RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11349
(360 letters)
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal
5'-phosphate, vitamin B6, phosphorylation, transferase;
2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Length = 283
Score = 248 bits (635), Expect = 3e-81
Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 6/232 (2%)
Query: 114 LGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMND-LMDYTHVLTGYCRSPQ 172
G V A+ TV SN Y G I ++ F + L+ D L V TGY +
Sbjct: 42 NGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTAS 101
Query: 173 LLSKIGELVKELKKANPTLMYVCDPVMGD-NGRMYVPEEVLPIYANELLSVADVICPNQF 231
+ + E + L+K +P L+ + DPV+GD + +YV ++ Y LL +A I PN F
Sbjct: 102 QIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIF 161
Query: 232 EAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVS 291
E E+LT +D S + L +K VV++S+ E VV + +
Sbjct: 162 ELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVVTSASGNEEN---QEMQVVVVTADSVNV 218
Query: 292 INIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQ 343
I+ + GTGDLF A +++ + + + +++ R + V+ T Q
Sbjct: 219 ISHSRVKTDLKGTGDLFCAQLISGLLK-GKALTDAVHRAGLRVLEVMRYTQQ 269
Score = 57.3 bits (139), Expect = 1e-09
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 44 SGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQ 103
+ + I+ + GTGDLF A +++ + + + +++ R + V+ T Q
Sbjct: 211 VTADSVNVISHSRVKTDLKGTGDLFCAQLISGLLK-GKALTDAVHRAGLRVLEVMRYTQQ 269
Query: 104 SFPNKGQYE 112
E
Sbjct: 270 H----ESDE 274
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION,
transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A*
3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A*
1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A*
1yhj_A*
Length = 312
Score = 244 bits (624), Expect = 3e-79
Identities = 115/270 (42%), Positives = 176/270 (65%), Gaps = 21/270 (7%)
Query: 91 IATIQSVLER-----TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDF 145
+ +IQS + R A +FP +VLGFE+DA+N+VQFSNH+GY H KG+V+ +
Sbjct: 7 VLSIQSHVIRGYVGNRAATFP----LQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDEL 62
Query: 146 DELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDN--- 202
EL EGL++N++ Y +VLTGY R L+ + ++V+ELK+ NP L+YVCDPV+GD
Sbjct: 63 QELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDG 122
Query: 203 -GRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKT 261
G MYVPE++LP+Y +++ +AD+I PNQFEAELL+ I + L+ +++LH G T
Sbjct: 123 EGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDT 182
Query: 262 VVISSSELGPEK---HLLGVASTVVGGSK-----TTVSINIPQFDASFTGTGDLFAALML 313
VVI+SS+L + +L+ + S + ++I + DA F GTGDLFAA++L
Sbjct: 183 VVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAMLL 242
Query: 314 AYITRTNHNVKESLERTIATIQSVLERTAQ 343
A+ + +N+K + E+T++T+ VL+RT Q
Sbjct: 243 AWTHKHPNNLKVACEKTVSTLHHVLQRTIQ 272
Score = 57.5 bits (139), Expect = 2e-09
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 32 LTCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTI 91
+ ++ S + ++I + DA F GTGDLFAA++LA+ + +N+K + E+T+
Sbjct: 201 VLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTV 260
Query: 92 ATIQSVLERTAQ 103
+T+ VL+RT Q
Sbjct: 261 STLHHVLQRTIQ 272
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for
structural genomics of infec diseases, csgid,
transferase; HET: MSE; 1.89A {Yersinia pestis} PDB:
1td2_A* 1vi9_A*
Length = 289
Score = 233 bits (597), Expect = 2e-75
Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 4/235 (1%)
Query: 113 VLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMND-LMDYTHVLTGYCRSP 171
+G V +NTVQFSNH+ YGH G V+ ++++G+ D L D VL+GY SP
Sbjct: 30 RMGVNVWPLNTVQFSNHTQYGHWTGCVMPASHLTDIVQGIADIDRLKDCDAVLSGYIGSP 89
Query: 172 QLLSKIGELVKELKKANPTLMYVCDPVMGDNGR-MYVPEEVLPIYANELLSVADVICPNQ 230
+ S I V ++K+ANP Y CDPVMG + V V + NE L +D+I PN
Sbjct: 90 EQGSHILAAVAQVKQANPDAWYFCDPVMGHPEKGCIVAPGVAEFFCNEALPASDMIAPNL 149
Query: 231 FEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSEL-GPEKHLLGVASTVVGGSKTT 289
E E L+ +++ ++ L RG K V++ G + +
Sbjct: 150 LELEQLSGERVENVEQAVQVARSLCARGPKVVLVKHLSRAGYHADCFEMLLVTADDAWHI 209
Query: 290 VSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQS 344
+ G GDL + L+L + + + ++LE A + V+ +T +
Sbjct: 210 CRPLVDFGKRQPVGVGDLTSGLLLVNLLK-GEPLDKALEHVTAAVYEVMLKTQEM 263
Score = 48.9 bits (117), Expect = 8e-07
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 44 SGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQ 103
+ + G GDL + L+L + + + ++LE A + V+ +T +
Sbjct: 204 DDAWHICRPLVDFGKRQPVGVGDLTSGLLLVNLLK-GEPLDKALEHVTAAVYEVMLKTQE 262
Query: 104 SFPNKGQYE 112
G+YE
Sbjct: 263 M----GEYE 267
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE PXL; 2.00A {Bacteroides
thetaiotaomicron} PDB: 3mbj_A*
Length = 291
Score = 232 bits (595), Expect = 5e-75
Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 10/235 (4%)
Query: 113 VLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQ 172
+GF+V + T SNH+ Y +T+ + ++I K ++ + + TGY SP+
Sbjct: 33 SMGFQVCPLPTAVLSNHTQYPGFSFLDLTD-EMPKIIAEWKKLEV-QFDAIYTGYLGSPR 90
Query: 173 LLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYA-NELLSVADVICPNQF 231
+ + + +K+ + P + V DPV+GDNGR+Y ++ + L++ ADVI PN
Sbjct: 91 QIQIVSDFIKDFR--QPDSLIVADPVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLT 148
Query: 232 EAELLTKIPIKDKAS---LLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKT 288
E L P K ++ L + + +L D+G + V+I+S + E H V + G++
Sbjct: 149 ELFYLLDEPYKADSTDEELKEYLRLLSDKGPQVVIITSVPVHDEPHKTSVYAYNRQGNRY 208
Query: 289 TVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQ 343
+ P A + GTGD F +++ + + ++ +L+R I + T
Sbjct: 209 WK-VTCPYLPAHYPGTGDTFTSVITGSLMQ-GDSLPMALDRATQFILQGIRATFG 261
Score = 58.8 bits (143), Expect = 5e-10
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 41 LIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 100
+ P A + GTGD F +++ + + ++ +L+R I +
Sbjct: 200 AYNRQGNRYWKVTCPYLPAHYPGTGDTFTSVITGSLMQ-GDSLPMALDRATQFILQGIRA 258
Query: 101 TAQSFPNKGQYEVLGFE 117
T E + E
Sbjct: 259 TFGY--EYDNREGILLE 273
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A
{Trypanosoma brucei}
Length = 300
Score = 232 bits (592), Expect = 2e-74
Identities = 96/280 (34%), Positives = 164/280 (58%), Gaps = 20/280 (7%)
Query: 88 ERTIATIQSVLER-----TAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITE 142
E+T+ +IQS + A +FP ++ GF+VD INTV SNHSGY ++G ++
Sbjct: 3 EKTVLSIQSFVTHGYVGNKAATFP----LQLHGFDVDGINTVCLSNHSGYPVIRGHRMSL 58
Query: 143 QDFDELIEGLKMND-LMDYTHVLTGYCRSPQLLSKIGELVKELKK----ANPTLMYVCDP 197
Q++DEL+EG++ N+ L +Y ++LTGY + ++ +I + +KE+++ + L ++CDP
Sbjct: 59 QEYDELMEGVRANNFLSNYRYILTGYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDP 118
Query: 198 VMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDR 257
