RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11349
(360 letters)
>gnl|CDD|240372 PTZ00344, PTZ00344, pyridoxal kinase; Provisional.
Length = 296
Score = 264 bits (676), Expect = 6e-87
Identities = 109/280 (38%), Positives = 172/280 (61%), Gaps = 21/280 (7%)
Query: 86 SLERTIATIQS------VLERTAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKV 139
S+E+ + +IQS V R A +FP ++LGF+VD +NTVQ SNH+GY +KG
Sbjct: 2 SMEKKVLSIQSHVTHGYVGNRAA-TFP----LQLLGFDVDFVNTVQLSNHTGYPVIKGHR 56
Query: 140 ITEQDFDELIEGLKMNDLM-DYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPV 198
+ + L++GL+ N+L+ DYT+VLTGY S +L ++ VKE+K+ P L+++CDPV
Sbjct: 57 LDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPV 116
Query: 199 MGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRG 258
MGD+G++YV EEV+ Y EL+ ADVI PNQFEA LL+ + +KD + L+ I+ H++G
Sbjct: 117 MGDDGKLYVKEEVVDAY-RELIPYADVITPNQFEASLLSGVEVKDLSDALEAIDWFHEQG 175
Query: 259 IKTVVISSSELGPEK-HLLGVASTVVGGSKTTV--SINIPQFDASFTGTGDLFAALMLAY 315
I VVI+S + HL + S +K + +P + +TGTGDLFAAL+LA+
Sbjct: 176 IPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIEGRYTGTGDLFAALLLAF 235
Query: 316 ITRTNHNVKESLERTIATIQSVLERTAQSFPNKGSSKASV 355
+ H + ++ + + +Q +++ T + GS +S+
Sbjct: 236 SHQ--HPMDLAVGKAMGVLQDIIKAT---RESGGSGSSSL 270
Score = 62.4 bits (152), Expect = 5e-11
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 15 TTLVVIATQILQRDPSAL----TCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAA 70
+VVI + DP+ L +C++K + + + +P + +TGTGDLFAA
Sbjct: 176 IPVVVITSFREDEDPTHLRFLLSCRDK-----DTKNNKRFTGKVPYIEGRYTGTGDLFAA 230
Query: 71 LMLAYITRTNHNVKESLERTIATIQSVLERT 101
L+LA+ + H + ++ + + +Q +++ T
Sbjct: 231 LLLAFSHQ--HPMDLAVGKAMGVLQDIIKAT 259
>gnl|CDD|238578 cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal kinase plays a
key role in the synthesis of the active coenzyme
pyridoxal-5'-phosphate (PLP), by catalyzing the
phosphorylation of the precursor vitamin B6 in the
presence of Zn2+ and ATP. Mammals are unable to
synthesize PLP de novo and require its precursors in the
form of vitamin B6 (pyridoxal, pyridoxine, and
pyridoxamine) from their diet. Pyridoxal kinase encoding
genes are also found in many other species including
yeast and bacteria.
Length = 254
Score = 256 bits (657), Expect = 1e-84
Identities = 103/234 (44%), Positives = 149/234 (63%), Gaps = 9/234 (3%)
Query: 114 LGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDLM-DYTHVLTGYCRSPQ 172
LG++VDA+ TVQFSNH+GYG G V++ ++ ++L+EGL+ L+ +Y VLTGY S +
Sbjct: 26 LGWDVDALPTVQFSNHTGYGTWTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGYLGSAE 85
Query: 173 LLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYV-PEEVLPIYANELLSVADVICPNQF 231
+ + E+VK LK+ NP L+YVCDPVMGDNG++YV EE++P+Y + L+ +AD+I PNQF
Sbjct: 86 QVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQF 145
Query: 232 EAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS 291
E ELLT I D LH +G KTVV++S EL + + + ST
Sbjct: 146 ELELLTGKKINDLEDAKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTA----TEAWL 201
Query: 292 INIP--QFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQ 343
+ P F A F GTGDLFAAL+LA + + ++ E+LE+ + + VLE T +
Sbjct: 202 VQRPKIPFPAYFNGTGDLFAALLLARLLKG-KSLAEALEKALNFVHEVLEATYE 254
Score = 52.6 bits (127), Expect = 6e-08
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 36 EKELKLIQSGSKTTVSINIP--QFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIAT 93
+ ++++ S + + P F A F GTGDLFAAL+LA + + ++ E+LE+ +
Sbjct: 186 DDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLFAALLLARLLKG-KSLAEALEKALNF 244
Query: 94 IQSVLERTAQ 103
+ VLE T +
Sbjct: 245 VHEVLEATYE 254
>gnl|CDD|215529 PLN02978, PLN02978, pyridoxal kinase.
Length = 308
Score = 250 bits (640), Expect = 2e-81
Identities = 101/234 (43%), Positives = 147/234 (62%), Gaps = 4/234 (1%)
Query: 112 EVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSP 171
++LGF+VD IN+VQFSNH+GY KG+V+ + LIEGL+ N L+ YTH+LTGY S
Sbjct: 39 QLLGFDVDPINSVQFSNHTGYPTFKGQVLDGEQLWALIEGLEANGLLFYTHLLTGYIGSV 98
Query: 172 QLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQF 231
L + +VK+L+ NP L YVCDPV+GD G++YVP E++P+Y +++ +A ++ PNQF
Sbjct: 99 SFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQF 158
Query: 232 EAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVV--GGSKTT 289
EAE LT I I + + +LH G VVI+S ++ + LL V S G
Sbjct: 159 EAEQLTGIRIVTEEDAREACAILHAAGPSKVVITSIDI--DGKLLLVGSHRKEKGARPEQ 216
Query: 290 VSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQ 343
I IP+ A FTGTGDL AAL+L + + N+ ++ E ++++Q+VL RT
Sbjct: 217 FKIVIPKIPAYFTGTGDLMAALLLGWSHKYPDNLDKAAELAVSSLQAVLRRTLA 270
Score = 55.9 bits (135), Expect = 7e-09
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 52 INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQ 103
I IP+ A FTGTGDL AAL+L + + N+ ++ E ++++Q+VL RT
Sbjct: 219 IVIPKIPAYFTGTGDLMAALLLGWSHKYPDNLDKAAELAVSSLQAVLRRTLA 270
>gnl|CDD|225149 COG2240, PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme
metabolism].
