Query psy1135
Match_columns 124
No_of_seqs 103 out of 1341
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 16:08:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.8 2.3E-19 5.1E-24 130.2 6.0 95 29-123 28-122 (423)
2 PHA03234 DNA packaging protein 99.8 1.5E-18 3.2E-23 126.4 9.3 89 33-123 29-119 (338)
3 PHA02638 CC chemokine receptor 99.6 1.9E-14 4.2E-19 107.4 10.4 87 34-123 96-182 (417)
4 PHA02834 chemokine receptor-li 99.6 1.1E-14 2.4E-19 105.4 8.7 86 35-123 27-112 (323)
5 PHA03235 DNA packaging protein 99.5 8.3E-14 1.8E-18 103.8 9.6 87 33-123 29-119 (409)
6 KOG4220|consensus 99.5 3.2E-16 6.9E-21 114.4 -4.5 87 37-123 31-117 (503)
7 PHA03087 G protein-coupled che 99.4 6.9E-13 1.5E-17 96.1 5.9 89 33-123 37-125 (335)
8 PF00001 7tm_1: 7 transmembran 99.2 1.4E-11 3.1E-16 84.3 5.3 71 53-123 1-71 (257)
9 PF10320 7TM_GPCR_Srsx: Serpen 98.4 1E-07 2.2E-12 67.2 0.8 69 48-118 2-70 (257)
10 KOG2087|consensus 98.1 9.3E-07 2E-11 64.4 0.9 93 27-120 15-115 (363)
11 PF05462 Dicty_CAR: Slime mold 97.6 0.0006 1.3E-08 49.4 8.3 83 37-123 7-89 (303)
12 PF11710 Git3: G protein-coupl 97.6 0.00055 1.2E-08 46.8 7.6 56 65-120 30-85 (201)
13 PF05296 TAS2R: Mammalian tast 97.2 0.0041 8.9E-08 45.0 8.8 78 35-112 5-85 (303)
14 PF10324 7TM_GPCR_Srw: Serpent 97.1 0.0011 2.5E-08 47.7 4.8 52 46-98 6-58 (318)
15 PF10328 7TM_GPCR_Srx: Serpent 96.5 0.0068 1.5E-07 43.0 5.2 44 46-89 3-46 (274)
16 PF10321 7TM_GPCR_Srt: Serpent 95.2 0.26 5.6E-06 36.0 8.7 54 34-87 30-83 (313)
17 PF10317 7TM_GPCR_Srd: Serpent 94.9 0.11 2.3E-06 37.3 6.1 72 41-113 3-78 (292)
18 PF03402 V1R: Vomeronasal orga 91.9 0.47 1E-05 33.9 5.0 52 66-118 6-57 (265)
19 PF00002 7tm_2: 7 transmembran 90.3 0.2 4.4E-06 34.6 1.9 76 44-122 8-85 (242)
20 PF01102 Glycophorin_A: Glycop 83.0 2.7 5.8E-05 26.5 3.8 24 49-72 75-98 (122)
21 PF10323 7TM_GPCR_Srv: Serpent 76.1 10 0.00022 27.2 5.5 46 48-93 6-55 (283)
22 PF09882 DUF2109: Predicted me 75.6 13 0.00028 21.4 5.0 50 46-95 3-52 (78)
23 TIGR01477 RIFIN variant surfac 61.0 17 0.00036 27.3 4.0 31 39-69 310-340 (353)
24 PF02060 ISK_Channel: Slow vol 60.9 24 0.00051 22.4 4.1 8 68-75 75-82 (129)
25 PTZ00046 rifin; Provisional 58.2 20 0.00043 26.9 4.0 29 40-68 316-344 (358)
26 PF02009 Rifin_STEVOR: Rifin/s 57.0 17 0.00036 26.6 3.4 29 40-68 257-285 (299)
27 KOG4564|consensus 55.5 1E+02 0.0022 24.3 8.8 78 41-118 149-238 (473)
28 PF11446 DUF2897: Protein of u 53.4 23 0.00049 19.1 2.8 19 42-60 7-25 (55)
29 PF10327 7TM_GPCR_Sri: Serpent 50.7 20 0.00044 26.0 3.1 62 38-100 10-76 (303)
30 PF10316 7TM_GPCR_Srbc: Serpen 50.3 94 0.002 22.4 7.0 57 39-95 8-64 (273)
31 PHA03099 epidermal growth fact 49.8 31 0.00066 22.1 3.3 35 32-66 96-130 (139)
32 PF15330 SIT: SHP2-interacting 45.3 49 0.0011 20.3 3.7 29 38-66 2-30 (107)
33 PF02532 PsbI: Photosystem II 43.2 42 0.0009 16.3 2.7 17 38-54 10-26 (36)
34 PF01708 Gemini_mov: Geminivir 41.1 19 0.00041 21.4 1.4 6 1-6 1-6 (91)
35 PF05545 FixQ: Cbb3-type cytoc 40.4 54 0.0012 16.8 4.0 23 40-64 11-33 (49)
36 PF10326 7TM_GPCR_Str: Serpent 39.6 29 0.00063 24.8 2.5 47 44-90 6-53 (307)
37 KOG4193|consensus 37.2 1.2E+02 0.0025 24.7 5.6 70 44-121 327-398 (610)
38 PF10873 DUF2668: Protein of u 35.6 50 0.0011 21.6 2.7 30 38-67 63-92 (155)
39 PF07095 IgaA: Intracellular g 34.7 69 0.0015 26.3 3.9 36 29-64 646-681 (705)
40 PF02468 PsbN: Photosystem II 32.4 43 0.00094 17.0 1.7 31 40-70 7-37 (43)
41 PF08114 PMP1_2: ATPase proteo 32.1 75 0.0016 16.0 2.6 19 45-63 13-31 (43)
42 PF14654 Epiglycanin_C: Mucin, 27.4 1.5E+02 0.0033 18.0 5.1 37 32-70 15-51 (106)
43 PF12768 Rax2: Cortical protei 26.5 1.2E+02 0.0027 21.9 3.9 18 37-54 232-249 (281)
44 PF06679 DUF1180: Protein of u 26.2 1.9E+02 0.0041 19.2 4.4 22 38-59 94-115 (163)
45 COG2164 Uncharacterized conser 25.4 28 0.0006 21.4 0.3 14 101-114 72-85 (126)
46 PRK13183 psbN photosystem II r 25.0 44 0.00096 17.3 1.0 31 40-70 10-40 (46)
47 KOG4349|consensus 24.9 1.9E+02 0.0042 18.4 6.5 35 34-68 45-79 (143)
48 cd07912 Tweety_N N-terminal do 24.5 3.4E+02 0.0073 21.0 9.9 80 6-86 6-94 (418)
49 PF11166 DUF2951: Protein of u 24.3 1.7E+02 0.0036 17.7 3.4 23 39-61 70-92 (98)
50 PF10292 7TM_GPCR_Srab: Serpen 23.4 3E+02 0.0065 20.0 8.9 50 38-87 18-67 (324)
51 PRK13664 hypothetical protein; 23.0 1.3E+02 0.0027 16.4 2.5 16 42-57 10-25 (62)
52 PHA03164 hypothetical protein; 22.5 1.1E+02 0.0025 17.6 2.4 22 66-87 54-75 (88)
53 PF10624 TraS: Plasmid conjuga 22.4 1.5E+02 0.0032 19.2 3.2 26 48-73 33-58 (164)
54 COG0109 CyoE Polyprenyltransfe 22.4 1.7E+02 0.0036 21.6 3.8 16 64-79 142-157 (304)
55 COG2181 NarI Nitrate reductase 22.3 2.8E+02 0.006 19.6 4.7 27 67-93 120-146 (228)
56 PF10319 7TM_GPCR_Srj: Serpent 22.1 1.5E+02 0.0033 21.9 3.6 47 43-89 11-58 (310)
57 CHL00020 psbN photosystem II p 22.0 39 0.00086 17.2 0.4 30 41-70 8-37 (43)
58 PRK13108 prolipoprotein diacyl 21.9 2.5E+02 0.0054 22.0 4.9 30 47-84 103-132 (460)
