RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1135
(124 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 58.5 bits (142), Expect = 2e-11
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 16 SQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYF 75
S N + + ++P+ V + Y V +++ V N+ ++ I+ + R T YF
Sbjct: 12 SPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVT-NYF 70
Query: 76 I-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLI 118
+ N+A A+ F + + W +G F C F +
Sbjct: 71 LVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIA 114
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 52.1 bits (125), Expect = 4e-09
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 16 SQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYF 75
++N I P L + V + LY + G+ N +Y I+ + AT Y
Sbjct: 107 TRNAYIQKYLGAFLP--LGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYI 164
Query: 76 INIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLI 118
N+ALAD + + LP L+ W +G+ LC + +
Sbjct: 165 FNLALADTL-VLLTLPFQGTDILLGFWPFGNALCKTVIAIDYY 206
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 49.3 bits (117), Expect = 4e-08
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 14 MKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCG 73
M + D + P VF +++ G L + NI + I V R +
Sbjct: 1 MDDSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVN-N 59
Query: 74 YFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 109
YF+ ++A AD+I +F + + + T++ W G +C
Sbjct: 60 YFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVC 96
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 48.2 bits (114), Expect = 8e-08
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 16 SQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYF 75
+ N + + V I+ + +L+ V N+ I I + T YF
Sbjct: 20 APNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVT-NYF 78
Query: 76 I-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 109
I ++A AD++ + V+P L++ WT+G+F C
Sbjct: 79 ITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWC 113
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 47.7 bits (113), Expect = 1e-07
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 26 PHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIK 85
P + + + LY + + G+ N +Y I+ + AT Y N+ALAD +
Sbjct: 7 PQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADAL- 65
Query: 86 CMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLI 118
LP + L+ W +G+ LC + +
Sbjct: 66 ATSTLPFQSVNYLMGTWPFGNILCKIVISIDYY 98
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 46.7 bits (110), Expect = 3e-07
Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 1 MDGSKYYESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYH 60
D SL++ N+T + + ++ + Y IL+ V N
Sbjct: 4 DDDDGAPASLSQLSSHLNYTCGAENS-TGASQARPHAYYALSYCALILAIVFGNGLVCMA 62
Query: 61 IIVERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLV-QNWTWGSFLC 109
++ ER + T Y + ++A+AD++ V+P + + + W + C
Sbjct: 63 VLKERALQTTT-NYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICC 112
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 46.2 bits (109), Expect = 4e-07
Identities = 18/74 (24%), Positives = 37/74 (50%)
Query: 36 YVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLM 95
+ +++ L V LN+ +Y + ER Y +++++AD+I V+P+ ++
Sbjct: 8 LMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNIL 67
Query: 96 VTLVQNWTWGSFLC 109
L+ W+ G LC
Sbjct: 68 YLLMSKWSLGRPLC 81
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 45.5 bits (108), Expect = 7e-07
Identities = 17/102 (16%), Positives = 32/102 (31%)
Query: 15 KSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGY 74
K+ F P + + I+ G +N +Y + + R
Sbjct: 17 KTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYI 76
Query: 75 FINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 116
+N+A+AD+ TL +L + +G C
Sbjct: 77 LLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFA 118
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 44.1 bits (103), Expect = 3e-06
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 17 QNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI 76
N+T K + + IL I+ NIF + I + F YFI
Sbjct: 47 YNYTGKLNISADKENSIKLTSVVFILICCFIILE---NIFVLLTIWKTKKFHRPM-YYFI 102
Query: 77 -NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 111
N+AL+D++ + L+ + + +
Sbjct: 103 GNLALSDLLAGVAYTANLLL-SGATTYKLTPAQWFL 137
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 42.0 bits (98), Expect = 1e-05
Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 37 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI-NIALADIIKCMFVLPITLM 95
+I + + + N+ + + + ++ T YF+ ++A ADI + +P +
Sbjct: 22 SVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVT-NYFVVSLAAADIAVGVLAIPFAIT 80
Query: 96 VTLVQNWTWGSFLCYF 111
++ + C F
Sbjct: 81 IST--GFCAACHGCLF 94
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 41.8 bits (98), Expect = 1e-05
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 35 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITL 94
+F +Y + L+G+ N I + ++ R T Y +++++AD++ + LP
Sbjct: 47 NKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLL-FVITLPF-W 104
Query: 95 MVTLVQNWTWGSFLCYFLPMLQLI 118
V V NW +G+FLC + ++ +
Sbjct: 105 AVDAVANWYFGNFLCKAVHVIYTV 128
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 41.8 bits (98), Expect = 2e-05
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Query: 1 MDGSKYYESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYH 60
+ S++Y K T V I+ + +L+ V N+ I
Sbjct: 147 LAKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITA 206
Query: 61 IIVERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 109
I + T YFI ++A AD++ + V+P L + WT+G+F C
Sbjct: 207 IAKFERLQTVT-NYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWC 255
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 40.4 bits (94), Expect = 5e-05
Identities = 9/73 (12%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 37 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMV 96
+I + + + N+ + + + ++ T + +++A ADI + +P + +
Sbjct: 32 SVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI 91
Query: 97 TLVQNWTWGSFLC 109
+ + C
Sbjct: 92 ST--GFCAACHGC 102
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 39.5 bits (92), Expect = 9e-05
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 35 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMF-VLPIT 93
VY I G+ + G N IY + + + IN+A +D + P+
Sbjct: 33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLM 92
Query: 94 LMVTLVQNWTWGSFLCYF 111
+ ++ W +G C
Sbjct: 93 TISCFLKKWIFGFAACKV 110
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 32.4 bits (74), Expect = 0.021
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 35 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI-NIALADIIKCMFVLPIT 93
+L + +L VA N+ I I + + T FI ++A AD++ + V+P
Sbjct: 10 WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLT-NLFITSLACADLVVGLLVVPFG 68
Query: 94 LMVTLVQNWTWGSFLCYF 111
+ + W WGSFLC
Sbjct: 69 ATLVVRGTWLWGSFLCEL 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.38
Identities = 18/145 (12%), Positives = 36/145 (24%), Gaps = 43/145 (29%)
Query: 6 YYESLAEGMKSQNFTIDFTKPHIKPTLLN--------VYVFF-----IILYGVTILSGVA 52
Y + + F K L + F Y L
Sbjct: 126 YITARIMAKRP------FDKKS-NSALFRAVGEGNAQLVAIFGGQGNTDDY-FEELR--- 174
Query: 53 LNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWG------- 105
+++ YH++V L + + + + V L + W
Sbjct: 175 -DLYQTYHVLVGDLIKFSA-ETLSELI-RTTLDAEKVFTQGLN---ILEWLENPSNTPDK 228
Query: 106 SFLCYF---LPM---LQLIPFRIYC 124
+L P+ +QL + +
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTA 253
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 25.6 bits (57), Expect = 5.2
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 60 HIIVERLFRDATCGYFINIALAD--IIKCMFVLPITLMVTLV 99
HI+V R+ N D I+ FV+P +++
Sbjct: 233 HIVVPRVHTQKQAYILQN---EDKRIV---FVIPWMDEFSII 268
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.335 0.148 0.478
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,968,344
Number of extensions: 107201
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 23
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.9 bits)