Length = 281
Score = 214 bits (546), Expect = 1e-67
Identities = 93/245 (37%), Positives = 135/245 (55%), Gaps = 11/245 (4%)
Query: 101 TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMND-LMD 159
+A FP + LG +V A+ TVQFSNH+GYG G V+ + +L+ GL+ D L +
Sbjct: 18 SAAIFP----LQRLGLDVWAVPTVQFSNHTGYGKWTGIVMPPEQLADLLNGLEAIDKLGE 73
Query: 160 YTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANEL 219
VLTGY S + + I +VK +K+ANP +Y+CDPVMGD G +YV EV Y +EL
Sbjct: 74 CDAVLTGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDEL 133
Query: 220 LSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVA 279
L +AD+I PN FE E+LT P+ +K L G K V+++S L G
Sbjct: 134 LPLADIITPNIFELEILTGKPLNTLDDAVKAARKLGADGPKIVLVTS--LSRAGMSTGNF 191
Query: 280 STVVGGSKTTVSINI-PQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVL 338
+ G ++ +I P GTGDLF+AL+LA + ++ ++LER A + VL
Sbjct: 192 --EMLGKSAELAWHISPLVPFIPNGTGDLFSALLLARL-LEGLSLTQALERATAAVYEVL 248
Query: 339 ERTAQ 343
+ T +
Sbjct: 249 QETQK 253
Score = 44.6 bits (106), Expect = 3e-05
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 55 PQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQ 103
P GTGDLF+AL+LA + ++ ++LER A + VL+ T +
Sbjct: 206 PLVPFIPNGTGDLFSALLLARL-LEGLSLTQALERATAAVYEVLQETQK 253
>gnl|CDD|211599 TIGR00687, pyridox_kin, pyridoxal kinase. E. coli has an enzyme
PdxK that acts in vitro as a
pyridoxine/pyridoxal/pyridoxamine kinase, but mutants
lacking PdxK activity retain a specific pyridoxal
kinase, PdxY. PdxY acts in the salvage pathway of
pyridoxal 5'-phosphate biosynthesis. Mammalian forms of
pyridoxal kinase are more similar to PdxY than to PdxK.
The PdxK isozyme is omitted from the seed alignment but
scores above the trusted cutoff.ThiD and related
proteins form an outgroup [Biosynthesis of cofactors,
prosthetic groups, and carriers, Pyridoxine].
Length = 286
Score = 202 bits (516), Expect = 4e-63
Identities = 95/263 (36%), Positives = 146/263 (55%), Gaps = 13/263 (4%)
Query: 89 RTIATIQSVLER-----TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQ 143
+ + +IQS + A +FP + LGFEV A+NTVQFSNH+GYG G+V+
Sbjct: 2 KNVLSIQSHVVYGHVGNRAATFP----LQRLGFEVWAVNTVQFSNHTGYGKWTGQVLPPD 57
Query: 144 DFDELIEGL-KMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN 202
+ EL++GL +N L VL+GY S + ++ + +V+++K+ANP +YVCDPVMGD
Sbjct: 58 ELTELVDGLAAINKLNQCDAVLSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDP 117
Query: 203 GR-MYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKT 261
+ YV ++L +Y + + VAD+I PNQFE ELLT I L + L G
Sbjct: 118 EKGCYVAPDLLEVYREKAIPVADIITPNQFELELLTGRKINTVEEALAAADALIAMGPDI 177
Query: 262 VVISS-SELGPEKHLLGVASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTN 320
V+++ + G ++ V + +S + F GTGDL AAL+LA + N
Sbjct: 178 VLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVGTGDLIAALLLATLLHGN 237
Query: 321 HNVKESLERTIATIQSVLERTAQ 343
++KE+LE+T++ + VL T
Sbjct: 238 -SLKEALEKTVSAVYHVLVTTIA 259
Score = 42.5 bits (100), Expect = 2e-04
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 56 QFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKGQYEV 113
F GTGDL AAL+LA + N ++KE+LE+T++ + VL T G+YE+
Sbjct: 213 VFMRQPVGTGDLIAALLLATLLHGN-SLKEALEKTVSAVYHVLVTTIAL----GKYEL 265
>gnl|CDD|235592 PRK05756, PRK05756, pyridoxamine kinase; Validated.
Length = 286
Score = 171 bits (436), Expect = 4e-51
Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 114 LGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGL-KMNDLMDYTHVLTGYCRSPQ 172
LG V +NTVQFSNH+GYG G V+ E+++G+ + L + VL+GY S +
Sbjct: 28 LGVNVWPLNTVQFSNHTGYGKWTGCVMPPSHLTEIVQGIADIGWLGECDAVLSGYLGSAE 87
Query: 173 LLSKIGELVKELKKANPTLMYVCDPVMGDNGR-MYVPEEVLPIYANELLSVADVICPNQF 231
I + V+ +K ANP +Y CDPVMGD + V V + L AD+I PN F
Sbjct: 88 QGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLF 147
Query: 232 EAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS 291
E E L+ P++ + L RG K V+++S L + ++ +
Sbjct: 148 ELEWLSGRPVETLEDAVAAARALIARGPKIVLVTS--LARAGYPADRFEMLLVTADGAWH 205
Query: 292 INIP--QFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQS 344
I+ P F G GDL +AL LA + + +++E+LE T A + V+ RT +
Sbjct: 206 ISRPLVDFMRQPVGVGDLTSALFLARLLQG-GSLEEALEHTTAAVYEVMARTKER 259
Score = 42.5 bits (101), Expect = 2e-04
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 56 QFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKGQYEVL 114
F G GDL +AL LA + + +++E+LE T A + V+ RT + G YE+
Sbjct: 212 DFMRQPVGVGDLTSALFLARLLQG-GSLEEALEHTTAAVYEVMARTKER----GSYELQ 265
>gnl|CDD|181269 PRK08176, pdxK, pyridoxal-pyridoxamine
kinase/hydroxymethylpyrimidine kinase; Reviewed.
Length = 281
Score = 96.6 bits (241), Expect = 5e-23
Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 6/231 (2%)
Query: 115 GFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMND-LMDYTHVLTGYCRSPQL 173
G V A+ TV SN Y G I ++ F + L+ D L V TGY S
Sbjct: 43 GLRVFAVPTVLLSNTPHYPTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGSASQ 102
Query: 174 LSKIGELVKELKKANPTLMYVCDPVMGDNGR-MYVPEEVLPIYANELLSVADVICPNQFE 232
+ + E + L+ +P L+ + DPV+GD +YV ++ Y LL +A + PN FE
Sbjct: 103 IKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFE 162
Query: 233 AELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSI 292
E+LT P + S + L +K VVI+S+ E + V VV V I
Sbjct: 163 LEILTGKPCRTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVV--VVTADSVNV-I 219
Query: 293 NIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQ 343
+ P+ D GTGDLF A +++ + + + ++ R + V+ T Q
Sbjct: 220 SHPRVDTDLKGTGDLFCAELVSGLLK-GKALTDAAHRAGLRVLEVMRYTQQ 269
Score = 31.5 bits (72), Expect = 0.52
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 55 PQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQ 103
P+ D GTGDLF A +++ + + + ++ R + V+ T Q
Sbjct: 222 PRVDTDLKGTGDLFCAELVSGLLK-GKALTDAAHRAGLRVLEVMRYTQQ 269
>gnl|CDD|180840 PRK07105, PRK07105, pyridoxamine kinase; Validated.
