RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11349
(360 letters)
>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId:
9940]}
Length = 309
Score = 181 bits (461), Expect = 2e-55
Identities = 110/250 (44%), Positives = 163/250 (65%), Gaps = 12/250 (4%)
Query: 112 EVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSP 171
+VLGFEVDA+N+VQFSNH+GY H KG+V+ + EL +GLK+N + Y +VLTGY R
Sbjct: 26 QVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDK 85
Query: 172 QLLSKIGELVKELKKANPTLMYVCDPVMGDN----GRMYVPEEVLPIYANELLSVADVIC 227
L+ + ++V+ELK+ NP L+YVCDPVMGD G MYVP+++LP+Y +++ VAD+I
Sbjct: 86 SFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIIT 145
Query: 228 PNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEK---HLLGVASTVVG 284
PNQFEAELLT I + L+ +++LH G TVVI+SS L + +L+ + S
Sbjct: 146 PNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTR 205
Query: 285 GSKTTV-----SINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLE 339
+V + + + DA F GTGDLFAA++LA+ + +N+K + E+T++ + VL+
Sbjct: 206 APDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQ 265
Query: 340 RTAQSFPNKG 349
RT + K
Sbjct: 266 RTIKCAKAKS 275
Score = 56.3 bits (135), Expect = 1e-09
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 32 LTCKEKELKLIQSGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTI 91
++ S + + + + DA F GTGDLFAA++LA+ + +N+K + E+T+
Sbjct: 198 ALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTV 257
Query: 92 ATIQSVLERTAQSFPNKG 109
+ + VL+RT + K
Sbjct: 258 SAMHHVLQRTIKCAKAKS 275
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId:
562]}
Length = 288
Score = 154 bits (389), Expect = 6e-45
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 4/236 (1%)
Query: 112 EVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMND-LMDYTHVLTGYCRS 170
LG V +NTVQFSNH+ YG G V+ E+++G+ D L VL+GY S
Sbjct: 27 RRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGS 86
Query: 171 PQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMY-VPEEVLPIYANELLSVADVICPN 229
+ I +V+++K ANP Y CDPVMG + V V + L +D+I PN
Sbjct: 87 AEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPN 146
Query: 230 QFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSEL-GPEKHLLGVASTVVGGSKT 288
E E+L + + + + L +G + V++ G + + +
Sbjct: 147 LVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWH 206
Query: 289 TVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQS 344
+ G GD+ + L+L + + ++E+LE A + ++ T
Sbjct: 207 ISRPLVDFGMRQPVGVGDVTSGLLLVKLLQ-GATLQEALEHVTAAVYEIMVTTKAM 261
Score = 46.3 bits (109), Expect = 2e-06
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 54 IPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKGQYE 112
+ G GD+ + L+L + + ++E+LE A + ++ T +YE
Sbjct: 212 VDFGMRQPVGVGDVTSGLLLVKLLQ-GATLQEALEHVTAAVYEIMVTTKAM----QEYE 265
>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine
phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus
thermophilus [TaxId: 274]}
Length = 258
Score = 59.5 bits (143), Expect = 9e-11
Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 8/184 (4%)
Query: 158 MDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYAN 217
TG ++ + E +++ + V ++ +G + +E
Sbjct: 69 FPLHAAKTGALGDAAIVEAVAEA---VRRFGVRPLVVDPVMVAKSGDPLLAKEAAAALKE 125
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
L +AD++ PN+ EAE L PI+ + L G K V++ L E+ +
Sbjct: 126 RLFPLADLVTPNRLEAEALLGRPIRTLKEAEEAAKALLALGPKAVLLKGGHLEGEEAV-- 183
Query: 278 VASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSV 337
+ + GTG +A + A + + + E++ A +
Sbjct: 184 --DLLATRGGVLRFSAPRVHTRNTHGTGCTLSAAIAALLAK-GRPLAEAVAEAKAYLTRA 240
Query: 338 LERT 341
L+
Sbjct: 241 LKTA 244
Score = 34.0 bits (77), Expect = 0.018
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 61 FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERT 101
GTG +A + A + + + E++ A + L+
Sbjct: 205 THGTGCTLSAAIAALLAK-GRPLAEAVAEAKAYLTRALKTA 244
>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine
phosphate kinase (HMP-phosphate kinase, ThiD)
{Salmonella typhimurium [TaxId: 90371]}
Length = 266
Score = 46.3 bits (109), Expect = 2e-06
Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 9/195 (4%)
Query: 156 DLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIY 215
+ G ++ + + L++ + + + ++ +G + +
Sbjct: 69 SDVRIDTTKIGMLAETDIVEAV---AERLQRHHVRNVVLDTVMLAKSGDPLLSPSAIETL 125
Query: 216 ANELLSVADVICPNQFEA-ELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKH 274
LL +I PN EA LL + + +L L G + V++ L +
Sbjct: 126 RVRLLPQVSLITPNLPEAAALLDAPHARTEQEMLAQGRALLAMGCEAVLMKGGHLEDAQS 185
Query: 275 LLGVASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATI 334
+ + GTG +A + A R + + E++ A +
Sbjct: 186 ----PDWLFTREGEQRFSAPRVNTKNTHGTGCTLSAALAALRPR-HRSWGETVNEAKAWL 240
Query: 335 QSVLERTAQSFPNKG 349
+ L + KG
Sbjct: 241 SAALAQADTLEVGKG 255
Score = 27.9 bits (61), Expect = 1.8
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 61 FTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKG 109
GTG +A + A R + + E++ A + + L + KG
Sbjct: 208 THGTGCTLSAALAALRPR-HRSWGETVNEAKAWLSAALAQADTLEVGKG 255
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}
Length = 306
Score = 38.2 bits (87), Expect = 0.001
Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 12/184 (6%)
Query: 167 YCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVI 226
+ ++ L+ +L+ ++M + + + +ELL++ D+I
Sbjct: 122 VEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPARELPDELLALVDII 181
Query: 227 CPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGS 286
PN+ EAE LT I +++ K VLH++GI+TV+I LG V
Sbjct: 182 TPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLI---TLGSRGVWASVNGEGQ--- 235
Query: 287 KTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER--TAQS 344
+ D GD F ++ + + E++ A + R S
Sbjct: 236 -RVPGFRVQAVDT--IAAGDTFNGALITALLE-EKPLPEAIRFAHAAAAIAVTRKGAQPS 291
Query: 345 FPNK 348
P +
Sbjct: 292 VPWR 295
Score = 28.6 bits (62), Expect = 1.2
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 62 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER--TAQSFPNKGQYEVL 114
GD F ++ + + E++ A + R S P + + +
Sbjct: 248 IAAGDTFNGALITALLE-EKPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAF 301
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 308
Score = 37.1 bits (84), Expect = 0.003
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 14/157 (8%)
Query: 205 MYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVI 264
++ P + + +++DV C N+ EAE+LT + + A + VL RG + V+I
Sbjct: 161 LFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVII 220
Query: 265 SSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRT-NHNV 323
+ G S K + + D TG GD F + Y+ N ++
Sbjct: 221 TLGAEGCVVL-----SQTEPEPKHIPTEKVKAVDT--TGAGDSFVGALAFYLAYYPNLSL 273
Query: 324 KESLERTIATIQSVLER--TAQSFPNKGSSKASVPAF 358
++ L R+ ++ T S+P K +P
Sbjct: 274 EDMLNRSNFIAAVSVQAAGTQSSYP----YKKDLPLT 306
Score = 29.0 bits (63), Expect = 0.92
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 62 TGTGDLFAALMLAYITRT-NHNVKESLERTIATIQSVLER--TAQSFPNKGQYE 112
TG GD F + Y+ N ++++ L R+ ++ T S+P K
Sbjct: 251 TGAGDSFVGALAFYLAYYPNLSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLP 304
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga
maritima [TaxId: 2336]}
Length = 319
Score = 36.5 bits (83), Expect = 0.003
Identities = 30/214 (14%), Positives = 63/214 (29%), Gaps = 23/214 (10%)
Query: 136 KGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVC 195
G +T+ D + + KM V++G ELV+ ++ +
Sbjct: 112 PGPDVTDMDVNHFLRRYKMTLSKVDCVVISGSIPPGVNEGICNELVRLARERGVFVFVEQ 171
Query: 196 DPVMGDNGRMYVPEEVLPIYANELLSVADVICPN-QFEAELLTKIPIKDKASLLKTINVL 254
P + + +V+ P+ + + +K +K L
Sbjct: 172 TPRLLERIYEG-------------PEFPNVVKPDLRGNHASFLGVDLKTFDDYVKLAEKL 218
Query: 255 HDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLA 314
++ +VV + G + + G GD + A M+
Sbjct: 219 AEKSQVSVVSYEVKNDIVATREG---------VWLIRSKEEIDTSHLLGAGDAYVAGMVY 269