VMGD+G MY +EVL Y EL+ +AD++ PN FEA LL+ + + D +S + + H+
Sbjct: 119 VMGDDGIMYCKKEVLDAY-RELVPLADIVTPNYFEASLLSGVTVNDLSSAILAADWFHNC 177
Query: 258 GIKTVVISSSELGPEKHLLGVASTVVGGSKTTV---SINIPQFDASFTGTGDLFAALMLA 314
G+ V+I S L +V GS+ V S +P + +TGTGD+FAA +LA
Sbjct: 178 GVAHVIIKSFREQENPTHLRFLYSVKEGSEAAVRRFSGVVPYHEGRYTGTGDVFAACLLA 237
Query: 315 YITRTNHNVKESLERTIATIQSVLERTAQSFPNKGSSKAS 354
+ +H + ++ +++A +Q ++ T + + SS S
Sbjct: 238 FS--HSHPMDVAIGKSMAVLQELIIATRKEGGDGKSSLKS 275
Score = 50.6 bits (121), Expect = 3e-07
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 51 SINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQ 103
S +P + +TGTGD+FAA +LA+ +H + ++ +++A +Q ++ T +
Sbjct: 214 SGVVPYHEGRYTGTGDVFAACLLAFS--HSHPMDVAIGKSMAVLQELIIATRK 264
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB:
3hyo_A* 3ibq_A*
Length = 282
Score = 89.9 bits (224), Expect = 8e-21
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 17/184 (9%)
Query: 163 VLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMY--VPEEVLPIYANELL 220
L GY S L +I +++ + V DPV+GD G++Y ++ + +L+
Sbjct: 78 ALIGYVGSVALCQQITTYLEQQTLSL----LVVDPVLGDLGQLYQGFDQDYVAAMR-QLI 132
Query: 221 SVADVICPNQFEAELLTKIPIKDKAS---LLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
ADVI PN EA LLT P + +L + G V+ +G
Sbjct: 133 QQADVILPNTTEAALLTGAPYQVTPDLEVILPALQAQLKTGAHAVITD----VQRADQIG 188
Query: 278 VASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSV 337
A + + + + GTGD AA++ + R + + +L R +
Sbjct: 189 CA--WLDEAGHVQYCGARRLPGHYNGTGDTLAAVIAGLLGR-GYPLAPTLARANQWLNMA 245
Query: 338 LERT 341
+ T
Sbjct: 246 VAET 249
Score = 32.1 bits (74), Expect = 0.20
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 55 PQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKGQYEV 113
+ + GTGD AA++ + R + + +L R + + T + + +
Sbjct: 204 RRLPGHYNGTGDTLAAVIAGLLGR-GYPLAPTLARANQWLNMAVAET----IAQNRTDD 257
>2fv7_A Ribokinase; structural genomics, structural genomics consort
transferase; HET: ADP; 2.10A {Homo sapiens} SCOP:
c.72.1.1
Length = 331
Score = 65.6 bits (161), Expect = 3e-12
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 22/148 (14%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
+ +++DV C N+ EAE+LT + + A + VL RG + V+I+ LG E G
Sbjct: 197 QFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIIT---LGAE----G 249
Query: 278 VASTVVGGSKTTVSINIPQFDASF---TGTGDLF-AALMLAYITRTNHNVKESLER--TI 331
VV +IP TG GD F AL N ++++ L R I
Sbjct: 250 C---VVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRSNFI 306
Query: 332 ATIQSVLERTAQ-SFPNKGSSKASVPAF 358
A + SV Q S+P K +P
Sbjct: 307 AAV-SVQAAGTQSSYP----YKKDLPLT 329
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure
initiative, modified lysin, structural genomics; HET:
BGC; 2.45A {Clostridium perfringens}
Length = 328
Score = 64.9 bits (159), Expect = 6e-12
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 12/113 (10%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
L+ I PN+ EAE+L PI D L+K N GIK V IS L
Sbjct: 178 HLIKDFHTIKPNRHEAEILAGFPITDTDDLIKASNYFLGLGIKKVFIS----------LD 227
Query: 278 VASTVVGGSKTTVSINIPQFDA-SFTGTGDLFAALMLAYITRTNHNVKESLER 329
+ I + D + TG GD F A + +++ ++
Sbjct: 228 ADGIFYNDGVSCGKIKATEVDVKNVTGAGDSFVAGLGYGYMN-KMPIEDIVKF 279
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Length = 304
Score = 62.5 bits (153), Expect = 3e-11
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 19/137 (13%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
ELLS+ D+I PN+ EAELL+ I + ++ S+ N GIKTV+I+ LG + G
Sbjct: 175 ELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLIT---LGKQ----G 227
Query: 278 VASTVVGGSKTTVSINIPQFDASF---TGTGDLFAALMLAYITRTNHNVKESLER--TIA 332
+++ I + + T GD F ++ + ++ N+ ++++ +
Sbjct: 228 TY--FATKNQSQH---IEAYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKAS 282
Query: 333 TIQSVLERTAQ-SFPNK 348
++ +V + AQ S P
Sbjct: 283 SL-TVQKHGAQASIPLL 298
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding,
transferase; HET: RIB ADP; 1.84A {Escherichia coli}
SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Length = 309
Score = 61.3 bits (150), Expect = 8e-11
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVI 264
ELL++ D+I PN+ EAE LT I +++ K VLH++GI+TV+I
Sbjct: 176 ELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLI 222
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc
initiative, PSI, joint center for structural genomics,
TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Length = 311
Score = 60.6 bits (148), Expect = 2e-10
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVI 264
E+ D + PN+ E E L+K + ++ K + G+K V++
Sbjct: 179 EIFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIV 225
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 7e-09
Identities = 63/387 (16%), Positives = 109/387 (28%), Gaps = 114/387 (29%)
Query: 38 ELKLIQSGSKTTVSINIPQF--DASFTGTGDLFAALM----LAYITRTNHNVKESLERTI 91
E Q K +S+ F + D+ +++ + +I + V R
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV-SGTLRLF 68
Query: 92 ATIQSVLERTAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEG 151
T+ S E Q F EV IN Y L + TEQ ++
Sbjct: 69 WTLLSKQEEMVQKFVE---------EVLRIN---------YKFLMSPIKTEQRQPSMMTR 110
Query: 152 L---KMNDLMDYTHVLTGY--CRSPQLLSKIGELVKELKKANPTLMY------------- 193
+ + + L + V Y R Q K+ + + EL+ A L+
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 194 VC-----DPVMGDN------GRMYVPEEVLPIYAN-------ELLSVADVICP-----NQ 230
VC M PE VL + S +D +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 231 FEAELLTKIPIKD-KASLL--------KTINVLHDRGIKTVVISSSELGPEKHLLGVAST 281
+AEL + K + LL K N + K ++ + + V
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFK--------QVTDF 280
Query: 282 VVGGSKTTVSINIPQ--FD--------ASFTGT--GDL--------------FAALMLAY 315
+ + T +S++ + DL A +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 316 ITRTN---HNVKESLERTIATIQSVLE 339
+ + H + L I + +VLE
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLE 367
Score = 48.7 bits (115), Expect = 2e-06
Identities = 48/311 (15%), Positives = 98/311 (31%), Gaps = 84/311 (27%)
Query: 19 VIATQILQRDPSALTCKEKE---LKLIQSGSKTTVSINI----PQFDASFTGTGDLFAAL 71
+A + + + L L S TV + Q D ++T D + +
Sbjct: 165 WVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 72 MLAYITRTNHNVKESLERTIATIQS-----VL-----ERTAQSFPNKGQYEVL----GFE 117
L H+++ L R + + VL + +F + +L +
Sbjct: 224 KLRI-----HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK--ILLTTRFKQ 276
Query: 118 V-DAINTVQFSNHSGYGHLKGKVITEQDFDELIE---GLKMNDLMDYTHVLTGYCRSPQL 173
V D ++ ++ S H +T + L+ + DL VLT +P+
Sbjct: 277 VTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPR--EVLTT---NPRR 329
Query: 174 LSKIGELVKE-LKKANPTLMYVCDPVM------------GDNGRMY-----------VPE 209
