BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1135
         (124 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
           With Doxepin
          Length = 452

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 37/73 (50%)

Query: 39  FIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTL 98
            +++     L  V LN+  +Y +  ER        Y +++++AD+I    V+P+ ++  L
Sbjct: 11  LVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLL 70

Query: 99  VQNWTWGSFLCYF 111
           +  W+ G  LC F
Sbjct: 71  MSKWSLGRPLCLF 83


>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Dobutamine (Crystal
           Dob92)
 pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Dobutamine (Crystal
           Dob92)
 pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Dobutamine (Crystal
           Dob102)
 pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Dobutamine (Crystal
           Dob102)
 pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Agonist Carmoterol
 pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Agonist Carmoterol
 pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Agonist Isoprenaline
 pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Agonist Isoprenaline
 pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Salbutamol
 pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Salbutamol
 pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Biased Agonist Bucindolol
 pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Biased Agonist Bucindolol
 pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Biased Agonist Carvedilol
 pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Biased Agonist Carvedilol
          Length = 315

 Score = 35.4 bits (80), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 38/78 (48%)

Query: 41  ILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQ 100
           +L  + +L  VA N+  I  I   +  +  T  +  ++A AD++  + V+P    + +  
Sbjct: 16  LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG 75

Query: 101 NWTWGSFLCYFLPMLQLI 118
            W WGSFLC     L ++
Sbjct: 76  TWLWGSFLCELWTSLDVL 93


>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Cyanopindolol
 pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Cyanopindolol
 pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Cyanopindolol
 pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Cyanopindolol
 pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Carazolol
 pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Carazolol
 pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Cyanopindolol
 pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Cyanopindolol
 pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Iodocyanopindolol
 pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Iodocyanopindolol
 pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Cyanopindolol
 pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Cyanopindolol
 pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
           Receptor
 pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
           Receptor
          Length = 313

 Score = 35.0 bits (79), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query: 41  ILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQ 100
           +L  + +L  VA N+  I  I   +  +  T  +  ++A AD++  + V+P    + +  
Sbjct: 16  LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG 75

Query: 101 NWTWGSFLC 109
            W WGSFLC
Sbjct: 76  TWLWGSFLC 84


>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Cyclic Peptide Antagonist Cvx15
 pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
 pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
          Length = 499

 Score = 34.7 bits (78), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 18/109 (16%)

Query: 3   GSKYYESLAEG-MKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHI 61
           GS  Y+S+ E   + +N   +F K           +F   +Y +  L+G+  N   I  +
Sbjct: 27  GSGDYDSMKEPCFREEN--ANFNK-----------IFLPTIYSIIFLTGIVGNGLVILVM 73

Query: 62  IVERLFRDATCGYFINIALADIIKCMFVLPITL-MVTLVQNWTWGSFLC 109
             ++  R  T  Y +++++AD+   +FV+ +    V  V NW +G+FLC
Sbjct: 74  GYQKKLRSMTDKYRLHLSVADL---LFVITLPFWAVDAVANWYFGNFLC 119


>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
           Complex With Small Molecule Antagonist It1t
 pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
           Complex With Small Molecule Antagonist It1t
 pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
 pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
 pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
          Length = 502

 Score = 34.7 bits (78), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 18/109 (16%)

Query: 3   GSKYYESLAEG-MKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHI 61
           GS  Y+S+ E   + +N   +F K           +F   +Y +  L+G+  N   I  +
Sbjct: 27  GSGDYDSMKEPCFREEN--ANFNK-----------IFLPTIYSIIFLTGIVGNGLVILVM 73

Query: 62  IVERLFRDATCGYFINIALADIIKCMFVLPITL-MVTLVQNWTWGSFLC 109
             ++  R  T  Y +++++AD+   +FV+ +    V  V NW +G+FLC
Sbjct: 74  GYQKKLRSMTDKYRLHLSVADL---LFVITLPFWAVDAVANWYFGNFLC 119


>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Small Molecule Antagonist It1t In I222
           Spacegroup
          Length = 508

 Score = 34.7 bits (78), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 18/109 (16%)

Query: 3   GSKYYESLAEG-MKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHI 61
           GS  Y+S+ E   + +N   +F K           +F   +Y +  L+G+  N   I  +
Sbjct: 27  GSGDYDSMKEPCFREEN--ANFNK-----------IFLPTIYSIIFLTGIVGNGLVILVM 73

Query: 62  IVERLFRDATCGYFINIALADIIKCMFVLPITL-MVTLVQNWTWGSFLC 109
             ++  R  T  Y +++++AD+   +FV+ +    V  V NW +G+FLC
Sbjct: 74  GYQKKLRSMTDKYRLHLSVADL---LFVITLPFWAVDAVANWYFGNFLC 119


>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
           With Jdtic
 pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
           With Jdtic
          Length = 480

 Score = 34.3 bits (77), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 27  HIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKC 86
           HI P    + V    +Y V  + G+  N   ++ II     + AT  Y  N+ALAD +  
Sbjct: 16  HISPA---IPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADAL-V 71

Query: 87  MFVLPITLMVTLVQNWTWGSFLC 109
              +P    V L+ +W +G  LC
Sbjct: 72  TTTMPFQSTVYLMNSWPFGDVLC 94


>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
           PEPTIDE Mimetic
 pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
           PEPTIDE Mimetic
          Length = 434

