence 66642 1111 1688999999 9999987643 3 566777775 67777 9999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 314 AYITRTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 314 a~L~~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
++|++ |.++++|+++|++++...+++
T Consensus 250 ~~l~~-g~~l~~al~~a~~~Aa~~~~~ 275 (279)
T cd01942 250 YGLLR-GYDLEESLRLGNLAASLKVER 275 (279)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHHHcc
Confidence 99999 999999999999998777654
No 72
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.60 E-value=4.6e-14 Score=130.57 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=106.9
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccC
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTK 238 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g 238 (360)
+.++++++.... ..++++.+++.+ +++++||..... . + +...+++++|++.+|..+
T Consensus 113 ~~~~v~~~~~~~------~~~~~~~~~~~~--~~v~~D~~~~~~------~---~-~~~~~~~~~d~~~~~~~~------ 168 (260)
T PRK09813 113 QYDIVHAAIWGH------AEDAFPQLHAAG--KLTAFDFSDKWD------S---P-LWQTLVPHLDYAFASAPQ------ 168 (260)
T ss_pred hCCEEEEeccch------HHHHHHHHHHcC--CeEEEEcCCCcc------H---H-HHHHhCCceeEEEecCCc------
Confidence 467777653221 234556666666 899999954321 1 1 124678999999987542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHH
Q psy11349 239 IPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYIT 317 (360)
Q Consensus 239 ~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~ 317 (360)
...++.++++.+.+.|++.|+|| +|++|+++.. + ++.++.++++++.+ |+||||+|+|+|++++.
T Consensus 169 ----~~~~~~~~~~~~~~~g~~~viit---~G~~Ga~~~~---~----~~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~ 234 (260)
T PRK09813 169 ----EDEFLRLKMKAIVARGAGVVIVT---LGENGSIAWD---G----AQFWRQAPEPVTVVDTMGAGDSFIAGFLCGWL 234 (260)
T ss_pred ----chHHHHHHHHHHHHcCCCEEEEE---ECCCceEEEE---C----CEEEecCCcccCCCCCCCchHHHHHHHHHHHH
Confidence 12456778888888899999999 9999988653 3 56677777777776 99999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 318 RTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 318 ~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
+ |+++++|+++|++++...+++
T Consensus 235 ~-g~~~~~al~~a~~~aa~~~~~ 256 (260)
T PRK09813 235 A-GMTLPQAMAQGTACAAKTIQY 256 (260)
T ss_pred c-CCCHHHHHHHHHHHHHHHHhc
Confidence 9 999999999999988766654
No 73
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.58 E-value=3.4e-14 Score=131.64 Aligned_cols=140 Identities=13% Similarity=0.113 Sum_probs=104.2
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccC
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTK 238 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g 238 (360)
..+.++++.... ..++++.+++.+ .+++|+..... .+.+ .++++++|++++|+.|++.+++
T Consensus 121 ~~~~~~~~~~~~------~~~~~~~a~~~~---~~~~d~~~~~~---------~~~~-~~~~~~~d~~~~n~~e~~~l~~ 181 (265)
T cd01947 121 EGDGVFITAAAV------DKEAIRKCRETK---LVILQVTPRVR---------VDEL-NQALIPLDILIGSRLDPGELVV 181 (265)
T ss_pred cCCEEEEecccc------cHHHHHHHHHhC---CeEeccCcccc---------chhH-HHHhhhCCEEEeCHHHHHHhhh
Confidence 477776654321 134455566543 46788753321 1122 3677899999999999998874
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHH
Q psy11349 239 IPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYIT 317 (360)
Q Consensus 239 ~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~ 317 (360)
++.+.+.+.+.|++| +|++|++++. + ++.++++.++++.. |+||||+|.|+|++++.
T Consensus 182 ------------~~~~~~~~~~~viit---~G~~Ga~~~~---~----~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~ 239 (265)
T cd01947 182 ------------AEKIAGPFPRYLIVT---EGELGAILYP---G----GRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLL 239 (265)
T ss_pred ------------HHHHHhccCCEEEEE---eCCCCeEEEE---C----CeeEECCCCCCCCCCCCCchHHHHHHHHHHHH
Confidence 345667789999999 9999987653 3 56677777777776 99999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q psy11349 318 RTNHNVKESLERTIATIQSVLER 340 (360)
Q Consensus 318 ~~g~~l~~A~~~A~a~~~~~l~~ 340 (360)
+ |+++++|+++|++++...+++
T Consensus 240 ~-g~~~~~al~~a~~~Aa~~v~~ 261 (265)
T cd01947 240 K-GWSIEEALELGAQCGAICVSH 261 (265)
T ss_pred c-CCCHHHHHHHHHHHHHHHHhc
Confidence 9 999999999999988777653
No 74
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.58 E-value=2.7e-14 Score=131.48 Aligned_cols=146 Identities=19% Similarity=0.200 Sum_probs=105.8
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccC
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTK 238 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g 238 (360)
++|+++++.++.. ....+.+. . .++++||..... .+... +.+..++++++|+++||+.|++.+
T Consensus 107 ~~~~~~~~~~~~~----~~~~~~~~----~--~~v~~D~~~~~~--~~~~~---~~~~~~~l~~~di~~~n~~E~~~~-- 169 (254)
T cd01937 107 TAEIVILGPVPEE----ISPSLFRK----F--AFISLDAQGFLR--RANQE---KLIKCVILKLHDVLKLSRVEAEVI-- 169 (254)
T ss_pred cccEEEECCCcch----hcHHHHhh----h--hheeEcccccee--ecccc---chHHHhhcccCcEEEEcHHHHhhc--
Confidence 5788888766322 12222222 1 578999964321 12111 111247889999999999999983
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHH
Q psy11349 239 IPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYIT 317 (360)
Q Consensus 239 ~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~ 317 (360)
.+..++++.+.+.|++.|++| .|++|++++. + ++.++++.++++.. |+||||+|+|+|+++|.
T Consensus 170 ------~~~~~~~~~l~~~g~~~vvvt---~g~~g~~~~~---~----~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~ 233 (254)
T cd01937 170 ------STPTELARLIKETGVKEIIVT---DGEEGGYIFD---G----NGKYTIPASKKDVVDPTGAGDVFLAAFLYSRL 233 (254)
T ss_pred ------CCHHHHHHHHHHcCCCEEEEe---eCCcceEEEE---C----CccEEccccCceeccCCCchHHHHHHHHHHHH
Confidence 134567778888899999999 8888987653 3 45667777777666 99999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q psy11349 318 RTNHNVKESLERTIATIQSVL 338 (360)
Q Consensus 318 ~~g~~l~~A~~~A~a~~~~~l 338 (360)
+ |+++++|+++|++++...+
T Consensus 234 ~-g~~~~~a~~~a~~~aa~~i 253 (254)
T cd01937 234 S-GKDIKEAAEFAAAAAAKFI 253 (254)
T ss_pred c-CCCHHHHHHHHHHHHHHHh
Confidence 9 9999999999999876654
No 75
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=99.57 E-value=6.7e-15 Score=134.35 Aligned_cols=208 Identities=15% Similarity=0.148 Sum_probs=130.9
Q ss_pred eeeecccccc-cccccCCchhhhhcCeeeeeeeeee------ecCCCCCCccccccCC-HHHHHHHHHHhhhCCCCccCE
Q psy11349 91 IATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTVQ------FSNHSGYGHLKGKVIT-EQDFDELIEGLKMNDLMDYTH 162 (360)
Q Consensus 91 vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~~------~s~~~~~~~~~g~~l~-~~~l~~ll~~~~~~~~~~~d~ 162 (360)
|++|+|+..+ +++.+++++++ +.|.+.+.+.+.. .+..|+. .. ..+. .+++ .+.+.++ ++|+
T Consensus 1 VlvigGS~~~~GA~~Laa~aAl-r~GaGlV~~~~~~~~~~~~~~~~Pe~--m~-~~~~~~~~~-~~~~~~~-----~~~a 70 (242)
T PF01256_consen 1 VLVIGGSEGYPGAAILAARAAL-RSGAGLVTLATPESIAPVIASYSPEA--MV-SPLPSDEDV-EILELLE-----KADA 70 (242)
T ss_dssp EEEEE-BTSSHHHHHHHHHHHH-HTT-SEEEEEECGCCHHHHHHHTTTS--EE-EETTHCCHH-HHHHHHC-----H-SE
T ss_pred CEEEECCCCCCCHHHHHHHHHH-HHCCCcEEEEEcHHHHHHHHhCCcee--EE-ecccchhhh-hhHhhhc-----cCCE
Confidence 6789999888 99999999999 6699888877642 1111111 00 1111 1223 4555555 6899
Q ss_pred EEEeeeC--CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHH--hhcccceEEeCCHHHHHhccC
Q psy11349 163 VLTGYCR--SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYAN--ELLSVADVICPNQFEAELLTK 238 (360)
Q Consensus 163 i~~G~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~--~ll~~~diitpN~~E~~~L~g 238 (360)
+.+|+.. +++..+ +++.+.+.. .|+|+|. |.+..+.. .......++|||..|+++|++
T Consensus 71 v~iGPGlg~~~~~~~----~~~~~~~~~--~p~VlDA------------DaL~~l~~~~~~~~~~~IlTPH~gE~~rL~~ 132 (242)
T PF01256_consen 71 VVIGPGLGRDEETEE----LLEELLESD--KPLVLDA------------DALNLLAENPKKRNAPVILTPHPGEFARLLG 132 (242)
T ss_dssp EEE-TT-SSSHHHHH----HHHHHHHHC--STEEEEC------------HHHHCHHHCCCCSSSCEEEE-BHHHHHHHHT
T ss_pred EEeecCCCCchhhHH----HHHHHHhhc--ceEEEeh------------HHHHHHHhccccCCCCEEECCCHHHHHHHhC
Confidence 9999885 333333 333333333 5799997 33333322 134578999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHH
Q psy11349 239 IPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYIT 317 (360)
Q Consensus 239 ~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~ 317 (360)
......++..++++++.++....|++||.+ .++. . + ++..+++....+.+ +-|+||+++|.+++.++
T Consensus 133 ~~~~~~~~~~~~a~~~a~~~~~~vvLKG~~-----t~I~--~-p----~~~~~~n~~gn~~la~gGsGDvLaGii~~lla 200 (242)
T PF01256_consen 133 KSVEIQEDRIEAAREFAKEYGAVVVLKGAV-----TIIA--S-P----GGRVYVNPTGNPGLATGGSGDVLAGIIAGLLA 200 (242)
T ss_dssp TTCHHCCSHHHHHHHHHHHHTSEEEEESTS-----SEEE--E-E----TSEEEEE----GGGSSTTHHHHHHHHHHHHHH
T ss_pred CcccchhhHHHHHHHHHhhcCcEEEEeCCC-----cEEE--e-c----CcceeEeCCCCCCCCCCCcccHHHHHHHHHHH
Confidence 765323567788888888766789999642 1322 2 3 45566777777788 77999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy11349 318 RTNHNVKESLERTIATIQSVLE 339 (360)
Q Consensus 318 ~~g~~l~~A~~~A~a~~~~~l~ 339 (360)
| +.++.+|+..|...-..+-+
T Consensus 201 q-~~~~~~Aa~~av~lHg~Ag~ 221 (242)
T PF01256_consen 201 Q-GYDPFEAACLAVYLHGRAGD 221 (242)
T ss_dssp H-TSSHHHHHHHHHHHHHHHHH
T ss_pred c-cCCHHHHHHHHHHHHHHHHH
Confidence 9 99999998766554333333
No 76
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.56 E-value=4.7e-13 Score=125.81 Aligned_cols=165 Identities=14% Similarity=0.093 Sum_probs=108.4
Q ss_pred ccCCHHHHHHHHHHhhhCCCCccCEEEE-eeeCCHHHHHHHHHHHHHHHhcCC-----CceEEEccccccCCCCCCCcCc
Q psy11349 138 KVITEQDFDELIEGLKMNDLMDYTHVLT-GYCRSPQLLSKIGELVKELKKANP-----TLMYVCDPVMGDNGRMYVPEEV 211 (360)
Q Consensus 138 ~~l~~~~l~~ll~~~~~~~~~~~d~i~~-G~l~~~~~~~~i~~~l~~~~~~~~-----~~~vv~Dpv~~~~g~~~~~~~~ 211 (360)
..++.++++... ++ +++++++ |..+ +...++++.+++.+. .+++++|+....
T Consensus 113 ~~~~~~~~~~~~--~~-----~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~---------- 170 (290)
T cd01939 113 PEVTYDDFSKID--LT-----QYGWIHFEGRNP-----DETLRMMQHIEEHNNRRPEIRITISVEVEKPR---------- 170 (290)
T ss_pred CCCCHHHHhhhh--hc-----cCCEEEEeccCH-----HHHHHHHHHHHHhcCcCCCcceEEEEEeccCc----------
Confidence 345556565431 22 5787765 4332 223455555555432 157888874211
Q ss_pred HHHHHHhhcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEE
Q psy11349 212 LPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS 291 (360)
Q Consensus 212 ~~~~~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~ 291 (360)
+.+ .++++++|++++|+.|++.+ +.. +.++... .+.+...+++.|++| +|++|+++... + ++.++
T Consensus 171 -~~~-~~~l~~~di~~~n~~~~~~~-~~~--~~~~~~~-~~~~~~~~~~~vvvt---~G~~G~~~~~~--~----~~~~~ 235 (290)
T cd01939 171 -EEL-LELAAYCDVVFVSKDWAQSR-GYK--SPEECLR-GEGPRAKKAALLVCT---WGDQGAGALGP--D----GEYVH 235 (290)
T ss_pred -hhh-hhHHhhCCEEEEEhHHHHhc-CcC--CHHHHHH-hhhhhccCCcEEEEE---cccCCeEEEcC--C----CCEEE
Confidence 112 26778999999999998875 542 2333222 122233578899999 99999876542 2 44556
Q ss_pred EEeccc-CCc-ccCchHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHH
Q psy11349 292 INIPQF-DAS-FTGTGDLFAALMLAYITRTNHN-VKESLERTIATIQSVLER 340 (360)
Q Consensus 292 ~~~~~v-~~~-t~GaGD~f~a~~~a~L~~~g~~-l~~A~~~A~a~~~~~l~~ 340 (360)
++.++. +.+ |+||||+|.|+|++++++ |++ +++|+++|+++++..+++
T Consensus 236 ~~~~~~~~vvDt~GAGDsf~agfl~~l~~-g~~~~~~a~~~a~a~aa~~i~~ 286 (290)
T cd01939 236 SPAHKPIRVVDTLGAGDTFNAAVIYALNK-GPDDLSEALDFGNRVASQKCTG 286 (290)
T ss_pred ecCCCCCCcccCCCchHHHHHHHHHHHHc-CCccHHHHHHHHHHHHHHHHhh
Confidence 776553 455 999999999999999999 995 999999999998777654
No 77
>KOG2855|consensus
Probab=99.51 E-value=5.3e-13 Score=124.36 Aligned_cols=160 Identities=20% Similarity=0.129 Sum_probs=108.6
Q ss_pred ccCEEEEeeeC-CHHH-HHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhc
Q psy11349 159 DYTHVLTGYCR-SPQL-LSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELL 236 (360)
Q Consensus 159 ~~d~i~~G~l~-~~~~-~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L 236 (360)
++.+++.|... .+.. .......++.+++.+ ..+..||+.+..-.....+. ...+ ..++..+|+++....|++.+
T Consensus 139 ~ak~~~~q~ei~~~~~~~s~~~~~~~~~~~~g--~~i~~~pn~~l~l~~~~~~n-e~e~-~~i~~~adv~~~s~~e~~fl 214 (330)
T KOG2855|consen 139 EAKVFHCQSEILIEEPMRSLHIAAVKVAKNAG--PAIFYDPNLRLPLWDSLEEN-ESEI-ASIWNMADVIKVSSQELAFL 214 (330)
T ss_pred hccEEEEeeecCCcchhHHHHHhhhhhhhccc--ccccCCCCcccccccccccc-HHHH-HHHhhhhhcccccHHHHHHh
Confidence 46667766553 2222 222222244555544 35666887765422222222 2223 46788999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHH
Q psy11349 237 TKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAY 315 (360)
Q Consensus 237 ~g~~~~~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~ 315 (360)
+|.. .+++ . +|...+.+.|+|| +|++|+.++.... .. .+.+..+++++ ||||||+|.|+|+..