59 CHL00024 psbI photosystem II p 21.6 36 0.00079 16.5 0.2 17 38-54 10-26 (36)
60 KOG3114|consensus 21.4 3.4E+02 0.0074 19.9 8.6 53 2-59 87-139 (290)
61 PF03605 DcuA_DcuB: Anaerobic 21.0 2.6E+02 0.0057 21.2 4.7 23 65-87 253-275 (364)
62 COG1230 CzcD Co/Zn/Cd efflux s 20.6 3.6E+02 0.0077 19.9 7.5 57 42-100 126-183 (296)
No 1
>KOG4219|consensus
Probab=99.78 E-value=2.3e-19 Score=130.18 Aligned_cols=95 Identities=23% Similarity=0.450 Sum_probs=86.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q psy1135 29 KPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFL 108 (124)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~ 108 (124)
.......+.+..++|+++++++++||++|++++..+|++|+.+|+|++|||+||++++++..|+...+.+.+.|.+|.+.
T Consensus 28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~ 107 (423)
T KOG4219|consen 28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFY 107 (423)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccce
Confidence 33345677788999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred ccccchhhhhhhccc
Q psy1135 109 CYFLPMLQLIPFRIY 123 (124)
Q Consensus 109 C~~~~~~~~~~~~~S 123 (124)
|++..|+......+|
T Consensus 108 C~f~nf~~itav~vS 122 (423)
T KOG4219|consen 108 CRFVNFFPITAVFVS 122 (423)
T ss_pred eeeccccchhhhhHh
Confidence 999999888776655
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.78 E-value=1.5e-18 Score=126.35 Aligned_cols=89 Identities=10% Similarity=0.148 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q psy1135 33 LNVYVFFIILYGVTILSGVALNIFAIYHI--IVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCY 110 (124)
Q Consensus 33 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~i--~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~ 110 (124)
+..+.+.+.+|++++++|++||++|++++ .+++++|+++|+|++|||+||+++++ ..|+.... ..++|++|+..||
T Consensus 29 ~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~-~~~~w~fG~~lCk 106 (338)
T PHA03234 29 KKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLN-REALFNFNQAFCQ 106 (338)
T ss_pred HHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHH-HhCCccCchhHHH
Confidence 45677889999999999999999999955 45567799999999999999999865 66776554 3457999999999
Q ss_pred ccchhhhhhhccc
Q psy1135 111 FLPMLQLIPFRIY 123 (124)
Q Consensus 111 ~~~~~~~~~~~~S 123 (124)
+.+++..+++++|
T Consensus 107 ~~~~~~~~~~~~S 119 (338)
T PHA03234 107 CVLFIYHASCSYS 119 (338)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888776
No 3
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.58 E-value=1.9e-14 Score=107.41 Aligned_cols=87 Identities=21% Similarity=0.414 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Q psy1135 34 NVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLP 113 (124)
Q Consensus 34 ~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~ 113 (124)
....+...+|.+++++|++||+++++++. +|++|+++|++++|||++|++. ++..|+++... .++|.+|+..|++..
T Consensus 96 ~~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~-~~~W~fg~~~Ck~~~ 172 (417)
T PHA02638 96 SISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE-FDQWIFGDFMCKVIS 172 (417)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH-hccccccccchhhHH
Confidence 35678889999999999999999998655 5889999999999999999986 56899987654 468999999999988
Q ss_pred hhhhhhhccc
Q psy1135 114 MLQLIPFRIY 123 (124)
Q Consensus 114 ~~~~~~~~~S 123 (124)
+....+.++|
T Consensus 173 ~l~~~~~~~S 182 (417)
T PHA02638 173 ASYYIGFFSN 182 (417)
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=105.38 Aligned_cols=86 Identities=26% Similarity=0.548 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccch
Q psy1135 35 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPM 114 (124)
Q Consensus 35 ~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~ 114 (124)
.+.+..+++.+++++|++||+++++++.++|++ ++.|+|+.|||+||++. .+.+|+.+... .++|.+|+..|++.++
T Consensus 27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~~ 103 (323)
T PHA02834 27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVLG 103 (323)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHHH
Confidence 455678999999999999999999988876554 57899999999999985 66899876544 4579999999999887
Q ss_pred hhhhhhccc
Q psy1135 115 LQLIPFRIY 123 (124)
Q Consensus 115 ~~~~~~~~S 123 (124)
....+..+|
T Consensus 104 ~~~~~~~~S 112 (323)
T PHA02834 104 VYFVGFFSN 112 (323)
T ss_pred HHHHHHHHH
Confidence 766665443
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.52 E-value=8.3e-14 Score=103.78 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccccc
Q psy1135 33 LNVYVFFIILYGVTILSGVALNIFAIYHIIVERLF--RDATCGYFINIALADIIKCMFVLPITLMVTLVQNWT--WGSFL 108 (124)
Q Consensus 33 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l--~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~--~g~~~ 108 (124)
...+.+..+++.+++++|++||++|++++.+++++ ++..++|+.|||++|++. ++.+|+.+.. +.|. .|...
