BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11350
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 140/277 (50%), Gaps = 25/277 (9%)
Query: 131 RNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTF 190
RN +L + LT G + + +FSPD Q +A+AS KLW +L+QT
Sbjct: 127 RNGQLLQTLT---------GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 176
Query: 191 RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF 250
GH +V + F P +G ++AS + D +VKLW+ + L L GH V + F
Sbjct: 177 TGHSSSVWGVAFSP---DGQ--TIASASDDKTVKLWNRNGQL-LQTLTGHSS-SVRGVAF 229
Query: 251 HPSGRFLGTCCWDHSWRL----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 306
P G+ + + D + +L L L GH V+ + F P G+ + + D + +L
Sbjct: 230 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKL 288
Query: 307 WDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS 366
W+ N GQ + GH V+ ++F DG +A+ D ++W+ R G+ + L GH S
Sbjct: 289 WNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSS 346
Query: 367 VFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT 403
V+ V FSPDG +A+ S+D VK+W+ R +LL+ T
Sbjct: 347 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 382
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 135/272 (49%), Gaps = 24/272 (8%)
Query: 131 RNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTF 190
RN +L + LT G + + +FSPD Q +A+AS KLW +L+QT
Sbjct: 86 RNGQLLQTLT---------GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 135
Query: 191 RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF 250
GH +V + F P +G ++AS + D +VKLW+ + L L GH V + F
Sbjct: 136 TGHSSSVWGVAFSP---DGQ--TIASASDDKTVKLWNRNGQL-LQTLTGHSS-SVWGVAF 188
Query: 251 HPSGRFLGTCCWDHSWRL----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 306
P G+ + + D + +L L L GH V + F P G+ + + D + +L
Sbjct: 189 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKL 247
Query: 307 WDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS 366
W+ N GQ + GH V ++F+ DG +A+ D ++W+ R G+ + L GH S
Sbjct: 248 WNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 305
Query: 367 VFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
V+ V FSPDG +A+ S+D VK+W+ + L
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWNRNGQHL 337
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 128/250 (51%), Gaps = 16/250 (6%)
Query: 158 CSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC 217
+FSPD Q +A+AS KLW +L+QT GH +V + F P +G ++AS
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP---DGQ--TIASA 75
Query: 218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPLA 273
+ D +VKLW+ + L L GH V + F P G+ + + D + +L L
Sbjct: 76 SDDKTVKLWNRNGQL-LQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 133
Query: 274 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGD 333
L GH V + F P G+ + + D + +LW+ N GQ + GH V+ ++F D
Sbjct: 134 TLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPD 191
Query: 334 GSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL 393
G +A+ D ++W+ R G+ + L GH SV V FSPDG +A+ S+D VK+W+
Sbjct: 192 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 249
Query: 394 RKRRLLKWCT 403
R +LL+ T
Sbjct: 250 RNGQLLQTLT 259
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 129/260 (49%), Gaps = 21/260 (8%)
Query: 137 KHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCN 196
+HL +L+ + S V +FSPD Q +A+AS KLW +L+QT GH +
Sbjct: 335 QHLQTLTGHSSSVWG------VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 387
Query: 197 VGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRF 256
V + F P +G ++AS + D +VKLW+ + L L GH V + F P +
Sbjct: 388 VRGVAFSP---DGQ--TIASASDDKTVKLWNRNGQL-LQTLTGHSS-SVWGVAFSPDDQT 440
Query: 257 LGTCCWDHSWRL----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG 312
+ + D + +L L L GH V + F P G+ + + D + +LW+ N G
Sbjct: 441 IASASDDKTVKLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-G 498
Query: 313 QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF 372
Q + GH V ++F DG +A+ D ++W+ R G+ + L GH SV+ V F
Sbjct: 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 557
Query: 373 SPDGYHLATGSEDNAVKIWD 392
SPDG +A+ S D VK+W+
Sbjct: 558 SPDGQTIASASSDKTVKLWN 577
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 275 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG 334
LE H V + F P G+ + + D + +LW+ N GQ + GH V+ ++F DG
Sbjct: 12 LEAHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDG 69
Query: 335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
+A+ D ++W+ R G+ + L GH SV V FSPDG +A+ S+D VK+W+ R
Sbjct: 70 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-R 127
Query: 395 KRRLLKWCT 403
+LL+ T
Sbjct: 128 NGQLLQTLT 136
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 98
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 99 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 135
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 136 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 177
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 238 LKLWDYSKGKCLK 250
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 144
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 204 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 263
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 264 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 323 NDKTIKLW 330
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 41 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 98
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 271
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 272 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS-TACHPTENIIAS 318
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 44 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 100
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 101 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 137
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 138 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 179
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 239
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 240 LKLWDYSKGKCLK 252
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 146
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 206 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 265
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 266 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 324
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 325 NDKTIKLW 332
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 43 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 100
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 215 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 273
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 274 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS-TACHPTENIIAS 320
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 16 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 72
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 73 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 109
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 110 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 151
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 152 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 211