Length = 284
Score = 81.5 bits (202), Expect = 1e-17
Identities = 58/241 (24%), Positives = 108/241 (44%), Gaps = 28/241 (11%)
Query: 114 LGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQL 173
+G +V + T S+H+G + + K +L + + +GY SP+
Sbjct: 31 MGLQVCPLPTALLSSHTGGFQNPSIIDLTDGMQAFLTHWKSLNL-KFDAIYSGYLGSPRQ 89
Query: 174 LSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVP--EEVLPIYANELLSVADVICPNQF 231
+ + + +K KK L+ V DPVMGDNG++Y +E++ +L+ ADVI PN
Sbjct: 90 IQIVSDFIKYFKK--KDLLVVVDPVMGDNGKLYQGFDQEMVEE-MRKLIQKADVITPNLT 146
Query: 232 EAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS 291
EA LL P +K+ + IK ++ ++LGP+ ++ S K V+
Sbjct: 147 EACLLLDKPYLEKS--------YSEEEIKQLLRKLADLGPKIVII--TSVPFEDGKIGVA 196
Query: 292 -----------INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340
+ A + GTGD+F +++ + + ++ +L+R + I+ +
Sbjct: 197 YYDRATDRFWKVFCKYIPAHYPGTGDIFTSVITGSLLQ-GDSLPIALDRAVQFIEKGIRA 255
Query: 341 T 341
T
Sbjct: 256 T 256
Score = 31.0 bits (71), Expect = 0.79
Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 55 PQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERT 101
A + GTGD+F +++ + + ++ +L+R + I+ + T
Sbjct: 211 KYIPAHYPGTGDIFTSVITGSLLQ-GDSLPIALDRAVQFIEKGIRAT 256
>gnl|CDD|223428 COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine
kinase [Coenzyme metabolism].
Length = 263
Score = 65.3 bits (160), Expect = 4e-12
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 20/175 (11%)
Query: 175 SKIGELVKELKKANPTLMYVCDPVM----GDNGRMYVPEEVLPIYANELLSVADVICPNQ 230
++I E+V E K V DPVM GD + EE + ELL +A V+ PN
Sbjct: 84 AEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPL---LDEEAVEALREELLPLATVVTPNL 140
Query: 231 FEAELLTKI-PIKDKASLLKTINVLHDRGIKTVVISSSELGPEK--HLLGVASTVVGGSK 287
EAE L+ + IK + + + +LH+ G K V+I K HL G A V+
Sbjct: 141 PEAEALSGLPKIKTEEDMKEAAKLLHELGAKAVLI--------KGGHLEGEAVDVLYDGG 192
Query: 288 TTVSINIPQFDASFT-GTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERT 341
+ + P+ T GTG +A + A + + +++E++++ + + +
Sbjct: 193 SFYTFEAPRIPTKNTHGTGCTLSAAIAANLAK-GLSLEEAVKKAKEFVTRAIRDS 246
>gnl|CDD|232823 TIGR00097, HMP-P_kinase, phosphomethylpyrimidine kinase. This
model represents phosphomethylpyrimidine kinase, the
ThiD protein of thiamine biosynthesis. The protein is
commonly observed within operons containing other
thiamine biosynthesis genes. Numerous examples are
fusion proteins with other thiamine-biosynthetic
domains. Saccaromyces has three recent paralogs, two of
which are isofunctional and score above the trusted
cutoff. The third shows a longer branch length in a
phylogenetic tree and scores below the trusted cutoff,
as do putative second copies in a number of species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Thiamine].
Length = 254
Score = 60.0 bits (146), Expect = 2e-10
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 175 SKIGELV-KELKKANPTLMYVCDPVM-GDNGRMYVPEEVLPIYANELLSVADVICPNQFE 232
++I E V ++L++ + V DPVM +G + EE + LL +A +I PN E
Sbjct: 79 AEIVEAVARKLREYPVRPL-VVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPE 137
Query: 233 AELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVAST-VVGGSKTTVS 291
AE L I+ + ++K L + G K V+I HL G + V+
Sbjct: 138 AEALLGTKIRTEQDMIKAAKKLRELGPKAVLIKGG------HLEGDQAVDVLFDGGEIHI 191
Query: 292 INIPQFDASFT-GTGDLFAALMLAYITRTNHNVKESLERTIATIQSVL 338
+ P+ + T GTG +A + A + + ++KE+++ + +
Sbjct: 192 LKAPRIETKNTHGTGCTLSAAIAANLAK-GLSLKEAVKEAKEFVTGAI 238
>gnl|CDD|236858 PRK11142, PRK11142, ribokinase; Provisional.
Length = 306
Score = 59.9 bits (146), Expect = 4e-10
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 208 PEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVI 264
P LP +ELL++ D+I PN+ EAE LT I ++D K VLH +GI+TV+I
Sbjct: 167 PARELP---DELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLI 220
>gnl|CDD|238574 cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine
phosphate kinase (HMPP-kinase) catalyzes two consecutive
phosphorylation steps in the thiamine phosphate
biosynthesis pathway, leading to the synthesis of
vitamin B1. The first step is the phosphorylation of the
hydroxyl group of HMP to form
4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate
(HMP-P) and then the phophorylation of HMP-P to form
4-amino-5-hydroxymethyl-2-methyl-pyrimidine
pyrophosphate (HMP-PP), which is the substrate for the
thiamine synthase coupling reaction.
Length = 242
Score = 58.3 bits (142), Expect = 8e-10
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 165 TGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVM-GDNGRMYVPEEVLPIYANELLSVA 223
G S +++ + E +K+ V DPVM +G + ++ + LL +A
Sbjct: 74 IGMLGSAEIIEAVAEALKDYPDIP----VVLDPVMVAKSGDSLLDDDAIEALRELLLPLA 129
Query: 224 DVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVAST-V 282
+I PN EAELLT + I + ++K L G K V+I HL G + V
Sbjct: 130 TLITPNLPEAELLTGLEIATEEDMMKAAKALLALGAKAVLIKGG------HLPGDEAVDV 183
Query: 283 VGGSKTTVSINIPQFDA-SFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340
+ P+ D + GTG ++ + A + + +++E++ + +
Sbjct: 184 LYDGGGFFEFESPRIDTKNTHGTGCTLSSAIAANLAK-GLSLEEAVREAKEYVTQAIRN 241
>gnl|CDD|219893 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase. This
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate
(TPP) synthesis pathway, TPP is an essential cofactor
for many enzymes.
Length = 246
Score = 57.5 bits (140), Expect = 1e-09
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 23/176 (13%)
Query: 175 SKIGELVKE-LKKANPTLMYVCDPVM-GDNGRMYVPEEVLPIYANELLSVADVICPNQFE 232
++I E V E L K + V DPVM +G + E + ELL +A +I PN E
Sbjct: 72 AEIIEAVAEKLDKYGVPV--VLDPVMVAKSGDSLLDPEAIEALREELLPLATLITPNLPE 129
Query: 233 AELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEK--HLLGVASTVV-----GG 285
AE LT IK + + L + G K V+I K HL G + VV GG
Sbjct: 130 AEALTGRKIKTLEDMKEAAKKLLELGAKAVLI--------KGGHLEGEEAVVVDVLYDGG 181
Query: 286 SKTTVSINIPQFDASFT-GTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340
T P+ T GTG +A + A + + +++E++ + + +
Sbjct: 182 GFFT--FEAPRIPTKNTHGTGCTLSAAIAAELAK-GLSLEEAVRKAKEYVTEAIRD 234
>gnl|CDD|233751 TIGR02152, D_ribokin_bact, ribokinase. This model describes
ribokinase, an enzyme catalyzing the first step in
ribose catabolism. The rbsK gene encoding ribokinase
typically is found with ribose transport genes.