T Consensus 215 ~~~~---~~~~---~-~L~~~~~k~viVT---lG~kG~~y~tk~~-----~~-~~v~~~~V~~VDtTGAGDsFvgal~~~ 278 (330)
T KOG2855|consen 215 TGIE---DDKI---L-KLWHMKLKLVIVT---LGEKGCRYYTKDF-----KG-SHVPAFKVKAVDTTGAGDSFVGALAVQ 278 (330)
T ss_pred ccCc---cchH---H-HHhccCCCEEEEE---eCCCceEEEecCC-----CC-CCCCCcccccccCCCchHHHHHHHHHH
Confidence 9872 1222 3 6767777999999 9999998876432 23 56788888887 999999999999999
Q ss_pred HHcCC--CC---HHHHHHHHHHHHHHHHH
Q psy11349 316 ITRTN--HN---VKESLERTIATIQSVLE 339 (360)
Q Consensus 316 L~~~g--~~---l~~A~~~A~a~~~~~l~ 339 (360)
|.+ | .+ +++++++|++....+++
T Consensus 279 L~~-~~~~~~~~L~~~l~~A~a~~ai~v~ 306 (330)
T KOG2855|consen 279 LVR-GSLLPELSLEEALRFANACGAITVQ 306 (330)
T ss_pred Hhh-ccccchHHHHHHHHHHHHhhhHHhh
Confidence 999 9 66 89999999888655543
No 78
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=5.1e-13 Score=125.85 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=116.7
Q ss_pred HHHHHHHhhhCCCCccCEE-EEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccc
Q psy11349 145 FDELIEGLKMNDLMDYTHV-LTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVA 223 (360)
Q Consensus 145 l~~ll~~~~~~~~~~~d~i-~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~ 223 (360)
...+++.++.. +.+++++ ++-|.-. .+..+.++++.+|+.| +|+.+||- |..| .....+
T Consensus 130 ~~~ll~~~~~~-l~~~~~vVLSDY~KG--~L~~~q~~I~~ar~~~--~pVLvDPK----g~Df-----------~~Y~GA 189 (467)
T COG2870 130 ENKLLEKIKNA-LKSFDALVLSDYAKG--VLTNVQKMIDLAREAG--IPVLVDPK----GKDF-----------EKYRGA 189 (467)
T ss_pred HHHHHHHHHHH-hhcCCEEEEeccccc--cchhHHHHHHHHHHcC--CcEEECCC----Ccch-----------hhhCCC
Confidence 34444444321 1367855 5544421 1122566778888877 89999994 3333 334689
Q ss_pred eEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-c
Q psy11349 224 DVICPNQFEAELLTKIPIKDKASLLKTINVLHD-RGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-F 301 (360)
Q Consensus 224 diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~-~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t 301 (360)
.+||||..|++...|... +.+++.+.+++|.+ .+...+++| ++++|...+. . ++..++|+....+. .
T Consensus 190 tLiTPN~~E~~~~vg~~~-~e~el~~~g~kL~~~~~L~alLvT---RsE~GMtL~~---~----~~~~h~pt~AkEVyDV 258 (467)
T COG2870 190 TLITPNLKEFEEAVGKCK-SEEELEERGQKLKEELDLSALLVT---RSEKGMTLFQ---E----GKPLHFPARAKEVYDV 258 (467)
T ss_pred eecCCCHHHHHHHHcccc-cHHHHHHHHHHHHHhhCcceEEEE---eccCCceeec---C----Ccccccchhheeeeec
Confidence 999999999999999754 34677787888876 477899999 9999976653 2 44477777666666 8
Q ss_pred cCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy11349 302 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQ 335 (360)
Q Consensus 302 ~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~ 335 (360)
+||||+..|.++.+|+. |.++++||.+|++++.
T Consensus 259 TGAGDTVIa~la~~laa-G~s~~eAc~lAN~Aag 291 (467)
T COG2870 259 TGAGDTVIAVLAAALAA-GASLEEACELANAAAG 291 (467)
T ss_pred cCCCchHHHHHHHHHHc-CCCHHHHHHHhhhhcc
Confidence 99999999999999999 9999999999999854
No 79
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.44 E-value=2.9e-12 Score=122.80 Aligned_cols=134 Identities=17% Similarity=0.150 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHh-----cCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCCCHHHHHH
Q psy11349 175 SKIGELVKELKK-----ANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLK 249 (360)
Q Consensus 175 ~~i~~~l~~~~~-----~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~ 249 (360)
+....+++.++. ++ +.+++||+.... ..|-.++ +.+ ..+++++|+++||+.|++.+ +.+++
T Consensus 135 e~~~~~~~~a~~v~~D~~g--~~~~~Dp~~~~~-~~~~~~~--~~~-~~~L~~iDil~~ne~Ea~~l------~~~~~-- 200 (335)
T PLN02630 135 ETLERMVEICDVVVVDIQA--LIRVFDPVDGTV-KLVKLEE--TGF-YDMLPRIGFLKASSEEALFI------DVEEV-- 200 (335)
T ss_pred HHHHHHHHHhhhheeccCc--eEEecCCccccc-ccchhhH--HHH-HHHHHhCCEEEecHHHHhhc------CHHHH--
Confidence 445566666665 45 788999964210 1110011 112 46789999999999999987 11221
Q ss_pred HHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc-ccCchHHHHHHHHHHHHcCCCCHHHHHH
Q psy11349 250 TINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS-FTGTGDLFAALMLAYITRTNHNVKESLE 328 (360)
Q Consensus 250 aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-t~GaGD~f~a~~~a~L~~~g~~l~~A~~ 328 (360)
. +. ..|+|| +|++|++++. + ++.++++.++++.+ |+||||+|.|+|++++++ |+++++|++
T Consensus 201 -~----~~--~~vvvt---~G~~G~~~~~---~----~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~~-g~~~~~a~~ 262 (335)
T PLN02630 201 -R----QK--CCVIVT---NGKKGCRIYW---K----DGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQ-GLAVPDAAL 262 (335)
T ss_pred -c----cC--CEEEEE---ECCCceEEEE---C----CeeEEeCCCCCCCCCCCChHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 1 22 379999 9999987653 3 55677888888777 999999999999999999 999999999
Q ss_pred HHHHHHHHHHHH
Q psy11349 329 RTIATIQSVLER 340 (360)
Q Consensus 329 ~A~a~~~~~l~~ 340 (360)
+|++++...+++
T Consensus 263 ~A~a~aa~~v~~ 274 (335)
T PLN02630 263 LGNYFGSLAVEQ 274 (335)
T ss_pred HHHHHHHHHhCc
Confidence 999987666653
No 80
>KOG2599|consensus
Probab=99.42 E-value=1.3e-13 Score=123.35 Aligned_cols=87 Identities=31% Similarity=0.544 Sum_probs=74.3
Q ss_pred cceeceEEEEEEeeeecCCCC-ceEEEEecceeccCCCeeEEEEEEceecceeeechHHHHHHHHHHHhhcc--cccccc
Q psy11349 10 QEVIRTTLVVIATQILQRDPS-ALTCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTN--HNVKES 86 (360)
Q Consensus 10 ~~~~~~~~v~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~G~gd~~~~~l~~~~~~~~--~~~~~~ 86 (360)
|.+| |++|||||+.+.+.++ +|+|++|+ .++ ++|.+.||+++++|+|+||+|+|||++|+.+.+ .++.++
T Consensus 177 hq~~-v~~vVITS~~~~~~~g~~l~c~gs~-----~~~-~~f~~~ipki~~~FtGTGDLfsaLLla~~~~~~~~~~l~~a 249 (308)
T KOG2599|consen 177 HQKG-VKTVVITSFDLGEFTGETLRCIGSS-----CGS-ERFRYLIPKIDGVFTGTGDLFSALLLAWLHESPDNDDLSKA 249 (308)
T ss_pred HHhC-CCEEEEEeeeeCCCCCcEEEEEEec-----cCC-ceEEEEecccceEEecccHHHHHHHHHHHhcCCCcchHHHH
Confidence 4455 9999999999988644 99999998 333 899999999999999999999999999999887 778888
Q ss_pred cccceeeeccccccccc
Q psy11349 87 LERTIATIQSVLERTAQ 103 (360)
Q Consensus 87 ~~~~vl~I~~~~~~~~~ 103 (360)
.+..+.+++.....+..
T Consensus 250 ~e~~ls~~~~viqkT~~ 266 (308)
T KOG2599|consen 250 VEQVLSSVQAVIQKTLD 266 (308)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999988887666433
No 81
>KOG2854|consensus
Probab=99.40 E-value=1.3e-11 Score=114.03 Aligned_cols=161 Identities=17% Similarity=0.272 Sum_probs=105.1
Q ss_pred ccCEEE-EeeeC--CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHh
Q psy11349 159 DYTHVL-TGYCR--SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAEL 235 (360)
Q Consensus 159 ~~d~i~-~G~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~ 235 (360)
+..+++ .|++. +++ .+..+.+.+.+.++...+-++. .++.+-..+.+ .+.++++|+|..|+.|++.
T Consensus 159 ka~v~yv~Gffltv~p~---ai~~v~qh~~e~~r~~~lnlsa-------pfI~q~~~~~l-~~v~~y~DiifgNe~EA~a 227 (343)
T KOG2854|consen 159 KAKVFYVAGFFLTVSPD---AIRKVAQHAAENNRVFTLNLSA-------PFISQFFKDAL-DKVLPYADIIFGNEDEAAA 227 (343)
T ss_pred heeEEEEEEEEEEeChH---HHHHHHHHHHHhcchhheeccc-------hhHHHHHHHHH-HhhcCcceEEEcCHHHHHH
Confidence 355564 57664 344 4455555566555312333333 23333444555 4788999999999999999
Q ss_pred ccCCC-CCC--HHHHHHHHHHHHh---cCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCC---c-ccCch
Q psy11349 236 LTKIP-IKD--KASLLKTINVLHD---RGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDA---S-FTGTG 305 (360)
Q Consensus 236 L~g~~-~~~--~~d~~~aa~~l~~---~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~---~-t~GaG 305 (360)
+.... +.+ ..++......+-+ ...+.++|| .|.++.+... + ++...++..+++. + |+|||
T Consensus 228 f~~~~~~~t~dv~eia~~~~~~~k~~~~~~r~vvit---~g~~~~i~~~---~----~~v~~~~v~~~~~~~ivDtnGAG 297 (343)
T KOG2854|consen 228 FARAHGWETKDVKEIALKLSALPKVNGTRPRTVVIT---QGPDPVIVAE---D----GKVTAYPVLPLPVEEIVDTNGAG 297 (343)
T ss_pred HHHhhCCcccchHHHhhHhhccccccccccceEEEc---cCCCceEEec---C----CceEEeccccccceeeeeCCCch
Confidence 97432 222 2222222222222 245789999 8888876653 2 5566666655442 3 99999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q psy11349 306 DLFAALMLAYITRTNHNVKESLERTIATIQSVLERT 341 (360)
Q Consensus 306 D~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~t 341 (360)
|+|.++|++.|.+ |++++++++.+..+++.+|+..
T Consensus 298 DaFvgGFl~~l~q-g~~l~~cir~g~~aa~~vi~~~ 332 (343)
T KOG2854|consen 298 DAFVGGFLSQLVQ-GKSLEECIRAGSYAASHVIRRV 332 (343)
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHhhheeecc
Confidence 9999999999999 9999999999999888888753
No 82
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=99.34 E-value=1.9e-10 Score=103.40 Aligned_cols=166 Identities=19% Similarity=0.162 Sum_probs=118.5
Q ss_pred EEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcc--cceEEeCCHHHHHhccCC
Q psy11349 162 HVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLS--VADVICPNQFEAELLTKI 239 (360)
Q Consensus 162 ~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~--~~diitpN~~E~~~L~g~ 239 (360)
+|-+|.+ +.+..+.+...++.+++.+ .|+|+|||-... ..+...+..+++. +.++|+.|..|...|.|.