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~---~~~~~~~g~~~ 104 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLS---NQGLLSGSVAG 104 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHh---cCccccCCCCe
Confidence 45677889999999999999999999876543333 456789999999999985 6689987643 3444 45789
Q ss_pred ccccchhhhhhhccc
Q psy1135 109 CYFLPMLQLIPFRIY 123 (124)
Q Consensus 109 C~~~~~~~~~~~~~S 123 (124)
|++.++...+++.+|
T Consensus 105 Ck~~~~l~~~~~~~S 119 (409)
T PHA03235 105 CKFASLLYYASCTVG 119 (409)
T ss_pred ehhHHHHHHHHHHHH
Confidence 999998887776654
No 6
>KOG4220|consensus
Probab=99.50 E-value=3.2e-16 Score=114.44 Aligned_cols=87 Identities=22% Similarity=0.398 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhh
Q psy1135 37 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 116 (124)
Q Consensus 37 ~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~ 116 (124)
+++.++.+.+.++.++||++|++.+.-.|++|+..|+|+++||+||++++.+++|+...+.+.|+|++|...|.+--.+.
T Consensus 31 v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalD 110 (503)
T KOG4220|consen 31 VFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALD 110 (503)
T ss_pred EeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999999999999999999999999877777
Q ss_pred hhhhccc
Q psy1135 117 LIPFRIY 123 (124)
Q Consensus 117 ~~~~~~S 123 (124)
++...+|
T Consensus 111 YvaSNAS 117 (503)
T KOG4220|consen 111 YVASNAS 117 (503)
T ss_pred HHhhhhh
Confidence 7665544
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.39 E-value=6.9e-13 Score=96.07 Aligned_cols=89 Identities=24% Similarity=0.472 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q psy1135 33 LNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFL 112 (124)
Q Consensus 33 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~ 112 (124)
...+.+...++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.++ ..|........++|.+|+..|++.
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~ 114 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIV 114 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHH
Confidence 34566778899999999999999999988887 9999999999999999998654 678776666667899999999999
Q ss_pred chhhhhhhccc
Q psy1135 113 PMLQLIPFRIY 123 (124)
Q Consensus 113 ~~~~~~~~~~S 123 (124)
.+.......+|
T Consensus 115 ~~~~~~~~~~S 125 (335)
T PHA03087 115 SGLYYIGFYNS 125 (335)
T ss_pred HHHHHHHHHHH
Confidence 88777665543
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.24 E-value=1.4e-11 Score=84.30 Aligned_cols=71 Identities=25% Similarity=0.485 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhccc
Q psy1135 53 LNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRIY 123 (124)
Q Consensus 53 gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~~~~~~~S 123 (124)
||++++.++.++|++|++.++|+.|||++|++.++...|..+.....++|.+++..|++..++......+|
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s 71 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSS 71 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999998888777777889999999999988777665543
No 9
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.37 E-value=1e-07 Score=67.18 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhh
Q psy1135 48 LSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLI 118 (124)
Q Consensus 48 ~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~~~ 118 (124)
++|++||...+.++.|+|++|+|.++++..+|++|++......|.... .+ ++-......|-.+.+...+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~-~~-~~~~i~~~~Cf~~~~~~~f 70 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLF-LF-RDHQITRSECFWQIFFYIF 70 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHH-HH-hheeccHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999988877777652 22 2223455577665554433
No 10
>KOG2087|consensus
Probab=98.10 E-value=9.3e-07 Score=64.37 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=70.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-----
Q psy1135 27 HIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLV-Q----- 100 (124)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~-~----- 100 (124)
..+.+....+.++-+.-+++..++++||.+|+......|...++..+++.|||.||+++++...-+..+.... +
T Consensus 15 ~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ 94 (363)
T KOG2087|consen 15 FNPCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKH 94 (363)
T ss_pred CCcHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHH
Confidence 3344444555566677889999999999999999998898899999999999999999887665554443322 1
Q ss_pred --ccccccccccccchhhhhhh
Q psy1135 101 --NWTWGSFLCYFLPMLQLIPF 120 (124)
Q Consensus 101 --~w~~g~~~C~~~~~~~~~~~ 120 (124)
.|. +...|++.+|+..++.
T Consensus 95 ai~W~-tg~gC~~aGflavFAS 115 (363)
T KOG2087|consen 95 AIDWQ-TGLGCPVAGFLAVFAS 115 (363)
T ss_pred HHhhh-hcCCCchHHHHHHHHH
Confidence 254 5569999998776653
No 11
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.59 E-value=0.0006 Score=49.39 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhh
Q psy1135 37 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 116 (124)
Q Consensus 37 ~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~ 116 (124)
....++..+...++++|-+.++....+.|++|++.+-++.-++++|++..+...... ..+.-.-+...|+++++..
T Consensus 7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~----~~~~~~~~s~lC~~Qafli 82 (303)
T PF05462_consen 7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT----LSPSAGENSFLCQFQAFLI 82 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCcchhhHhHHH
Confidence 345567777788999999999999999999999999999999999998665443322 1122234577999999988
Q ss_pred hhhhccc
Q psy1135 117 LIPFRIY 123 (124)
Q Consensus 117 ~~~~~~S 123 (124)
.....+|
T Consensus 83 q~f~~as 89 (303)
T PF05462_consen 83 QFFMLAS 89 (303)
T ss_pred HHhhHHH
Confidence 7776554
No 12
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=97.58 E-value=0.00055 Score=46.76 Aligned_cols=56 Identities=16% Similarity=0.054 Sum_probs=41.5
Q ss_pred CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhh
Q psy1135 65 RLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPF 120 (124)
Q Consensus 65 ~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~~~~~ 120 (124)
+++|.-.+-+++||.++|++.++..+.........+.-.-+...|.+++++...+.