Query: 315 YITRTNHNVKESLERTIATIQSVLERTAQSFPNK 348
Y + N E + A+ + R + P+
Sbjct: 270 YFIKHGANFLEMAKFGFASALAATRRKEKYMPDL 303
Score = 32.7 bits (73), Expect = 0.061
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 62 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKGQYE 112
G GD + A M+ Y + N E + A+ + R + P+ +
Sbjct: 257 LGAGDAYVAGMVYYFIKHGANFLEMAKFGFASALAATRRKEKYMPDLEAIK 307
>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase
{Thermotoga maritima, TM0067 [TaxId: 2336]}
Length = 333
Score = 36.2 bits (82), Expect = 0.004
Identities = 25/191 (13%), Positives = 52/191 (27%), Gaps = 19/191 (9%)
Query: 154 MNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLP 213
++ + +L + + +K + T+ + + + +
Sbjct: 127 LDGARWFHFSGITPPLGKELPLILEDALKVANEKGVTVSCDLNYRARLWTKEEAQKVM-- 184
Query: 214 IYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTIN----------VLHDRGIKTVV 263
+ DV+ N+ + E + I ++ +N V KTV
Sbjct: 185 ---IPFMEYVDVLIANEEDIEKVLGISVEGLDLKTGKLNREAYAKIAEEVTRKYNFKTVG 241
Query: 264 ISSSELGPEKHLLGVASTVVGGSKTTV-SINIPQFDASFTGTGDLFAALMLAYITRTNHN 322
I+ E G I D G GD FA ++ +
Sbjct: 242 ITLRESISATVNYWSVMVFENGQPHFSNRYEIHIVDR--VGAGDSFAGALIYGSLM-GFD 298
Query: 323 VKESLERTIAT 333
++ E A
Sbjct: 299 SQKKAEFAAAA 309
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId:
2336]}
Length = 299
Score = 36.2 bits (82), Expect = 0.005
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 12/133 (9%)
Query: 218 ELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLG 277
E+ D + PN+ E E L+K + ++ K + G+K V++ +LG + G
Sbjct: 167 EIFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIV---KLGDK----G 219
Query: 278 VASTVVGGSKTTVSINIPQFDASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSV 337
V K + + D T GD+F ++ N +E++ A
Sbjct: 220 VLLVNKNEKKHFPTFKVKAVDT--TAAGDVFNGAFAVALSE-GKNPEEAVIFGTAAAAIS 276
Query: 338 LER--TAQSFPNK 348
+ R S P +
Sbjct: 277 VTRLGAQSSIPAR 289
Score = 28.2 bits (61), Expect = 1.5
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 62 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER--TAQSFPNKGQYE 112
T GD+F ++ N +E++ A + R S P + + E
Sbjct: 242 TAAGDVFNGAFAVALSE-GKNPEEAVIFGTAAAAISVTRLGAQSSIPAREEVE 293
>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii
[TaxId: 5811]}
Length = 350
Score = 36.3 bits (82), Expect = 0.005
Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 19/125 (15%)
Query: 223 ADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTV 282
+++ N+ E L K+ A + ++ + L ++ V
Sbjct: 208 TNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALRLLTAGQNTSATKLVV 267
Query: 283 V--------------GGSKTTVSINIPQFDASF----TGTGDLFAALMLAYITRTNHNVK 324
+ G+ + +P A G GD F L +++ VK
Sbjct: 268 MTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQ-GKTVK 326
Query: 325 ESLER 329
+ +
Sbjct: 327 QCIMC 331
Score = 29.4 bits (64), Expect = 0.66
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 62 TGTGDLFAALMLAYITRTNHNVKESLER 89
G GD F L +++ VK+ +
Sbjct: 305 NGAGDAFVGGFLYALSQ-GKTVKQCIMC 331
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
[TaxId: 2094]}
Length = 409
Score = 34.3 bits (78), Expect = 0.021
Identities = 35/224 (15%), Positives = 61/224 (27%), Gaps = 41/224 (18%)
Query: 52 INIPQFDASFTGTGDLFAA---LMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNK 108
P S G L++ RT+ L + I NK
Sbjct: 202 YYDPSLKLSIEGGDVFIYNNDTLVVGVSERTDLQTVTLLAKNI-------------VANK 248
Query: 109 GQYEVLGFEVDAINTVQFSNHSGYGHLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYC 168
I + + HL +T D D+ + ND+ +
Sbjct: 249 ECEFKR------IVAINVPKWTNLMHLDT-WLTMLDKDKFLYSPIANDVFKFWDYDLVNG 301
Query: 169 RSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVAD--VI 226
+ + G ++ L ++ V P+ G+ E L++ VI
Sbjct: 302 GAEPQPVENGLPLEGLLQSIINKKPVLIPIAGEGASQMEIERETHFDGTNYLAIRPGVVI 361
Query: 227 CPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSELG 270
++ E KT L GIK + ++L