LS I E +++ L + CD + + +M+ +P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 210 EVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLK------TINVLHDRGIKTVV 263
+L + ++ +L SL++ TI+ + ++ V
Sbjct: 390 ILLSLIWFDV----IKSDVMVVVNKLHKY-------SLVEKQPKESTIS-IPSIYLELKV 437
Query: 264 ISSSELGPEKH 274
+E H
Sbjct: 438 KLENE--YALH 446
Score = 35.2 bits (80), Expect = 0.038
Identities = 41/266 (15%), Positives = 77/266 (28%), Gaps = 80/266 (30%)
Query: 114 LGFEVDAINTVQFSNHSGYGHLKGKVITEQDF-DELIEGLKMNDLMDYT----------H 162
+ FE Q+ ++ F D ++ D+ D H
Sbjct: 7 MDFET---GEHQYQY--------KDIL--SVFEDAFVDNFDCKDVQDMPKSILSKEEIDH 53
Query: 163 VLTGYCRSPQ-----------LLSKIGELVKE-----LKKANPTLM----YVC-DPVMGD 201
++ S LLSK E+V++ L+ LM P M
Sbjct: 54 II----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-- 107
Query: 202 NGRMYVPEEVLPIYANELLSVADVICP-NQFEAELLTKIPIKDKASLLKTIN--VLH-DR 257
RMY+ + L + V N + K ++ L+ ++
Sbjct: 108 MTRMYIE------QRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVL 159
Query: 258 GI-KTVVISSSELGPEKHLLGVASTV----VGGSKTTVSINIP------QFDASFTGTGD 306
G KT V K + + + + ++ Q D ++T D
Sbjct: 160 GSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 307 LFAALMLAYITRTNHNVKESLERTIA 332
+ + L H+++ L R +
Sbjct: 219 HSSNIKLRI-----HSIQAELRRLLK 239
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis,
ribokinase family, phosphorylati structural genomics;
2.05A {Thermus thermophilus} SCOP: c.72.1.2
Length = 258
Score = 53.6 bits (130), Expect = 2e-08
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 15/101 (14%)
Query: 176 KIG--------ELVKELKKANPTLMYVCDPVM----GDNGRMYVPEEVLPIYANELLSVA 223
K G E V E + V DPVM GD + +E L +A
Sbjct: 75 KTGALGDAAIVEAVAEAVRRFGVRPLVVDPVMVAKSGDP---LLAKEAAAALKERLFPLA 131
Query: 224 DVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVI 264
D++ PN+ EAE L PI+ + L G K V++
Sbjct: 132 DLVTPNRLEAEALLGRPIRTLKEAEEAAKALLALGPKAVLL 172
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 8e-08
Identities = 60/436 (13%), Positives = 115/436 (26%), Gaps = 180/436 (41%)
Query: 9 RQEVIRT---TLVVIATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDASFTGTG 65
+E+I+ ++ ++ SAL + + G+ V+I F G G
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSAL------FRAVGEGNAQLVAI--------FGGQG 164
Query: 66 ---DLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKGQYEVLGFEVDA-- 120
D F L Y T + I L ++ + + G +
Sbjct: 165 NTDDYFEELRDLYQT-----YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 121 ---------------------INTVQFSNH------SGY-------------GHLKGKVI 140
I +Q +++ G+ GH +G ++
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG-LV 278
Query: 141 ---------TEQDFDELI-EGLKM-------------------NDLMDYTHVLTGYCRSP 171
+ + F + + + + + L D G SP
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV-PSP 337
Query: 172 QL----LSKIGELVKELKKANPTLMYVCDPVMGD------NG-RMYV---PEEVLPIYAN 217
L L++ ++ + K N L P NG + V P + L
Sbjct: 338 MLSISNLTQ-EQVQDYVNKTNSHL-----PAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKA----------------SLLK--TINVLHDRGI 259
L +Q ++IP ++ LL + + D
Sbjct: 392 TLRKAKAPSGLDQ------SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 260 KTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDASFTGTG-DLFAALMLAYITR 318
V ++ ++ IP +D T G DL R
Sbjct: 446 NNVSFNAKDIQ-----------------------IPVYD---TFDGSDL----------R 469
Query: 319 T-NHNVKESLERTIAT 333
+ ++ E + I
Sbjct: 470 VLSGSISERIVDCIIR 485
Score = 48.9 bits (116), Expect = 2e-06
Identities = 65/384 (16%), Positives = 126/384 (32%), Gaps = 117/384 (30%)
Query: 20 IATQILQRDPSALTCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDL--FAALMLAYIT 77
+++ + +PS + ++ L L + +F+ + D+ AA +L
Sbjct: 68 VSSLV---EPSKVGQFDQVLNLC-----------LTEFENCYLEGNDIHALAAKLLQEND 113
Query: 78 RTNHNVKESLE---RTIATIQSVLERTAQS--FP--NKGQ---YEVLGFEVDAINTVQFS 127
T KE ++ + ++ + S F +G + G
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG------------ 161
Query: 128 NHSGYGHLKGKVITEQDFDELIEGLKMNDLMD-YTHVLTGYC-RSPQLLSKIGELVKELK 185
G G T+ F+EL + L Y ++ S + LS EL++
Sbjct: 162 ---GQG------NTDDYFEELRD------LYQTYHVLVGDLIKFSAETLS---ELIRTTL 203
Query: 186 KANPTLMYVCDPVMG--DNGRMYVPEEVLPI-YANELLSVADVICP----NQF-----EA 233
A + ++ +N P Y LLS+ + CP Q A
Sbjct: 204 DAEKVFTQGLN-ILEWLEN-----PSNTPDKDY---LLSIP-ISCPLIGVIQLAHYVVTA 253
Query: 234 ELLTKIPIKDKASLLKTINVLHDRGIKT-VVISSSELGPE------KHL-----LGVAST 281
+LL P + S LK H +G+ T V I+ ++ K + +GV
Sbjct: 254 KLLGFTP-GELRSYLKGATG-HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 282 VVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERT 341
+ T++ +I + D+ G + ML+ + +L + +Q + +T
Sbjct: 312 EAYPN-TSLPPSILE-DSLENNEGV--PSPMLS--------IS-NLTQ--EQVQDYVNKT 356
Query: 342 AQSFPNKGSSKASV-----P-AFV 359
P + + V
Sbjct: 357 NSHLP--AGKQVEISLVNGAKNLV 378
Score = 48.5 bits (115), Expect = 3e-06
Identities = 54/296 (18%), Positives = 93/296 (31%), Gaps = 103/296 (34%)
Query: 87 LERTIATIQSVLERTAQSFPNKGQYEVLGFEVDAI---NTVQFSNHSGYGHLKGKVITEQ 143
L +T Q V R F + GF + I N V + H +G KGK I E
Sbjct: 1635 LYKTSKAAQDVWNRADNHF-----KDTYGFSILDIVINNPVNLTIH--FGGEKGKRIRE- 1686
Query: 144 DFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVK---------ELKK-AN--PTL 191
++ M + ++ G ++ ++ +I E L P L
Sbjct: 1687 NYSA----------MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 192 M---YVCDPVMGDNGRMYVPE----------EVLPIY-ANELLSVADVICPNQFEAELLT 237
+ G +P E Y A L S+ADV
Sbjct: 1737 TLMEKAAFEDLKSKG--LIPADATFAGHSLGE----YAA--LASLADV------------ 1776
Query: 238 KIPIKDKASLLKTINVLHDRGI-KTVVISSSELGPEKH-LLGV--ASTVVGGSKTTVSIN 293
+ I+ + V+ RG+ V + ELG + ++ + S+ +
Sbjct: 1777 -MSIES------LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 294 IPQFDASFTGTGDLFAALMLAYITRTNHNV----------KESLERTIATIQSVLE 339
+ + TG L + + N+NV +L+ T+ +VL
Sbjct: 1830 VERVGKR---TGWL---VEIV-----NYNVENQQYVAAGDLRALD----TVTNVLN 1870
Score = 33.1 bits (75), Expect = 0.16
Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 24/106 (22%)
Query: 87 LERTIATIQSVLERTAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLK--GKVITEQD 144
L I L + SF K + V + G L+ I+E+
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKD----IQIPV-------YDTFDGS-DLRVLSGSISERI 479
Query: 145 FDELIEGLKMN----DLMDYTHVLT-GYCRSPQLLSKIGELVKELK 185
D +I L + TH+L G P S +G L K
Sbjct: 480 VDCIIR-LPVKWETTTQFKATHILDFG----PGGASGLGVLTHRNK 520
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199,
PSI-2, PR structure initiative 2; 1.86A {Agrobacterium
tumefaciens str}
Length = 317
Score = 52.2 bits (126), Expect = 9e-08
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVI 264
L D++ N+ EA LT ++ N+L G+ V+
Sbjct: 178 AALGDIDILFMNEAEARALTGETAENVRDW---PNILRKAGLSGGVV 221
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12} PDB:
3in1_A*
Length = 325
Score = 51.8 bits (125), Expect = 1e-07
Identities = 37/157 (23%), Positives = 54/157 (34%), Gaps = 35/157 (22%)