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~ 85 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGD 85 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHH
Confidence 56667778899999999999888665544444444444456789999999887654
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=97.21 E-value=0.0041 Score=45.02 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q psy1135 35 VYVFFIILYGVTILSGVALNIFAIYHIIV---ERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 111 (124)
Q Consensus 35 ~~~~~~~~~~~~~~~g~~gN~lvi~~i~~---~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~ 111 (124)
...+..++..+.+++|++||+.++.+-.+ ++|.-.|.+..+.+||++.++......-.........+....+..++.
T Consensus 5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (303)
T PF05296_consen 5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKI 84 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHH
Confidence 34556788888999999999998876655 344457999999999999999665444333333322232233334444
Q ss_pred c
Q psy1135 112 L 112 (124)
Q Consensus 112 ~ 112 (124)
.
T Consensus 85 ~ 85 (303)
T PF05296_consen 85 I 85 (303)
T ss_pred H
Confidence 3
No 14
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=97.06 E-value=0.0011 Score=47.74 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1135 46 TILSGVALNIFAIYHIIVERLFRD-ATCGYFINIALADIIKCMFVLPITLMVTL 98 (124)
Q Consensus 46 ~~~~g~~gN~lvi~~i~~~~~l~~-~~~~~l~nLa~aDl~~~~~~~p~~~~~~~ 98 (124)
+.++|+++|..-+. ++.+|.+|+ +.|.+++.+|++|+...+...+.......
T Consensus 6 ~~~~g~~~N~~h~~-VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~ 58 (318)
T PF10324_consen 6 LSIFGLFINIFHLI-VLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFI 58 (318)
T ss_pred EeHHHHHHHHHHhh-hcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999887 666788885 89999999999999988888777664443
No 15
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.51 E-value=0.0068 Score=42.98 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHH
Q psy1135 46 TILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFV 89 (124)
Q Consensus 46 ~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~ 89 (124)
+.++|++.|.+++..+.|.+++|++-+.+-.+.|++|.+.++..
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~ 46 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIF 46 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999977643
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=95.19 E-value=0.26 Score=36.04 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHH
Q psy1135 34 NVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCM 87 (124)
Q Consensus 34 ~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~ 87 (124)
..+....+.+.+.+++-.+-+...+.++.+++..|.+.+-.+.=||+.|++-..
T Consensus 30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~ 83 (313)
T PF10321_consen 30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLF 83 (313)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHH
Confidence 345566777888888888899999999998888889999999999999999543
No 17
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=94.95 E-value=0.11 Score=37.35 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cccccccccc
Q psy1135 41 ILYGVTILSGVALNIFAIYHIIVERLF-RDATCGYFINIALADIIKCMFVLPITLMVTLVQNWT---WGSFLCYFLP 113 (124)
Q Consensus 41 ~~~~~~~~~g~~gN~lvi~~i~~~~~l-~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~---~g~~~C~~~~ 113 (124)
+++.+.+.+|++.|.+.++.+.++.-. -+...+++.|-|+.|++.+... .+........++. .....|+..+
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~-~~~q~R~i~~~~~~~~~~~GpC~~~~ 78 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISA-FLTQPRIIPNGTSIAVISYGPCRYFG 78 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCCCCcEEEEeeecceecC
Confidence 356788999999999999877776433 3668999999999999965533 3333333332222 2344666544
No 18
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=91.87 E-value=0.47 Score=33.92 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=35.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhh
Q psy1135 66 LFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLI 118 (124)
Q Consensus 66 ~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~~~ 118 (124)
.+..|++.-+.|||+|+.++.+.-...........+ .+++..||+..|..-+
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~~-~~~d~gCK~v~Y~~RV 57 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMAFFGWK-FFDDIGCKIVFYIYRV 57 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcc-cCCCceeeeeeeehHH
Confidence 455679999999999999976654332322222222 3689999988876543
No 19
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=90.25 E-value=0.2 Score=34.60 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=2.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--ccccccccchhhhhhhc
Q psy1135 44 GVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTW--GSFLCYFLPMLQLIPFR 121 (124)
Q Consensus 44 ~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~--g~~~C~~~~~~~~~~~~ 121 (124)
.+-..+++++-.+++......|++|+..+....||++++++..+..+.. ......... .+..|+..+.+.+....
T Consensus 8 ~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~---~~~~~~~~~~~~~~~C~~~a~~~hy~~l 84 (242)
T PF00002_consen 8 YVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG---ISQTFSPISTTNHCLCRAIAILLHYFFL 84 (242)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee---hhhccccccccccccchhhhhHhHHHHH
Confidence 3334444555555566566668888888888999999998865433221 111111111 22359988887666544
Q ss_pred c
Q psy1135 122 I 122 (124)
Q Consensus 122 ~ 122 (124)
+
T Consensus 85 a 85 (242)
T PF00002_consen 85 A 85 (242)
T ss_dssp -
T ss_pred H
Confidence 3
No 20
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=82.96 E-value=2.7 Score=26.52 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhCccCChhH
Q psy1135 49 SGVALNIFAIYHIIVERLFRDATC 72 (124)
Q Consensus 49 ~g~~gN~lvi~~i~~~~~l~~~~~ 72 (124)
+|++|=++.|+..+||+++|.+.+
T Consensus 75 aGvIg~Illi~y~irR~~Kk~~~~ 98 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKKSSSD 98 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHHHHHHHHhccCCCC
Confidence 355555555655556555555444
No 21
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=76.08 E-value=10 Score=27.17 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhCcc----CChhHHHHHHHHHHHHHHHHHHHHHH
Q psy1135 48 LSGVALNIFAIYHIIVERLF----RDATCGYFINIALADIIKCMFVLPIT 93 (124)
Q Consensus 48 ~~g~~gN~lvi~~i~~~~~l----~~~~~~~l~nLa~aDl~~~~~~~p~~ 93 (124)
++.+.-...++.++.+.|+. +++-+..+++-++||++..+......