Ribokinase belongs to the carbohydrate kinase pfkB
family (pfam00294). In the wide gulf between the current
trusted (360 bit) and noise (100 bit) cutoffs are a
number of sequences, few of which are clustered with
predicted ribose transport genes but many of which are
currently annotated as if having ribokinase activity.
Most likely some have this function and others do not
[Energy metabolism, Sugars].
Length = 293
Score = 57.6 bits (140), Expect = 2e-09
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 18/137 (13%)
Query: 217 NELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLL 276
+ELLS+ D+I PN+ EAE+LT I + D+ K L ++G+K V+I+ LG +
Sbjct: 166 DELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIIT---LGSK---- 218
Query: 277 GVASTVVGGSKTTVSINIPQFDASF---TGTGDLFAALMLAYITRTNHNVKESLER-TIA 332
G +V ++ + IP F T GD F + ++++++ A
Sbjct: 219 GAL--LVSKDESKL---IPAFKVKAVDTTAAGDTFNGAFAVALAE-GKSLEDAIRFANAA 272
Query: 333 TIQSVLERTAQ-SFPNK 348
SV + AQ S P
Sbjct: 273 AAISVTRKGAQSSIPYL 289
>gnl|CDD|215842 pfam00294, PfkB, pfkB family carbohydrate kinase. This family
includes a variety of carbohydrate and pyrimidine
kinases.
Length = 298
Score = 57.4 bits (139), Expect = 2e-09
Identities = 53/240 (22%), Positives = 79/240 (32%), Gaps = 33/240 (13%)
Query: 113 VLGFEVDAINTVQFSN--HSGYGHLK-----------------GKVITEQDFD---ELIE 150
LG EV I V N LK G + D D +
Sbjct: 48 RLGGEVTFIGKVGDDNFGEFLLELLKKEGVDTDYVVIDEDTRTGLALILVDGDGERTINF 107
Query: 151 GLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGD-NGRMYVPE 209
+ + + +L G L L +A + G + + P
Sbjct: 108 YRGAAADLTPEELPEDLLENADILYLSGSLPLPLPEATLEELIEAAKNGGTFDPNLRDPL 167
Query: 210 EVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSEL 269
ELL +AD++ PN+ E E LT I D L ++ +G+KTVV++
Sbjct: 168 WADLEVLLELLPLADILKPNEEELEALTGEKINDIEEALAALHKH-AKGVKTVVVTLGAD 226
Query: 270 GPEKHLLGVASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLER 329
G A V G + V TG GD F A LA + +++E+L
Sbjct: 227 G--------ALLVDGDGEVHVPPVPKVKVVDTTGAGDAFVAGFLAGLLA-GKSLEEALRF 277
>gnl|CDD|238177 cd00287, ribokinase_pfkB_like, ribokinase/pfkB superfamily: Kinases
that accept a wide variety of substrates, including
carbohydrates and aromatic small molecules, all are
phosphorylated at a hydroxyl group. The superfamily
includes ribokinase, fructokinase, ketohexokinase,
2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase,
the minor 6-phosphofructokinase (PfkB),
inosine-guanosine kinase, and adenosine kinase. Even
though there is a high degree of structural conservation
within this superfamily, their multimerization level
varies widely, monomeric (e.g. adenosine kinase),
dimeric (e.g. ribokinase), and trimeric (e.g THZ
kinase).
Length = 196
Score = 54.4 bits (131), Expect = 8e-09
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 23/142 (16%)
Query: 179 ELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTK 238
+ ++E ++ V DP EE+ +LL D++ PN+ EAE LT
Sbjct: 75 DALEEARRRGVP--VVLDPGPR--AVRLDGEELE-----KLLPGVDILTPNEEEAEALTG 125
Query: 239 IPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFD 298
+ + +L +G K V+++ E G + V T V +P F
Sbjct: 126 RRDLEVKEAAEAAALLLSKGPKVVIVTLGEKG---------AIVATRGGTEVH--VPAFP 174
Query: 299 AS---FTGTGDLFAALMLAYIT 317
TG GD F A + A +
Sbjct: 175 VKVVDTTGAGDAFLAALAAGLA 196
>gnl|CDD|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of
ribose to ribose-5-phosphate using ATP. This reaction is
the first step in the ribose metabolism. It traps ribose
within the cell after uptake and also prepares the sugar
for use in the synthesis of nucleotides and histidine,
and for entry into the pentose phosphate pathway.
Ribokinase is dimeric in solution.
Length = 292
Score = 54.9 bits (133), Expect = 1e-08
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 216 ANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVI 264
ELL++ D++ PN+ EA LLT I + D+ K +L +G+K V++
Sbjct: 169 PAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIV 217
>gnl|CDD|180561 PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/
hydroxy-phosphomethylpyrimidine kinase; Reviewed.
Length = 266
Score = 52.8 bits (128), Expect = 7e-08
Identities = 37/104 (35%), Positives = 46/104 (44%), Gaps = 20/104 (19%)
Query: 176 KIG--------ELVKELKKANPTLMYVCDPVM----GDNGRMYVPEEVLPIYA--NELLS 221
KIG E V E K P V DPVM GD + ++ + A LL
Sbjct: 78 KIGMLASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPL---LADDA--VAALRERLLP 132
Query: 222 VADVICPNQFEAELLTKIPIKDKASLLKT-INVLHDRGIKTVVI 264
+A +I PN EAE LT +PI D +K LH G K V+I
Sbjct: 133 LATLITPNLPEAEALTGLPIADTEDEMKAAARALHALGCKAVLI 176
>gnl|CDD|185541 PTZ00292, PTZ00292, ribokinase; Provisional.
Length = 326
Score = 47.0 bits (112), Expect = 7e-06
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 13/134 (9%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
L + C N+ EA L+T + + D S K L G++ V+I+ LG L+
Sbjct: 194 PFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVENVIIT---LGANGCLIV 250
Query: 278 VASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERT--IATIQ 335
+ D TG GD F M AY ++KES +R IA I
Sbjct: 251 EKEN---EPVHVPGKRVKAVDT--TGAGDCFVGSM-AYFMSRGKDLKESCKRANRIAAI- 303
Query: 336 SVLERTAQ-SFPNK 348
SV Q S+P+
Sbjct: 304 SVTRHGTQSSYPHP 317
>gnl|CDD|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase. Found in
eukaryotes and bacteria, YeiC-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 288
Score = 46.5 bits (111), Expect = 9e-06
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
LL D++ PN+ E E L I++ K +L GIK V+++ K +L
Sbjct: 172 YLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLPGIKNVIVT----LGAKGVL- 226
Query: 278 VASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIA----T 333
++S G P+ + TG GD F A ++A + ++ +SL A T
Sbjct: 227 LSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLE-GMSLDDSLRFAQAAAALT 285
Query: 334 IQS 336
++S
Sbjct: 286 LES 288
>gnl|CDD|183513 PRK12413, PRK12413, phosphomethylpyrimidine kinase; Provisional.