T Consensus 60 ~INIGTL-~~~~~~~m~~A~~~An~~~--~PvvLDPVgvgA------t~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag~ 130 (265)
T COG2145 60 LINIGTL-SAERIQAMRAAIKAANESG--KPVVLDPVGVGA------TKFRTKFALELLAEVKPAAIRGNASEIAALAGE 130 (265)
T ss_pred EEeeccC-ChHHHHHHHHHHHHHHhcC--CCEEecCccCCc------hHHHHHHHHHHHHhcCCcEEeccHHHHHHHhcc
Confidence 4456877 5566888899999999987 899999986532 1223333334554 479999999999999875
Q ss_pred CCC--------CHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc--ccCchHHHH
Q psy11349 240 PIK--------DKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS--FTGTGDLFA 309 (360)
Q Consensus 240 ~~~--------~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~--t~GaGD~f~ 309 (360)
... ..+++.++++.+.++....|++|| .+++..+ . .+.+.+.. ..+-+ .||+||.++
T Consensus 131 ~~~~kGVDa~~~~~~~~~~a~~~A~~~~~vvvvTG-------~vD~Isd-g----~~~~~i~n-G~pll~~ItGtGCllg 197 (265)
T COG2145 131 AGGGKGVDAGDGAADAIEAAKKAAQKYGTVVVVTG-------EVDYISD-G----TRVVVIHN-GSPLLGKITGTGCLLG 197 (265)
T ss_pred cccccccccccchhhHHHHHHHHHHHhCcEEEEEC-------CeeEEEc-C----CeEEEEEC-CCcHHhhhhccccHHH
Confidence 431 346788888888887668889993 4666532 2 34443332 33333 789999999
Q ss_pred HHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHhhC-CCCCC
Q psy11349 310 ALMLAYITRTNHN-VKESLERTIATIQSVLERTAQSF-PNKGS 350 (360)
Q Consensus 310 a~~~a~L~~~g~~-l~~A~~~A~a~~~~~l~~t~~~~-~~~~~ 350 (360)
|.++++++. ..+ +.+|...|..+...+-+.+.+.. ++.|+
T Consensus 198 av~aaF~av-~~d~~~~A~~~A~~~~~iAge~A~~~~~~gpGs 239 (265)
T COG2145 198 AVVAAFLAV-EKDPLLDAAAEACAVYGIAGELAAERANKGPGS 239 (265)
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 999999999 777 68888888888777878877765 44444
No 83
>KOG3974|consensus
Probab=99.28 E-value=2.3e-10 Score=102.13 Aligned_cols=211 Identities=17% Similarity=0.189 Sum_probs=125.8
Q ss_pred hcccccccccccceeeecccccc-cccccCCchhhhhcCeeeeeeeeee------ecCCCCCCccccccCCH-HHHHHHH
Q psy11349 78 RTNHNVKESLERTIATIQSVLER-TAQSFPNKGQYEVLGFEVDAINTVQ------FSNHSGYGHLKGKVITE-QDFDELI 149 (360)
Q Consensus 78 ~~~~~~~~~~~~~vl~I~~~~~~-~~~~~~~~~~l~~~G~~~~~i~t~~------~s~~~~~~~~~g~~l~~-~~l~~ll 149 (360)
....+-||++-++|.+|+|...| +++-|++.+++ ..|.|...+.+.- .+..|+. ..-+.+.. +..+.+-
T Consensus 20 ~L~~~kHKGq~GrvgViGGc~eYTGAPYFaa~sa~-~~GaDL~HiFCe~~Aa~vIKsYsPdL--IVHP~l~~~~av~~i~ 96 (306)
T KOG3974|consen 20 PLLSNKHKGQSGRVGVIGGCLEYTGAPYFAAISAL-RVGADLSHIFCEPEAAVVIKSYSPDL--IVHPVLDQENAVDIIE 96 (306)
T ss_pred CccCcccCCCccceEEEcccccccCccHHHHHHHH-HhccceeeeeechhHHHHHhhcCCce--eecccccCCchHhHHH
Confidence 33355689999999999999888 99999988888 7799988777641 1112210 00011111 1122221
Q ss_pred HHhhhCCCCccCEEEEeeeC--CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEe
Q psy11349 150 EGLKMNDLMDYTHVLTGYCR--SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVIC 227 (360)
Q Consensus 150 ~~~~~~~~~~~d~i~~G~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diit 227 (360)
..+. +.+++++|+.. ++.....+.++++.+++++ +|+|+|. +.+|+-++..+.+... ...-++|
T Consensus 97 k~L~-----RlhavVIGPGLGRdp~~~k~i~~iley~~~~d--vP~VIDa-----DGL~Lv~q~~e~l~~~--~~~viLT 162 (306)
T KOG3974|consen 97 KLLQ-----RLHAVVIGPGLGRDPAILKEIAKILEYLRGKD--VPLVIDA-----DGLWLVEQLPERLIGG--YPKVILT 162 (306)
T ss_pred HHHh-----heeEEEECCCCCCCHHHHHHHHHHHHHHhcCC--CcEEEcC-----CceEehhhchhhhhcc--CceeeeC
Confidence 2233 57889998874 6677788889999888754 9999997 3355444444322111 1347999
Q ss_pred CCHHHHHhccCCCCCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCcccCchH
Q psy11349 228 PNQFEAELLTKIPIKDKASLLKTINVLHD-RGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDASFTGTGD 306 (360)
Q Consensus 228 pN~~E~~~L~g~~~~~~~d~~~aa~~l~~-~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~t~GaGD 306 (360)
||.-|+++|++....+. +-...+..|.. .....|+-| |+... +.+.+ .+......+.-...--|-||
T Consensus 163 PNvvEFkRLcd~~l~~~-d~~~~~~~L~~~l~nv~vvqK----G~~D~---ils~~----~ev~~~s~eGs~kRcGGQGD 230 (306)
T KOG3974|consen 163 PNVVEFKRLCDAELDKV-DSHSQMQHLAAELMNVTVVQK----GESDK---ILSPD----SEVRVCSTEGSLKRCGGQGD 230 (306)
T ss_pred CcHHHHHHHHHHhhccc-cchHHHHHHHHHhcCeEEEEe----cCCce---eeCCC----CeeEEccCCCCccccCCCcc
Confidence 99999999998643221 11222333332 233445555 33332 22322 44444443333223559999
Q ss_pred HHHHHHHHHHH
Q psy11349 307 LFAALMLAYIT 317 (360)
Q Consensus 307 ~f~a~~~a~L~ 317 (360)
.++|.++.+++
T Consensus 231 iLaGsla~fl~ 241 (306)
T KOG3974|consen 231 ILAGSLATFLS 241 (306)
T ss_pred hhhhHHHHHHH
Confidence 99999887764
No 84
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=99.20 E-value=5.3e-10 Score=101.55 Aligned_cols=167 Identities=19% Similarity=0.135 Sum_probs=111.9
Q ss_pred cCEEEEeee-CCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhc--ccceEEeCCHHHHHhc
Q psy11349 160 YTHVLTGYC-RSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELL--SVADVICPNQFEAELL 236 (360)
Q Consensus 160 ~d~i~~G~l-~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll--~~~diitpN~~E~~~L 236 (360)
++++++-.. .+++..+.+...++.+++.+ +|+|+|||-... -.+...+..+++ .++++|+.|..|...|
T Consensus 50 a~al~iNiGTl~~~~~~~m~~A~~~A~~~~--~PvVLDPVgvGa------s~~R~~~~~~LL~~~~~~vIrGN~sEI~aL 121 (246)
T PF02110_consen 50 ADALVINIGTLTDERIEAMKKAAKAANELG--IPVVLDPVGVGA------SKFRTEFALELLNNYKPTVIRGNASEIAAL 121 (246)
T ss_dssp TSEEEEESTTSSHHHHHHHHHHHHHHHHTT----EEEE-TTBTT------BHHHHHHHHHHHCHS--SEEEEEHHHHHHH
T ss_pred cCEEEEECCCCCHhHHHHHHHHHHHHHHcC--CCEEEeCcccCC------cHHHHHHHHHHHHhCCCcEEEeCHHHHHHH
Confidence 565655333 26777899999999999877 899999985532 122333334566 4889999999999999
Q ss_pred cCCCCC--------CHHHHHHHHHHHHhcCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEecccCCc--ccCchH
Q psy11349 237 TKIPIK--------DKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDAS--FTGTGD 306 (360)
Q Consensus 237 ~g~~~~--------~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~--t~GaGD 306 (360)
.|.... +.++..+.++++.++....|++||. .++. ++. ...+.++. ..+.+ .||+||
T Consensus 122 ag~~~~~kGVDs~~~~~~~~~~a~~lA~k~~~vVvvTG~-------~D~I-sdg----~~~~~i~n-G~~~l~~itGtGC 188 (246)
T PF02110_consen 122 AGEDSKAKGVDSGDSDEDAIEAAKQLAQKYNCVVVVTGE-------VDYI-SDG----NRVYRIPN-GSPLLSKITGTGC 188 (246)
T ss_dssp HTCCCCSCSSSSSCGSHHHHHHHHHHHHHTTSEEEEESS-------SEEE-EES----SCEEEECS-SSGGGGGSTTHHH
T ss_pred hCcCCCCCCcCcCCcchHHHHHHHHHHHhcCCEEEEecC-------CcEE-ECC----CeEEEeCC-CChHhcceeccch
Confidence 986542 1244688899999888788999943 3444 212 34433332 33333 789999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy11349 307 LFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNK 348 (360)
Q Consensus 307 ~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~t~~~~~~~ 348 (360)
++.+.++++++. ..+...|...|..+...+-+.+.+...+.
T Consensus 189 ~lgaliaaf~av-~~d~~~aa~~a~~~~~~Age~A~~~~~gp 229 (246)
T PF02110_consen 189 MLGALIAAFLAV-AEDPLEAAVAAVALYGIAGELAAEKSNGP 229 (246)
T ss_dssp HHHHHHHHHHCC-CSSHHHHHHHHHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999988 77777777778887777777766544443
No 85
>KOG2947|consensus
Probab=98.69 E-value=5.3e-07 Score=80.15 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=98.5
Q ss_pred ccCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCC---CceEEEccccccCCCCCCCcCcHHH
Q psy11349 138 KVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANP---TLMYVCDPVMGDNGRMYVPEEVLPI 214 (360)
Q Consensus 138 ~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~---~~~vv~Dpv~~~~g~~~~~~~~~~~ 214 (360)
++++.++++++ ++. .+..|..---...++.+.+..+.+ .++..| ++.+.+|- +...++
T Consensus 118 p~vT~~dF~kv--dl~-----qy~WihfE~Rnp~etlkM~~~I~~-~N~r~pe~qrI~vSvd~-----------en~req 178 (308)
T KOG2947|consen 118 PDVTATDFEKV--DLT-----QYGWIHFEARNPSETLKMLQRIDA-HNTRQPEEQRIRVSVDV-----------ENPREQ 178 (308)
T ss_pred ccccHHHhhhc--ccc-----eeeeEEEecCChHHHHHHHHHHHH-hhcCCCccceEEEEEEe-----------cCcHHH
Confidence 45666666643 333 355555322224555555444443 232222 35566664 233344
Q ss_pred HHHhhcccceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhc----CCCEEEEeccccCCCceEEEEEeeeccCCceEE
Q psy11349 215 YANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDR----GIKTVVISSSELGPEKHLLGVASTVVGGSKTTV 290 (360)
Q Consensus 215 ~~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~----g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~ 290 (360)
.. .++..+|++....+=++.+.=+ +..++++.+..+ +.+.|+|-- .+++|+-... . + ++.+
T Consensus 179 ~~-~l~am~DyVf~sK~~a~~~gfk------s~rea~~~l~~r~~~~~pkpv~I~~--w~~eGA~~l~-a-d----g~yf 243 (308)
T KOG2947|consen 179 LF-QLFAMCDYVFVSKDVAKHLGFK------SPREACEGLYGRVPKGKPKPVLICP--WASEGAGALG-A-D----GKYF 243 (308)
T ss_pred HH-HHhhcccEEEEEHHHHhhhccC------CHHHHHHHHHhhcccCCCCcEEEec--cccccccccC-C-C----CCEE
Confidence 43 6788999999988777766322 345555555432 455566541 4455543222 1 3 7777
Q ss_pred EEEecccCC-c-ccCchHHHHHHHHHH-HHcCCCCHHHHHHHHHHHH
Q psy11349 291 SINIPQFDA-S-FTGTGDLFAALMLAY-ITRTNHNVKESLERTIATI 334 (360)
Q Consensus 291 ~~~~~~v~~-~-t~GaGD~f~a~~~a~-L~~~g~~l~~A~~~A~a~~ 334 (360)
+.++.+.+. + +.|+||+|+|+++++ |.+ +.++.||+++|+.++
T Consensus 244 ev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~-~r~l~eAvdfg~rva 289 (308)
T KOG2947|consen 244 EVDAFKPPKVVDTLGAGDTFNAGVIYALLKQ-GRSLAEAVDFGNRVA 289 (308)
T ss_pred ecCCCCCccceeeccCCCcchHHHHHHHHHh-hhhHHHHHHHHHHhh
Confidence 888776654 3 999999999999998 555 899999999999976
No 86
>KOG3009|consensus
Probab=97.91 E-value=8.6e-05 Score=71.79 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=95.0
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhc-c
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELL-T 237 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L-~ 237 (360)
+.+.|+. .+......+..+++ ++++. .+++|.|.-.+. ..+.++..+.--.+.++||..|+-.. .
T Consensus 425 ~a~~I~~---DsNiS~~~Ma~il~-ak~~k--~~V~fEPTd~~k--------~~K~fk~l~v~~i~~i~PN~~Ell~a~k 490 (614)
T KOG3009|consen 425 SADFILL---DSNISVPVMARILE-AKKHK--KQVWFEPTDIDK--------VKKVFKTLLVGAITAISPNANELLKAAK 490 (614)
T ss_pred cCCEEEE---cCCCCHHHHHHHHH-hhhcc--CceEecCCCchh--------hhhhhhhcceeeEEeeCCCHHHHHHHhh
Confidence 4777773 33334556777777 56544 789999964442 22222222233579999999998332 2
Q ss_pred CCCC-------CCHHHHHHHHHHHHh---cCCCEEEEeccccCCCceEEEEEeeeccCCceEEEEEe---cc-c-CCc-c
Q psy11349 238 KIPI-------KDKASLLKTINVLHD---RGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINI---PQ-F-DAS-F 301 (360)
Q Consensus 238 g~~~-------~~~~d~~~aa~~l~~---~g~~~Vlvtg~~~g~~g~~~~~~~~~~~~~~~~~~~~~---~~-v-~~~-t 301 (360)
+... .+.+...+.++.+.+ ..-...++| +.++|.+..+.... + ..++.. +. . +.+ .
T Consensus 491 ~~~v~~nps~~q~~~~~~~~~~~~~~k~~~~~s~~I~t---l~~~G~l~~yr~k~----g-~l~~~s~~p~~~~~n~vsv 562 (614)
T KOG3009|consen 491 LCHVSVNPSVIQTADGVLELIEKEKTKLLLNTSIFIVT---LANKGSLVVYRNKL----G-QLEFQSLPPPLQMNNVVSV 562 (614)
T ss_pred cCceeeChhhhccchHHHHHHHHHHHHhhcccceEEEE---eccCceEEEecCCC----C-CcccccCCCcccccceeEe
Confidence 2111 112333333333322 344567888 88999887664322 2 222222 21 2 223 5
Q ss_pred cCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy11349 302 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLE 339 (360)
Q Consensus 302 ~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~ 339 (360)
.|+||+|.+++.++++. +.++.++++-+.......++
T Consensus 563 sgaGdsf~~g~i~~l~~-~~~v~es~~gg~~~~ralls 599 (614)
T KOG3009|consen 563 SGAGDSFNSGVIAGLAH-NKTVVESLQGGQECARALLS 599 (614)
T ss_pred ccCCcccccceeehhhc-CcchHhhccccHHHHHHHHh
Confidence 59999999999999999 99999999888665544444
No 87
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=96.91 E-value=0.00078 Score=62.21 Aligned_cols=61 Identities=21% Similarity=0.166 Sum_probs=41.3
Q ss_pred eceEEEEEEeeeecCCCCceEEEEecceeccCCCeeEEEEEEceecceeeechHHHHHHHHHHHhhcc
Q psy11349 13 IRTTLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTN 80 (360)
Q Consensus 13 ~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~G~gd~~~~~l~~~~~~~~ 80 (360)
++.+.|+|||+...+.+.--+|+..... . ..+.+. |.++..|.|+||+|+|++++++.+..