T Consensus 6 ~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~ 55 (283)
T PF10323_consen 6 IVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQ 55 (283)
T ss_pred eehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777776654 59999999999999999766554433
No 22
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=75.63 E-value=13 Score=21.44 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1135 46 TILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLM 95 (124)
Q Consensus 46 ~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~ 95 (124)
..++|+++=..++-++..+.+.+.-.+.-.+|-+++-++....-.|+-.+
T Consensus 3 ~~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~i 52 (78)
T PF09882_consen 3 IIIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGAI 52 (78)
T ss_pred hHHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34567777777777777778888888999999999999977777776543
No 23
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=61.01 E-value=17 Score=27.26 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCccCC
Q psy1135 39 FIILYGVTILSGVALNIFAIYHIIVERLFRD 69 (124)
Q Consensus 39 ~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~ 69 (124)
.++..+++.++-++.-.++|+.++|.||.+.
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3566777777888888888888998877653
No 24
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=60.92 E-value=24 Score=22.43 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=3.2
Q ss_pred CChhHHHH
Q psy1135 68 RDATCGYF 75 (124)
Q Consensus 68 ~~~~~~~l 75 (124)
++|-+.|+
T Consensus 75 ~DPyh~YI 82 (129)
T PF02060_consen 75 HDPYHQYI 82 (129)
T ss_dssp --TTTTTS
T ss_pred cChHHHHh
Confidence 45555554
No 25
>PTZ00046 rifin; Provisional
Probab=58.17 E-value=20 Score=26.91 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCccC
Q psy1135 40 IILYGVTILSGVALNIFAIYHIIVERLFR 68 (124)
Q Consensus 40 ~~~~~~~~~~g~~gN~lvi~~i~~~~~l~ 68 (124)
++..+++.++-++.-.++|+.++|.||.+
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRKK 344 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 56667777777777778888888887765
No 26
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=57.01 E-value=17 Score=26.61 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCccC
Q psy1135 40 IILYGVTILSGVALNIFAIYHIIVERLFR 68 (124)
Q Consensus 40 ~~~~~~~~~~g~~gN~lvi~~i~~~~~l~ 68 (124)
++..+++.++-++.=.++|+.++|.||.+
T Consensus 257 ~I~aSiiaIliIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 257 AIIASIIAILIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666677888888877743
No 27
>KOG4564|consensus
Probab=55.49 E-value=1e+02 Score=24.26 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------c----cccccc
Q psy1135 41 ILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQN--------W----TWGSFL 108 (124)
Q Consensus 41 ~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~--------w----~~g~~~ 108 (124)
++|.+=.-++++.=++.+.++...|++|=..|+.-.||.++=++-++..+-...+....+. + .-+...
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 3555555555555555667777889999889999999999988876655444333221111 1 135678
Q ss_pred ccccchhhhh
Q psy1135 109 CYFLPMLQLI 118 (124)
Q Consensus 109 C~~~~~~~~~ 118 (124)
|+...++..-
T Consensus 229 Ck~~~~~~~Y 238 (473)
T KOG4564|consen 229 CKLLFVFFQY 238 (473)
T ss_pred HHHHHHHHHH
Confidence 8866654443
No 28
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=53.40 E-value=23 Score=19.06 Aligned_cols=19 Identities=32% Similarity=0.179 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1135 42 LYGVTILSGVALNIFAIYH 60 (124)
Q Consensus 42 ~~~~~~~~g~~gN~lvi~~ 60 (124)
+..++.+.-++||+.++--
T Consensus 7 lIIviVlgvIigNia~LK~ 25 (55)
T PF11446_consen 7 LIIVIVLGVIIGNIAALKY 25 (55)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 4444455556899887753
No 29
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=50.70 E-value=20 Score=25.97 Aligned_cols=62 Identities=24% Similarity=0.370 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC-ccCChhHHHHH----HHHHHHHHHHHHHHHHHHHHHhhc
Q psy1135 38 FFIILYGVTILSGVALNIFAIYHIIVER-LFRDATCGYFI----NIALADIIKCMFVLPITLMVTLVQ 100 (124)
Q Consensus 38 ~~~~~~~~~~~~g~~gN~lvi~~i~~~~-~l~~~~~~~l~----nLa~aDl~~~~~~~p~~~~~~~~~ 100 (124)
+....|-+++.++++-|.++++.++.+. |+.+ -.++++ ...++|+-.+...-|..+.....|
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~-fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~ag 76 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDN-FRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAG 76 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccc-hhhHHHHHHHHHHHhhhhhhhhccchhhcceeEE
Confidence 3456788899999999999997666544 4444 444443 367889998888888877665544
No 30
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=50.29 E-value=94 Score=22.38 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1135 39 FIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLM 95 (124)
Q Consensus 39 ~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~ 95 (124)
...+-.+........|...+..+...|+.|++--.++---.+.|.+.+....+....
T Consensus 8 v~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~ 64 (273)
T PF10316_consen 8 VSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIY 64 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHH
Confidence 334445557778889999998888777744544445555688999988877665443
No 31
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=49.76 E-value=31 Score=22.07 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q psy1135 32 LLNVYVFFIILYGVTILSGVALNIFAIYHIIVERL 66 (124)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~ 66 (124)
....++....+.++.+.+.+.|-+..+.-..|+++
T Consensus 96 ~~t~Yia~~~il~il~~i~is~~~~~~yr~~r~~~ 130 (139)
T PHA03099 96 TTTSYIPSPGIVLVLVGIIITCCLLSVYRFTRRTK 130 (139)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhhheeeeccc
Confidence 34556666677777776666665555543333333
No 32
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=45.29 E-value=49 Score=20.32 Aligned_cols=29 Identities=10% Similarity=0.159 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q psy1135 38 FFIILYGVTILSGVALNIFAIYHIIVERL 66 (124)
Q Consensus 38 ~~~~~~~~~~~~g~~gN~lvi~~i~~~~~ 66 (124)
.+..+++++.++.++.|++.-....|++|
T Consensus 2 ~Ll~il~llLll~l~asl~~wr~~~rq~k 30 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAWRMKQRQKK 30 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 35677888888888888776554444433
No 33
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=43.24 E-value=42 Score=16.32 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1135 38 FFIILYGVTILSGVALN 54 (124)
Q Consensus 38 ~~~~~~~~~~~~g~~gN 54 (124)
...+++..+++.|.+.|
T Consensus 10 ~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 10 TVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhccccCC
Confidence 34455666666666554
No 34
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=41.05 E-value=19 Score=21.42 Aligned_cols=6 Identities=67% Similarity=1.193 Sum_probs=2.8
Q ss_pred CCcchh
Q psy1135 1 MDGSKY 6 (124)
Q Consensus 1 m~~~~~ 6 (124)
||+.++
T Consensus 1 M~~~~~ 6 (91)
T PF01708_consen 1 MDSAKY 6 (91)
T ss_pred CCcccc
Confidence 554444
No 35
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=40.39 E-value=54 Score=16.78 Aligned_cols=23 Identities=9% Similarity=-0.125 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1135 40 IILYGVTILSGVALNIFAIYHIIVE 64 (124)
Q Consensus 40 ~~~~~~~~~~g~~gN~lvi~~i~~~ 64 (124)
..+..+++.+..+| +++++..++
T Consensus 11 ~~~~~v~~~~~F~g--i~~w~~~~~ 33 (49)
T PF05545_consen 11 RSIGTVLFFVFFIG--IVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHH--HHHHHHccc
Confidence 33444444444444 445544433
No 36
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=39.60 E-value=29 Score=24.81 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCccC-ChhHHHHHHHHHHHHHHHHHHH
Q psy1135 44 GVTILSGVALNIFAIYHIIVERLFR-DATCGYFINIALADIIKCMFVL 90 (124)
Q Consensus 44 ~~~~~~g~~gN~lvi~~i~~~~~l~-~~~~~~l~nLa~aDl~~~~~~~ 90 (124)
-+.++++++.|++.+..+.++.+++ ..-.+++.-.|+.|+..+..-.