Length = 253
Score = 45.4 bits (108), Expect = 2e-05
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 176 KIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANEL-------LSVADVICP 228
+I E + K +P + V DPV+ V +E + +EL VI P
Sbjct: 83 EIAEQALDFIKGHPGIPVVLDPVL-------VCKETHDVEVSELRQELIQFFPYVTVITP 135
Query: 229 NQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVIS-SSELGPEKHLLGVASTVVGGSK 287
N EAELL+ IK + + L+D G K VVI + L +K A + K
Sbjct: 136 NLVEAELLSGKEIKTLEDMKEAAKKLYDLGAKAVVIKGGNRLSQKK-----AIDLFYDGK 190
Query: 288 TTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLE 328
V + P + + G G FA+ + + + + + E+++
Sbjct: 191 EFVILESPVLEKNNIGAGCTFASSIASQLVK-GKSPLEAVK 230
>gnl|CDD|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism].
Length = 311
Score = 40.9 bits (96), Expect = 5e-04
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 206 YVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVIS 265
P ELL++AD++ PN+ EAELLT + +L +G+KTVV+
Sbjct: 167 PRPALWDRELLEELLALADILFPNEEEAELLT----GLEEDAEAAAALLLAKGVKTVVV- 221
Query: 266 SSELGPEKHLLGVASTVVGGSKTTVSINIPQ---FDASFTGTGDLFAALMLAYITR 318
LG E G GG T + D TG GD FAA LA +
Sbjct: 222 --TLGAE----GAVVFTGGGEVTVPVPAAFKVKVVDT--TGAGDAFAAGFLAGLLE 269
>gnl|CDD|238577 cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose
synthase involved in the biosynthesis of the
lipopolysaccharide (LPS) core precursor
ADP-L-glycero-D-manno-heptose. LPS plays an important
role in maintaining the structural integrity of the
bacterial outer membrane of gram-negative bacteria. RfaE
consists of two domains, a sugar kinase domain,
represented here, and a domain belonging to the
cytidylyltransferase superfamily.
Length = 304
Score = 40.6 bits (96), Expect = 7e-04
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 18/99 (18%)
Query: 223 ADVICPNQFEAELLTKIPIKDKASLLKTI-NVLHDRGIKTVVISSSELGPEKHLLGVAST 281
A ++ PN+ EA I D L +L ++ ++++ E G T
Sbjct: 182 ATLLTPNEKEAREALGDEINDDDELEAAGEKLLELLNLEALLVTLGEEG---------MT 232
Query: 282 VVGGSKTTVSI---NIPQFDASFTGTGDLF---AALMLA 314
+ I +D TG GD AL LA
Sbjct: 233 LFERDGEVQHIPALAKEVYDV--TGAGDTVIATLALALA 269
>gnl|CDD|183624 PRK12616, PRK12616, pyridoxal kinase; Reviewed.
Length = 270
Score = 39.3 bits (91), Expect = 0.002
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 194 VCDPVM---GDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKI-PIKDKASLLK 249
V DPVM G N +Y PE + +L +A VI PN FEA L+ + IK + +
Sbjct: 105 VIDPVMVCKGANEVLY-PEHAEAL-REQLAPLATVITPNLFEAGQLSGMGEIKTVEQMKE 162
Query: 250 TINVLHDRGIKTVVIS-SSELGPEKHLLGVASTVVGGSKTTVSINIPQFDASFT-GTGDL 307
+H+ G + VVI+ +L EK A V+ +T + D +T G G
Sbjct: 163 AAKKIHELGAQYVVITGGGKLKHEK-----AVDVLYDGETAEVLESEMIDTPYTHGAGCT 217
Query: 308 FAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFP 346
F+A + A + + VKE++ I + ++ +SFP
Sbjct: 218 FSAAVTAELAK-GSEVKEAIYAAKEFITAAIK---ESFP 252
>gnl|CDD|236297 PRK08573, PRK08573, phosphomethylpyrimidine kinase; Provisional.
Length = 448
Score = 38.9 bits (91), Expect = 0.003
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 194 VCDPVM-GDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTIN 252
V DPVM +G + E+ + LL +A V+ PN+ EAE LT + I+ K
Sbjct: 101 VVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAK 160
Query: 253 VLH-DRGIKTVVISSSEL-GPE 272
+ + G + VV+ L G E
Sbjct: 161 YIVEELGAEAVVVKGGHLEGEE 182
>gnl|CDD|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor
6-phosphofructokinase (pfkB) and related sugar kinases.
FruK plays an important role in the predominant pathway
for fructose utilisation.This group also contains
tagatose-6-phophate kinase, an enzyme of the tagatose
6-phosphate pathway, which responsible for breakdown of
the galactose moiety during lactose metabolism by
bacteria such as L. lactis.
Length = 289
Score = 37.5 bits (88), Expect = 0.007
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 20/114 (17%)
Query: 224 DVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELG-----PEKHLLGV 278
+I PN+ E E L P+ D+ ++ L +RG + V++S G +
Sbjct: 179 FLIKPNREELEELFGRPLGDEEDVIAAARKLIERGAENVLVSLGADGALLVTKDGVYRAS 238
Query: 279 ASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIA 332
V S TV G GD A +A + + +++E+L +A
Sbjct: 239 PPKVKVVS--TV------------GAGDSMVAGFVAGLAQ-GLSLEEALRLAVA 277
>gnl|CDD|183512 PRK12412, PRK12412, pyridoxal kinase; Reviewed.
Length = 268
Score = 36.9 bits (85), Expect = 0.009
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 26/210 (12%)
Query: 142 EQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVM-- 199
+ + IEG+ ++ L TG S +++ + E +++ N V DPVM
Sbjct: 61 KPQLETTIEGVGVDALK------TGMLGSVEIIEMVAETIEKHNFKN----VVVDPVMVC 110
Query: 200 -GDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRG 258
G + ++ PE + L+ A V+ PN FEA L+ + I + + +H G
Sbjct: 111 KGADEALH-PETND-CLRDVLVPKALVVTPNLFEAYQLSGVKINSLEDMKEAAKKIHALG 168
Query: 259 IKTVVIS-SSELGPEKHLLGVASTVVGGSKTTVSINIPQFDASFT-GTGDLFAALMLAYI 316
K V+I S+LG E A V+ +T + + D + T G G ++A + A +
Sbjct: 169 AKYVLIKGGSKLGTET-----AIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAITAEL 223
Query: 317 TRTNHNVKESLERTIATIQSVLERTAQSFP 346
+ VKE+++ I + + SF
Sbjct: 224 AK-GKPVKEAVKTAKEFITAAIR---YSFK 249
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate
transport and metabolism].