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 212 LKLWDYSKGKCLK 224
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 118
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 178 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 237
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 238 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 296
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 297 NDKTIKLW 304
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 15 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 72
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 245
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 246 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 292
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 76
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 77 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 113
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 114 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 215
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 216 LKLWDYSKGKCLK 228
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 122
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 242 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 301 NDKTIKLW 308
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 19 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 76
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 249
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 250 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 296
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 37 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSD 93
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 94 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 130
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 131 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 172
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 173 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 232
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 233 LKLWDYSKGKCLK 245
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 139
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 199 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 258
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 259 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 317
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 318 NDKTIKLW 325
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 36 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 93
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 208 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 266
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 267 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 313
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 25 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 81
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 82 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 118
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 119 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 160
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 220
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 221 LKLWDYSKGKCLK 233
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 127
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 187 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 246
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 247 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 305
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 306 NDKTIKLW 313
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 24 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 81
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 142 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 196 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 254
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 255 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 301
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 21 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 77
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 78 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 114
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 115 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 156
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 157 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 216
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 217 LKLWDYSKGKCLK 229
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 123
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 183 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 242
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 243 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 301
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 302 NDKTIKLW 309
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 20 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 77
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 138 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 192 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 250
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 251 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 297
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 82
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 83 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 119
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 120 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 222 LKLWDYSKGKCLK 234
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 128
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 248 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 307 NDKTIKLW 314
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 25 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 82
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 255
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 256 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 302
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 82
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 83 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 119
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 120 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 222 LKLWDYSKGKCLK 234
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 128
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 248 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 307 NDKTIKLW 314
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 25 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 82
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 255
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 256 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 302
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 76
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 77 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 113
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 114 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 215