T Consensus 6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~ 53 (307)
T PF10326_consen 6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDF 53 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHH
Confidence 3457789999999998877655444 4345556668888888766543
No 37
>KOG4193|consensus
Probab=37.21 E-value=1.2e+02 Score=24.72 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-ccc-cccccchhhhhhhc
Q psy1135 44 GVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTW-GSF-LCYFLPMLQLIPFR 121 (124)
Q Consensus 44 ~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~-g~~-~C~~~~~~~~~~~~ 121 (124)
.+-+.+.++.=++.+++.+..|++|+-.+...+||+++=++ +- ...+.+.|.- ... .|+..+.+.+++..
T Consensus 327 ~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l-~~-------l~fL~~~~~~~~~~~~C~~~a~llhff~L 398 (610)
T KOG4193|consen 327 TVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFL-AE-------LLFLLGIDRTSTSVVLCIAAAILLHFFFL 398 (610)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH-HH-------HHHhcccccccCcccccHHHHHHHHHHHH
Confidence 34444455555566666666677766668888899888222 11 2223334442 223 79988876665543
No 38
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=35.55 E-value=50 Score=21.57 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q psy1135 38 FFIILYGVTILSGVALNIFAIYHIIVERLF 67 (124)
Q Consensus 38 ~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l 67 (124)
+..+++++++++|+++-+.+......++..
T Consensus 63 IaGIVfgiVfimgvva~i~icvCmc~kn~r 92 (155)
T PF10873_consen 63 IAGIVFGIVFIMGVVAGIAICVCMCMKNSR 92 (155)
T ss_pred eeeeehhhHHHHHHHHHHHHHHhhhhhcCC
Confidence 445688999999999877766555544443
No 39
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=34.73 E-value=69 Score=26.32 Aligned_cols=36 Identities=11% Similarity=-0.134 Sum_probs=26.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1135 29 KPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVE 64 (124)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~ 64 (124)
+.....++.+-..++.++.+..++.|++.++.-.++
T Consensus 646 pd~~~lwrylg~~llLl~l~~~l~~n~~l~i~R~~~ 681 (705)
T PF07095_consen 646 PDRDTLWRYLGTTLLLLLLLGCLAINGVLAIRRYRR 681 (705)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456788888888888899999998876544443
No 40
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=32.44 E-value=43 Score=17.05 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCccCCh
Q psy1135 40 IILYGVTILSGVALNIFAIYHIIVERLFRDA 70 (124)
Q Consensus 40 ~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~ 70 (124)
..++....++|+.|-++-...=--.+++|.|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGppSk~LrDP 37 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGPPSKELRDP 37 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCCCccccCCc
Confidence 3455566677777754433322235666665
No 41
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=32.11 E-value=75 Score=16.00 Aligned_cols=19 Identities=21% Similarity=0.027 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy1135 45 VTILSGVALNIFAIYHIIV 63 (124)
Q Consensus 45 ~~~~~g~~gN~lvi~~i~~ 63 (124)
++.++|++|-+++...++|
T Consensus 13 VF~lVglv~i~iva~~iYR 31 (43)
T PF08114_consen 13 VFCLVGLVGIGIVALFIYR 31 (43)
T ss_pred ehHHHHHHHHHHHHHHHHH
Confidence 4455666666565554444
No 42
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=27.36 E-value=1.5e+02 Score=18.00 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCh
Q psy1135 32 LLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDA 70 (124)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~ 70 (124)
.+.+.+++..+..++..+|+..-+. ++ +.+...+|+.