 Score = 34.3 bits (77), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 33  LNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPI 92
           L + V  + LY    + G+  N   +Y I+     + AT  Y  N+ALAD +  +  LP 
Sbjct: 122 LGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTL-VLLTLPF 180

Query: 93  TLMVTLVQNWTWGSFLC 109
                L+  W +G+ LC
Sbjct: 181 QGTDILLGFWPFGNALC 197


>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
           Naltrindole
          Length = 461

 Score = 32.3 bits (72), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 42  LYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQN 101
           LY      G+  N+  ++ I+     + AT  Y  N+ALAD +     LP      L++ 
Sbjct: 20  LYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADAL-ATSTLPFQSAKYLMET 78

Query: 102 WTWGSFLC 109
           W +G  LC
Sbjct: 79  WPFGELLC 86


>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
           Protein Complex
          Length = 514

 Score = 31.2 bits (69), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 64  ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLI 118
           ERL       YFI ++A AD++  + V+P      L + WT+G+F C F   + ++
Sbjct: 211 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVL 264


>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
           Morphinan Antagonist
          Length = 464

 Score = 30.8 bits (68), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 42  LYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQN 101
           LY +  + G+  N   +Y I+     + AT  Y  N+ALAD +     LP   +  L+  
Sbjct: 23  LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMGT 81

Query: 102 WTWGSFLC 109
           W +G+ LC
Sbjct: 82  WPFGNILC 89


>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
           Of A G Protein Coupled Receptor
          Length = 309

 Score = 30.4 bits (67), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 64  ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 111
           ERL       YFI ++A AD++  + V+P      L + WT+G+F C F
Sbjct: 34  ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEF 80


>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
          Length = 458

 Score = 30.4 bits (67), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 64  ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 111
           ERL       YFI ++A AD++  + V+P      L++ WT+G+F C F
Sbjct: 38  ERL--QTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEF 84


>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
           Receptor- Fab Complex
          Length = 366

 Score = 30.0 bits (66), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 64  ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 111
           ERL       YFI ++A AD++  + V+P      L++ WT+G+F C F
Sbjct: 63  ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF 109


>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
          Length = 365

 Score = 30.0 bits (66), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 64  ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 111
           ERL       YFI ++A AD++  + V+P      L++ WT+G+F C F
Sbjct: 62  ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF 108


>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
           Protein- Coupled Receptor
          Length = 500

 Score = 30.0 bits (66), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 64  ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 111
           ERL       YFI ++A AD++  + V+P      L++ WT+G+F C F
Sbjct: 69  ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF 115


>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
           Beta2 Adrenoceptor
          Length = 501

 Score = 30.0 bits (66), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 64  ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 111
           ERL       YFI ++A AD++  + V+P      L++ WT+G+F C F
Sbjct: 70  ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF 116


>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
          Length = 342

 Score = 30.0 bits (66), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 64  ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 111
           ERL       YFI ++A AD++  + V+P      L++ WT+G+F C F
Sbjct: 39  ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF 85


>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
 pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
           In Complex With The Inverse Agonist Ici 118,551
 pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
           In Complex With A Novel Inverse Agonist
 pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
           In Complex With The Neutral Antagonist Alprenolol
          Length = 490

 Score = 30.0 bits (66), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 64  ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 111
           ERL       YFI ++A AD++  + V+P      L++ WT+G+F C F
Sbjct: 70  ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF 116


>pdb|3HUM|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From
           Staphylococcus Aureus Col In Complex With Cefotaxime
 pdb|3HUM|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From
           Staphylococcus Aureus Col In Complex With Cefotaxime
 pdb|3HUN|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From
           Staphylococcus Aureus Col In Complex With Ampicillin
 pdb|3HUN|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From
           Staphylococcus Aureus Col In Complex With Ampicillin
          Length = 453

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 4/31 (12%)

Query: 38  FFIILYGVTILSGVALNIFAIYHIIVERLFR 68
            F I+ G  +++G+AL    I H+I+ RLFR
Sbjct: 424 LFTIIGGTCLVAGLAL----IVHMIINRLFR 450


>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
           (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
          Length = 484

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 44  GVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLV-QNW 102
           GV ++S + LNI AI   I++   +     Y +++A AD++  + VLP  +       +W
Sbjct: 29  GVFVVS-LPLNIMAIVVFILKMKVKKPAVVYMLHLATADVL-FVSVLPFKISYYFSGSDW 86

Query: 103 TWGSFLCYFL 112
            +GS LC F+
Sbjct: 87  QFGSELCRFV 96


>pdb|3MAZ|A Chain A, Crystal Structure Of The Human Brdg1STAP-1 Sh2 Domain In
          Co The Ntal Ptyr136 Peptide
          Length = 125

 Score = 25.8 bits (55), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 5  KYYESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFI 40
          K+Y+ ++ G   QN+TI+  KP   P L +V  +F+
Sbjct: 65 KHYKVMSVG---QNYTIELEKPVTLPNLFSVIDYFV 97


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.335    0.148    0.478 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,441,029
Number of Sequences: 62578
Number of extensions: 116433
Number of successful extensions: 272
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 32
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 45 (21.9 bits)