Length = 310
Score = 36.0 bits (84), Expect = 0.021
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 224 DVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVV 283
+I PN+ E E L + ++K L GI+ V++S LG ++
Sbjct: 180 WLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIVS----------LGADGALL 229
Query: 284 GGSKTTVSINIPQFDA-SFTGTGDLFAALMLAYITRTNHNVKESL 327
++ + P+ S G GD A LA + + +++E+L
Sbjct: 230 VTAEGVYFASPPKVQVVSTVGAGDSMVAGFLAGLLKGK-SLEEAL 273
>gnl|CDD|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates
2-keto-3-deoxygluconate (KDG) to form
2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the
common intermediate product, that allows organisms to
channel D-glucuronate and/or D-galacturinate into the
glycolysis and therefore use polymers, like pectin and
xylan as carbon sources.
Length = 294
Score = 35.6 bits (83), Expect = 0.028
Identities = 47/203 (23%), Positives = 72/203 (35%), Gaps = 40/203 (19%)
Query: 140 ITEQDFDELIEGLKMNDLMDYTHV-LTGY--CRSPQLLSKIGELVKELKKANPTLMYVCD 196
+T +D DE L H+ L+G S + E ++ K T+ D
Sbjct: 112 LTPEDLDE-------AALAGADHLHLSGITLALSESAREALLEALEAAKARGVTV--SFD 162
Query: 197 PVMGDN--GRMYVPEEVLPIYANELLSVADVICPNQFEAELLT-KIPIKDKASLLKTINV 253
N +++ EE ELL D++ P++ EAE L D A
Sbjct: 163 L----NYRPKLWSAEEAREAL-EELLPYVDIVLPSEEEAEALLGDEDPTDAAERAL---- 213
Query: 254 LHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQ-FDASFTGTGDLFAALM 312
G+K VV+ G A GG + V + D TG GD FAA
Sbjct: 214 ALALGVKAVVVKLGAEG--------ALVYTGGGRVFVPAYPVEVVDT--TGAGDAFAA-- 261
Query: 313 LAYITR--TNHNVKESLERTIAT 333
++ +++E+L A
Sbjct: 262 -GFLAGLLEGWDLEEALRFANAA 283
>gnl|CDD|215486 PLN02898, PLN02898, HMP-P kinase/thiamin-monophosphate
pyrophosphorylase.
Length = 502
Score = 33.6 bits (77), Expect = 0.17
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 194 VCDPVM-GDNGRMYVPEEVLPIYANELLSVADVICPNQFEAE-LLTKIPIKDKASLLKTI 251
V DPVM +G + +L ELL +A ++ PN EA LL P++ A +
Sbjct: 109 VVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLGGDPLETVADMRSAA 168
Query: 252 NVLHDRGIKTVVISSSEL 269
LH G + V++ L
Sbjct: 169 KELHKLGPRYVLVKGGHL 186
>gnl|CDD|182165 PRK09954, PRK09954, putative kinase; Provisional.
Length = 362
Score = 32.6 bits (74), Expect = 0.26
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 228 PNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVI 264
P Q E E+L I A +N LH +G++ + +
Sbjct: 239 PTQPELEILWGQAITSDADRNAAVNALHQQGVQQIFV 275
>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family.
This family consists largely of 1-phosphofructokinases,
but also includes tagatose-6-kinases and
6-phosphofructokinases.
Length = 303
Score = 32.5 bits (75), Expect = 0.27
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 224 DVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTV- 282
+I PN E E L +K + +++ L DRG + V++S LG + LL
Sbjct: 178 FLIKPNHEELEELFGRELKTEEEIIEAARELLDRGAENVLVS---LGADGALLVTKEGAL 234
Query: 283 -VGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIAT 333
K V + G GD A LA + R +++E+L +A
Sbjct: 235 KATPPKVEV--------VNTVGAGDSMVAGFLAGLAR-GLSLEEALRFAVAA 277
>gnl|CDD|224651 COG1737, RpiR, Transcriptional regulators [Transcription].
Length = 281
Score = 31.5 bits (72), Expect = 0.63
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 16/97 (16%)
Query: 246 SLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDASFTGTG 305
+++ + +RG K + I+ S P L + +V + + + + +
Sbjct: 192 EIVEAAELAKERGAKVIAITDSADSP----LAKLADIV------LLVPVAEESFFRSPIS 241
Query: 306 DLFAALML------AYITRTNHNVKESLERTIATIQS 336
A L L A R + L+R A + S
Sbjct: 242 SRIAQLALIDALITAVAQRRGEAALKRLKRIKALLDS 278
>gnl|CDD|185381 PRK15484, PRK15484, lipopolysaccharide
1,2-N-acetylglucosaminetransferase; Provisional.
Length = 380
Score = 31.7 bits (72), Expect = 0.67
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 199 MGDNGRMYVPEEVLPIYANELLSVADV-ICPNQFEAELLTKIPIKDKASLLKTINVLHDR 257
+ N ++ VP + L + E L AD+ I PN F E P + L N+ D
Sbjct: 137 LDKNAKIIVPSQFLKKFYEERLPNADISIVPNGFCLETYQSNPQPNLRQQL---NISPD- 192
Query: 258 GIKTVVISSSELGPEKHLL 276
+TV++ + + P+K +L
Sbjct: 193 --ETVLLYAGRISPDKGIL 209
>gnl|CDD|182111 PRK09850, PRK09850, pseudouridine kinase; Provisional.
Length = 313
Score = 31.1 bits (70), Expect = 0.75
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 207 VPEEVLPIYA------NELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIK 260
VP V P+ A + L+ + PN+ EAE L+ I + + + K H G+
Sbjct: 159 VPVFVDPVSAWKCVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLN 218
Query: 261 TVVIS 265
+V+S
Sbjct: 219 RLVLS 223
>gnl|CDD|238921 cd01946, ribokinase_group_C, Ribokinase-like subgroup C. Found
only in bacteria, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time.
Length = 277
Score = 30.9 bits (70), Expect = 0.89
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 15/113 (13%)
Query: 220 LSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVA 279
L+ DV+ N EA LT +L+K ++ G K ++I E G LL
Sbjct: 161 LAKVDVVIINDGEARQLTGAA-----NLVKAARLILAMGPKALIIKRGEYGA---LLFTD 212
Query: 280 STVVGGSKTTVSINIPQ-FDASFTGTGDLFAALMLAYITRTNHNVKESLERTI 331
+ + FD TG GD FA + Y+ + ++ R I
Sbjct: 213 DGYFAAP----AYPLESVFDP--TGAGDTFAGGFIGYLASQKDTSEANMRRAI 259
>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This
family is structurally different from the alpha/beta
hydrolase family (pfam00561). This family includes
L-2-haloacid dehalogenase, epoxide hydrolases and
phosphatases. The structure of the family consists of
two domains. One is an inserted four helix bundle, which
is the least well conserved region of the alignment,
between residues 16 and 96 of Pseudomonas sp.
(S)-2-haloacid dehalogenase 1. The rest of the fold is
composed of the core alpha/beta domain. Those members
with the characteristic DxD triad at the N-terminus are
probably phosphatidylglycerolphosphate (PGP)
phosphatases involved in cardiolipin biosynthesis in the
mitochondria.