T Consensus 15 L~PWeIfLItLasVvvavGl~aGLf-Fc-vR~~lslrn~ 51 (106)
T PF14654_consen 15 LKPWEIFLITLASVVVAVGLFAGLF-FC-VRNSLSLRNT 51 (106)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH-HH-hhhccccccc
Confidence 3567777777778888888765433 22 3445556654
No 43
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=26.54 E-value=1.2e+02 Score=21.88 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1135 37 VFFIILYGVTILSGVALN 54 (124)
Q Consensus 37 ~~~~~~~~~~~~~g~~gN 54 (124)
+-+++.++.+++++++|=
T Consensus 232 IslAiALG~v~ll~l~Gi 249 (281)
T PF12768_consen 232 ISLAIALGTVFLLVLIGI 249 (281)
T ss_pred EehHHHHHHHHHHHHHHH
Confidence 455788888999999883
No 44
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=26.25 E-value=1.9e+02 Score=19.24 Aligned_cols=22 Identities=32% Similarity=0.313 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1135 38 FFIILYGVTILSGVALNIFAIY 59 (124)
Q Consensus 38 ~~~~~~~~~~~~g~~gN~lvi~ 59 (124)
....+|+++.+.+++.=.+++-
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir 115 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIR 115 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3445666666666655445554
No 45
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=25.41 E-value=28 Score=21.42 Aligned_cols=14 Identities=36% Similarity=0.804 Sum_probs=11.8
Q ss_pred ccccccccccccch
Q psy1135 101 NWTWGSFLCYFLPM 114 (124)
Q Consensus 101 ~w~~g~~~C~~~~~ 114 (124)
+|+-|.++|.+++-
T Consensus 72 YWpPGkAlClFFGk 85 (126)
T COG2164 72 YWPPGKALCLFFGK 85 (126)
T ss_pred ccCCCcEEEEEecC
Confidence 79999999987764
No 46
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=24.99 E-value=44 Score=17.26 Aligned_cols=31 Identities=10% Similarity=-0.090 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCccCCh
Q psy1135 40 IILYGVTILSGVALNIFAIYHIIVERLFRDA 70 (124)
Q Consensus 40 ~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~ 70 (124)
..++....++|+.|-++-...=--.|.+|.|
T Consensus 10 ~~i~i~~lL~~~TgyaiYtaFGppSk~LrDP 40 (46)
T PRK13183 10 LAITILAILLALTGFGIYTAFGPPSKELDDP 40 (46)
T ss_pred HHHHHHHHHHHHhhheeeeccCCcccccCCc
Confidence 3455666677777765544322334556655
No 47
>KOG4349|consensus
Probab=24.94 E-value=1.9e+02 Score=18.39 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccC
Q psy1135 34 NVYVFFIILYGVTILSGVALNIFAIYHIIVERLFR 68 (124)
Q Consensus 34 ~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~ 68 (124)
.++.+.........++-+..-++.++...++|.-|
T Consensus 45 mwy~vFLWal~Ss~fih~~A~ilalFTLRkHkygr 79 (143)
T KOG4349|consen 45 MWYSVFLWALLSSMFIHLGATILALFTLRKHKYGR 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccce
Confidence 34444444444445555555556566555555555
No 48
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=24.46 E-value=3.4e+02 Score=21.03 Aligned_cols=80 Identities=15% Similarity=0.337 Sum_probs=42.0
Q ss_pred hHHhhhhhccCCCCcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hC-----ccCChhHHHHH
Q psy1135 6 YYESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIV----ER-----LFRDATCGYFI 76 (124)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~----~~-----~l~~~~~~~l~ 76 (124)
++....+..+--|-+-+.......+++ ..+.....+.+.+..+.++.+++.+.+++. +| +.+.....+..
T Consensus 6 ~~~~~~h~lPh~n~~f~~v~~~F~p~~-~~Y~~Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr~~~~~~k~~s~~c~~~ 84 (418)
T cd07912 6 WLVKLLHSLPHLNFTFHRVNSTFNPED-EIYQQSLLILASIPAACLILSLLFLLVYLITRCCDRKPTEERPRHSICCLKW 84 (418)
T ss_pred HHHHHHHhCCCCCceEEecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccHHHH
Confidence 444555555555544333333333332 233344566666666666677666653322 12 33344567888
Q ss_pred HHHHHHHHHH
Q psy1135 77 NIALADIIKC 86 (124)
Q Consensus 77 nLa~aDl~~~ 86 (124)
.|.+.-++..
T Consensus 85 sLiiltL~~~ 94 (418)
T cd07912 85 SLVIATLLCC 94 (418)
T ss_pred HHHHHHHHHH
Confidence 8888877743
No 49
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=24.28 E-value=1.7e+02 Score=17.68 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1135 39 FIILYGVTILSGVALNIFAIYHI 61 (124)
Q Consensus 39 ~~~~~~~~~~~g~~gN~lvi~~i 61 (124)
.-+=++++.++|.++-.++++++
T Consensus 70 r~~KmwilGlvgTi~gsliia~l 92 (98)
T PF11166_consen 70 RDIKMWILGLVGTIFGSLIIALL 92 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556778888888888887743
No 50
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=23.38 E-value=3e+02 Score=20.03 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHH
Q psy1135 38 FFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCM 87 (124)
Q Consensus 38 ~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~ 87 (124)
....+-.++.++|++.++..++...+++..|....+.+....++.++-+.
T Consensus 18 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~ 67 (324)
T PF10292_consen 18 LSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCT 67 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHH
Confidence 34455677788888888888887777888898899999888888887544
No 51
>PRK13664 hypothetical protein; Provisional
Probab=23.01 E-value=1.3e+02 Score=16.41 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1135 42 LYGVTILSGVALNIFA 57 (124)
Q Consensus 42 ~~~~~~~~g~~gN~lv 57 (124)
++.++.++|++-|+.=
T Consensus 10 ilill~lvG~i~N~iK 25 (62)
T PRK13664 10 ILVLVFLVGVLLNVIK 25 (62)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456677888888653
No 52
>PHA03164 hypothetical protein; Provisional
Probab=22.49 E-value=1.1e+02 Score=17.59 Aligned_cols=22 Identities=18% Similarity=0.082 Sum_probs=13.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHH
Q psy1135 66 LFRDATCGYFINIALADIIKCM 87 (124)
Q Consensus 66 ~l~~~~~~~l~nLa~aDl~~~~ 87 (124)
+.|+-+.+-+..||+|=+++.+
T Consensus 54 rRktftFlvLtgLaIamILfii 75 (88)
T PHA03164 54 RRKTFTFLVLTGLAIAMILFII 75 (88)
T ss_pred hhheeehHHHHHHHHHHHHHHH
Confidence 3345566777778888666443
No 53
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=22.41 E-value=1.5e+02 Score=19.19 Aligned_cols=26 Identities=23% Similarity=0.065 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhCccCChhHH
Q psy1135 48 LSGVALNIFAIYHIIVERLFRDATCG 73 (124)
Q Consensus 48 ~~g~~gN~lvi~~i~~~~~l~~~~~~ 73 (124)
++.+..-++.++++.+-|++|+..+-
T Consensus 33 ~f~~lWqglFiwlF~qIrkKr~v~de 58 (164)
T PF10624_consen 33 LFIVLWQGLFIWLFIQIRKKRNVSDE 58 (164)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 33445666778888888887766655
No 54
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=22.38 E-value=1.7e+02 Score=21.64 Aligned_cols=16 Identities=13% Similarity=-0.286 Sum_probs=12.5
Q ss_pred hCccCChhHHHHHHHH
Q psy1135 64 ERLFRDATCGYFINIA 79 (124)
Q Consensus 64 ~~~l~~~~~~~l~nLa 79 (124)
.-|+|++.|+.+..+|
T Consensus 142 ~lKR~T~~NiviGg~a 157 (304)
T COG0109 142 WLKRRTPQNIVIGGFA 157 (304)
T ss_pred hccCCcccceeeeecc
Confidence 3677899999888765
No 55
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=22.27 E-value=2.8e+02 Score=19.61 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=21.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy1135 67 FRDATCGYFINIALADIIKCMFVLPIT 93 (124)
Q Consensus 67 l~~~~~~~l~nLa~aDl~~~~~~~p~~ 93 (124)
.-++.++|..-|=++-+..++...+..