Query: 179 ELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTK 238
E+ + K + D + E L E LS D + PN EA+LLT
Sbjct: 157 EIFTQAKARQMIICA-------DMIK-PRLNETLDD-ICEALSYVDYLFPNFAEAKLLTG 207
Query: 239 IPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQF- 297
D+ + G+KTVVI G + G + G T +P
Sbjct: 208 KETLDEI-----ADCFLACGVKTVVIK---TGKD----GCF--IKRGDMTMK---VPAVA 250
Query: 298 -----DASFTGTGDLFAALMLAYITRTNHNVKESLER 329
D G GD FA+ +A + N++E
Sbjct: 251 GITAIDT--IGAGDNFASGFIAALLE-GKNLRECARF 284
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase,
hyperthermophIle, ribokinase ribokinase fold; 1.70A
{Methanococcus jannaschii} PDB: 2c49_A
Length = 302
Score = 50.3 bits (121), Expect = 3e-07
Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 25/116 (21%)
Query: 217 NELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLL 276
E++ + + N+ E E + + + L+ + ++++ G +
Sbjct: 174 LEIIEHTNFLFMNKHEFERASNLLNFEIDDYLE--------RVDALIVT---KGSK---- 218
Query: 277 GVASTVVGGSKTTVSINIPQFDASF----TGTGDLFAALMLAYITRTNHNVKESLE 328
G + K I IP A TG GD + A L+ + +++++
Sbjct: 219 GS--VIYTKDKK---IEIPCIKAGKVIDPTGAGDSYRAGFLSAYVK-GYDLEKCGL 268
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase;
2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB:
1tz3_A* 1tz6_A*
Length = 339
Score = 50.3 bits (121), Expect = 3e-07
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 24/157 (15%)
Query: 179 ELVKELKKANPTLMYVCDPVMGDNGRMYV---PEEVLPIYANELLSVADVICPNQFEAEL 235
E + +++A +++ D N R + +E+ + ++A + + E
Sbjct: 163 EGARRMREAGGYVLF--DV----NLRSKMWGNTDEIPELI-ARSAALASICKVSADELCQ 215
Query: 236 LTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIP 295
L+ + L D G T +IS LG + G G + +
Sbjct: 216 LS-----GASHWQDARYYLRDLGCDTTIIS---LGAD----GALLITAEGEFHFPAPRVD 263
Query: 296 QFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIA 332
D TG GD F +L ++R N L I+
Sbjct: 264 VVDT--TGAGDAFVGGLLFTLSRANCWDHALLAEAIS 298
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase
superfamily, transferase; HET: ADP; 2.80A {Bacillus
subtilis}
Length = 271
Score = 49.8 bits (120), Expect = 4e-07
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 16/102 (15%)
Query: 176 KIG--------ELVKELKKANPTLMYVCDPVM----GDNGRMYVPEEVLPIYANELLSVA 223
K G EL + K V DPVM + + E +L +A
Sbjct: 79 KTGMLPTVDIIELAAKTIKEKQLKNVVIDPVMVCKGANE---VLYPEHAQALREQLAPLA 135
Query: 224 DVICPNQFEAELLTKI-PIKDKASLLKTINVLHDRGIKTVVI 264
VI PN FEA L+ + +K +++ +H G + VVI
Sbjct: 136 TVITPNLFEASQLSGMDELKTVDDMIEAAKKIHALGAQYVVI 177
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein
structure initiative, joint center for structural G
transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Length = 298
Score = 48.6 bits (116), Expect = 1e-06
Identities = 24/156 (15%), Positives = 57/156 (36%), Gaps = 29/156 (18%)
Query: 179 ELVKELKKANPTLMYVCDP----VMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAE 234
+L+ L++ L D + +N ++ + + + L D+ + EAE
Sbjct: 136 DLIPVLRRKVMFLSA--DAQGFVRVPENEKLVYRDWEMK---EKYLKYLDLFKVDSREAE 190
Query: 235 LLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSI-N 293
LT L ++ ++ G K ++ + V G+ S +
Sbjct: 191 TLTGTN-----DLRESCRIIRSFGAKIILAT----------HASGVIVFDGNFYEASFRS 235
Query: 294 IPQFDASFTGTGDLF-AALMLAYITRTNHNVKESLE 328
TG GD AA ++ ++ + +++++ +
Sbjct: 236 WSLEGR--TGRGDTCTAAFLVGFVFKK-MSIEKATK 268
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II,
NYSGXRC, struc genomics, protein structure initiative;
HET: AMP; 1.88A {Chlorobaculum tepidum}
Length = 313
Score = 48.3 bits (115), Expect = 2e-06
Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 23/141 (16%)
Query: 195 CDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVL 254
V+ D ++ + + ++L+ DV N EA LL+ +L+KT ++
Sbjct: 143 PKLVVCDTMNFWIEGKPEELK--KVLARVDVFIVNDSEARLLS-----GDPNLVKTARII 195
Query: 255 HDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQF--DASF--TGTGDLFAA 310
+ G KT++I E G + + + P F ++ + TG GD FA
Sbjct: 196 REMGPKTLIIKKGEHG---------ALLFTDNGI---FAAPAFPLESIYDPTGAGDTFAG 243
Query: 311 LMLAYITRTNHNVKESLERTI 331
+ ++ R + + + + +
Sbjct: 244 GFIGHLARCGNTSEAEMRKAV 264
Score = 28.3 bits (63), Expect = 4.4
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 62 TGTGDLFAALMLAYITRTNHNVKESLERTI 91
TG GD FA + ++ R + + + + +
Sbjct: 235 TGAGDTFAGGFIGHLARCGNTSEAEMRKAV 264
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase
(THID), thiaminase II, transferase; 2.68A {Saccharomyces
cerevisiae}
Length = 550
Score = 46.3 bits (110), Expect = 1e-05
Identities = 27/193 (13%), Positives = 66/193 (34%), Gaps = 31/193 (16%)
Query: 177 IGELVKELKKANPTLM-YVCDPVM----GDNGRMYVPEEVLPIYANELLSVADVICPNQF 231
I L ++L + V DPV+ G + ++++ + ++ AD++ PN
Sbjct: 105 IEVLHEKLLQLGENRPKLVVDPVLVATSGSS---LAGKDIVSLITEKVAPFADILTPNIP 161
Query: 232 EAELLT--KIPIKDKASLLKTINVLHDR-GIKTVVISSSELGPEK--HLLGVAST----- 281
E L + + + + L +++ K H+
Sbjct: 162 ECYKLLGEERKVNGLQDIFQIAKDLAKITKCSNILV--------KGGHIPWNDEKEKYIT 213
Query: 282 ---VVGGSKTTVSINIPQFDASFT-GTGDLFAALMLAYITRTNHNVKESLERTIATIQSV 337
+G + + + + T GTG A+ + + + R +++ +S+ I +Q+
Sbjct: 214 DVLFLGAEQKFIIFKGNFVNTTHTHGTGCTLASAIASNLAR-GYSLPQSVYGGIEYVQNA 272
Query: 338 LERTAQSFPNKGS 350
+
Sbjct: 273 VAIGCDVTKETVK 285
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family,
phophorylation, transferase; 2.30A {Salmonella
typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Length = 288
Score = 45.5 bits (109), Expect = 1e-05
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 18/103 (17%)
Query: 176 KIG-----ELV----KELKKANPTLMYVCDPVM----GDNGRMYVPEEVLPIYANELLSV 222
KIG ++V + L++ + V D VM GD + + LL
Sbjct: 99 KIGMLAETDIVEAVAERLQRHHVR-NVVLDTVMLAKSGDP---LLSPSAIETLRVRLLPQ 154
Query: 223 ADVICPNQFEAE-LLTKIPIKDKASLLKTINVLHDRGIKTVVI 264
+I PN EA LL + + +L L G + V++
Sbjct: 155 VSLITPNLPEAAALLDAPHARTEQEMLAQGRALLAMGCEAVLM 197
>3ktn_A Carbohydrate kinase, PFKB family; PFKB
family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II,
NYSGXRC,, structural genomics; 2.26A {Enterococcus
faecalis}
Length = 346
Score = 45.0 bits (107), Expect = 2e-05
Identities = 16/175 (9%), Positives = 51/175 (29%), Gaps = 22/175 (12%)
Query: 170 SPQLLSKIGELVKELKKANPTLMYVCD----PVMGDNGRMYVPEEVLPIYANELLSVADV 225
+ + L ++ + D P + + +L D+
Sbjct: 143 TEKTRDAALILAQKAHAYQKKV--CFDFNYRPSLNTANSALFMRQQY----ERILPYCDI 196
Query: 226 ICPNQFEAELLTKIP----IKDKASLLKTINVLHDR-GIKTVVISSSELGPEKHLLGVAS 280
+ ++ + L ++ +A + I + ++ ++ ++ L
Sbjct: 197 VFGSRRDLVELLGFIPREDLEGEAQETELIQRFMSQYNLEWFAGTTRSHSQNQNYLSGYL 256
Query: 281 TVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITR--TNHNVKESLERTIAT 333
+ + + D G GD +AA + N ++++++
Sbjct: 257 YTQNEYQQSEKRPLLNLDR--IGAGDAYAA---GILYGYSQNWSLEKAVTFATVN 306
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site,