T Consensus 171 ~gp~~vlVTS~~~~~~~~~~~~~~~~~~---~---~~~h~~-~~v~~~~~GtGDL~sallla~lL~g~ 231 (281)
T COG2240 171 DGPKIVLVTSLSRAGMSTGNFEMLGKSA---E---LAWHIS-PLVPFIPNGTGDLFSALLLARLLEGL 231 (281)
T ss_pred cCCCEEEEecccccCCCCceEEEeccch---h---hhhhhh-hcCCCCCCCchHHHHHHHHHHHHcCC
Confidence 5688999999998554433333332211 1 234454 77777799999999999999887633
No 88
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=96.32 E-value=0.0085 Score=54.99 Aligned_cols=59 Identities=27% Similarity=0.413 Sum_probs=45.0
Q ss_pred eceEEEEEEeeeecCCCCceEEEEecceeccCCCeeEEEEEEceec-ceeeechHHHHHHHHHHHhh
Q psy11349 13 IRTTLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFD-ASFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 13 ~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~f~G~gd~~~~~l~~~~~~ 78 (360)
...++|+||+...+++++.+.-+... ..+.+.+..|+++ ..|.|+||+|+|++++++.+
T Consensus 154 ~G~~~VvItg~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~ 213 (246)
T PF08543_consen 154 LGPKNVVITGGHLDGDEGIITDVLYD-------GGEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAK 213 (246)
T ss_dssp TS-SEEEEEEEEGGSSCEEEEEEEET-------TSEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHT
T ss_pred hCCceEEEeeeccccccccccceeee-------ccceeecceeEEcCCCCCCchhHHHHHHHHHHHc
Confidence 56789999999987666654333322 1256778889999 99999999999999999865
No 89
>PLN02978 pyridoxal kinase
Probab=95.32 E-value=0.019 Score=54.54 Aligned_cols=72 Identities=32% Similarity=0.439 Sum_probs=46.3
Q ss_pred eceEEEEEEeeeecCCCCceEEEEecceeccCC-CeeEEEEEEceecceeeechHHHHHHHHHHHhhccccccccccc
Q psy11349 13 IRTTLVVIATQILQRDPSALTCKEKELKLIQSG-SKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLER 89 (360)
Q Consensus 13 ~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~f~G~gd~~~~~l~~~~~~~~~~~~~~~~~ 89 (360)
....+|+|||+... +.+++..+... .++ ....+.+..|+++..|.|+||+|+|++++++.+.+.++.++.+.
T Consensus 184 ~g~~~VVITs~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~GtGD~fsA~laa~l~~g~~~l~~A~~~ 256 (308)
T PLN02978 184 AGPSKVVITSIDID---GKLLLVGSHRK--EKGARPEQFKIVIPKIPAYFTGTGDLMAALLLGWSHKYPDNLDKAAEL 256 (308)
T ss_pred hCCCEEEEEEecCC---CCEEEEEeccc--ccCCCCceEEEEccCCCCCCCCchHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 35678999998753 23444433211 011 12457889999999999999999999888876532344433333
No 90
>PTZ00344 pyridoxal kinase; Provisional
Probab=93.42 E-value=0.2 Score=47.27 Aligned_cols=62 Identities=31% Similarity=0.520 Sum_probs=41.6
Q ss_pred ceEEEEEEeeeecCCCCce--EEEEecceeccCCCeeEEEEEEceecceeeechHHHHHHHHHHHhh
Q psy11349 14 RTTLVVIATQILQRDPSAL--TCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 14 ~~~~v~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~G~gd~~~~~l~~~~~~ 78 (360)
++.+|+||+.++..+...+ ++..... .......+.+..|+++..+.|+||.|+|.+++++.+
T Consensus 175 g~~~VvVTg~~~~~~g~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~GaGD~f~A~~~a~l~~ 238 (296)
T PTZ00344 175 GIPVVVITSFREDEDPTHLRFLLSCRDK---DTKNNKRFTGKVPYIEGRYTGTGDLFAALLLAFSHQ 238 (296)
T ss_pred CCCEEEEEeecCCCCCCcEEEEEEeccc---cCCCceeEEEeccccCCCCCCchHHHHHHHHHHHhc
Confidence 6788999998865443223 2222110 011134577889999999999999999999877754
No 91
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=92.48 E-value=0.26 Score=46.06 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=41.6
Q ss_pred eceEEEEEEeeeecCCCCceEEEEecceeccCCCeeEEEEEEceecceeeechHHHHHHHHHHHhh
Q psy11349 13 IRTTLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 13 ~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~G~gd~~~~~l~~~~~~ 78 (360)
...++|+||+.....+++.+.+...+ .+ ..+.+..|.+...++|+||.|+|.+++.+.+
T Consensus 187 ~g~~~VvIT~g~~g~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~GaGD~faa~~~a~l~~ 245 (281)
T PRK08176 187 DTLKWVVITSAAGNEENQEMQVVVVT-----AD--SVNVISHPRVDTDLKGTGDLFCAELVSGLLK 245 (281)
T ss_pred cCCCEEEEeeccCCCCCCcEEEEEEe-----CC--ceEEEecCccCCCCCChhHHHHHHHHHHHhc
Confidence 46788999988754334555444322 11 2346677888899999999999999988854
No 92
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=90.96 E-value=2 Score=42.76 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhhCCCCccC-EEEEeeeCC----------HHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcC
Q psy11349 142 EQDFDELIEGLKMNDLMDYT-HVLTGYCRS----------PQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEE 210 (360)
Q Consensus 142 ~~~l~~ll~~~~~~~~~~~d-~i~~G~l~~----------~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~ 210 (360)
.+++...++.+. .++| +|++|+=.- .+..+...+.++.+++.++++++-+.-. .+.+.+
T Consensus 197 ~e~f~~~l~e~~----~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~~i~~l~~~~~~i~iH~E~A------s~~~~~ 266 (453)
T PRK14039 197 NPAFEQYALEHA----GEMDGALISGFHLLLETYPDGSTYREKLEDSLAQLKWWKSKNEKLRIHAELG------HFASKE 266 (453)
T ss_pred cHHHHHHHHhhc----cCCCEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHHHhcCCCceEEEEec------CcccHH
Confidence 455666665553 1478 456665421 2334444555555655667788877642 244467
Q ss_pred cHHHHHHhhcccceEEeCCHHHHHhccCC---CC-----CCHHHHHHHHHHHHhc-CCCEEEEe
Q psy11349 211 VLPIYANELLSVADVICPNQFEAELLTKI---PI-----KDKASLLKTINVLHDR-GIKTVVIS 265 (360)
Q Consensus 211 ~~~~~~~~ll~~~diitpN~~E~~~L~g~---~~-----~~~~d~~~aa~~l~~~-g~~~Vlvt 265 (360)
..+.+.+.+++.+|.+=.|+.|+..+... .. .+.++..+++.+|.+. |.+.+.|-
T Consensus 267 i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~l~~~~~le~l~vH 330 (453)
T PRK14039 267 IANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIGEAACQLASESGLQRLIIH 330 (453)
T ss_pred HHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 77777778999999999999999988654 21 2467888899888874 77766653
No 93
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=86.42 E-value=7.9 Score=38.77 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhhCCCCccC-EEEEeeeC--C--------HHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcC
Q psy11349 142 EQDFDELIEGLKMNDLMDYT-HVLTGYCR--S--------PQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEE 210 (360)
Q Consensus 142 ~~~l~~ll~~~~~~~~~~~d-~i~~G~l~--~--------~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~ 210 (360)
.+++...++.+.. .+| +|++|+-. . .+..+.+.+.++.+++.+|++++-+.-. .+.+.+
T Consensus 209 ~eef~~~L~ei~~----~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~A------s~~~~~ 278 (463)
T PRK03979 209 KDELKEFLPEIGK----MVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFA------SIQNRE 278 (463)
T ss_pred cHHHHHHHHhhcc----CCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEec------cccCHH
Confidence 4557666666431 478 45667542 1 1235555666666767777888887642 244457
Q ss_pred cHHHHHHhhcccceEEeCCHHHHHhcc---CCC--------CCCHHHHHHHHHHHHhc-CCCEEEE
Q psy11349 211 VLPIYANELLSVADVICPNQFEAELLT---KIP--------IKDKASLLKTINVLHDR-GIKTVVI 264 (360)
Q Consensus 211 ~~~~~~~~ll~~~diitpN~~E~~~L~---g~~--------~~~~~d~~~aa~~l~~~-g~~~Vlv 264 (360)
..+.+.+.+++.+|.+=.|+.|+..+. |.. ..+.++..+++..|++. +.+.|.|
T Consensus 279 ir~~i~~~ilp~vDSlGmNE~ELa~l~~~lg~~~l~~~i~~~~~i~~v~~a~~~L~~~~~leri~v 344 (463)
T PRK03979 279 IRKKIITYILPHVDSVGMDETEIANILNVLGYEELSERILKESRIEDVIEGAKILLDELNLERVQV 344 (463)
T ss_pred HHHHHHHhhccccccccCCHHHHHHHHHHhcCcchhhhhhccccHHHHHHHHHHHHHHcCCCEEEE
Confidence 777777788999999999999998765 221 12357888888888774 6555443
No 94
>PRK05756 pyridoxamine kinase; Validated
Probab=85.46 E-value=1.7 Score=40.60 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=38.8
Q ss_pred eceEEEEEEeeeecC-CCCceEEEEecceeccCCCeeEEEEEEceecc--eeeechHHHHHHHHHHHhh
Q psy11349 13 IRTTLVVIATQILQR-DPSALTCKEKELKLIQSGSKTTVSINIPQFDA--SFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 13 ~~~~~v~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~f~G~gd~~~~~l~~~~~~ 78 (360)
..+.+|+||+....+ +++...+...+ .+ ..+.+..|+++. .++|.||.|+|.+++.+.+
T Consensus 173 ~g~~~Vvvt~g~~~~~~~~~~g~~~~~-----~~--~~~~~~~~~~~~~v~~~GaGD~f~a~~~a~l~~ 234 (286)
T PRK05756 173 RGPKIVLVTSLARAGYPADRFEMLLVT-----AD--GAWHISRPLVDFMRQPVGVGDLTSALFLARLLQ 234 (286)
T ss_pred hCCCEEEEeccccCCCCCCcEEEEEEE-----CC--ceEEEecCccCCCCCCCChHHHHHHHHHHHHhc
Confidence 467889999776421 12233332221 11 245667788887 8999999999999988854
No 95
>PRK07105 pyridoxamine kinase; Validated
Probab=82.80 E-value=3.2 Score=38.68 Aligned_cols=59 Identities=14% Similarity=0.307 Sum_probs=37.5
Q ss_pred eceEEEEEEeeeecCCCCceEEEEecceeccCCCeeEEEEEEceecceeeechHHHHHHHHHHHhh
Q psy11349 13 IRTTLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 13 ~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~G~gd~~~~~l~~~~~~ 78 (360)
..+.+|+||+....+ +..-+...+ .+....+.+..|.++..++|.||.|+|.+++.+.+
T Consensus 176 ~g~~~Vvvt~~~~~~--g~~g~~~~~-----~~~~~~~~~~~~~~~~~~~GaGD~f~aa~~~~l~~ 234 (284)
T PRK07105 176 LGPKIVIITSVPFED--GKIGVAYYD-----RATDRFWKVFCKYIPAHYPGTGDIFTSVITGSLLQ 234 (284)
T ss_pred cCCCEEEEcCeeeCC--CeEEEEEEe-----CCCCeEEEEeecccCCCcCChhHHHHHHHHHHHhC
Confidence 356789999865432 222222211 11123456667888888999999999999887754
No 96
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=82.19 E-value=14 Score=36.77 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhhCCCCccC-EEEEeeeC-CH---------HHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcC
Q psy11349 142 EQDFDELIEGLKMNDLMDYT-HVLTGYCR-SP---------QLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEE 210 (360)
Q Consensus 142 ~~~l~~ll~~~~~~~~~~~d-~i~~G~l~-~~---------~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~ 210 (360)
.++++..+.++.. .+| +|++|+-. .. +..+...+.++.+++ ++++++-+.-. .+.+.+
T Consensus 196 ~~~l~~~~~~i~~----~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~-~~~i~iH~E~A------s~~~~~ 264 (446)
T TIGR02045 196 KDQLRKFLPEIGE----PVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKK-NKDLKIHVEFA------SIQNRE 264 (446)
T ss_pred cHHHHHhhhhhhh----cccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhh-CCCCeEEEEec------ccccHH
Confidence 3557777666642 477 55667542 11 234555566666644 46788877642 244457
Q ss_pred cHHHHHHhhcccceEEeCCHHHHHhcc---CCC--------CCCHHHHHHHHHHHHhc-CCCEEEE
Q psy11349 211 VLPIYANELLSVADVICPNQFEAELLT---KIP--------IKDKASLLKTINVLHDR-GIKTVVI 264 (360)
Q Consensus 211 ~~~~~~~~ll~~~diitpN~~E~~~L~---g~~--------~~~~~d~~~aa~~l~~~-g~~~Vlv 264 (360)
+.+.+.+.+++.+|.+=.|+.|+..+. |.. ..+.++..+++..|++. +.+.|.+
T Consensus 265 l~~~i~~~ilp~vDSlGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~l~~~~~leri~v 330 (446)
T TIGR02045 265 IRKKVVTNIFPHVDSVGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAKILLDELNLEVVQV 330 (446)
T ss_pred HHHHHHHhhccccccccCCHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHHHHHHHcCCCEEEE
Confidence 777776789999999999999998876 321 12356888888888764 6655544
No 97
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=74.31 E-value=6.6 Score=36.04 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=35.2
Q ss_pred ceEEEEEEeeeecCCCCceEEEEecceeccCCCeeEEEEEEceecc-eeeechHHHHHHHHHHHhh
Q psy11349 14 RTTLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDA-SFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 14 ~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~f~G~gd~~~~~l~~~~~~ 78 (360)
...+|+||+....+. ......... .+ ..+.+..|+++. .++|.||.|+|.+++.+.+
T Consensus 170 g~~~Vvit~g~~~~g-~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~GaGD~f~a~l~~~l~~ 227 (266)
T PRK06427 170 GCKAVLIKGGHLLDG-EESVDWLFD-----GE--GEERFSAPRIPTKNTHGTGCTLSAAIAAELAK 227 (266)
T ss_pred CCCEEEEcCCCCCCC-CceeEEEEe-----CC--cEEEEEeeeECCCCCCChHHHHHHHHHHHHHC
Confidence 567899997663221 111111111 11 235666677776 7899999999999888764
No 98
>PRK12616 pyridoxal kinase; Reviewed
Probab=71.86 E-value=9.3 Score=35.37 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=36.4
Q ss_pred eceEEEEEEeeeecCCCCceEEEEecceeccCCCeeEEEEEEceeccee-eechHHHHHHHHHHHhh
Q psy11349 13 IRTTLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDASF-TGTGDLFAALMLAYITR 78 (360)
Q Consensus 13 ~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f-~G~gd~~~~~l~~~~~~ 78 (360)
....+|+||......+ +....+... +. ..+.+..|+++..+ +|+||.|+|.+++.+.+
T Consensus 170 ~G~~~VvVt~G~~g~~-~~~~~~~~~------~~-~~~~~~~~~~~~~~t~GaGD~fsaalaa~l~~ 228 (270)
T PRK12616 170 LGAQYVVITGGGKLKH-EKAVDVLYD------GE-TAEVLESEMIDTPYTHGAGCTFSAAVTAELAK 228 (270)
T ss_pred cCCCEEEEeCCCCCcC-CceEEEEEE------CC-eEEEEEeeeeCCCCCCcHHHHHHHHHHHHHHC
Confidence 4567899997653211 111111111 11 33567788888877 89999999999888764