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 216 LKLWDYSKGKCLK 228
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 122
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 242 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 301 NDKTIKLW 308
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 19 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 76
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 249
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 250 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 296
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 82
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 83 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 119
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 120 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 222 LKLWDYSKGKCLK 234
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 128
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 248 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 307 NDKTIKLW 314
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 25 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 82
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 255
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 256 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 302
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 19 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 75
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 76 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 112
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 113 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 154
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 155 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 214
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 215 LKLWDYSKGKCLK 227
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 121
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 240
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 241 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 299
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 300 NDKTIKLW 307
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 18 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 75
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 136 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 190 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 248
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 249 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 295
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 79
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 80 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 116
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G + H PV +
Sbjct: 117 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 219 LKLWDYSKGKCLK 231
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 125
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 245 ANFSVTG-GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 304 NDKTIKLW 311
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKF 288
+ L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 19 MFTLAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAW 76
Query: 289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRV 348
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 349 WDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
WD++TG C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 252
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 253 KW-IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 299
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSD 79
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 80 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 116
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 117 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 219 LKLWDYSKGKCLK 231
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 22 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 79
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 16/241 (6%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 125
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED 385
S G G + +G D +W+L+T + L+GH V S P +A+ + +
Sbjct: 245 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 386 N 386
N
Sbjct: 304 N 304
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 252
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 253 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 299
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSD 79
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 80 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 116
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 117 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 219 LKLWDYSKGKCLK 231
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 22 LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 79
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 16/241 (6%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 125
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D++ +LWD ++G+ + GH YC+
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED 385
S G G + +G D +W+L+T + L+GH V S P +A+ + +
Sbjct: 245 ANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 386 N 386
N
Sbjct: 304 N 304
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 252
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 253 KW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 299
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A++S L K+W + + +T GH + + + S+
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 79
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 80 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 116
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G + H PV +
Sbjct: 117 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDND 218
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 219 LKLWDYSKGKCLK 231
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 18/248 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++S DS + +AS K+W V + ++T +GH V F+P + +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-----I 125
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTP-- 271
S + D SV++W + L L H VS + F+ G + + +D R+ DT
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 272 --LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM- 328
L L + VS +KF P+G+++ D+ +LWD ++G+ + GH YC+
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 329 ---SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS-- 383
S G G + +G D +W+L+T + L+GH V S P +A+ +
Sbjct: 245 ANFSVTG-GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 384 EDNAVKIW 391
D +K+W
Sbjct: 304 NDKTIKLW 311
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKF 288
+ L GH VS +KF P+G +L + D ++ D + GH+ +S + +
Sbjct: 19 MFTLAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAW 76
Query: 289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRV 348
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 349 WDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