Sbjct: 362 GYSRNE----------------KTNAALEAAGIKVLPFHGNQLS 389
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC
{Enterococcus faecalis [TaxId: 1351]}
Length = 313
Score = 32.3 bits (72), Expect = 0.086
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 62 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNKGQYE 112
G+GD A + + + + E L+ +A + + + +
Sbjct: 251 VGSGDATIAGLAYGLAK-DAPAAELLKWGMAAGMANAQERMTGHVDVENVK 300
Score = 30.8 bits (68), Expect = 0.25
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 302 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNK 348
G+GD A + + + + E L+ +A + + +
Sbjct: 251 VGSGDATIAGLAYGLAK-DAPAAELLKWGMAAGMANAQERMTGHVDV 296
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga
maritima [TaxId: 2336]}
Length = 288
Score = 31.5 bits (70), Expect = 0.12
Identities = 18/163 (11%), Positives = 41/163 (25%), Gaps = 17/163 (10%)
Query: 178 GELVKELKKANPTLMYVCDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLT 237
+L+ L++ L + + + + L D+ + EAE LT
Sbjct: 130 EDLIPVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKE-KYLKYLDLFKVDSREAETLT 188
Query: 238 KIPIKDKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQF 297
++ + G + ++
Sbjct: 189 GTNDLRESCRIIRSFGAKIILATHASGVIVFDGNFYEASFRSWSLE-------------- 234
Query: 298 DASFTGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 340
TG GD A L +++++ + A +
Sbjct: 235 --GRTGRGDTCTAAFLVGFVFKKMSIEKATKFAAAVTSVKMRH 275
Score = 28.0 bits (61), Expect = 1.6
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 62 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER 100
TG GD A L +++++ + A +
Sbjct: 237 TGRGDTCTAAFLVGFVFKKMSIEKATKFAAAVTSVKMRH 275
>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 342
Score = 31.3 bits (69), Expect = 0.19
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 62 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNK 108
G GD F L+ + + + E + ++ RT +FP K
Sbjct: 293 NGAGDAFVGGFLSQLVS-DKPLTECIRAGHYAASIIIRRTGCTFPEK 338
Score = 31.3 bits (69), Expect = 0.19
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 302 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLERTAQSFPNK 348
G GD F L+ + + + E + ++ RT +FP K
Sbjct: 293 NGAGDAFVGGFLSQLVS-DKPLTECIRAGHYAASIIIRRTGCTFPEK 338
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 308
Score = 29.8 bits (65), Expect = 0.45
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 62 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER--TAQSFPNKGQYE 112
TG GD L+ + ++++L+ I + ++ P E
Sbjct: 251 TGAGDALGGTFLSLYYK-GFEMEKALDYAIVASTLNVMIRGDQENLPTTKDIE 302
Score = 29.0 bits (63), Expect = 0.84
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 302 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER--TAQSFPNK 348
TG GD L+ + ++++L+ I + ++ P
Sbjct: 251 TGAGDALGGTFLSLYYK-GFEMEKALDYAIVASTLNVMIRGDQENLPTT 298
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus
thermophilus [TaxId: 274]}
Length = 302
Score = 29.7 bits (65), Expect = 0.45
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 62 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER--TAQSFPNKGQYEVL 114
G GD FAA LA V+E L SV + P + EVL
Sbjct: 247 VGAGDAFAAGYLAGAVW-GLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVL 300
Score = 28.6 bits (62), Expect = 1.1
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 302 TGTGDLFAALMLAYITRTNHNVKESLERTIATIQSVLER--TAQSFPNK 348
G GD FAA LA V+E L SV + P +
Sbjct: 247 VGAGDAFAAGYLAGAVW-GLPVEERLRLANLLGASVAASRGDHEGAPYR 294
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB
{Bacillus halodurans [TaxId: 86665]}
Length = 306
Score = 29.3 bits (64), Expect = 0.69
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 62 TGTGDLFAALMLAYITRTNHNVKESLERTIAT 93
G GD A LA + ++++++ +A
Sbjct: 245 VGAGDSVVAGFLAALQE-GKSLEDAVPFAVAA 275
Score = 29.3 bits (64), Expect = 0.69
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 302 TGTGDLFAALMLAYITRTNHNVKESLERTIAT 333
G GD A LA + ++++++ +A