structura genomics, PSI-2, protein structu initiative;
HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Length = 343
Score = 44.5 bits (106), Expect = 2e-05
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVI 264
L A I ++ A LT + VLH R +T +
Sbjct: 199 GLAPAATHIVFSEPAATRLTGLETVKDML-----PVLHARYPQTFIA 240
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics
consortium, TBSGC; 1.50A {Mycobacterium tuberculosis}
PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Length = 334
Score = 42.7 bits (101), Expect = 9e-05
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 27/107 (25%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
L++ A + N +E +LL +A ++ I V + LGP+ G
Sbjct: 194 RLVNGAAYLFTNDYEWDLLLSKTGWSEADVMA--------QIDLRVTT---LGPK----G 238
Query: 278 VASTVVGGSKTTVSINIPQF------DASFTGTGDLFAALMLAYITR 318
V G+ I++ D TG GD F A L +
Sbjct: 239 VDLVEPDGTT----IHVGVVPETSQTDP--TGVGDAFRAGFLTGRSA 279
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3-
deoxygluconokinase, PFKB family carbohy kinase,
structural genomics; 2.05A {Thermotoga maritima} SCOP:
c.72.1.1
Length = 351
Score = 42.7 bits (101), Expect = 9e-05
Identities = 33/179 (18%), Positives = 53/179 (29%), Gaps = 27/179 (15%)
Query: 170 SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYV--PEEVLPIYANELLSVADVIC 227
+L + + +K + T+ CD N R + EE + + DV+
Sbjct: 152 GKELPLILEDALKVANEKGVTV--SCDL----NYRARLWTKEEAQKVM-IPFMEYVDVLI 204
Query: 228 PNQFEAELLTKIPIKDKASLLKTIN----------VLHDRGIKTVVISSSELGPEKHLLG 277
N+ + E + I ++ +N V KTV I+ E
Sbjct: 205 ANEEDIEKVLGISVEGLDLKTGKLNREAYAKIAEEVTRKYNFKTVGITLRESISATVNYW 264
Query: 278 VASTVVGGSKTTV-SINIPQFDASFTGTGDLFAALMLAYITR--TNHNVKESLERTIAT 333
G I D G GD FA A I + ++ E A
Sbjct: 265 SVMVFENGQPHFSNRYEIHIVDR--VGAGDSFAG---ALIYGSLMGFDSQKKAEFAAAA 318
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose
metabolic process, PFKB family,11206G, PSI-II, NYSGXRC,
structural genomics; HET: ATP; 1.79A {Escherichia coli
O6} PDB: 3k9e_A
Length = 330
Score = 43.0 bits (102), Expect = 9e-05
Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 26/154 (16%)
Query: 179 ELVKELKKANPTLMYVCDPVMGDNGRMYV--PEEVLPIYANELLSVADVICPNQFEAELL 236
+ V +K + + DP N R + E+ + +L + D+ P++ E LL
Sbjct: 152 KAVTIVKANGGVISF--DP----NIRKEMLDIPEMRDAL-HFVLELTDIYMPSEGEVLLL 204
Query: 237 TKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTV-SINIP 295
+ ++ + I + G+K V++ G + G AS + V S +
Sbjct: 205 S-----PHSTPERAIAGFLEEGVKEVIVK---RGNQ----G-ASYYSANEQFHVESYPVE 251
Query: 296 QFDASFTGTGDLFAALMLAYITRTNHNVKESLER 329
+ D TG GD F +A + +L+
Sbjct: 252 EVDP--TGAGDCFGGAWIACRQL-GFDAHRALQY 282
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding,
nucleoside B transferase; HET: MZR ADP; 1.55A
{Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A*
3b1r_A*
Length = 326
Score = 42.3 bits (100), Expect = 1e-04
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 24/105 (22%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
+ +A I N +EA+L+ + + ++ ++I+ G G
Sbjct: 181 RSIELATYIAVNDYEAKLVCDKTGWSEDEIA--------SRVQALIIT---RGEH----G 225
Query: 278 VASTVVGGSKTTVSINIPQFDASF----TGTGDLFAALMLAYITR 318
T+ T IP A TG GD F +L I
Sbjct: 226 A--TIRHRDGT---EQIPAVRAERVIDPTGCGDAFRGGLLYGIEH 265
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics,
transferase, riken structural genomics/proteomics
initiative, RSGI; HET: KDG ADP; 2.1A {Thermus
thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Length = 309
Score = 42.2 bits (100), Expect = 1e-04
Identities = 38/163 (23%), Positives = 57/163 (34%), Gaps = 31/163 (19%)
Query: 170 SPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYV--PEEVLPIYANELLSVADVIC 227
SP+ + ++E K+ + D N R + PEE L D++
Sbjct: 139 SPEARAFSLWAMEEAKRRGVRV--SLDV----NYRQTLWSPEEARGFL-ERALPGVDLLF 191
Query: 228 PNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSK 287
++ EAELL ++A L VV+ G + G A V G +
Sbjct: 192 LSEEEAELLF--GRVEEA--------LRALSAPEVVLK---RGAK----G-AWAFVDGRR 233
Query: 288 TTV-SINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLER 329
+ + D G GD FAA LA V+E L
Sbjct: 234 VEGSAFAVEAVDP--VGAGDAFAAGYLAGAVW-GLPVEERLRL 273
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Length = 332
Score = 41.0 bits (97), Expect = 3e-04
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 14/123 (11%)
Query: 208 PEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSS 267
PEE Y + + +D++ + E ++L +K +TI L + +VI
Sbjct: 186 PEETAVYY-SLVAEQSDIVIGTREEFDVLEN--RTEKGDNDETIRYLFKHSPELIVIK-- 240
Query: 268 ELGPEKHLLGVASTVVGGSKTTV-SINIPQFDASFTGTGDLFAALMLAYITRTNHNVKES 326
G E G + G + G GD +A+ L + ++ +
Sbjct: 241 -HGVE----GSFAYTKAGEAYRGYAYKTKVLKT--FGAGDSYASAFLYALIS-GKGIETA 292
Query: 327 LER 329
L+
Sbjct: 293 LKY 295
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 40.6 bits (96), Expect = 5e-04
Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 17/122 (13%)
Query: 209 EEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSE 268
+ E++S AD + P+ +A L S + + G+K V+++
Sbjct: 192 GDDGAGVVEEIISRADFVKPSLDDARHLF-----GPDSPENYVKRYLELGVKAVILT--- 243
Query: 269 LGPEKHLLGVASTVVGGSKTTV-SINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESL 327
LG E G G + + + D TG GD F + + + + VK S+
Sbjct: 244 LGEE----G-VIASDGEEIIRIPAFSEDAVDV--TGAGDAFWSGFICGLLD-GYTVKRSI 295
Query: 328 ER 329
+
Sbjct: 296 KL 297
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics,
protein structure initiative; 1.97A {Xylella fastidiosa
TEMECULA1} PDB: 3lki_A*
Length = 338
Score = 40.3 bits (95), Expect = 6e-04
Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 24/142 (16%)
Query: 179 ELVKELKKANPTLMYVCDPVMGDNGRMYV---PEEVLPIYANELLSVADVICPNQFEAEL 235
E ++ + A + + D N R + E + LS+ADV+ + E +
Sbjct: 151 EGMRRAQAAGAIVSF--DL----NFRPMLWPNGENPASRL-WKGLSLADVVKLSSEELDY 203
Query: 236 LTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTV-SINI 294
L D ++++ L + ++++ + V + +
Sbjct: 204 LANTLAADANAVIQQ---LWQGRAQLLLVT---DAAG----P-VHWYTRTAGGEVPTFRV 252
Query: 295 PQFDASFTGTGDLFAALMLAYI 316
D+ GD F ML
Sbjct: 253 QVQDS--NAAGDAFVGGMLYTF 272
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol
phosphate metabolism, ribokinase-L structural genomics;
HET: MSE CIT; 1.89A {Corynebacterium glutamicum}
Length = 319
Score = 39.4 bits (93), Expect = 0.001
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 18/123 (14%)
Query: 208 PEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSS 267
PEE L + V N+ E E+ + + L +RG++ ++
Sbjct: 182 PEEATKQA-EWALQHSTVAVGNKEECEIAV-----GETEPERAGRALLERGVELAIVK-- 233
Query: 268 ELGPEKHLLGVASTVVGGSKTTV-SINIPQFDASFTGTGDLFAALMLAYITRTNHNVKES 326
GP+ G + V + + G GD F + + +++
Sbjct: 234 -QGPK----G-VMAMTKDETVEVPPFFVDVING--LGAGDAFGGALCHGLLS-EWPLEKV 284
Query: 327 LER 329
L
Sbjct: 285 LRF 287