Length = 187
Score = 29.9 bits (67), Expect = 1.4
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 3/111 (2%)
Query: 157 LMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYA 216
L D V+ + + +G + N T + V R EE+L
Sbjct: 12 LTDGEPVVPEAEALLEAAAALGVAIVIAAGENLTKEGREELVRRLLLRALAGEELLEELL 71
Query: 217 NELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSS 267
+V V+ LT LK L + GIK +++
Sbjct: 72 RAGATVVAVLDLVVLGLIALTDPLYPGAREALKE---LKEAGIKLAILTGD 119
>gnl|CDD|240375 PTZ00347, PTZ00347, phosphomethylpyrimidine kinase; Provisional.
Length = 504
Score = 29.9 bits (67), Expect = 2.2
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 163 VLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVM----GDN-GRMYVPEEVLPIYAN 217
V G + + L + E +K L V DPV+ GD+ ++VL +Y
Sbjct: 303 VKLGLVPTARQLEIVIEKLKNLP-------MVVDPVLVATSGDDLVAQKNADDVLAMYKE 355
Query: 218 ELLSVADVICPNQFEAE 234
+ +A +I PN EAE
Sbjct: 356 RIFPMATIITPNIPEAE 372
>gnl|CDD|205921 pfam13747, DUF4164, Domain of unknown function (DUF4164). This is
a family of short, approx 100 residue-long, bacterial
proteins of unknown function. There is several conserved
LE/LD sequence pairs.
Length = 89
Score = 28.0 bits (63), Expect = 2.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 78 RTNHNVKESLERTIATIQSVLER 100
N V L I TI++VL+R
Sbjct: 67 EANREVSRRLVAAIETIRAVLDR 89
Score = 28.0 bits (63), Expect = 2.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 318 RTNHNVKESLERTIATIQSVLER 340
N V L I TI++VL+R
Sbjct: 67 EANREVSRRLVAAIETIRAVLDR 89
>gnl|CDD|234423 TIGR03972, rSAM_TYW1, wyosine biosynthesis protein TYW1. Members
of this protein family are the archaeal protein TWY1, a
radical SAM protein that catalyzes the second step in
creating the wye-bases, wyosine and derivatives such as
wybutosine, for tRNA base modification [Protein
synthesis, tRNA and rRNA base modification].
Length = 297
Score = 29.5 bits (67), Expect = 2.8
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 23/119 (19%)
Query: 153 KMNDLMDYTHV---LTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMY-VP 208
K + ++ HV L+G P L ++ EL++E K T V NG V
Sbjct: 112 KWEEALEPKHVAISLSG---EPTLYPRLPELIEEFHKRGFTTFLV------TNGTRPDVL 162
Query: 209 EEVLPIYANELLSVADVICPNQFEAELLTKI--PIKDKA--SLLKTINVLHDRGIKTVV 263
E++ +S+ P++ E +I P+ A +L+++ +L + +TV+
Sbjct: 163 EKLEAEPTQLYVSLD---APDK---ETYKRICRPVIPDAWERILESLELLPSKSTRTVI 215
>gnl|CDD|132234 TIGR03190, benz_CoA_bzdN, benzoyl-CoA reductase, bzd-type, N
subunit. Members of this family are the N subunit of
one of two related types of four-subunit ATP-dependent
benzoyl-CoA reductase. This enzyme system catalyzes the
dearomatization of benzoyl-CoA, a common intermediate in
pathways for the degradation for a number of different
aromatic compounds, such as phenol and toluene.
Length = 377
Score = 29.2 bits (65), Expect = 3.9
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 298 DASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQS--VLERTAQSFPNKGSSKASV 355
D TG L+A+L +I + HN E L++ +A + S V +T F GS +
Sbjct: 185 DPKVTGVEALYASLTAQFIDKREHN--EMLKKVLAALPSRKVERKTGARFMTIGSENDDI 242
Query: 356 PAFVA 360
AF+A
Sbjct: 243 -AFMA 246
>gnl|CDD|234515 TIGR04234, seadorna_RNAP, seadornavirus RNA-directed RNA
polymerase. Members of this protein family are the
seadornavirus VP1 protein, the RNA-directed RNA
polymerase.
Length = 1144
Score = 29.4 bits (66), Expect = 3.9
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 44 SGSKTTVSINIPQFDASFTGT-----GDLFAALMLAYITRTNHNVKESLERTIATIQSVL 98
S S V+++ QFD+S G D + Y TN ++ + L+ ++ L
Sbjct: 557 SRSYCAVALDFSQFDSSQGGRISKAHADGVRRVANEYFPGTNTDLSDVLDLLELSMSKFL 616
Query: 99 ERTAQSFPNKGQYEVLGF--EVDAIN----TVQFSNH 129
T++S+ +Y+ G E + T Q N
Sbjct: 617 YITSESYERPLKYKSDGIVAEAAGVKSGELTTQLRNT 653
>gnl|CDD|234598 PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed.
Length = 125
Score = 27.9 bits (63), Expect = 4.3
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 9/31 (29%)
Query: 63 GTGDLFAALMLAYITRTNHNVKESLERTIAT 93
TG++ LM+A++ E+L +T+ T
Sbjct: 23 ETGEV---LMVAWMNE------EALAKTLET 44
Score = 27.9 bits (63), Expect = 4.3
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 9/31 (29%)
Query: 303 GTGDLFAALMLAYITRTNHNVKESLERTIAT 333
TG++ LM+A++ E+L +T+ T
Sbjct: 23 ETGEV---LMVAWMNE------EALAKTLET 44
>gnl|CDD|224165 COG1244, COG1244, Predicted Fe-S oxidoreductase [General function
prediction only].
Length = 358
Score = 28.9 bits (65), Expect = 4.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 155 NDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPV 198
L++ Y R P L S I E+++E KK P L + DPV
Sbjct: 250 GTLVEKLWRRGLY-RPPWLWS-IVEVLREAKKTGPMLRILSDPV 291
>gnl|CDD|213736 TIGR02773, addB_Gpos, helicase-exonuclease AddAB, AddB subunit.