Sbjct: 245 VGAGDSVVAGFLAALQE-GKSLEDAVPFAVAA 275
>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
phenylalanine-repressible {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 462
Score = 28.3 bits (63), Expect = 1.4
Identities = 11/67 (16%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 138 KVITEQDFDELIEGLKMNDLMDYTHVLTGYCR--SPQLLSKIGELVKELKKANPTLMYVC 195
K+ + +E ++ D + LT R + ++ + +V++++ +++ C
Sbjct: 306 KLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQC 365
Query: 196 DPVMGDN 202
DP+ G+
Sbjct: 366 DPMHGNT 372
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 27.5 bits (60), Expect = 1.9
Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 10/150 (6%)
Query: 151 GLKM-NDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDPVMGDNGRMYVPE 209
G M +L+ + L R+P+ ++ + E + CD ++ +
Sbjct: 12 GKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVK 71
Query: 210 EVLPIYANELLSVADVICPNQFEAELLTKIPIKDKASLLKTINVLHDRGIKTVVISSSEL 269
EV + I +L + + + + L +G++ + S
Sbjct: 72 EVA--------LGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG- 122
Query: 270 GPEKHLLGVASTVVGGSKTTVSINIPQFDA 299
G K + G S +VGG K A
Sbjct: 123 GEPKAIDGTLSVMVGGDKAIFDKYYDLMKA 152
>d1h70a_ d.126.1.3 (A:) Dimethylarginine dimethylaminohydrolase DDAH
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 255
Score = 27.1 bits (59), Expect = 3.5
Identities = 16/149 (10%), Positives = 43/149 (28%), Gaps = 19/149 (12%)
Query: 134 HLKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMY 193
+ + +E + +M H G +++ L+K +
Sbjct: 99 RFYPGKVERIEAPGTVEA--GDIMMVGDHFYIGESARTNAEG-ARQMIAILEKHGLSGSV 155
Query: 194 V---------CDPVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEAELLTKIPIKDK 244
V ++ + E + ++I + E+ I + ++
Sbjct: 156 VRLEKVLHLKTGLAYLEHNNLLAAGE---FVSKPEFQDFNIIEIPEEESYAANCIWVNER 212
Query: 245 ----ASLLKTINVLHDRGIKTVVISSSEL 269
A +T + G + + + +SE
Sbjct: 213 VIMPAGYPRTREKIARLGYRVIEVDTSEY 241
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase,
ThiK) {Bacillus subtilis [TaxId: 1423]}
Length = 269
Score = 26.9 bits (59), Expect = 4.2
Identities = 15/134 (11%), Positives = 33/134 (24%), Gaps = 28/134 (20%)
Query: 194 VCDPVMGDNGRMYVPEEVLPIYANELLSVA--DVICPNQFEAELLTKI---------PIK 242
+ DPV A +++ I N E + +
Sbjct: 92 ILDPVGAGAT------PFRTESARDIIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGE 145
Query: 243 DKASLLKTINVLHDRGIKTVVISSSELGPEKHLLGVASTVVGGSKTTVSINIPQFDASFT 302
+++ + + I+ + S N + T
Sbjct: 146 GGGDIIRLAQQAAQKLNTVIAITGEV-----------DVIADTSHVYTLHNGHKLLTKVT 194
Query: 303 GTGDLFAALMLAYI 316
G G L +++ A+
Sbjct: 195 GAGCLLTSVVGAFC 208
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 333
Score = 26.6 bits (58), Expect = 5.5
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 1/100 (1%)
Query: 135 LKGKVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYV 194
L V +EQ++D+ + + + + + L+ + E + +
Sbjct: 121 LDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNII 180
Query: 195 CD-PVMGDNGRMYVPEEVLPIYANELLSVADVICPNQFEA 233
D GR + P+EV Y +L A +
Sbjct: 181 RDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQ 220
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 25.6 bits (55), Expect = 6.0
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 138 KVITEQDFDELIEGLKMNDLMDYTHVLTGYCRSPQLLSKIGELVKELKKANPTLMYVCDP 197
V+ ++++E++ + L+++ G+C++ K EL K+ V
Sbjct: 5 TVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALA--PKYEELGALYAKSEFKDRVVIAK 62
Query: 198 VMGDNGRMYVPEEVLP 213
V + + P
Sbjct: 63 VDATANDVPDEIQGFP 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.365
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,210,285
Number of extensions: 54752
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 40
Length of query: 360
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,226,816
Effective search space: 336147584
Effective search space used: 336147584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.2 bits)