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc, transferase; 2.70A
{Polaromonas SP}
Length = 336
Score = 39.1 bits (92), Expect = 0.001
Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 208 PEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSS 267
PE + N+L + AD + P E LT + + G K VV+
Sbjct: 201 PELMRDAI-NDLATRADWVLPGMEEGRFLT-----GETTPEGVARFYRQLGAKLVVVK-- 252
Query: 268 ELGPEKHLLGVASTVVGGSKTTVSINIPQ-FDASFTGTGDLFAALMLA 314
LG E G GS + + D G GD FA +++
Sbjct: 253 -LGAE----GAYFDGEAGSGRVAGFPVAEVVDT--VGAGDGFAVGVIS 293
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose
metabolic process,ATP ribokinase, PFKB
family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A
{Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Length = 299
Score = 38.3 bits (90), Expect = 0.002
Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 44/151 (29%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
L + D+ N+ EAEL L G+KT+VI+ G G
Sbjct: 173 HLWPLIDIAVVNESEAEL------------------LQPYGVKTLVIT---QGAA----G 207
Query: 278 VASTVVGGSKTTVSINIPQF-----DASFTGTGDLF-AALMLAYITRTNHNVKESLER-T 330
+V + P D TG GD F A ++ + + R +L +
Sbjct: 208 AW--LVQEGQRQF---CPAVPAEALDT--TGAGDTFLAVMLASALLRGVAPDALALAHAS 260
Query: 331 IATIQSVLERTAQ-SFPNKGSSKASVPAFVA 360
A +V R +FP + A +
Sbjct: 261 RAAAITVSRRGTLSAFP----GSRELAALLT 287
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase;
2.3A {Staphylococcus aureus}
Length = 306
Score = 38.3 bits (90), Expect = 0.002
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 224 DVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPE 272
I PN+ E E++ + A ++K +L D+G ++V++S LG +
Sbjct: 176 LFIKPNKDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIVS---LGGD 221
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase,
structural genomics, joint center for structural
genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 296
Score = 38.3 bits (90), Expect = 0.002
Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 33/214 (15%)
Query: 119 DAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIG 178
+ + + + ++ + L + R+ + I
Sbjct: 86 EGVPCYEIKEGVAWDNI----PFTDELKRLALNT------RAVCFGSLAQRNEVSRATIN 135
Query: 179 ELVKELKKANPTLMYVCDPVMGDNGR-MYVPEEVLPIYANELLSVADVICPNQFEAELLT 237
+ + + L + D N R + +EVL E +++ N E ++
Sbjct: 136 RFLDTMPDIDGQLK-IFDI----NLRQDFYTKEVL----RESFKRCNILKINDEELVTIS 186
Query: 238 KIPIKDKASLLKTI-NVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTV-SINIP 295
++ L +L +K ++++ G G + G + + +P
Sbjct: 187 RMFGYPGIDLQDKCWILLAKYNLKMLILT---CGIN----G-SYVFTPGVVSFQETPKVP 238
Query: 296 QFDASFTGTGDLFAALMLAYITRTNHNVKESLER 329
D G GD F A A I +V E+ +
Sbjct: 239 VADT--VGAGDSFTAAFCASILN-GKSVPEAHKL 269
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 224 DVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPE 272
I PN E L PI + + L GI+++++S +
Sbjct: 176 SFIKPNHHELSELVSKPIASIEDAIPHVQRLIGEGIESILVS---FAGD 221
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase,
structural genomics, joint CE structural genomics, JCSG;
HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Length = 306
Score = 38.0 bits (89), Expect = 0.003
Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 40/135 (29%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
+ ++ + N E + ++ + T +++ G G
Sbjct: 181 KFHEISYMSIFNDHEYRVFREMTGLSSPKV-------------TTIVT---NGER----G 220
Query: 278 VASTVVGGSKTTVSINIPQFDASF--TGTGDLFAALMLAYITRTNHNVKESLERTI---- 331
++ K + P +S G GD F A + + S+E+ +
Sbjct: 221 S--SLFMDGKK---YDFPAIPSSGDTVGAGDSFRAGLYLALYNR-----RSIEKGMIYGT 270
Query: 332 --ATIQSVLERTAQS 344
A V++ ++
Sbjct: 271 IIAHH--VIDDGIEN 283
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase,
isoform A, structural genomics, structural genomics
consortium, SGC transferase; 1.85A {Homo sapiens} PDB:
2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A*
3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Length = 312
Score = 37.6 bits (88), Expect = 0.004
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 18/114 (15%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
+L DV+ ++ A+ L ++ L R +V + +E G
Sbjct: 195 QLFGYGDVVFVSKDVAKHLGFQSAEEALRGLY----GRVRKGAVLVCAWAEEG------- 243
Query: 278 VASTVVGGSKTTVSINIPQFDASF---TGTGDLFAALMLAYITRTNHNVKESLE 328
+ +G + G GD F A ++ +++ +V+E+L
Sbjct: 244 --ADALGPDGKLLHS-DAFPPPRVVDTLGAGDTFNASVIFSLSQ-GRSVQEALR 293
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase,
transferase; HET: RIB ADP; 1.98A {Mycobacterium
tuberculosis} PDB: 3go7_A*
Length = 310
Score = 36.8 bits (86), Expect = 0.008
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 218 ELLSVADVICPNQFEAELLTKIP 240
+L ++ADV+ N+ EA P
Sbjct: 188 DLAAIADVVIANEHEANDWPSPP 210
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2-
keto-3-deoxygluconate kinase; 2.00A {Sulfolobus
solfataricus} PDB: 2var_A*
Length = 313
Score = 36.8 bits (86), Expect = 0.008
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 20/125 (16%)
Query: 208 PEEVLPIYANELLSVAD--VICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVIS 265
E+ +L D V+ + + ++L D + + G+K ++
Sbjct: 173 LEKAKETI-LSILKKYDIEVLITDPDDTKILL-----DVTDPDEAYRKYKELGVKVLLYK 226
Query: 266 SSELGPEKHLLGVASTVVGGSKTTV-SINIPQFDASFTGTGDLFAALMLAYITRTNHNVK 324
LG + G A K + +P D TG GD A ++ + +++
Sbjct: 227 ---LGSK----G-AIAYKDNVKAFKDAYKVPVEDP--TGAGDAMAGTFVSLYLQ-GKDIE 275
Query: 325 ESLER 329
SL
Sbjct: 276 YSLAH 280
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.87A {Shigella flexneri}
Length = 319
Score = 36.0 bits (84), Expect = 0.013
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 27/121 (22%)
Query: 217 NELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLL 276
++L D+ + + L + + I H+ G+K VV+ G +
Sbjct: 187 QQMLECTDIAFLTLDDEDALW-----GQQPVEDVIARTHNAGVKEVVVK---RGAD---- 234
Query: 277 GVASTVVGGSKTTVSINIPQFDASF------TGTGDLFAALMLAYITR--TNHNVKESLE 328
++ G + V P T GD F+A Y+ T + + + +
Sbjct: 235 SCLVSIAGEALVDV----PAVKLPKEKVIDTTAAGDSFSA---GYLAVRLTGGSAENAAK 287
Query: 329 R 329
R
Sbjct: 288 R 288
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase;
HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB:
2i6a_A* 2i6b_A*
Length = 345
Score = 34.2 bits (79), Expect = 0.052
Identities = 16/121 (13%), Positives = 41/121 (33%), Gaps = 21/121 (17%)
Query: 218 ELLSVADVICPNQFEAELLTKI------PIKDKASLLKTINVLHDRGIKTVVISSSELGP 271
+++ D++ N+ EA + IK+ A + + ++ + + V+ +
Sbjct: 212 KVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDD- 270
Query: 272 EKHLLGVASTVVGGSKTTVSINIPQFDASF----TGTGDLFAALMLAYITRTNHNVKESL 327
T++ + + D G GD F L+ + + + E +
Sbjct: 271 ---------TIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGGFLSQLVS-DKPLTECI 320
Query: 328 E 328
Sbjct: 321 R 321
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Length = 328
Score = 34.1 bits (79), Expect = 0.056