WD++TG C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA 210
D P+S+ FSP+ +++ A+ KLW + + ++T+ GH N F G
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGG 252
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+ S ++D V +W+L + L+GH +S HP+ + +
Sbjct: 253 KW-IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST-ACHPTENIIAS 299
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T+ +S FSP+ + +A +S L K+W + + +T GH + + + S+
Sbjct: 23 AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSD 79
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ L S + D ++K+W + L L+GH + CC
Sbjct: 80 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 116
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
F+P + + +D S R+WD+ G+ + H PV +
Sbjct: 117 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
F DGS++ + D R+WD +G+C+ ++ V V FSP+G ++ + DN
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 388 VKIWDLRKRRLLK 400
+K+WD K + LK
Sbjct: 219 LKLWDYSKGKCLK 231
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 18/253 (7%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
G IS ++S DS + +AS K+W V + ++T +GH V F+P +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL- 124
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL- 268
+ S + D SV++W + L L H VS + F+ G + + +D R+
Sbjct: 125 ----IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 269 DTP----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKP 324
DT L L + VS +KF P+G+++ D++ +LWD ++G+ + GH
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 325 VYCM----SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLA 380
YC+ S G G + +G D +W+L+T + L+GH V S P +A
Sbjct: 240 KYCIFANFSVTG-GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 381 TGS--EDNAVKIW 391
+ + D +K+W
Sbjct: 299 SAALENDKTIKLW 311
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
L GH VS +KF P+G +L D ++ D + GH+ +S + +
Sbjct: 22 LAGHTK-AVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 79
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
L + D + ++WD++ G+ + +GH V+C +F +++ +G D R+WD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+TG+C+ L H V +V F+ DG + + S D +IWD + LK
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 10/175 (5%)
Query: 233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPF-----RVSRIK 287
P LEGH F VS + +G F + WDHS RL L N + F V +
Sbjct: 59 PDRRLEGHSAF-VSDVALSNNGNFAVSASWDHSLRLWN-LQNGQCQYKFLGHTKDVLSVA 116
Query: 288 FHPSGRFLGTCCWDHSWRLWDL-NQGQEVLHQEGHGKPVYCMSFQG--DGSVVATGGLDA 344
F P R + + D++ R+W++ + L + H V C+ F D V+ +GG D
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDN 176
Query: 345 FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
+VWDL TGR + L+GH V SV SPDG A+ +D ++WDL K L
Sbjct: 177 LVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL 231
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 22/260 (8%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
G + +S + S + +ASW +LW + + F GH +V ++ F P +
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQ- 123
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPS--GRFLGTCCWDH--- 264
+ S +D ++++W++ + G VS ++F PS + + WD+
Sbjct: 124 ----IVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 265 SWRLDTP--LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG 322
W L T + +L+GH + V+ + P G + D RLWDL +G E L + G
Sbjct: 180 VWDLATGRLVTDLKGHTNY-VTSVTVSPDGSLCASSDKDGVARLWDLTKG-EALSEMAAG 237
Query: 323 KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL----EGHLKSV---FSVDFSPD 375
P+ + F + + R++DL I+ L +G K V S+ +S D
Sbjct: 238 APINQICFSPNRYWMCAATEKGI-RIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSAD 296
Query: 376 GYHLATGSEDNAVKIWDLRK 395
G L +G DN +++W + +
Sbjct: 297 GSTLYSGYTDNVIRVWGVSE 316
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 110/269 (40%), Gaps = 30/269 (11%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
G T + SF + +A+ S KLW E ++T GHD NV ++ P
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH- 206
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---W 266
+ S ++D ++K+W + + GH + V ++ + G + +C D + W
Sbjct: 207 ----IVSASRDKTIKMWEVQTGYCVKTFTGHREW-VRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 267 RLDTPLANLEGHEPFRVSR-IKFHPS--------------------GRFLGTCCWDHSWR 305
+ T E E V I + P G FL + D + +
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 306 LWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK 365
+WD++ G ++ GH V + F G + + D RVWD + RC+ L H
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 381
Query: 366 SVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
V S+DF ++ TGS D VK+W+ R
Sbjct: 382 FVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 117/276 (42%), Gaps = 32/276 (11%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
G P++ F P + +AS K+W + +T +GH +V I F G
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF---DHSG 162
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---W 266
+ LASC+ D ++KLW + + GH+ VS + P+G + + D + W
Sbjct: 163 KL--LASCSADMTIKLWDFQGFECIRTMHGHD-HNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 267 RLDTP--LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKP 324
+ T + GH + V ++ + G + +C D + R+W + + H
Sbjct: 220 EVQTGYCVKTFTGHREW-VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 278
Query: 325 VYCMSFQGD--------------------GSVVATGGLDAFGRVWDLRTGRCIMFLEGHL 364
V C+S+ + G + +G D ++WD+ TG C+M L GH
Sbjct: 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 338
Query: 365 KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
V V F G + + ++D +++WD + +R +K
Sbjct: 339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 275 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG 334
L GH V+R+ FHP + + D + ++WD G +GH V +SF G
Sbjct: 104 LSGHRS-PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
++A+ D ++WD + CI + GH +V SV P+G H+ + S D +K+W+++
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Query: 395 KRRLLK-------WCTQLLPNSIGV 412
+K W + PN G
Sbjct: 223 TGYCVKTFTGHREWVRMVRPNQDGT 247
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 94/228 (41%), Gaps = 33/228 (14%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHS---WRLDTP--LANLEGHEPFRVSRIKFHPS 291
L GH V+R+ FHP + + D + W +T L+GH V I F S
Sbjct: 104 LSGHRS-PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHS 161
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
G+ L +C D + +LWD + + GH V +S +G + + D ++W++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW---------DLRKRRLLKWC 402
+TG C+ GH + V V + DG +A+ S D V++W +LR+ R + C
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 281
Query: 403 TQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLL 450
P ES I S K+ +P P LL
Sbjct: 282 ISWAP-----------------ESSYSSISEATGSETKKSGKPGPFLL 312
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 245 VSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCC 299
+ + F P G+FL T D R+ + L+GHE + + + PSG L +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGS 184
Query: 300 WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF 359
D + R+WDL GQ L GDG +A G LD RVWD TG +
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 360 LE-------GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
L+ GH SV+SV F+ DG + +GS D +VK+W+L+
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 126/301 (41%), Gaps = 40/301 (13%)