T Consensus 120 ~St~~D~f~lilLla~~~~Gl~~~~~~ 146 (228)
T COG2181 120 TSTPSDIFALLLLLAQLLLGLYATPFS 146 (228)
T ss_pred cCChhHHHHHHHHHHHHHhhhhhhhhc
Confidence 348899999888888888777776665
No 56
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=22.07 E-value=1.5e+02 Score=21.91 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCccC-ChhHHHHHHHHHHHHHHHHHH
Q psy1135 43 YGVTILSGVALNIFAIYHIIVERLFR-DATCGYFINIALADIIKCMFV 89 (124)
Q Consensus 43 ~~~~~~~g~~gN~lvi~~i~~~~~l~-~~~~~~l~nLa~aDl~~~~~~ 89 (124)
--+.++++.+-|-+-++.+..+|+.+ ..-.++++--|+-|++.++.-
T Consensus 11 Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~ 58 (310)
T PF10319_consen 11 PKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVD 58 (310)
T ss_pred HHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHH
Confidence 34556778899999999888888777 556677888999999977644
No 57
>CHL00020 psbN photosystem II protein N
Probab=22.01 E-value=39 Score=17.18 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCccCCh
Q psy1135 41 ILYGVTILSGVALNIFAIYHIIVERLFRDA 70 (124)
Q Consensus 41 ~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~ 70 (124)
.++....++|+.|-++-...=--.|++|.|
T Consensus 8 ~i~i~~ll~~~Tgy~iYtaFGppSk~LrDP 37 (43)
T CHL00020 8 AIFISGLLVSFTGYALYTAFGQPSKQLRDP 37 (43)
T ss_pred HHHHHHHHHHhhheeeeeccCCchhccCCc
Confidence 455555666666655443322234555655
No 58
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=21.93 E-value=2.5e+02 Score=22.01 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHH
Q psy1135 47 ILSGVALNIFAIYHIIVERLFRDATCGYFINIALADII 84 (124)
Q Consensus 47 ~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~ 84 (124)
+-=|++|-++.+++..|++|++- +.++|++
T Consensus 103 i~GGlIGg~l~~~~y~r~~ki~~--------~~~~D~~ 132 (460)
T PRK13108 103 IWGAVTLGVMGAWIGCRRCGIPL--------PVLLDAV 132 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHH
Confidence 33367777777776676666553 4566666
No 59
>CHL00024 psbI photosystem II protein I
Probab=21.61 E-value=36 Score=16.53 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1135 38 FFIILYGVTILSGVALN 54 (124)
Q Consensus 38 ~~~~~~~~~~~~g~~gN 54 (124)
...+++..+++.|.+.|
T Consensus 10 ~vV~ffvsLFifGFlsn 26 (36)
T CHL00024 10 TVVIFFVSLFIFGFLSN 26 (36)
T ss_pred hHHHHHHHHHHccccCC
Confidence 33456666677776554
No 60
>KOG3114|consensus
Probab=21.36 E-value=3.4e+02 Score=19.94 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=28.1
Q ss_pred CcchhHHhhhhhccCCCCcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1135 2 DGSKYYESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIY 59 (124)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gN~lvi~ 59 (124)
|+.++.+++.+..-..|...... ...++ -+-..=+...+++++++.||+....
T Consensus 87 Dt~qV~~Rl~~SliP~~~~~~~~--~~~PD---LYGPfWI~~TlVf~l~~~g~~~~~i 139 (290)
T KOG3114|consen 87 DTAQVRKRLKESLIPRNYVRDQI--QDNPD---LYGPFWITATLVFALAISGNLATFI 139 (290)
T ss_pred CHHHHHHHHHHhcCCcccccccc--CCCcc---ccccHHHHHHHHHHHHHcccHHHHH
Confidence 56777788777765522211111 11111 1112225667778888888866554
No 61
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=20.96 E-value=2.6e+02 Score=21.22 Aligned_cols=23 Identities=13% Similarity=0.080 Sum_probs=15.5
Q ss_pred CccCChhHHHHHHHHHHHHHHHH
Q psy1135 65 RLFRDATCGYFINIALADIIKCM 87 (124)
Q Consensus 65 ~~l~~~~~~~l~nLa~aDl~~~~ 87 (124)
+.+..+.-+-++.|+.+-++...
T Consensus 253 ~~l~m~~~Iq~~ML~~AalIll~ 275 (364)
T PF03605_consen 253 KPLSMTDAIQMFMLAAAALILLF 275 (364)
T ss_pred cCCCHHHHHHHHHHHHHHHHHee
Confidence 45566667777778887777433
No 62
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=20.60 E-value=3.6e+02 Score=19.86 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q psy1135 42 LYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINI-ALADIIKCMFVLPITLMVTLVQ 100 (124)
Q Consensus 42 ~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nL-a~aDl~~~~~~~p~~~~~~~~~ 100 (124)
-+.++.++|++.|.+..+.+.+.+. ...|.=-..| +++|.+..+..+-..+.-.+.+
T Consensus 126 ~ml~va~~GL~vN~~~a~ll~~~~~--~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~ 183 (296)
T COG1230 126 GMLVVAIIGLVVNLVSALLLHKGHE--ENLNMRGAYLHVLGDALGSVGVIIAAIVIRFTG 183 (296)
T ss_pred chHHHHHHHHHHHHHHHHHhhCCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456778899999998886666512 1122222222 2368886665555555555544
Done!