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 16/114 (14%)
Query: 217 NELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLL 276
+ +V+D+ P+ + A T + G+++VV+ GP
Sbjct: 203 MQGAAVSDIALPSFEDEAAWF-----GDAGPDATADRYARAGVRSVVVK---NGPH---- 250
Query: 277 GVASTVVGGSKTTVSINIPQF-DASFTGTGDLFAALMLAYITRTNHNVKESLER 329
V G + Q D T GD F A +L + ++ ++
Sbjct: 251 AVHFLQDGRRGRVPVPPVAQVVDT--TAAGDSFNAGLLDSVLA-GQPLETAIAA 301
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 33.7 bits (78), Expect = 0.066
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 224 DVICPNQFEAELLTKIPIKDK--ASLLKTINVLHDRGIKTVVISSSELGPE 272
+I PN E E L + A++ + GI+ +VIS LG +
Sbjct: 182 YLIKPNLEELEGLLGQDFSENPLAAVQTALTKPMFAGIEWIVIS---LGKD 229
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 33.7 bits (78), Expect = 0.072
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 224 DVICPNQFEAELLTKIPIKDKASLLKTINVLHDRG-IKTVVISSSELGPE 272
+++ PNQ E L + + K + + G K VV+S LGP+
Sbjct: 182 ELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVS---LGPQ 228
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), struct genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 33.3 bits (77), Expect = 0.089
Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 12/112 (10%)
Query: 224 DVICPN-QFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTV 282
+V+ P+ + + +K +K L ++ V+S + ++
Sbjct: 199 NVVKPDLRGNHASFLGVDLKTFDDYVKLAEKLAEKSQV-SVVS---YEVKNDIV------ 248
Query: 283 VGGSKTTVSINIPQFDA-SFTGTGDLFAALMLAYITRTNHNVKESLERTIAT 333
+ + + D G GD + A M+ Y + N E + A+
Sbjct: 249 ATREGVWLIRSKEEIDTSHLLGAGDAYVAGMVYYFIKHGANFLEMAKFGFAS 300
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION,
PSI-II, NYSGXRC, kinase, structural genomics, structure
initiative; HET: ATP; 1.60A {Listeria innocua} PDB:
3hic_A* 3jul_A* 3q1y_A
Length = 320
Score = 33.3 bits (77), Expect = 0.098
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 224 DVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPE 272
D I PN+ E + ++ I +V+S LG +
Sbjct: 184 DFIKPNEDEVIAILDEKTNSLEENIR----TLAEKIPYLVVS---LGAK 225
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB
family, PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 1.90A {Pyrococcus horikoshii} PDB:
3ih0_A* 3gbu_A*
Length = 313
Score = 33.3 bits (77), Expect = 0.10
Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 26/124 (20%)
Query: 208 PEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSS 267
EE++ + E + +AD++ ++ E L + +G I+
Sbjct: 172 EEEMIKVL-EESIKLADIVKASEEEVLYLENQG-------------VEVKGSMLTAIT-- 215
Query: 268 ELGPEKHLLGVASTVVGGSKTTV-SINIPQFDASFTGTGDLFAALMLAYITRTNH-NVKE 325
LGP+ G + + V S N+ D TG GD F A +L I + ++ +
Sbjct: 216 -LGPK----G-CRLIKNETVVDVPSYNVNPLDT--TGAGDAFMAALLVGILKLKGLDLLK 267
Query: 326 SLER 329
+
Sbjct: 268 LGKF 271
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 33.3 bits (77), Expect = 0.11
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 224 DVICPNQFEAELLTKIPIK-DKASLLKTINVLHDRGIKTVVISSSELGPE 272
VI PN E L P+ SL + ++ GI+ +++S LG +
Sbjct: 200 TVIKPNISELYQLLNQPLDESLESLKQAVSQPLFEGIEWIIVS---LGAQ 246
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto-
gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus
tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Length = 311
Score = 32.1 bits (74), Expect = 0.25
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 19/124 (15%)
Query: 208 PEEVLPIYANEL-LSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISS 266
EE L + + +++++ D K + +V+
Sbjct: 172 AEEAKREILKLLSKFHLKFLITDTDDSKIIL--GESDPDKAAK----AFSDYAEIIVMK- 224
Query: 267 SELGPEKHLLGVASTVVGGSKTTV-SINIPQFDASFTGTGDLFAALMLAYITRTNHNVKE 325
LGP+ G A G K +P D TG GD L+ + +++
Sbjct: 225 --LGPK----G-AIVYYDGKKYYSSGYQVPVEDV--TGAGDALGGTFLSLYYK-GFEMEK 274
Query: 326 SLER 329
+L+
Sbjct: 275 ALDY 278
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi
tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles
gambiae}
Length = 365
Score = 31.9 bits (73), Expect = 0.26
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 217 NELLSVADVICPNQFEAELLTKIP------IKDKASLLKTINVLHDRGIKTVVISSSELG 270
E+ DV+ N+ EA L K +++ + + + + + V+I+
Sbjct: 226 EEIFPYVDVLFGNETEAIALAKEFNYGTEDLREIGKRIAALPKENGKRKRIVIITQGSDP 285
Query: 271 PEKHLLGVASTVVGGSKTTVSINIPQFDASF----TGTGDLFAALMLAYITRTNHNVKES 326
+ G+ + + G GD F LA + + + V
Sbjct: 286 --------VLLIEAGTDNVREFPVQKLAPEQMVDTNGAGDAFVGGFLAQLLQ-SRTVDVC 336
Query: 327 LE 328
++
Sbjct: 337 IK 338
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.33
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 13/35 (37%)
Query: 182 KELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYA 216
+ LKK +L ++Y + P A
Sbjct: 20 QALKKLQASL------------KLYADDSA-PALA 41
Score = 27.6 bits (60), Expect = 3.8
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 36 EKELKLIQSGSKTTVSIN 53
+ LKL S ++I
Sbjct: 26 QASLKLYADDSAPALAIK 43
>3sho_A Transcriptional regulator, RPIR family; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
1.80A {Sphaerobacter thermophilus}
Length = 187
Score = 30.3 bits (69), Expect = 0.73
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 8/84 (9%)
Query: 247 LLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDASFTGTGD 306
+ + +RG+ T+ ++ S + P +A V+ + S G
Sbjct: 103 TVAALAGAAERGVPTMALTDSSVSP---PARIADHVL-----VAATRGVGHSLSPVGLIA 154
Query: 307 LFAALMLAYITRTNHNVKESLERT 330
+ L+ R L
Sbjct: 155 VVNLLLAEIAVREPERALAVLREV 178
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor
CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Length = 347
Score = 30.4 bits (69), Expect = 0.82
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 23/122 (18%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASL-------LKTINVLHDRGIKTVVISSSELG 270
E+L D+I N+ EA+ + D + + + +G + VV +
Sbjct: 213 EVLPYTDIIVANRHEAKEFANMMKWDTDCVEEIARRAVSEVPYTGTKG-RVVVFTRDIES 271
Query: 271 PEKHLLGVASTVVGGSKTTVSINIPQFDASF----TGTGDLFAALMLAYITRTNHNVKES 326
TV+ ++ +PQ D G GD F L+ +++
Sbjct: 272 ----------TVLATKDGVETVPVPQLDQDKVIDMNGAGDAFMGGFLSAYAV-GKDLRRC 320
Query: 327 LE 328
E
Sbjct: 321 CE 322
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5-
helix bundle domain, raction intermediate; HET: ARG;
1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
Length = 410
Score = 30.2 bits (67), Expect = 0.97
Identities = 28/180 (15%), Positives = 53/180 (29%), Gaps = 24/180 (13%)
Query: 93 TIQSVLERTAQSFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGL 152
T + A++ E I + + HL +T D D+ +
Sbjct: 233 TDLQTVTLLAKNIVANK-----ECEFKRIVAINVPKWTNLMHLDT-WLTMLDKDKFLYSP 286
Query: 153 KMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVL 212
ND+ + + + G ++ L ++ V P+ G+ E
Sbjct: 287 IANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQSIINKKPVLIPIAGEGASQMEIERET 346