DNA repair is accomplished by several different systems
in prokaryotes. Recombinational repair of
double-stranded DNA breaks involves the RecBCD pathway
in some lineages, and AddAB (also called RexAB) in
other. The AddA protein is conserved between the
firmicutes and the alphaproteobacteria, while the
partner protein is not. Nevertheless, the partner is
designated AddB in both systems. This model describes
the AddB protein as found Bacillus subtilis and related
species. Although the RexB protein of Streptococcus and
Lactococcus is considered to be orthologous,
functionally equivalent, and merely named differently,
all members of this protein family have a P-loop
nucleotide binding motif GxxGxGK[ST] at the N-terminus,
unlike RexB proteins, and a CxxCxxxxxC motif at the
C-terminus, both of which may be relevant to function
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1160
Score = 29.3 bits (66), Expect = 4.4
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 135 LKGKVITEQD-FDELIEGLKMNDLMDYTHV----LTGYCRSPQLLSKIGELVKELKKANP 189
L + + +D L E + ++ + + + +PQ S I L+K+ KK
Sbjct: 171 LADQYLDSEDYLTLLAEKIPQSEDIKGAEIYIDGFHSF--TPQEYSVIEALMKKAKKVTV 228
Query: 190 TL 191
+L
Sbjct: 229 SL 230
>gnl|CDD|233776 TIGR02198, rfaE_dom_I, rfaE bifunctional protein, domain I. RfaE
is a protein involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS inner
core biosynthesis. RfaE is a bifunctional protein in E.
coli, and separate proteins in some other genome. The
longer, N-terminal domain I (this family) is suggested
to act in D-glycero-D-manno-heptose 1-phosphate
biosynthesis, while domain II (TIGR02199) adds ADP to
yield ADP-D-glycero-D-manno-heptose [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 315
Score = 28.7 bits (65), Expect = 4.6
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 223 ADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELG--------PEKH 274
A +I PN+ EAE + + +L + ++ ++++ SE G H
Sbjct: 191 ATLITPNRKEAEAAVGACDTEAELVQAAEKLLEELDLEALLVTRSEKGMTLFTREGEPIH 250
Query: 275 LLGVASTV--VGGSKTTVSINIPQFDASFTGTGDLFAALMLA 314
+ A V V G+ TV I + L A LA
Sbjct: 251 IPAQAREVYDVTGAGDTV---IATLALALAAGASLEEACRLA 289
>gnl|CDD|224426 COG1509, KamA, Lysine 2,3-aminomutase [Amino acid transport and
metabolism].
Length = 369
Score = 28.4 bits (64), Expect = 7.1
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 163 VLTGYCRSPQLLSKIGELVKELKKAN--PTLMYVCDPVMGDNGRMYVP-EEVLPIYA 216
+L G P++L EL + L A P ++ D V G VP E L I
Sbjct: 258 LLRGVNDDPEVL---KELSRALFDAGVKPYYLHQLDLVQG-AAHFRVPIAEGLQIVE 310
>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and
metabolism].
Length = 212
Score = 28.0 bits (63), Expect = 7.1
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 229 NQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSS 267
E + + A + + L G K V+IS
Sbjct: 66 EVLEEVREEFLRLTPGA--EELVAALKAAGAKVVIISGG 102
>gnl|CDD|129629 TIGR00538, hemN, oxygen-independent coproporphyrinogen III oxidase.
This model represents HemN, the oxygen-independent
coproporphyrinogen III oxidase that replaces HemF
function under anaerobic conditions. Several species,
including E. coli, Helicobacter pylori, and Aquifex
aeolicus, have both a member of this family and a member
of another, closely related family for which there is no
evidence of coproporphyrinogen III oxidase activity.
Members of this family have a perfectly conserved motif
PYRT[SC]YP in a region N-terminal to the region of
homology with the related uncharacterized protein
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 455
Score = 28.2 bits (63), Expect = 8.2
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 80 NHNVKESLERTIATIQSVLERTAQSFPNKGQYEVLGFEVDAINTVQ---FSNHSGYGHL- 135
+H K E +A + L R Q + + ++LGF V +I+ + N
Sbjct: 286 DHFAKPDDELAVAQRKGELHRNFQGYTTQKDTDLLGFGVTSISMLGDCYAQNQKTLKQYY 345
Query: 136 -----------KGKVITEQDF--DELIEGLKMNDLMDYTHV 163
+G +++ D E+I+ L N +DY+ +
Sbjct: 346 KAVDEGGNPVERGIALSQDDCIRREVIKSLMCNFKLDYSKI 386
>gnl|CDD|238917 cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in
bacteria and archaea, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time.
Length = 279
Score = 28.0 bits (63), Expect = 8.4
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 38/144 (26%)
Query: 179 ELVKELKKANPTLMYVCDPVMGDNGRMYVP---EEVLPIYANELLSVADVICPNQFEAEL 235
EL +EL T+ + DP G+ EE+ I L AD++ N +EAEL
Sbjct: 140 ELARELAAGGITVSF--DP-----GQELPRLSGEELEEI-----LERADILFVNDYEAEL 187
Query: 236 LTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIP 295
L + + G++ VV++ LGP+ + V + +P
Sbjct: 188 L----KERTGLSEAELAS----GVRVVVVT---LGPK------GAIVFEDGEEVEVPAVP 230
Query: 296 ---QFDASFTGTGDLF-AALMLAY 315
D TG GD F A +
Sbjct: 231 AVKVVDT--TGAGDAFRAGFLYGL 252
>gnl|CDD|224319 COG1401, McrB, GTPase subunit of restriction endonuclease [Defense
mechanisms].
Length = 601
Score = 28.2 bits (63), Expect = 8.5
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 10/98 (10%)
Query: 155 NDLMDYTHVLTGYCRSPQLLSKIGELVKE-LKKANPTLMYVCDPVMGDNGRMYVPEEVLP 213
N+ ++ + ++G E L K + + + D + VP +
Sbjct: 183 NNYRRLEGLVDISILKWNFIGELGTSEIELLSKEDGEELE---KYLPDVDTLNVPIGTIE 239
Query: 214 IYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTI 251
EL +I K L K
Sbjct: 240 TLLKELKKKPFLIL------LGGALASGTGKTKLGKEF 271
>gnl|CDD|238078 cd00134, PBPb, Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as,
amino acids, peptides, sugars, vitamins and inorganic
ions. PBPs have two cell-membrane translocation
functions: bind substrate, and interact with the
membrane bound complex. A diverse group of periplasmic
transport receptors for lysine/arginine/ornithine (LAO),
glutamine, histidine, sulfate, phosphate, molybdate, and
methanol are included in the PBPb CD.
Length = 218
Score = 27.7 bits (62), Expect = 8.7
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 108 KGQYEVLGFEVDAINTVQFSNHSGYGHLKGKV-ITEQDFDELIEGLK 153
G+ GF+VD + L KV E D+D LI LK
Sbjct: 18 NGELT--GFDVDLAKAIA-------KELGVKVKFVEVDWDGLITALK 55
>gnl|CDD|180339 PRK05988, PRK05988, formate dehydrogenase subunit gamma; Validated.
Length = 156
Score = 27.2 bits (61), Expect = 8.9
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 206 YVPEEVLPIYANEL-LSVADV 225
YVPE+ +P+ A L LS A+V
Sbjct: 38 YVPEDAVPVIAEALNLSRAEV 58
>gnl|CDD|237493 PRK13762, PRK13762, tRNA-modifying enzyme; Provisional.
Length = 322
Score = 27.9 bits (63), Expect = 9.4
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 153 KMNDLMDYTHV---LTGYCRSPQLLSKIGELVKELKK 186
K + M+ HV L+G P L + EL++E K
Sbjct: 123 KFEEAMEPKHVAISLSG---EPTLYPYLPELIEEFHK 156
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.365
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,571,989
Number of extensions: 1668699
Number of successful extensions: 1900
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1862
Number of HSP's successfully gapped: 76
Length of query: 360
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 262
Effective length of database: 6,590,910
Effective search space: 1726818420
Effective search space used: 1726818420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)