Query: 126 ATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE 185
R + + K +L+ S D S C FSPD + +AT + L ++W + +
Sbjct: 98 VARLSDDSAANKDPENLNTSSSPSSDLYIRSVC-FSPDGKFLATGAEDRLIRIWDIENRK 156
Query: 186 LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRV 245
+V +GH+ ++ ++++ P + L S + D +V++W L T +L V
Sbjct: 157 IVMILQGHEQDIYSLDYFPSGDK-----LVSGSGDRTVRIWDL--RTGQCSLTLSIEDGV 209
Query: 246 SRIKFHPS-GRFLGTCCWDHS---W---------RLDTPLANLEGHEPFRVSRIKFHPSG 292
+ + P G+++ D + W RLD+ + GH+ V + F G
Sbjct: 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDG 268
Query: 293 RFLGTCCWDHSWRLWDL------------NQGQEVLHQEGHGKPVYCMSFQGDGSVVATG 340
+ + + D S +LW+L N G + GH V ++ + + +G
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328
Query: 341 GLDAFGRVWDLRTGRCIMFLEGHLKSVFSV------DFSPDGYHLATGSEDNAVKIWDLR 394
D WD ++G ++ L+GH SV SV P+ ATGS D +IW +
Sbjct: 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Query: 395 K 395
K
Sbjct: 389 K 389
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 31/170 (18%)
Query: 286 IKFHPSGRFLGTCCWDHS--WRLWD------------LNQGQEVLHQEGHGKP---VYCM 328
+KF G +L T C + +R+ D N+ E L+ + +
Sbjct: 70 VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 129
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAV 388
F DG +ATG D R+WD+ + +M L+GH + ++S+D+ P G L +GS D V
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 389 KIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSA 438
+IWDLR + C+ L GVT++ +++PG G I++
Sbjct: 190 RIWDLRTGQ----CSLTLSIEDGVTTV----------AVSPGDGKYIAAG 225
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 19/97 (19%)
Query: 321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS-------------- 366
H V C+ F DG +ATG + +V+ + G + L +
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 367 ----VFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
+ SV FSPDG LATG+ED ++IWD+ R+++
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 158
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 16/225 (7%)
Query: 131 RNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTF 190
+N+ + S++++ T +S CSF+ + TAS G C LW V +L+Q+F
Sbjct: 139 KNENMAAKKKSVAMH------TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192
Query: 191 RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF 250
GH +V ++ P + + S D +W + + E HE V+ +++
Sbjct: 193 HGHGADVLCLDLAPSETGN---TFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRY 248
Query: 251 HPSGRFLGTCCWDHSWRLDTPLANLE----GHEP--FRVSRIKFHPSGRFLGTCCWDHSW 304
+PSG + D + RL A+ E E F S + F SGR L D++
Sbjct: 249 YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI 308
Query: 305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVW 349
+WD+ +G V GH V + DG+ +G D RVW
Sbjct: 309 NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGD--GSVVATG 340
+S F S + T D + LWD+ GQ + GHG V C+ G+ +G
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 341 GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR 397
G D VWD+R+G+C+ E H V SV + P G A+GS+D +++DLR R
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 319 EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH 378
+GHG V CM + D + + D VWD T + V + ++P G
Sbjct: 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA 120
Query: 379 LATGSEDNAVKIWDL 393
+A G DN ++ L
Sbjct: 121 IACGGLDNKCSVYPL 135
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 20/244 (8%)
Query: 163 DSQHVATASWSGLCKLWTVPE--CELVQTFRGHDCNVGAIEF-HPLPSEGAVCSLASCAQ 219
+S+ V T S L K+W + +L + GH V +++ H LP AS +
Sbjct: 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIA------ASSSL 100
Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-------PL 272
D ++LW L+ + +++ P + F P ++L T H +++
Sbjct: 101 DAHIRLWDLENGKQIKSIDA-GPVDAWTLAFSPDSQYLATGT--HVGKVNIFGVESGKKE 157
Query: 273 ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG 332
+L+ F +S I + P G++L + D ++D+ G+ + EGH P+ ++F
Sbjct: 158 YSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 216
Query: 333 DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
D ++ T D + +++D++ L GH V +V F PD H + S D +VK+WD
Sbjct: 217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276
Query: 393 LRKR 396
+ R
Sbjct: 277 VGTR 280
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 44/174 (25%)
Query: 267 RLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEV----------- 315
RLD + LEGH+ V + + + D RLWDL G+++
Sbjct: 69 RLDLQWS-LEGHQ-LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126
Query: 316 -------------------------------LHQEGHGKPVYCMSFQGDGSVVATGGLDA 344
+ GK + +++ DG +A+G +D
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186
Query: 345 FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
++D+ TG+ + LEGH + S+ FSPD L T S+D +KI+D++ L
Sbjct: 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 14/198 (7%)
Query: 159 SFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA 218
+FSPDSQ++AT + G ++ V + + + +I + P +G LAS A
Sbjct: 129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP---DGKY--LASGA 183
Query: 219 QDGSVKLWSLDKDTPLANLEGHE-PFRVSRIKFHPSGRFLGTCCWDHSWRL-DTPLAN-- 274
DG + ++ + L LEGH P R + F P + L T D ++ D AN
Sbjct: 184 IDGIINIFDIATGKLLHTLEGHAMPIR--SLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241
Query: 275 --LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG 332
L GH + V + F P + D S ++WD+ V H V+ + + G
Sbjct: 242 GTLSGHASW-VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG 300
Query: 333 DGSVVATGGLDAFGRVWD 350
+GS + + G D ++D
Sbjct: 301 NGSKIVSVGDDQEIHIYD 318
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP 204
G PI +FSPDSQ + TAS G K++ V L T GH V + F P
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 313 QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM--FLEGHLKSVFSV 370
QE H + + + + + V TG LD +VW R R + LEGH V SV
Sbjct: 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSV 86
Query: 371 DFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
D S A+ S D +++WDL + +K
Sbjct: 87 DISHTLPIAASSSLDAHIRLWDLENGKQIK 116
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 214 LASCAQDGSVKLWSLDKDTPLANL---EGHEPFRVSRIKFHPSGRFLG-------TCCWD 263
LASC D +++W + D+ + EGH+ V ++ + P G +L TC W
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQ-RTVRKVAWSPCGNYLASASFDATTCIWK 89
Query: 264 HSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE---VLHQEG 320
+ + LEGHE V + + PSG L TC D S +W++++ E V
Sbjct: 90 KNQDDFECVTTLEGHEN-EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148
Query: 321 HGKPVYCMSFQGDGSVVATGGLDAFGRVW--DLRTGRCIMFLEGHLKSVFSVDFSPDGYH 378
H + V + + ++A+ D +++ + C LEGH +V+S+ F P G
Sbjct: 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR 208
Query: 379 LATGSEDNAVKIW 391
LA+ S+D V+IW
Sbjct: 209 LASCSDDRTVRIW 221
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 111/254 (43%), Gaps = 47/254 (18%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLW--TVPECELVQTFRGHDCNVGAIEFHPLPS 207
G R + ++SP ++A+AS+ +W + E V T GH+ V ++ + P
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP--- 115
Query: 208 EGAVCSLASCAQDGSVKLWSLDKDTP---LANLEGHEPFRVSRIKFHPSGRFLGTCCWDH 264
G + LA+C++D SV +W +D++ ++ L H V + +HPS L + +D
Sbjct: 116 SGNL--LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVVWHPSQELLASASYDD 172
Query: 265 SWRLD-------TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLH 317