Query: 213 PIYANELLSVAD--VICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELG 270
L++ VI ++ E KT L GIK + ++L
Sbjct: 347 HFDGTNYLAIRPGVVIGYSRNE----------------KTNAALEAAGIKVLPFHGNQLS 390
>4e3a_A Sugar kinase protein; structural genomics, protein structure
initiative, nysgrc, S kinase, PSI-biology; HET: ADN;
1.63A {Rhizobium etli} PDB: 3ubo_A*
Length = 352
Score = 29.9 bits (68), Expect = 1.3
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 20/106 (18%)
Query: 225 VICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVG 284
V N+ EA L + +N + K ++ SE G A + G
Sbjct: 234 VFA-NRQEALSLY-----QTDDFEEALNRIAADC-KIAAVTMSENG--------AVILKG 278
Query: 285 GSKTTVSI--NIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLE 328
+ V+ D TG GDLFA+ L T+ ++++ +
Sbjct: 279 RERYYVNAIRIREVVDT--TGAGDLFASGFLYGYTQ-GRSLEDCGK 321
Score = 28.4 bits (64), Expect = 4.2
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 62 TGTGDLFAALMLAYITRTNHNVKESLE 88
TG GDLFA+ L T+ ++++ +
Sbjct: 296 TGAGDLFASGFLYGYTQ-GRSLEDCGK 321
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain-
containing protein 1A; HDHD1A, haloacid
dehalogenase-like hydrolase domain containing 1A; 2.00A
{Homo sapiens}
Length = 250
Score = 29.6 bits (67), Expect = 1.4
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 229 NQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSS-------ELGPEKHLLGVAST 281
E+ + A K I L GI + +SS + K + S
Sbjct: 101 QTKLKEVFPTAALMPGA--EKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSH 158
Query: 282 VVGGSKTTVS 291
+V G V
Sbjct: 159 IVLGDDPEVQ 168
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 29.0 bits (65), Expect = 3.0
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 142 EQDFDELIEGLKMND--LMDYTHVLTGYCRSPQL-LSKIGELVKELKKANPTLMYVCD 196
+ D + + E LK +D + + TGY L +++I E++K +++ N ++ D
Sbjct: 161 KVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVD 218
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 28.6 bits (64), Expect = 3.8
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 144 DFDELIEGLKMNDLMDYTHVLT--GYCRSPQL-LSKIGELVKELKKANPTLMYVCD 196
+ +E+ + LK ++ + H+ GY L + I +V +K ++ D
Sbjct: 163 NLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVD 218
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand
binding domain, transport protein; HET: GLU; 2.10A
{Nostoc punctiforme}
Length = 228
Score = 28.0 bits (63), Expect = 4.6
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 104 SFPNKGQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLK 153
NKG+ GF +D ++ + G + K+I ELI +K
Sbjct: 16 VLSNKGELS--GFSIDLWRSI--ATQIGI---ESKLIEYSSVPELISAIK 58
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1,
structural genomics, joint center for structural
genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Length = 273
Score = 27.7 bits (61), Expect = 5.2
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 215 YANELLSVA-DVICPNQFEAELLTKIPIK----DKASLLKTINVLHDRGIKTVVISSSEL 269
+L+ V+ N E ++ D + L ++ + + +
Sbjct: 107 VGEKLVHNQPTVVKGNLSEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQALRQQTQKFP 166
Query: 270 GPEKHLLGVASTVVGGSKTTVSIN-IPQFDASFTGTGDLFAALMLAYI 316
G+ +V + V N +P+ FTGTGDL AL+ A +
Sbjct: 167 QTVFLATGIQDVLVSQEQVIVLQNGVPEL-DCFTGTGDLVGALVAALL 213
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate
conformation, signaling protein,transferase; HET: ACP;
1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A*
2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A*
1lik_A*
Length = 383
Score = 27.8 bits (62), Expect = 6.2
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 19/129 (14%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHL-- 275
LL +++ N+ E L K+ A + ++ + L ++
Sbjct: 232 SLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALRLLTAGQNTSA 291
Query: 276 -------LGVASTVV--GGSKTTVSINIPQFDASF-------TGTGDLFAALMLAYITRT 319
G + + TV ++ G GD F L +++
Sbjct: 292 TKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQ- 350
Query: 320 NHNVKESLE 328
VK+ +
Sbjct: 351 GKTVKQCIM 359
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C
3f3p_C 3ewe_B
Length = 570
Score = 27.9 bits (61), Expect = 6.4
Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 29/146 (19%)
Query: 140 ITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVM 199
I ++ ++ D + G + + + Y +
Sbjct: 397 IISGKIHSILPVMESLDSCTAAFTAM-------ICEAKGLIENIFEGEKNSDDYSNEDNE 449
Query: 200 GDNGRMYVP----EEVLPIYANELLSVAD-----------VICPNQFE-------AELLT 237
+L +A EL S+ D + AELL
Sbjct: 450 MLEDLFSYRNGMASYMLNSFAFELCSLGDKELWPVAIGLIALSATGTRSAKKMVIAELLP 509
Query: 238 KIPIKDKASLLKTINVLHDRGIKTVV 263
P + +++ + + +
Sbjct: 510 HYPFVTNDDIEWMLSICVEWRLPEIA 535
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine
biosynthesis; 1.70A
{Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Length = 138
Score = 26.5 bits (59), Expect = 7.6
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 6/23 (26%)
Query: 71 LMLAYITRTNHNVKESLERTIAT 93
LM+AY+ R E+L RT+ T
Sbjct: 37 LMVAYMNR------EALRRTLET 53
Score = 26.5 bits (59), Expect = 7.6
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 6/23 (26%)
Query: 311 LMLAYITRTNHNVKESLERTIAT 333
LM+AY+ R E+L RT+ T
Sbjct: 37 LMVAYMNR------EALRRTLET 53
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 27.6 bits (62), Expect = 7.9
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 131 GYGHLKGKVI--------TEQDFDELIEGLKM 154
GYG +K K +D E+++ L+
Sbjct: 343 GYGSVKEKTFRIGHMGYMKFEDIQEMLDNLRE 374
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 27.2 bits (61), Expect = 9.1
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 8/32 (25%)
Query: 131 GYGHLKGKV--------ITEQDFDELIEGLKM 154
G +K + +T +D L+ K
Sbjct: 338 NGGEMKDTIFRVGHIGALTHEDNTTLVNAFKD 369
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Length = 347
Score = 27.4 bits (61), Expect = 9.2
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 69 AALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKGQYEVLGFEVDAINTVQFSN 128
A M + T ++ L +A +P+ G ++A +
Sbjct: 282 LAAMTSC--------NPRA--TATELKRTLLESADKYPSLVDKVTEGRVLNAEKAISMFC 331
Query: 129 HSGYGHLKGKVITEQ 143
Y ++ ++E+
Sbjct: 332 KKNYIPVRQGRMSEE 346
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.365
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,161,589
Number of extensions: 307890
Number of successful extensions: 1047
Number of sequences better than 10.0: 1
Number of HSP's gapped: 992
Number of HSP's successfully gapped: 104
Length of query: 360
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 265
Effective length of database: 4,049,298
Effective search space: 1073063970
Effective search space used: 1073063970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)