No 99
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=69.69 E-value=12 Score=33.98 Aligned_cols=57 Identities=32% Similarity=0.461 Sum_probs=36.3
Q ss_pred ceEEEEEEeeeecCCCCceEEEEecceeccCCCeeEEEEEEceec--ceeeechHHHHHHHHHHHhh
Q psy11349 14 RTTLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFD--ASFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 14 ~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~f~G~gd~~~~~l~~~~~~ 78 (360)
.+.+|++|..... +++...+.... .+ ..+.+..|.++ ...+|.||.|+|-++..+.+
T Consensus 172 g~~~Vvit~g~~~-~~~~~g~~~~~-----~~--~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~l~~ 230 (254)
T cd01173 172 GPKTVVVTSVELA-DDDRIEMLGST-----AT--EAWLVQRPKIPFPAYFNGTGDLFAALLLARLLK 230 (254)
T ss_pred CCCEEEEEeeccC-CCCcEEEEEEe-----cC--ccEEEEeeccCCCCCcCChHHHHHHHHHHHHHc
Confidence 4678888866643 22333333322 11 23455667776 78899999999999887754
No 100
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=68.02 E-value=10 Score=34.09 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=34.1
Q ss_pred eceEEEEEEeeeecCCCCceEEEEecceeccCCCeeEEEEEEceec-ceeeechHHHHHHHHHHHhh
Q psy11349 13 IRTTLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFD-ASFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 13 ~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~f~G~gd~~~~~l~~~~~~ 78 (360)
...++|+||.....+ +........ .+ +.+.+..|+.+ ..++|.||.|++.+++.+.+
T Consensus 163 ~g~~~Vvit~g~~~~--~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~ 220 (242)
T cd01169 163 LGAKAVLIKGGHLPG--DEAVDVLYD-----GG--GFFEFESPRIDTKNTHGTGCTLSSAIAANLAK 220 (242)
T ss_pred cCCCEEEEecCCCCC--CceeEEEEE-----CC--cEEEEecceeCCCCCCChHHHHHHHHHHHHHC
Confidence 356788888655321 222111111 11 23445555664 78899999999999888764
No 101
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=65.96 E-value=13 Score=37.83 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=36.8
Q ss_pred eceEEEEEEeeeecCCCCceEEEEecceeccCCCeeEEEEEEceec-ceeeechHHHHHHHHHHHhh
Q psy11349 13 IRTTLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFD-ASFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 13 ~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~f~G~gd~~~~~l~~~~~~ 78 (360)
.++.+|+||+.....+++....+... .+....+.+..|+++ ..++|+||.|+|.+++.+.+
T Consensus 396 ~G~~~VvVtgg~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~i~~~~~~GaGD~fsaaiaa~la~ 457 (504)
T PTZ00347 396 YGSRYVLVKGGHDLIDPEACRDVLYD-----REKDRFYEFTANRIATINTHGTGCTLASAISSFLAR 457 (504)
T ss_pred cCCCEEEEeCCCCCcCCCcceEEEEc-----CCCCeEEEEEeeeECCCCCCChHHHHHHHHHHHHhC
Confidence 46778999976632122222111111 111234566667776 56799999999999888764
No 102
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=65.91 E-value=43 Score=33.57 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhhCCCCccCE-EEEeeeC-CH----HHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHH
Q psy11349 142 EQDFDELIEGLKMNDLMDYTH-VLTGYCR-SP----QLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIY 215 (360)
Q Consensus 142 ~~~l~~ll~~~~~~~~~~~d~-i~~G~l~-~~----~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~ 215 (360)
.+++...++.+. .++|. |++|+-. .+ +..+.+.+.++.++. +++++=+.-. .+.+.++.+.+
T Consensus 211 ~eef~~~l~ei~----~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~--~~i~iH~EfA------s~~d~~~r~~i 278 (453)
T PRK14038 211 RPEFRERFEEIA----KKAELAIISGLQALTEENYREPFETVREHLKVLNE--RGIPAHLEFA------FTPDETVREEI 278 (453)
T ss_pred cHHHHHHHHhhc----cCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCc--CCceEEEEee------ccchHHHHHHH
Confidence 345655555533 15784 5666542 11 223333333333322 3466555532 23334566666
Q ss_pred HHhhcccceEEeCCHHHHHhccC---C----------CCCCHHHHHHHHHHHHhc-CCCEEEE
Q psy11349 216 ANELLSVADVICPNQFEAELLTK---I----------PIKDKASLLKTINVLHDR-GIKTVVI 264 (360)
Q Consensus 216 ~~~ll~~~diitpN~~E~~~L~g---~----------~~~~~~d~~~aa~~l~~~-g~~~Vlv 264 (360)
. .+++.+|-+=.|+.|+..+.. . ++.+.++..+++.+|++. |.+.+.+
T Consensus 279 ~-~ilp~vDSlGmNE~ELa~ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gleri~v 340 (453)
T PRK14038 279 L-GLLGKFYSVGLNEVELASIMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGVKRIHF 340 (453)
T ss_pred H-hhCccccccccCHHHHHHHHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5 588999999999999988764 1 112567888999988874 7666655
No 103
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=62.85 E-value=19 Score=36.04 Aligned_cols=84 Identities=23% Similarity=0.282 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhhCCCCccCEE-EEeeeC-C---------HHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCc
Q psy11349 143 QDFDELIEGLKMNDLMDYTHV-LTGYCR-S---------PQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEV 211 (360)
Q Consensus 143 ~~l~~ll~~~~~~~~~~~d~i-~~G~l~-~---------~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~ 211 (360)
+++.+.++++.. ++|.+ ++|+=. . .+..+.+.+.++.+++ ++++++-+.-. .+.+++.
T Consensus 197 e~f~~~l~~~~~----~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~-~~~~~iH~E~A------s~~d~~l 265 (444)
T PF04587_consen 197 EEFFEALEEIAF----KPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKS-NPDIPIHLELA------SFADEEL 265 (444)
T ss_dssp HHHHHSHHHHHT----T-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH--HTT-EEEEE----------SSHHH
T ss_pred HHHHHHHHhhcc----CCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccC-CCCCceEEEec------cccCHHH
Confidence 456555555221 48855 556432 1 2334555555566664 46688877642 3445677
Q ss_pred HHHHHHhhcccceEEeCCHHHHHhcc
Q psy11349 212 LPIYANELLSVADVICPNQFEAELLT 237 (360)
Q Consensus 212 ~~~~~~~ll~~~diitpN~~E~~~L~ 237 (360)
.+.+.+.++|++|.+=.|+.|+..|.
T Consensus 266 ~~~i~~~ilp~vDSlGmNEqEL~~l~ 291 (444)
T PF04587_consen 266 RKEILEKILPHVDSLGMNEQELANLL 291 (444)
T ss_dssp HHHHHHHHGGGSSEEEEEHHHHHHHH
T ss_pred HHHHHHHhhccccccccCHHHHHHHH
Confidence 77777889999999999999999874
No 104
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=58.10 E-value=1.4e+02 Score=26.67 Aligned_cols=73 Identities=14% Similarity=0.182 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccce-----EEeCCHHHHHhccCCCCCCHHHH
Q psy11349 173 LLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVAD-----VICPNQFEAELLTKIPIKDKASL 247 (360)
Q Consensus 173 ~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~d-----iitpN~~E~~~L~g~~~~~~~d~ 247 (360)
+.+.+.++++.+++.| +.+.+|.+. +...+.++ .+++.+| +--.+...-..++|.+ .+.+
T Consensus 52 q~~fl~~l~~~~k~~g--i~~~leTnG------~~~~~~~~----~l~~~~D~~l~DiK~~d~~~~~~~tG~~---~~~i 116 (213)
T PRK10076 52 QAEFATRFLQRLRLWG--VSCAIETAG------DAPASKLL----PLAKLCDEVLFDLKIMDATQARDVVKMN---LPRV 116 (213)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEECCC------CCCHHHHH----HHHHhcCEEEEeeccCCHHHHHHHHCCC---HHHH
Confidence 3456788889999887 889999842 22223332 4445554 4455666677888864 3566
Q ss_pred HHHHHHHHhcCCC
Q psy11349 248 LKTINVLHDRGIK 260 (360)
Q Consensus 248 ~~aa~~l~~~g~~ 260 (360)
.+.++.+.+.|..
T Consensus 117 l~nl~~l~~~g~~ 129 (213)
T PRK10076 117 LENLRLLVSEGVN 129 (213)
T ss_pred HHHHHHHHhCCCc
Confidence 6777888877654
No 105
>PRK12412 pyridoxal kinase; Reviewed
Probab=56.67 E-value=27 Score=32.23 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=35.2
Q ss_pred eceEEEEEEeeeecCCCCce-EEEEecceeccCCCeeEEEEEEceeccee-eechHHHHHHHHHHHhh
Q psy11349 13 IRTTLVVIATQILQRDPSAL-TCKEKELKLIQSGSKTTVSINIPQFDASF-TGTGDLFAALMLAYITR 78 (360)
Q Consensus 13 ~~~~~v~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~f-~G~gd~~~~~l~~~~~~ 78 (360)
....+|+||.-....++... +... +. ..+.+..|+++... +|.||.|++.+++.+.+
T Consensus 167 ~g~~~ViIt~G~~g~~~~~~~~~~~--------~~-~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l~~ 225 (268)
T PRK12412 167 LGAKYVLIKGGSKLGTETAIDVLYD--------GE-TFDLLESEKIDTTNTHGAGCTYSAAITAELAK 225 (268)
T ss_pred cCCCEEEEeccCCCCCCceEEEEEe--------CC-EEEEEEeCccCCCCCCchHHHHHHHHHHHHHC
Confidence 45678899866532211111 1111 11 23456777888776 69999999999888764
No 106
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=54.75 E-value=27 Score=31.70 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=22.7
Q ss_pred EEEEEceecceeeechHHHHHHHHHHHhh
Q psy11349 50 VSINIPQFDASFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 50 ~~~~~p~~~~~f~G~gd~~~~~l~~~~~~ 78 (360)
+....|......+|.||.|++.++..+.+
T Consensus 193 ~~~~~~~~~~~~~GaGDaf~a~~~~~l~~ 221 (253)
T PRK12413 193 VILESPVLEKNNIGAGCTFASSIASQLVK 221 (253)
T ss_pred EEEeecccCCCCCChHHHHHHHHHHHHHc
Confidence 44556767777899999999988887754
No 107
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=51.94 E-value=32 Score=31.92 Aligned_cols=30 Identities=40% Similarity=0.442 Sum_probs=21.6
Q ss_pred EEEEEEceec--ceeeechHHHHHHHHHHHhh
Q psy11349 49 TVSINIPQFD--ASFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 49 ~~~~~~p~~~--~~f~G~gd~~~~~l~~~~~~ 78 (360)
.+.+..|..+ ...+|+||.|+|.+++.+.+
T Consensus 204 ~~~~~~~~~~~~~d~~GaGD~f~A~~l~~l~~ 235 (286)
T TIGR00687 204 RWHISRPLAVFMRQPVGTGDLIAALLLATLLH 235 (286)
T ss_pred eEEEeccCcCCCCCCCChHHHHHHHHHHHHhc
Confidence 3555555554 24599999999999888754
No 108
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=51.66 E-value=25 Score=35.25 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=34.5
Q ss_pred eeceEEEEEEeeeecCCCCceEEEEecceeccCCCeeEEEEEEceec-ceeeechHHHHHHHHHHHhh
Q psy11349 12 VIRTTLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFD-ASFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 12 ~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~f~G~gd~~~~~l~~~~~~ 78 (360)
.+.+.+|+||.....++....+... .+ ..+.+..|+++ ...+|.||.|+|.+++.+.+
T Consensus 165 ~~G~~~VvVt~G~~~g~~~~~~~~~-------~~--~~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~ 223 (448)
T PRK08573 165 ELGAEAVVVKGGHLEGEEAVDVLYH-------NG--TFREFRAPRVESGCTHGTGCSFSAAIAAGLAK 223 (448)
T ss_pred HcCCCEEEEecccCCCCceeEEEEE-------CC--eEEEEEecCcCCCCCCChHHHHHHHHHHHHHc
Confidence 3567788888654322111111111 11 23455666766 45799999999999888764
No 109
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=49.79 E-value=34 Score=31.13 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=23.2
Q ss_pred EEEEEEceecce-eeechHHHHHHHHHHHhh
Q psy11349 49 TVSINIPQFDAS-FTGTGDLFAALMLAYITR 78 (360)
Q Consensus 49 ~~~~~~p~~~~~-f~G~gd~~~~~l~~~~~~ 78 (360)
.+.+.-|+++.. .+|.||.|++.+++.+.+
T Consensus 189 ~~~~~~~~~~~~d~~GaGD~f~aalaa~la~ 219 (254)
T TIGR00097 189 IHILKAPRIETKNTHGTGCTLSAAIAANLAK 219 (254)
T ss_pred EEEEEecccCCCCCCChHHHHHHHHHHHHHC
Confidence 345666777766 699999999999888764
No 110
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=44.80 E-value=43 Score=33.32 Aligned_cols=100 Identities=17% Similarity=0.324 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhccc
Q psy11349 143 QDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSV 222 (360)
Q Consensus 143 ~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~ 222 (360)
+|++.+-+.+. +++.-. .....+++...+.++.+++.+-+ .+++|.. |.+-++++..+ ++..-
T Consensus 145 eQL~~La~q~~------v~~f~~--~~~~~Pv~Iak~al~~ak~~~~D-vvIvDTA----GRl~ide~Lm~----El~~I 207 (451)
T COG0541 145 EQLKQLAEQVG------VPFFGS--GTEKDPVEIAKAALEKAKEEGYD-VVIVDTA----GRLHIDEELMD----ELKEI 207 (451)
T ss_pred HHHHHHHHHcC------CceecC--CCCCCHHHHHHHHHHHHHHcCCC-EEEEeCC----CcccccHHHHH----HHHHH
Confidence 67777766654 444433 32344577888899999887533 5667764 44444444443 33334
Q ss_pred ceEEeCCHHH--HHhccCCCCCCHHHHHHHHHHHHhc-CCCEEEEe
Q psy11349 223 ADVICPNQFE--AELLTKIPIKDKASLLKTINVLHDR-GIKTVVIS 265 (360)
Q Consensus 223 ~diitpN~~E--~~~L~g~~~~~~~d~~~aa~~l~~~-g~~~Vlvt 265 (360)
..++.|++.= .-.++| .++.+.|+.+.+. +...|++|
T Consensus 208 k~~~~P~E~llVvDam~G------QdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 208 KEVINPDETLLVVDAMIG------QDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred HhhcCCCeEEEEEecccc------hHHHHHHHHHhhhcCCceEEEE
Confidence 5666665421 122345 4777888888774 77888888
No 111
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=40.35 E-value=2.5e+02 Score=24.37 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=45.0
Q ss_pred cCEEEE-eeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHh---
Q psy11349 160 YTHVLT-GYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAEL--- 235 (360)
Q Consensus 160 ~d~i~~-G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~--- 235 (360)
++.|.+ |+..+.+.++.+.++ .+.++ +.++.||- +..+...+.+ .+.+|.+--......++..