+ +L A LEGHE V + F PSG+ L +C D + R+W
Sbjct: 173 TVKLYREEEDDWVCCATLEGHES-TVWSLAFDPSGQRLASCSDDRTVRIWR--------- 222
Query: 318 QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG-HLKSVFSVDFSPDG 376
G+ VA G D + +CI L G H ++++ + +
Sbjct: 223 ----------QYLPGNEQGVACSGSDP--------SWKCICTLSGFHSRTIYDIAWCQLT 264
Query: 377 YHLATGSEDNAVKI 390
LAT D+A+++
Sbjct: 265 GALATACGDDAIRV 278
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 272 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ---EGHGKPVYCM 328
L + H R + ++P+G L +C D R+W + EGH + V +
Sbjct: 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTG--RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN 386
++ G+ +A+ DA +W C+ LEGH V SV ++P G LAT S D
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 387 AVKIWDL 393
+V +W++
Sbjct: 128 SVWVWEV 134
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 109/233 (46%), Gaps = 27/233 (11%)
Query: 177 KLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN 236
K+W E + T GH V + H + S ++D ++++W ++ L
Sbjct: 182 KVWNAETGECIHTLYGHTSTVRCMHLHEK-------RVVSGSRDATLRVWDIETGQCLHV 234
Query: 237 LEGHEPFRVSRIK-FHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHP 290
L GH V+ ++ GR + + +D ++ +T L L+GH RV ++F
Sbjct: 235 LMGH----VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF-- 287
Query: 291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWD 350
G + + D S R+WD+ G + GH M + + ++ +G D+ ++WD
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWD 345
Query: 351 LRTGRCIMFLEG---HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
++TG+C+ L+G H +V + F+ + + T S+D VK+WDL+ ++
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIR 396
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 28/232 (12%)
Query: 177 KLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN 236
K+W+ + ++T GH V + + + S + D ++K+W+ + +
Sbjct: 142 KVWSAVTGKCLRTLVGHTGGVWSSQMRDNI-------IISGSTDRTLKVWNAETGECIHT 194
Query: 237 LEGHEPFRVSRIKFHP----SGRFLGTCCWDHSWRLDTP--LANLEGHEPFRVSRIK-FH 289
L GH V + H SG T W ++T L L GH V+ ++
Sbjct: 195 LYGHTS-TVRCMHLHEKRVVSGSRDATL---RVWDIETGQCLHVLMGH----VAAVRCVQ 246
Query: 290 PSGRFLGTCCWDHSWRLWDLNQGQEVLHQ-EGHGKPVYCMSFQGDGSVVATGGLDAFGRV 348
GR + + +D ++WD + + LH +GH VY + F DG V +G LD RV
Sbjct: 247 YDGRRVVSGAYDFMVKVWD-PETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRV 303
Query: 349 WDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
WD+ TG CI L GH ++ + L +G+ D+ VKIWD++ + L+
Sbjct: 304 WDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQ 353
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 15/115 (13%)
Query: 278 HEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVV 337
H P++ + I+ H D +WR +L + + + H + C+ F G+ +
Sbjct: 86 HSPWKSAYIRQHRI---------DTNWRRGELKSPKVLKGHDDH--VITCLQFCGNR--I 132
Query: 338 ATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
+G D +VW TG+C+ L GH V+S + + +GS D +K+W+
Sbjct: 133 VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN 185
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 94/249 (37%), Gaps = 64/249 (25%)
Query: 120 HLHIPEATRTARNQELQ----KHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGL 175
HLH +R+ L+ + L + V R + Y D + V + ++ +
Sbjct: 206 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-----DGRRVVSGAYDFM 260
Query: 176 CKLWTVPECEL-VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPL 234
K+W PE E + T +GH V +++F + + S + D S+++W ++ +
Sbjct: 261 VKVWD-PETETCLHTLQGHTNRVYSLQFDGI-------HVVSGSLDTSIRVWDVETGNCI 312
Query: 235 ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRF 294
L GH+ + +E + VS
Sbjct: 313 HTLTGHQSL----------------------------TSGMELKDNILVS---------- 334
Query: 295 LGTCCWDHSWRLWDLNQGQEVLHQEG---HGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
G D + ++WD+ GQ + +G H V C+ F + + V T D ++WDL
Sbjct: 335 -GNA--DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDL 389
Query: 352 RTGRCIMFL 360
+TG I L
Sbjct: 390 KTGEFIRNL 398
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 41/250 (16%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
G + + C+ + D + +ASW +LW V E Q F GH +V +++ S
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM- 121
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
+ S ++D ++K+W++ K LA L GH + VS+++ P
Sbjct: 122 ----IISGSRDKTIKVWTI-KGQCLATLLGHNDW-VSQVRVVP----------------- 158
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
+E + +G D + W+LNQ Q GH + ++
Sbjct: 159 --------NEKADDDSVTIISAGN-------DKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
DG+++A+ G D +W+L + + L VFS+ FSP+ Y LA + +K
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIK 261
Query: 390 IWDLRKRRLL 399
++ L + L+
Sbjct: 262 VFSLDPQYLV 271
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 18/178 (10%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLD-------TPLANLEGHEPFRVSRI 286
LEGH + S L + D SW+L P+ + +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDC 71
Query: 287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG 346
G + + WD + RLWD+ G+ GH V + S++ +G D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 347 RVWDLRTGRCIMFLEGHLKSVFSVDFSP------DGYHLATGSEDNAVKIWDLRKRRL 398
+VW ++ G+C+ L GH V V P D + + D VK W+L + ++
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 41/250 (16%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
G + + C+ + D + +ASW +LW V E Q F GH +V +++ S
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX- 121
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
+ S ++D ++K+W++ K LA L GH + VS+++ P
Sbjct: 122 ----IISGSRDKTIKVWTI-KGQCLATLLGHNDW-VSQVRVVP----------------- 158
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
+E + +G D + W+LNQ Q GH + ++
Sbjct: 159 --------NEKADDDSVTIISAGN-------DKXVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
DG+++A+ G D +W+L + L VFS+ FSP+ Y LA + +K
Sbjct: 204 ASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIK 261
Query: 390 IWDLRKRRLL 399
++ L + L+
Sbjct: 262 VFSLDPQYLV 271
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 13/147 (8%)
Query: 275 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLWDLNQ--GQEVLHQEGHGKPVYCMS 329
LEGH + S L + D SW+L +Q G V +GH V +
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
DG+ + D R+WD+ TG GH V SVD + +GS D +K
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 390 IWDLRKRRLLK------WCTQ--LLPN 408
+W ++ + L W +Q ++PN
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPN 159
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 74/219 (33%), Gaps = 60/219 (27%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLD-------TPLANLEGHEPFRVSRI 286
LEGH + S L + D SW+L P+ + +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDC 71
Query: 287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG 346
G + + WD + RLWD+ G+ GH V + S + +G D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 347 RVWDLRTGRCIMFLEGHLKSVFSV------------------------------------ 370
+VW ++ G+C+ L GH V V
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEA 190
Query: 371 DF------------SPDGYHLATGSEDNAVKIWDLRKRR 397
DF SPDG +A+ +D + +W+L ++
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK 229
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 41/250 (16%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
G + + C+ + D + +ASW +LW V E Q F GH +V +++ S
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM- 121
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
+ S ++D ++K+W++ K LA L GH + VS+++ P
Sbjct: 122 ----IISGSRDKTIKVWTI-KGQCLATLLGHNDW-VSQVRVVP----------------- 158
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
+E + +G D + W+LNQ Q GH + ++
Sbjct: 159 --------NEKADDDSVTIISAGN-------DKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
DG+++A+ G D +W+L + + L VFS+ FSP+ Y LA + +K
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIK 261
Query: 390 IWDLRKRRLL 399
++ L + L+
Sbjct: 262 VFSLDPQYLV 271
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 18/178 (10%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLD-------TPLANLEGHEPFRVSRI 286
LEGH + S L + D SW+L P+ + +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDC 71
Query: 287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG 346
G + + WD + RLWD+ G+ GH V + S++ +G D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 347 RVWDLRTGRCIMFLEGHLKSVFSVDFSP------DGYHLATGSEDNAVKIWDLRKRRL 398
+VW ++ G+C+ L GH V V P D + + D VK W+L + ++
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 41/250 (16%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
G + + C+ + D + +ASW +LW V E Q F GH +V +++ S
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM- 121
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
+ S ++D ++K+W++ K LA L GH + VS+++ P
Sbjct: 122 ----IISGSRDKTIKVWTI-KGQCLATLLGHNDW-VSQVRVVP----------------- 158
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
+E + +G D + W+LNQ Q GH + ++
Sbjct: 159 --------NEKADDDSVTIISAGN-------DKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
DG+++A+ G D +W+L + + L VFS+ FSP+ Y LA + +K
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIK 261
Query: 390 IWDLRKRRLL 399
++ L + L+
Sbjct: 262 VFSLDPQYLV 271
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 18/178 (10%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLD-------TPLANLEGHEPFRVSRI 286
LEGH + S L + D SW+L P+ + +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDC 71
Query: 287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG 346
G + + WD + RLWD+ G+ GH V + S++ +G D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 347 RVWDLRTGRCIMFLEGHLKSVFSVDFSP------DGYHLATGSEDNAVKIWDLRKRRL 398
+VW ++ G+C+ L GH V V P D + + D VK W+L + ++
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 41/250 (16%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
G + + C+ + D + +ASW +LW V E Q F GH +V +++ S
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM- 121
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
+ S ++D ++K+W++ K LA L GH + VS+++ P
Sbjct: 122 ----IISGSRDKTIKVWTI-KGQCLATLLGHNDW-VSQVRVVP----------------- 158
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
+E + +G D + W+LNQ Q GH + ++
Sbjct: 159 --------NEKADDDSVTIISAGN-------DKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
DG+++A+ G D +W+L + + L VFS+ FSP+ Y LA + +K
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIK 261
Query: 390 IWDLRKRRLL 399
++ L + L+
Sbjct: 262 VFSLDPQYLV 271
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 18/178 (10%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLD-------TPLANLEGHEPFRVSRI 286
LEGH + S L + D SW+L P+ + +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDC 71
Query: 287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG 346
G + + WD + RLWD+ G+ GH V + S++ +G D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 347 RVWDLRTGRCIMFLEGHLKSVFSVDFSP------DGYHLATGSEDNAVKIWDLRKRRL 398
+VW ++ G+C+ L GH V V P D + + D VK W+L + ++
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 41/250 (16%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
G + + C+ + D + +ASW +LW V E Q F GH +V +++ S
Sbjct: 57 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM- 115
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
+ S ++D ++K+W++ K LA L GH + VS+++ P
Sbjct: 116 ----IISGSRDKTIKVWTI-KGQCLATLLGHNDW-VSQVRVVP----------------- 152
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
+E + +G D + W+LNQ Q GH + ++
Sbjct: 153 --------NEKADDDSVTIISAGN-------DKMVKAWNLNQFQIEADFIGHNSNINTLT 197
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
DG+++A+ G D +W+L + + L VFS+ FSP+ Y LA + +K
Sbjct: 198 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIK 255
Query: 390 IWDLRKRRLL 399
++ L + L+
Sbjct: 256 VFSLDPQYLV 265
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 18/178 (10%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLD-------TPLANLEGHEPFRVSRI 286
LEGH + S L + D SW+L P+ + +GH V
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDC 65
Query: 287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG 346
G + + WD + RLWD+ G+ GH V + S++ +G D
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 347 RVWDLRTGRCIMFLEGHLKSVFSVDFSP------DGYHLATGSEDNAVKIWDLRKRRL 398
+VW ++ G+C+ L GH V V P D + + D VK W+L + ++
Sbjct: 126 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 182
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 49/245 (20%)
Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ 219
S D Q + SW G +LW + + F GH +V ++ F + + S ++
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ-----IVSASR 492
Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHE 279
D ++KLW+ LG C + S EG E
Sbjct: 493 DRTIKLWNT----------------------------LGECKYTIS----------EGGE 514
Query: 280 PFR--VSRIKFHPSGR--FLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS 335
R VS ++F P+ + + WD + ++W+L+ + GH V ++ DGS
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 574
Query: 336 VVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
+ A+GG D +WDL G+ + LE + + ++ FSP+ Y L +E + +KIWDL
Sbjct: 575 LCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAATE-HGIKIWDLES 632
Query: 396 RRLLK 400
+ +++
Sbjct: 633 KSIVE 637
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 97/229 (42%), Gaps = 21/229 (9%)
Query: 186 LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD-----TPLANLEGH 240
L T R H V AI P + A + S ++D S+ LW L KD L GH
Sbjct: 374 LKGTMRAHTDMVTAIA---TPIDNADI-IVSASRDKSIILWKLTKDDKAYGVAQRRLTGH 429
Query: 241 EPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE-----GHEPFRVSRIKFHPSGRFL 295
F V + G+F + WD RL A + GH V + F R +
Sbjct: 430 SHF-VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK-DVLSVAFSLDNRQI 487
Query: 296 GTCCWDHSWRLWD-LNQGQEVLHQ--EGHGKPVYCMSFQGDG--SVVATGGLDAFGRVWD 350
+ D + +LW+ L + + + + EGH V C+ F + + + D +VW+
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 351 LRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
L + L GH V +V SPDG A+G +D V +WDL + + L
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 34/230 (14%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLW-TVPECE--LVQTFRGHDCNVGAIEFHPL 205
VG T+ + +FS D++ + +AS KLW T+ EC+ + + GH V + F P
Sbjct: 469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528
Query: 206 PSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS 265
+ ++ S + D +VK+W+L + L GH + VS + P G + D
Sbjct: 529 TLQ---PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY-VSTVAVSPDGSLCASGGKDGV 584
Query: 266 ---WRL--DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEV----- 315
W L L +LE + + + F P+ R+ +H ++WDL V
Sbjct: 585 VLLWDLAEGKKLYSLEANS--VIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKV 641