T Consensus 23 ~~~I~T~Gs~i~~~~i~~i~~~---~~~rg--VIIfTDpD-------~~GekIRk~i-~~~vp~~khafi~~~~a~~~~~ 89 (174)
T TIGR00334 23 VDVIETNGSALKDETINLIKKA---QKKQG--VIILTDPD-------FPGEKIRKKI-EQHLPGYENCFIPKHLAKPNKK 89 (174)
T ss_pred ceEEEECCCccCHHHHHHHHHH---hhcCC--EEEEeCCC-------CchHHHHHHH-HHHCCCCeEEeeeHHhcCcCCC
Confidence 666765 444455544444332 33444 88888992 2223333444 3555666555555555532
Q ss_pred ccCCCCCCHHHHHHHHHHHH
Q psy11349 236 LTKIPIKDKASLLKTINVLH 255 (360)
Q Consensus 236 L~g~~~~~~~d~~~aa~~l~ 255 (360)
=.|.+-.+++++.+++..+.
T Consensus 90 ~iGVE~As~e~I~~AL~~~~ 109 (174)
T TIGR00334 90 KIGVEEASVEAIIAALENVH 109 (174)
T ss_pred CcccCCCCHHHHHHHHHHhc
Confidence 24555566778877766554
No 112
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=38.77 E-value=1.2e+02 Score=23.84 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCC-CceEEE
Q psy11349 139 VITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANP-TLMYVC 195 (360)
Q Consensus 139 ~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~-~~~vv~ 195 (360)
.++.+++...+... ++|+|.+.... ......+.++++.+++.++ ++++++
T Consensus 36 ~~~~~~l~~~~~~~------~pdvV~iS~~~-~~~~~~~~~~i~~l~~~~~~~~~i~v 86 (119)
T cd02067 36 DVPPEEIVEAAKEE------DADAIGLSGLL-TTHMTLMKEVIEELKEAGLDDIPVLV 86 (119)
T ss_pred CCCHHHHHHHHHHc------CCCEEEEeccc-cccHHHHHHHHHHHHHcCCCCCeEEE
Confidence 34455555444444 38877654431 2234566777777777765 555544
No 113
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=37.94 E-value=54 Score=33.33 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=34.2
Q ss_pred ceEEEEEEeeeecCCCCceEEEEecceeccCCCeeEEEEEEceecc-eeeechHHHHHHHHHHHhh
Q psy11349 14 RTTLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDA-SFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 14 ~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~f~G~gd~~~~~l~~~~~~ 78 (360)
...+|+||......++. ...+... +. ..+.+..|+++. .+.|+||.|++.+++.+.+
T Consensus 175 G~~~VvItgg~~~~~~~-~~~~l~~------~~-~~~~~~~~~i~~~~t~GaGD~fsaaiaa~l~~ 232 (502)
T PLN02898 175 GPRYVLVKGGHLPDSLD-AVDVLYD------GT-EFHELRSSRIKTRNTHGTGCTLASCIAAELAK 232 (502)
T ss_pred CCCEEEEcCCCCCCCCc-ceEEEEc------CC-eEEEEecceeCCCCCCchhhhHHHHHHHHHHc
Confidence 45678888665432211 1101111 11 245566777774 4689999999999888764
No 114
>KOG0174|consensus
Probab=37.31 E-value=28 Score=30.48 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=32.6
Q ss_pred ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q psy11349 301 FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERT 341 (360)
Q Consensus 301 t~GaGD~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l~~t 341 (360)
.-|.|-+|.=+|+-.--+++++++|++++-..+++.++.+-
T Consensus 146 IgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rD 186 (224)
T KOG0174|consen 146 IGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERD 186 (224)
T ss_pred eccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 34999999988886555559999999998888877777653
No 115
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=36.91 E-value=1.1e+02 Score=26.12 Aligned_cols=41 Identities=2% Similarity=0.005 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhc
Q psy11349 142 EQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKA 187 (360)
Q Consensus 142 ~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~ 187 (360)
++.++.+.+++. ++|+++..++..++.++.+.+.++..+++
T Consensus 45 ~~~~~~~~~aia-----~ADii~~smlF~ed~v~~l~~~L~~~r~~ 85 (164)
T PF11965_consen 45 PEALEECEAAIA-----RADIIFGSMLFIEDHVRPLLPALEARRDH 85 (164)
T ss_pred hHHHHHHHHHHH-----hCCEEEeehhhhHHHHHHHHHHHHHHHcc
Confidence 455677777887 68888888888889899888888876543
No 116
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=34.80 E-value=1.6e+02 Score=29.30 Aligned_cols=65 Identities=25% Similarity=0.426 Sum_probs=44.0
Q ss_pred ccccCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEcccccc
Q psy11349 136 KGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGD 201 (360)
Q Consensus 136 ~g~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~ 201 (360)
.|+..+++++-.+++.+.-... .-.+.+|--++.....+.+-.+++..++.|..+.++|||.-+.
T Consensus 286 vGP~~~p~~l~~L~~~LnP~~e-pGRlTLI~RmGa~kV~~~LP~li~aV~~~G~~VvW~cDPMHGN 350 (443)
T TIGR01358 286 VGPSMTPDELLRLIERLNPENE-PGRLTLISRMGADKIADKLPPLLRAVKAAGRRVVWVCDPMHGN 350 (443)
T ss_pred ECCCCCHHHHHHHHHHhCCCCC-CceEEEEeccCchHHHHhHHHHHHHHHHcCCceEEeecCCCCC
Confidence 4677788888888887763321 1224555555555445677788888888887788999996554
No 117
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=34.11 E-value=3.7e+02 Score=24.55 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccCC
Q psy11349 243 DKASLLKTINVLHDRGIKTVVISSSELGP 271 (360)
Q Consensus 243 ~~~d~~~aa~~l~~~g~~~Vlvtg~~~g~ 271 (360)
+.++..+.+++.++.|...|++=+...|.
T Consensus 132 ~~~~~i~~~~~~LeAGA~~ViiEarEsg~ 160 (237)
T TIGR03849 132 TPDDRIKLINKDLEAGADYVIIEGRESGK 160 (237)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEeehhcCC
Confidence 34677777788888999999998765554
No 118
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=33.27 E-value=1.7e+02 Score=29.35 Aligned_cols=65 Identities=18% Similarity=0.308 Sum_probs=43.4
Q ss_pred ccccCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEcccccc
Q psy11349 136 KGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGD 201 (360)
Q Consensus 136 ~g~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~ 201 (360)
.|+..+++++-.+++.+.-... .-.+.+|--++.....+.+-.+++..++.|..+.++|||.-+.
T Consensus 306 vGPs~~pdel~~L~~~LnP~~e-pGRlTLI~RmGa~kV~~~LP~Li~aV~~~G~~VvW~cDPMHGN 370 (474)
T PLN02291 306 VSDKMDPEELVKLIEILNPQNK-PGRLTIIVRMGAEKLRVKLPHLIRAVRRAGQIVTWVSDPMHGN 370 (474)
T ss_pred ECCCCCHHHHHHHHHHhCCCCC-CceEEEEeccchHHHHHHHHHHHHHHHHcCCceEEeecCCCCC
Confidence 4677788888888887763321 1234455545544445677788888888887788999996554
No 119
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=33.24 E-value=1.6e+02 Score=28.20 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=46.3
Q ss_pred ceeeecccccccccccCCchhhhhcCeeeeeeeeeeecCCCC----CCccccccCCHHHHHHHHHHhhhCCCCccCEEEE
Q psy11349 90 TIATIQSVLERTAQSFPNKGQYEVLGFEVDAINTVQFSNHSG----YGHLKGKVITEQDFDELIEGLKMNDLMDYTHVLT 165 (360)
Q Consensus 90 ~vl~I~~~~~~~~~~~~~~~~l~~~G~~~~~i~t~~~s~~~~----~~~~~g~~l~~~~l~~ll~~~~~~~~~~~d~i~~ 165 (360)
+|+.+++--...--++. +|+.|+.+..+-. +.+-|. ..++....++.+++..+.+..+ +|+|+
T Consensus 14 kvmLLGSGELGKEvaIe----~QRLG~eViAVDr--Y~~APAmqVAhrs~Vi~MlD~~al~avv~rek------Pd~IV- 80 (394)
T COG0027 14 KVMLLGSGELGKEVAIE----AQRLGVEVIAVDR--YANAPAMQVAHRSYVIDMLDGDALRAVVEREK------PDYIV- 80 (394)
T ss_pred EEEEecCCccchHHHHH----HHhcCCEEEEecC--cCCChhhhhhhheeeeeccCHHHHHHHHHhhC------CCeee-
Confidence 46655543322333443 7889997765543 233331 2334556788888999988775 88886
Q ss_pred eeeCCHHHHHHHHHHHHHHHhcC
Q psy11349 166 GYCRSPQLLSKIGELVKELKKAN 188 (360)
Q Consensus 166 G~l~~~~~~~~i~~~l~~~~~~~ 188 (360)
. +....-.+.+.++.+.|
T Consensus 81 ----p-EiEAI~td~L~elE~~G 98 (394)
T COG0027 81 ----P-EIEAIATDALVELEEEG 98 (394)
T ss_pred ----e-hhhhhhHHHHHHHHhCC
Confidence 1 22222234555566666
No 120
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=32.77 E-value=2.7e+02 Score=23.31 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=28.1
Q ss_pred cccCCHHHHHHHHHHhhhCCCCccCEEEEeeeC-CHHHHHHHHHHHHHHHhc
Q psy11349 137 GKVITEQDFDELIEGLKMNDLMDYTHVLTGYCR-SPQLLSKIGELVKELKKA 187 (360)
Q Consensus 137 g~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~-~~~~~~~i~~~l~~~~~~ 187 (360)
|..++.+.++.+++.+.........+.++|--+ .....+.+.++++.+++.
T Consensus 44 g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEPl~~~~~~~l~~l~~~~k~~ 95 (154)
T PRK11121 44 GHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDPLHPQNVPDILKLVQRVKAE 95 (154)
T ss_pred CcccCHHHHHHHHHHHHHhCCCCCcEEEECCCccchhhHHHHHHHHHHHHHH
Confidence 344556667777777653321112355666322 123456777888877764
No 121
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=32.27 E-value=1.3e+02 Score=26.12 Aligned_cols=53 Identities=15% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhhCCCCccCEEEEeee--C-CHHHHHHHHHHHHHHHhcCCCceEEE-ccccc
Q psy11349 142 EQDFDELIEGLKMNDLMDYTHVLTGYC--R-SPQLLSKIGELVKELKKANPTLMYVC-DPVMG 200 (360)
Q Consensus 142 ~~~l~~ll~~~~~~~~~~~d~i~~G~l--~-~~~~~~~i~~~l~~~~~~~~~~~vv~-Dpv~~ 200 (360)
+.++.+++.+++ .|++.+-.+ . .++..+.+..+++.+++.+|+.||++ .|...
T Consensus 48 e~~~a~~ia~~~------a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~ 104 (178)
T PF14606_consen 48 EPEVADLIAEID------ADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPY 104 (178)
T ss_dssp -HHHHHHHHHS--------SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----
T ss_pred CHHHHHHHhcCC------CCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCc
Confidence 344667777775 676655443 3 34445678889999999999888766 55443
No 122
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=31.94 E-value=2.3e+02 Score=21.93 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=23.3
Q ss_pred ccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEE
Q psy11349 159 DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVC 195 (360)
Q Consensus 159 ~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~ 195 (360)
++|+|.+..... .+.....++++.+|+.+|++++++
T Consensus 51 ~pd~V~iS~~~~-~~~~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 51 RPDVVGISVSMT-PNLPEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp TCSEEEEEESSS-THHHHHHHHHHHHHTTCTTSEEEE
T ss_pred CCcEEEEEccCc-CcHHHHHHHHHHHHhcCCCCEEEE
Confidence 388776544222 234556777888888878777775
No 123
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.48 E-value=2.3e+02 Score=22.54 Aligned_cols=45 Identities=13% Similarity=0.026 Sum_probs=24.9
Q ss_pred ccCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCC
Q psy11349 138 KVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANP 189 (360)
Q Consensus 138 ~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~ 189 (360)
...+.+++-+..... ++|+|.+... .......+.++++.+++.++
T Consensus 35 ~~vp~e~~~~~a~~~------~~d~V~iS~~-~~~~~~~~~~~~~~L~~~~~ 79 (122)
T cd02071 35 LRQTPEEIVEAAIQE------DVDVIGLSSL-SGGHMTLFPEVIELLRELGA 79 (122)
T ss_pred CCCCHHHHHHHHHHc------CCCEEEEccc-chhhHHHHHHHHHHHHhcCC
Confidence 334445454443433 3787765444 23445566777777777654
No 124
>KOG4184|consensus
Probab=29.68 E-value=93 Score=30.09 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=44.0
Q ss_pred ccCEE-EEeee----CC-HHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHH
Q psy11349 159 DYTHV-LTGYC----RS-PQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFE 232 (360)
Q Consensus 159 ~~d~i-~~G~l----~~-~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E 232 (360)
++|.+ ++|.- .+ ++....+.++.+.+...-+.+|+=+... .+.+.++...+...++|++|-+=.|+.|
T Consensus 238 qPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlEla------S~~~~~l~~~i~h~VlPyVdSLGlNEQE 311 (478)
T KOG4184|consen 238 QPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELA------SMTNRELMSSIVHQVLPYVDSLGLNEQE 311 (478)
T ss_pred CCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHh------HHHHHHHHHHHHHHhhhhccccCCCHHH
Confidence 47854 56632 23 2333344444444444333445444431 2334566666677899999999999999
Q ss_pred HHhccC
Q psy11349 233 AELLTK 238 (360)
Q Consensus 233 ~~~L~g 238 (360)
+..|+.
T Consensus 312 L~fL~q 317 (478)
T KOG4184|consen 312 LLFLTQ 317 (478)
T ss_pred HHHHHH
Confidence 988864
No 125
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=29.56 E-value=2.9e+02 Score=24.57 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhhCCCCccCEEEEeeeC-CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHH---
Q psy11349 142 EQDFDELIEGLKMNDLMDYTHVLTGYCR-SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYAN--- 217 (360)
Q Consensus 142 ~~~l~~ll~~~~~~~~~~~d~i~~G~l~-~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~--- 217 (360)
.++...+++.+.. .++.+++|+-. .....+.+.++++.+++.+ .++++|.-..|- +.....+.+
T Consensus 12 ~~~a~~i~~~~~~----~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~--~~I~~D~K~~Di------g~t~~~~~~~~~ 79 (226)
T PF00215_consen 12 LEEALRIADELGD----YVDIIKVGTPLFLAYGLEALPEIIEELKERG--KPIFLDLKLGDI------GNTVARYAEAGF 79 (226)
T ss_dssp HHHHHHHHHHHGG----GSSEEEEEHHHHHHHCHHHHHHHHHHHHHTT--SEEEEEEEE-SS------HHHHHHHHHSCH
T ss_pred HHHHHHHHHHhcC----cceEEEEChHHHhcCChhhHHHHHHHHHHhc--CCEeeeeeeccc------chHHHHHHHHhh
Confidence 4556666666653 47899998653 2222336778888888877 899999865542 122222221
Q ss_pred -hhcccceEEeCCH
Q psy11349 218 -ELLSVADVICPNQ 230 (360)
Q Consensus 218 -~ll~~~diitpN~ 230 (360)
..-..+|.+|.|-
T Consensus 80 ~~~~~gaD~vTv~~ 93 (226)
T PF00215_consen 80 AAFELGADAVTVHP 93 (226)
T ss_dssp HHHTTTESEEEEEG
T ss_pred hhhcCCCcEEEEec
Confidence 1234788888875
No 126
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=29.43 E-value=4.5e+02 Score=24.14 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=53.1
Q ss_pred ccCEE-EEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEe-----CCHHH
Q psy11349 159 DYTHV-LTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVIC-----PNQFE 232 (360)
Q Consensus 159 ~~d~i-~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diit-----pN~~E 232 (360)
..+.| .+|-- ...+.+.+.++++.+++.| +.+.+|.+. +..++..+ ++++..|.+. ++..-
T Consensus 83 ~~~gvt~SGGE-P~~q~e~~~~~~~~ake~G--l~~~l~TnG------~~~~~~~~----~l~~~~D~v~~DlK~~~~~~ 149 (260)
T COG1180 83 SGGGVTFSGGE-PTLQAEFALDLLRAAKERG--LHVALDTNG------FLPPEALE----ELLPLLDAVLLDLKAFDDEL 149 (260)
T ss_pred CCCEEEEECCc-chhhHHHHHHHHHHHHHCC--CcEEEEcCC------CCCHHHHH----HHHhhcCeEEEeeccCChHH
Confidence 35644 44433 3356778899999999988 899999852 22333332 4445555544 34444
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHhcCC
Q psy11349 233 AELLTKIPIKDKASLLKTINVLHDRGI 259 (360)
Q Consensus 233 ~~~L~g~~~~~~~d~~~aa~~l~~~g~ 259 (360)
...++|.+. +...+.++.+.+.|+
T Consensus 150 y~~~tg~~~---~~vl~~~~~l~~~g~ 173 (260)
T COG1180 150 YRKLTGADN---EPVLENLELLADLGV 173 (260)
T ss_pred HHHHhCCCc---HHHHHHHHHHHcCCC
Confidence 777887653 566677777777664
No 127
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=28.87 E-value=1.1e+02 Score=31.44 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=25.7
Q ss_pred EEEEEEceecc-eeeechHHHHHHHHHHHhhccccccc
Q psy11349 49 TVSINIPQFDA-SFTGTGDLFAALMLAYITRTNHNVKE 85 (360)
Q Consensus 49 ~~~~~~p~~~~-~f~G~gd~~~~~l~~~~~~~~~~~~~ 85 (360)
.+.+.-|+++. ...|+||.|++.+++.+.+ +.++.+
T Consensus 221 ~~~~~~~~v~~~~t~GaGD~fsaalaa~La~-G~~l~e 257 (530)
T PRK14713 221 VTEVPGPRVDTRNTHGTGCSLSSALATRLGR-GGDWAA 257 (530)
T ss_pred EEEEeeeeeCCCCCCcHHHHHHHHHHHHHHC-CCCHHH
Confidence 45566777775 4689999999999988864 333443
No 128
>PRK08508 biotin synthase; Provisional
Probab=28.10 E-value=4.9e+02 Score=24.09 Aligned_cols=107 Identities=16% Similarity=0.060 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHhhhCCCCccCEE-E--EeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHH
Q psy11349 140 ITEQDFDELIEGLKMNDLMDYTHV-L--TGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYA 216 (360)
Q Consensus 140 l~~~~l~~ll~~~~~~~~~~~d~i-~--~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~ 216 (360)
++++++-+........ .+.-+ + .|...++...+.+.++++.+++.+|++.+..-. | +..++.++.++
T Consensus 40 ~s~eeI~~~a~~a~~~---g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~-----G--~~~~e~l~~Lk 109 (279)
T PRK08508 40 KDIEQIVQEAKMAKAN---GALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACN-----G--TASVEQLKELK 109 (279)
T ss_pred CCHHHHHHHHHHHHHC---CCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecC-----C--CCCHHHHHHHH
Confidence 4666665554444332 23322 2 344345556778888888888776554432211 2 12244444443
Q ss_pred HhhcccceEEeCCHHHHHhccCCCC--CCHHHHHHHHHHHHhcCC
Q psy11349 217 NELLSVADVICPNQFEAELLTKIPI--KDKASLLKTINVLHDRGI 259 (360)
Q Consensus 217 ~~ll~~~diitpN~~E~~~L~g~~~--~~~~d~~~aa~~l~~~g~ 259 (360)
+ ..+|-+-.|.+=.+.++.... .+.++..+.++...+.|.
T Consensus 110 ~---aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi 151 (279)
T PRK08508 110 K---AGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGL 151 (279)
T ss_pred H---cCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 1 245666666544444554322 345676777777766664
No 129
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=27.84 E-value=55 Score=31.30 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=24.8
Q ss_pred EEEEEceec-ceeeechHHHHHHHHHHHhh
Q psy11349 50 VSINIPQFD-ASFTGTGDLFAALMLAYITR 78 (360)
Q Consensus 50 ~~~~~p~~~-~~f~G~gd~~~~~l~~~~~~ 78 (360)
+.+.-|+++ ..|-|+||.|++.+.+.+.+
T Consensus 235 ~~~~~~ri~~~~~hGTGc~fASAIAa~LA~ 264 (321)
T PTZ00493 235 YKLRSKRKPGKDIHGTGCTLSTAIACYLAK 264 (321)
T ss_pred EEEEecccCCCCCCChHHHHHHHHHHHHHc
Confidence 568889998 67799999999999888864
No 130
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=27.53 E-value=1.9e+02 Score=28.76 Aligned_cols=65 Identities=18% Similarity=0.375 Sum_probs=34.5
Q ss_pred ccccCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEcccccc
Q psy11349 136 KGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGD 201 (360)
Q Consensus 136 ~g~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~ 201 (360)
.|+..+++++-.+++.+.-... .-.+.+|--++.....+.+-.+++..++.|..+.++|||.-+.
T Consensus 289 vGP~~~~~~l~~l~~~LnP~~~-pGRltlI~RmGa~~v~~~LP~li~aV~~~g~~vvW~cDPMHGN 353 (439)
T PF01474_consen 289 VGPSMTPEELVELCDRLNPDNE-PGRLTLITRMGADKVRERLPPLIEAVQAAGHPVVWSCDPMHGN 353 (439)
T ss_dssp E-TT--HHHHHHHHHHHSTT---TTSEEEEE---TTTHHHHHHHHHHHHHTTT---EEEE-TSTTS
T ss_pred eCCCCCHHHHHHHHHHhCCCCC-CCeEEEEecCCcHHHHHHhHHHHHHHHHCCCceEEeccCCCCC
Confidence 4567778888888887763321 1234555444444445566777777777776688999996554
No 131
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=26.56 E-value=43 Score=33.53 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=19.4
Q ss_pred EEEEEeccc--CCcccCchHHHHH-HHHHHHHc
Q psy11349 289 TVSINIPQF--DASFTGTGDLFAA-LMLAYITR 318 (360)
Q Consensus 289 ~~~~~~~~v--~~~t~GaGD~f~a-~~~a~L~~ 318 (360)
...+|..-+ |..|+|-||+|+| +|++.++.
T Consensus 410 v~~vPs~~v~~P~sTVGLGDtissgaF~~~~~~ 442 (446)
T TIGR02045 410 AVLIPSRLVENPKSTVGLGDTISTGAFVSYLAL 442 (446)
T ss_pred EEEechhhcCCCcceeccCcccchhHHHHHHHH
Confidence 334444433 3338899999977 77777764
No 132
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=25.25 E-value=51 Score=33.13 Aligned_cols=19 Identities=32% Similarity=0.579 Sum_probs=14.3
Q ss_pred cccCchHHHHH-HHHHHHHc
Q psy11349 300 SFTGTGDLFAA-LMLAYITR 318 (360)
Q Consensus 300 ~t~GaGD~f~a-~~~a~L~~ 318 (360)
.|+|-||+|+| +|++.++.
T Consensus 437 sTVGLGDtisagaF~~~~~~ 456 (463)
T PRK03979 437 STVGLGDTISAGAFVSYLSL 456 (463)
T ss_pred ceeccCcccchhHHHHHHHH
Confidence 38899999987 56666553
No 133
>KOG0780|consensus
Probab=25.21 E-value=2.8e+02 Score=27.47 Aligned_cols=87 Identities=16% Similarity=0.248 Sum_probs=46.2
Q ss_pred eeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhcccceEEeCCHHHHHhccCCCCCCHH
Q psy11349 166 GYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKA 245 (360)
Q Consensus 166 G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll~~~diitpN~~E~~~L~g~~~~~~~ 245 (360)
|.....+++....+-++++++.+-+ .|++|.. |..-...+.. +++..-...+.||+- ++=.+...-.
T Consensus 161 gsyte~dpv~ia~egv~~fKke~fd-vIIvDTS----GRh~qe~sLf----eEM~~v~~ai~Pd~v----i~VmDasiGQ 227 (483)
T KOG0780|consen 161 GSYTEADPVKIASEGVDRFKKENFD-VIIVDTS----GRHKQEASLF----EEMKQVSKAIKPDEI----IFVMDASIGQ 227 (483)
T ss_pred ecccccchHHHHHHHHHHHHhcCCc-EEEEeCC----CchhhhHHHH----HHHHHHHhhcCCCeE----EEEEeccccH
Confidence 3333344567778888999887744 5667874 3332222333 344445566666642 2211111112
Q ss_pred HHHHHHHHHHh-cCCCEEEEe
Q psy11349 246 SLLKTINVLHD-RGIKTVVIS 265 (360)
Q Consensus 246 d~~~aa~~l~~-~g~~~Vlvt 265 (360)
...+.++.+-+ -++..|+||
T Consensus 228 aae~Qa~aFk~~vdvg~vIlT 248 (483)
T KOG0780|consen 228 AAEAQARAFKETVDVGAVILT 248 (483)
T ss_pred hHHHHHHHHHHhhccceEEEE
Confidence 34445555544 367788888
No 134
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=25.20 E-value=1.1e+02 Score=24.00 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=24.2
Q ss_pred ccCchHHHHHHHHHHHHcCC-CCHHHHHHHH
Q psy11349 301 FTGTGDLFAALMLAYITRTN-HNVKESLERT 330 (360)
Q Consensus 301 t~GaGD~f~a~~~a~L~~~g-~~l~~A~~~A 330 (360)
.+|-||..-|.+++++.+ | .+.+||++.-
T Consensus 55 kh~kGd~aEA~iAyAWLe-g~it~eEaveil 84 (120)
T PF11469_consen 55 KHGKGDIAEALIAYAWLE-GKITIEEAVEIL 84 (120)
T ss_dssp CCGHHHHHHHHHHHHHHT-TSS-HHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHh-ccccHHHHHHHH
Confidence 789999999999999999 7 6888888543
No 135
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=24.95 E-value=4.3e+02 Score=25.58 Aligned_cols=135 Identities=17% Similarity=0.108 Sum_probs=74.1
Q ss_pred EEEEceecceeeechHHHHHHHHHHHhhccccccc------------ccc----cceeeecccccccccccCCchhhhh-
Q psy11349 51 SINIPQFDASFTGTGDLFAALMLAYITRTNHNVKE------------SLE----RTIATIQSVLERTAQSFPNKGQYEV- 113 (360)
Q Consensus 51 ~~~~p~~~~~f~G~gd~~~~~l~~~~~~~~~~~~~------------~~~----~~vl~I~~~~~~~~~~~~~~~~l~~- 113 (360)
.++||.+.+..--+++.-.|..|+...-.. -.|| .++ .++++--|....+...+. .|-.
T Consensus 44 ~~giPii~AnMdTV~~~~mA~~la~~g~~~-~iHk~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~---~L~~~ 119 (346)
T PRK05096 44 WSGVPIIAANMDTVGTFEMAKALASFDILT-AVHKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTK---QILAL 119 (346)
T ss_pred ccCCceEecCCCccccHHHHHHHHHCCCeE-EEecCCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHH---HHHhc
Confidence 456999999999999877776766543111 1122 111 222221111111222222 2323
Q ss_pred -cCeeeeeeeeeeecCCCC------------C---CccccccCCHHHHHHHHHHhhhCCCCccCEEEEeeeCC-------
Q psy11349 114 -LGFEVDAINTVQFSNHSG------------Y---GHLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRS------- 170 (360)
Q Consensus 114 -~G~~~~~i~t~~~s~~~~------------~---~~~~g~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~------- 170 (360)
.|+|+..+-+.. -|+. | .-..|...+.+..+.+++. .+|++++|..+.
T Consensus 120 ~~g~D~iviD~Ah--Ghs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~a-------GAD~vKVGIGpGSiCtTr~ 190 (346)
T PRK05096 120 SPALNFICIDVAN--GYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILS-------GADIVKVGIGPGSVCTTRV 190 (346)
T ss_pred CCCCCEEEEECCC--CcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHc-------CCCEEEEcccCCccccCcc
Confidence 477776666542 1111 1 1134555677767665442 488998876531
Q ss_pred -----HHHHHHHHHHHHHHHhcCCCceEEEccccc
Q psy11349 171 -----PQLLSKIGELVKELKKANPTLMYVCDPVMG 200 (360)
Q Consensus 171 -----~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~ 200 (360)
-.++.++.+..+.+++.+ ++++-|=-.+
T Consensus 191 vtGvG~PQltAV~~~a~~a~~~g--vpiIADGGi~ 223 (346)
T PRK05096 191 KTGVGYPQLSAVIECADAAHGLG--GQIVSDGGCT 223 (346)
T ss_pred ccccChhHHHHHHHHHHHHHHcC--CCEEecCCcc
Confidence 246788888888888766 7888775433
No 136
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=24.32 E-value=1.6e+02 Score=28.78 Aligned_cols=49 Identities=27% Similarity=0.480 Sum_probs=31.0
Q ss_pred HHHHHHHhhhCCCCccCEEEE----eeeC-CHHHHHHHHHHHHHHHhcCCCceEEEcc
Q psy11349 145 FDELIEGLKMNDLMDYTHVLT----GYCR-SPQLLSKIGELVKELKKANPTLMYVCDP 197 (360)
Q Consensus 145 l~~ll~~~~~~~~~~~d~i~~----G~l~-~~~~~~~i~~~l~~~~~~~~~~~vv~Dp 197 (360)
++.+.+.++. +.+++.+ ||-. ..-.++.+.++++..|+.+|++.+++|=
T Consensus 144 ~~~i~~~~~~----~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDN 197 (403)
T PF06838_consen 144 WEAIKKALKP----NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDN 197 (403)
T ss_dssp HHHHHHHHHT----TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-
T ss_pred HHHHHHhhcc----CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 4444455542 3667776 6764 3455778888888888888999999994
No 137
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=23.82 E-value=6.6e+02 Score=24.17 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=55.6
Q ss_pred ccCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHH
Q psy11349 138 KVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYAN 217 (360)
Q Consensus 138 ~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~ 217 (360)
..++.+++..+++.+..... ..+.++| +.+-....+.++++.+++.+ +.+.+.. +|.+ +.++.++.+.+
T Consensus 44 ~~~~~e~~~~ii~~~~~~g~--~~v~~~G--GEPll~~~~~~il~~~~~~g--~~~~i~T----NG~l-l~~~~~~~L~~ 112 (378)
T PRK05301 44 AELSTEEWIRVLREARALGA--LQLHFSG--GEPLLRKDLEELVAHARELG--LYTNLIT----SGVG-LTEARLAALKD 112 (378)
T ss_pred CCCCHHHHHHHHHHHHHcCC--cEEEEEC--CccCCchhHHHHHHHHHHcC--CcEEEEC----CCcc-CCHHHHHHHHH
Confidence 35677778888877764321 2234444 22222223567788887766 4443333 3433 34455555432
Q ss_pred hhcc--cceEEeCCHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCE
Q psy11349 218 ELLS--VADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKT 261 (360)
Q Consensus 218 ~ll~--~~diitpN~~E~~~L~g~~~~~~~d~~~aa~~l~~~g~~~ 261 (360)
.-+. ..++=.++......+.|.. .+.+...++++.+.+.|...
T Consensus 113 ~g~~~v~iSldg~~~e~~d~irg~~-g~f~~~~~~i~~l~~~g~~v 157 (378)
T PRK05301 113 AGLDHIQLSFQDSDPELNDRLAGTK-GAFAKKLAVARLVKAHGYPL 157 (378)
T ss_pred cCCCEEEEEecCCCHHHHHHHcCCC-chHHHHHHHHHHHHHCCCce
Confidence 1111 1122223333344555542 23456667777777777654
No 138
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=23.77 E-value=5.2e+02 Score=24.11 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=44.3
Q ss_pred HHHHHHhhhCCCCccCEEEEeeeC----CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhc-
Q psy11349 146 DELIEGLKMNDLMDYTHVLTGYCR----SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELL- 220 (360)
Q Consensus 146 ~~ll~~~~~~~~~~~d~i~~G~l~----~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll- 220 (360)
+.+++.+.. .+.++|+|+-. ..+-...+.++++.+++.+ .+|++|.-..|= +...+.+.+.++
T Consensus 44 ~~ivd~~~~----~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~g--~~VilD~K~~DI------~nTv~~ya~a~~~ 111 (278)
T PRK00125 44 RIIVDATAD----LVAAFKPQIAYFEAHGAEGLAQLERTIAYLREAG--VLVIADAKRGDI------GSTAEAYAKAAFE 111 (278)
T ss_pred HHHHHhcCC----cccEEeccHHHHHhcCchhhhHHHHHHHHHHHCC--CcEEEEeecCCh------HHHHHHHHHHHhc
Confidence 344555442 35578887642 2344567777888888877 789999854441 223333434444
Q ss_pred --ccceEEeCCH
Q psy11349 221 --SVADVICPNQ 230 (360)
Q Consensus 221 --~~~diitpN~ 230 (360)
-.+|.+|.|.
T Consensus 112 ~~~g~DavTVhp 123 (278)
T PRK00125 112 SPLEADAVTVSP 123 (278)
T ss_pred CccCCcEEEECC
Confidence 2589999984
No 139
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.80 E-value=4.6e+02 Score=27.76 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=45.6
Q ss_pred ccCEE-EEeeeCCHHHHHHHHHHHHHHHhc-CCCceEEEccccccCC---CCCCC--cCcHHHHHHhhcccceEEeCCHH
Q psy11349 159 DYTHV-LTGYCRSPQLLSKIGELVKELKKA-NPTLMYVCDPVMGDNG---RMYVP--EEVLPIYANELLSVADVICPNQF 231 (360)
Q Consensus 159 ~~d~i-~~G~l~~~~~~~~i~~~l~~~~~~-~~~~~vv~Dpv~~~~g---~~~~~--~~~~~~~~~~ll~~~diitpN~~ 231 (360)
++|+| ++|.-+.+... .....+.+++++ |. ..||+||...... ..|+. +..--++...++.+. +.=+.+
T Consensus 169 nAd~Ili~GsNpae~hP-v~~~~i~~Ak~~~Ga-klIvVDPR~t~Ta~~AD~~l~irPGTD~All~gmi~~i--i~ytpe 244 (649)
T cd02752 169 NADVILVMGGNPAEAHP-VSFKWILEAKEKNGA-KLIVVDPRFTRTAAKADLYVPIRSGTDIAFLGGMINYI--IRYTPE 244 (649)
T ss_pred cCCEEEEECCChHHhCc-HHHHHHHHHHHcCCC-eEEEEcCCCCchhHhcCEeeCcCCChHHHHHHHHHHHH--HhCCHH
Confidence 47755 55655432211 233445556654 53 4789999665431 12221 110001111111111 111346
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHhc
Q psy11349 232 EAELLTKIPIKDKASLLKTINVLHDR 257 (360)
Q Consensus 232 E~~~L~g~~~~~~~d~~~aa~~l~~~ 257 (360)
+++.++|.+ .+++.++++.+.+.
T Consensus 245 ~v~~itGvp---~e~I~~~A~~~a~a 267 (649)
T cd02752 245 EVEDICGVP---KEDFLKVAEMFAAT 267 (649)
T ss_pred HHHHHHCcC---HHHHHHHHHHHHhc
Confidence 778888875 46788888888765
No 140
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=21.68 E-value=2.9e+02 Score=24.09 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=45.1
Q ss_pred cccCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCC--CceEEEccccccCCCCCCCcCcHHH
Q psy11349 137 GKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANP--TLMYVCDPVMGDNGRMYVPEEVLPI 214 (360)
Q Consensus 137 g~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~--~~~vv~Dpv~~~~g~~~~~~~~~~~ 214 (360)
|..++.+++-...... ++|+|.+..... .....+.++++.+++.++ ++++++= |.. +.++
T Consensus 117 G~~~p~~~l~~~~~~~------~~d~v~lS~~~~-~~~~~~~~~i~~lr~~~~~~~~~i~vG------G~~-~~~~---- 178 (201)
T cd02070 117 GRDVPPEEFVEAVKEH------KPDILGLSALMT-TTMGGMKEVIEALKEAGLRDKVKVMVG------GAP-VNQE---- 178 (201)
T ss_pred CCCCCHHHHHHHHHHc------CCCEEEEecccc-ccHHHHHHHHHHHHHCCCCcCCeEEEE------CCc-CCHH----
Confidence 4455566665554444 388776544322 234556777777777765 5655542 111 2222
Q ss_pred HHHhhcccceEEeCCHHHHHhcc
Q psy11349 215 YANELLSVADVICPNQFEAELLT 237 (360)
Q Consensus 215 ~~~~ll~~~diitpN~~E~~~L~ 237 (360)
+.+. + .+|...+|..++-.+.
T Consensus 179 ~~~~-~-GaD~~~~da~~av~~~ 199 (201)
T cd02070 179 FADE-I-GADGYAEDAAEAVAIA 199 (201)
T ss_pred HHHH-c-CCcEEECCHHHHHHHH
Confidence 2222 2 7888888888776553
No 141
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=21.67 E-value=1.7e+02 Score=22.27 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=22.8
Q ss_pred EEeeeC--CHHHHHHHHHHHHHHHhcCCCceEEEccccc
Q psy11349 164 LTGYCR--SPQLLSKIGELVKELKKANPTLMYVCDPVMG 200 (360)
Q Consensus 164 ~~G~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~ 200 (360)
+.|++. ...+..+..+..+.+++.| ..|++|...
T Consensus 3 IaGPmtG~~~~N~~~f~~~a~~L~~~G---~~vvnPa~~ 38 (92)
T PF14359_consen 3 IAGPMTGLPDYNRPAFNAAAKRLRAKG---YEVVNPAEL 38 (92)
T ss_pred EeCCcCCCcchHHHHHHHHHHHHHHCC---CEEeCchhh
Confidence 456664 2444567777778888776 577899655
No 142
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=21.65 E-value=3e+02 Score=24.50 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=31.5
Q ss_pred ccccCCHHHHHHHHHHhhhCCCCccCEEEEeeeCCHHHHHHHHHHHHHHHhcCCCceEEE
Q psy11349 136 KGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVC 195 (360)
Q Consensus 136 ~g~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~~~~~~~~i~~~l~~~~~~~~~~~vv~ 195 (360)
-|.+++.+++-...... ++|+|.+..+. ..+...+.++++.+++.++++++++
T Consensus 122 LG~~vp~e~~v~~~~~~------~~~~V~lS~~~-~~~~~~~~~~i~~L~~~~~~~~i~v 174 (213)
T cd02069 122 LGVMVPIEKILEAAKEH------KADIIGLSGLL-VPSLDEMVEVAEEMNRRGIKIPLLI 174 (213)
T ss_pred CCCCCCHHHHHHHHHHc------CCCEEEEccch-hccHHHHHHHHHHHHhcCCCCeEEE
Confidence 34456666666555555 38877654442 2335566777787777765555544
No 143
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=21.35 E-value=3.3e+02 Score=26.33 Aligned_cols=137 Identities=14% Similarity=0.117 Sum_probs=72.6
Q ss_pred EEEEEEceecceeeechHHHHHHHHHHHhhccccccc----------------ccccceeeecccccccccccCCchhhh
Q psy11349 49 TVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKE----------------SLERTIATIQSVLERTAQSFPNKGQYE 112 (360)
Q Consensus 49 ~~~~~~p~~~~~f~G~gd~~~~~l~~~~~~~~~~~~~----------------~~~~~vl~I~~~~~~~~~~~~~~~~l~ 112 (360)
...++||.+++..--+++.-.|.-|++..-.. -+|| .....+++-.|..+.+..... .|-
T Consensus 41 ~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~-~iHk~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~---~L~ 116 (343)
T TIGR01305 41 QTYSGVPIIAANMDTVGTFEMAAALSQHSIFT-AIHKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMT---SIL 116 (343)
T ss_pred ceeeCCceEecCCCcccCHHHHHHHHHCCCeE-EEeeCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHH---HHH
Confidence 34689999999999888876666666542111 0111 111222221111111222222 333
Q ss_pred hc--CeeeeeeeeeeecCCCC------------C---CccccccCCHHHHHHHHHHhhhCCCCccCEEEEeeeC-----C
Q psy11349 113 VL--GFEVDAINTVQFSNHSG------------Y---GHLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCR-----S 170 (360)
Q Consensus 113 ~~--G~~~~~i~t~~~s~~~~------------~---~~~~g~~l~~~~l~~ll~~~~~~~~~~~d~i~~G~l~-----~ 170 (360)
.. ++|+..+-+.. -|+. + .-+.|...+.++.+.+++. .+|.|++|..+ .
T Consensus 117 ~a~~~~d~iviD~Ah--Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~a-------GAD~ikVgiGpGSictt 187 (343)
T TIGR01305 117 EAVPQLKFICLDVAN--GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILS-------GADIVKVGIGPGSVCTT 187 (343)
T ss_pred hcCCCCCEEEEECCC--CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHc-------CCCEEEEcccCCCcccC
Confidence 44 46665555442 1211 1 1124556677777766542 48888877332 1
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCceEEEccccc
Q psy11349 171 -------PQLLSKIGELVKELKKANPTLMYVCDPVMG 200 (360)
Q Consensus 171 -------~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~ 200 (360)
-.++.++.+..+.++..+ ++++.|--.+
T Consensus 188 R~~~Gvg~pqltAv~~~a~aa~~~~--v~VIaDGGIr 222 (343)
T TIGR01305 188 RTKTGVGYPQLSAVIECADAAHGLK--GHIISDGGCT 222 (343)
T ss_pred ceeCCCCcCHHHHHHHHHHHhccCC--CeEEEcCCcC
Confidence 146778888777776544 8898886444
No 144
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=21.08 E-value=4.1e+02 Score=26.65 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy11349 306 DLFAALMLAYITRTNHNVKESLERTIATIQSVL 338 (360)
Q Consensus 306 D~f~a~~~a~L~~~g~~l~~A~~~A~a~~~~~l 338 (360)
.-+.|.++++|+. |.++++|+-.|.+|+++.+
T Consensus 133 ~~~~a~~~a~la~-gf~~~DA~~lA~a~~~~~~ 164 (437)
T PRK12290 133 EQHLAWVLTLLAL-DFPIEDALTLARAMLTQGD 164 (437)
T ss_pred HHHHHHHHHHHhC-CCChHhHHHHHHHHHhCCC
Confidence 4899999999999 9999999999999987755
No 145
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=21.07 E-value=6.6e+02 Score=23.16 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=44.6
Q ss_pred HHHHHHhhhCCCCccCEEEEeeeC----CHHHHHHHHHHHHHHHhcCCCceEEEccccccCCCCCCCcCcHHHHHHhhc-
Q psy11349 146 DELIEGLKMNDLMDYTHVLTGYCR----SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELL- 220 (360)
Q Consensus 146 ~~ll~~~~~~~~~~~d~i~~G~l~----~~~~~~~i~~~l~~~~~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~~~~~ll- 220 (360)
..+++.+.. .+.++++|+-. ..+.+..+.+.++.+++.+ .++++|.-..|= +...+.+.+.++
T Consensus 44 ~~ii~~l~~----~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g--~~VilD~K~~DI------pnTv~~~a~a~~~ 111 (261)
T TIGR02127 44 LRIIDATAE----YAAVVKPQVAFFERFGSEGFKALEEVIAHARSLG--LPVLADVKRGDI------GSTASAYAKAWLG 111 (261)
T ss_pred HHHHHhcCC----cceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCC--CeEEEEeeccCh------HHHHHHHHHHHHh
Confidence 345555542 35678888642 3555667777888888877 899999855441 222333333333
Q ss_pred -ccceEEeCCH
Q psy11349 221 -SVADVICPNQ 230 (360)
Q Consensus 221 -~~~diitpN~ 230 (360)
..+|.+|.|.
T Consensus 112 ~~g~D~vTvh~ 122 (261)
T TIGR02127 112 HLHADALTVSP 122 (261)
T ss_pred hcCCCEEEECC
Confidence 2579999884
No 146
>KOG4532|consensus
Probab=20.57 E-value=1.1e+02 Score=28.50 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=34.0
Q ss_pred eceEEEEEEeeeecCCCCceEEEEecceeccCCCeeEEEEEEceecceee
Q psy11349 13 IRTTLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDASFT 62 (360)
Q Consensus 13 ~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~ 62 (360)
.+++++..-|..+++|+..+.|++.+ ++.|.+.||.-.+|..
T Consensus 154 ~h~~~~~~ns~~~snd~~~~~~Vgds--------~~Vf~y~id~~sey~~ 195 (344)
T KOG4532|consen 154 VHNQNLTQNSLHYSNDPSWGSSVGDS--------RRVFRYAIDDESEYIE 195 (344)
T ss_pred eeccccceeeeEEcCCCceEEEecCC--------CcceEEEeCCccceee
Confidence 35566777788999999999999876 5889999998777654
Done!