Query: 316 -LHQEGHG-----------KPVYCMS--FQGDGSVVATGGLDAFGRVWDL 351
L E K +YC S + DGS + +G D RVW +
Sbjct: 642 DLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 8/150 (5%)
Query: 250 FHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW 304
F G+ + +C D + ++ L ++ HE V F RF+ TC D
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHED-EVLCCAFSTDDRFIATCSVDKKV 687
Query: 305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS--VVATGGLDAFGRVWDLRTGRCIMFLEG 362
++W+ G+ V + H + V C F ++ATG D F ++WDL C + G
Sbjct: 688 KIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFG 747
Query: 363 HLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
H SV FSPD LA+ S D +K+WD
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 105/260 (40%), Gaps = 31/260 (11%)
Query: 158 CSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC 217
C+FS D + +AT S K+W ELV T+ H V F + LA+
Sbjct: 669 CAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHF---TNSSHHLLLATG 725
Query: 218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTPLANLE 276
+ D +KLW L++ + GH V+ +F P + L +C D + +L D AN
Sbjct: 726 SSDCFLKLWDLNQKECRNTMFGHTN-SVNHCRFSPDDKLLASCSADGTLKLWDATSANER 784
Query: 277 GH---EPFRVSRIKFHPSGRFLGTCCWDHSWR---------------LWDLNQGQEV--L 316
+ F ++ + CC SW L+D++ + +
Sbjct: 785 KSINVKQFFLNLEDPQEDMEVIVKCC---SWSADGARIMVAAKNKIFLFDIHTSGLLGEI 841
Query: 317 HQEGHGKPVYC-MSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD 375
H H YC S Q +VVA +W+ + + GHL V V FSPD
Sbjct: 842 HTGHHSTIQYCDFSPQNHLAVVALSQYCV--ELWNTDSRSKVADCRGHLSWVHGVMFSPD 899
Query: 376 GYHLATGSEDNAVKIWDLRK 395
G T S+D +++W+ +K
Sbjct: 900 GSSFLTSSDDQTIRLWETKK 919
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 26/253 (10%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
+S C SP Q++A +G ++ + + Q+ H V I+F +L
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEK-----TL 1024
Query: 215 ASCAQDGSVKLWSLDKDTPLANLEGHEP----FRVSRIKFHPSGRFLGTCCWDHSWRLDT 270
S + D +++W+ D + L GH+ FR+ + S F GT W + T
Sbjct: 1025 ISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLLSWSFDGTV---KVWNIIT 1080
Query: 271 --PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
+ H+ +S H + +F T D + ++W + + GH V C
Sbjct: 1081 GNKEKDFVCHQGTVLSCDISHDATKFSSTSA-DKTAKIWSFDLLLPLHELRGHNGCVRCS 1139
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL-----EG---HLKSVFSVDFSPDGYHLA 380
+F D +++ATG + R+W++ G + EG H V + FSPDG L
Sbjct: 1140 AFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI 1199
Query: 381 TGSEDNAVKIWDL 393
+ +K W++
Sbjct: 1200 SAG--GYIKWWNV 1210
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 101/248 (40%), Gaps = 17/248 (6%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLC-KLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G I YC FSP + H+A + S C +LW V RGH V + F P S
Sbjct: 844 GHHSTIQYCDFSPQN-HLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGS- 901
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
S + + D +++LW K + + + V F + + DH RL
Sbjct: 902 ----SFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVV---FQENEVMVLAV--DHIRRL 952
Query: 269 ---DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPV 325
+ ++ +VS P +++ + + + +L + + H K V
Sbjct: 953 QLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTV 1012
Query: 326 YCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED 385
+ + F D + + DA +VW+ + +CI FL GH ++V + L + S D
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNS-RLLSWSFD 1070
Query: 386 NAVKIWDL 393
VK+W++
Sbjct: 1071 GTVKVWNI 1078
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLA 380
H VY F DG +A+ G D +V+ TG ++ ++ H V FS D +A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 381 TGSEDNAVKIWD 392
T S D VKIW+
Sbjct: 680 TCSVDKKVKIWN 691
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 104/301 (34%), Gaps = 62/301 (20%)
Query: 147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFH--- 203
+ G T +++C FSPD + +A+ S G KLW ++ NV +
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSI-----NVKQFFLNLED 798
Query: 204 PLPSEGAVCSLASCAQDGS---------VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSG 254
P + S + DG+ + L+ + L + + F P
Sbjct: 799 PQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQN 858
Query: 255 RF----LGTCCWDHSWRLD--TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD 308
L C + W D + +A+ GH + V + F P G T D + RLW+
Sbjct: 859 HLAVVALSQYCVE-LWNTDSRSKVADCRGHLSW-VHGVMFSPDGSSFLTSSDDQTIRLWE 916
Query: 309 -----------LNQGQEVLHQEG----------------HGKP----------VYCMSFQ 331
L Q +V+ QE +G+ V C
Sbjct: 917 TKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLS 976
Query: 332 GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
+A G + + +L R H K+V+ + F+ D L + S+D +++W
Sbjct: 977 PHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVW 1036
Query: 392 D 392
+
Sbjct: 1037 N 1037
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 27/221 (12%)
Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR 247
+T RGH + A+ + L S +QDG + +W D+ N P R S
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRL-----LVSASQDGKLIIW----DSYTTNKVHAIPLRSSW 110
Query: 248 I---KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEP-FRVSRIKFHPSG-----RFLG-- 296
+ + PSG ++ D+ + NL+ E RVSR +G RFL
Sbjct: 111 VMTCAYAPSGNYVACGGLDNI----CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 166
Query: 297 ---TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
T D + LWD+ GQ+ GH V +S D + +G DA ++WD+R
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
G C GH + ++ F P+G ATGS+D +++DLR
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T +S C F D+Q + T+S C LW + + TF GH +V ++ P
Sbjct: 151 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 209
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
S A D S KLW + + GHE ++ I F P+G T D + RL
Sbjct: 210 -----FVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRL 263
Query: 269 DTPLANLE----GHEPF--RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG 322
A+ E H+ ++ + F SGR L D + +WD + GH
Sbjct: 264 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 323
Query: 323 KPVYCMSFQGDGSVVATGGLDAFGRVWD 350
V C+ DG VATG D+F ++W+
Sbjct: 324 NRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 19/249 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECE----LVQTFRGHDCNVGAIEFHPLPSEGA 210
+ C+++P +VA +C ++ + E + + GH + F L
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQI 168
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-- 268
V S + D + LW ++ GH V + P R + D S +L
Sbjct: 169 VTS----SGDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 269 ---DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVL--HQEGHGK 323
GHE ++ I F P+G T D + RL+DL QE++ +
Sbjct: 224 VREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 282
Query: 324 PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS 383
+ +SF G ++ G D VWD L GH V + + DG +ATGS
Sbjct: 283 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 342
Query: 384 EDNAVKIWD 392
D+ +KIW+
Sbjct: 343 WDSFLKIWN 351
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
V + P R + D S +LWD+ +G GH + + F +G+ ATG
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 257
Query: 343 DAFGRVWDLRTGRCIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
DA R++DLR + +M + + + SV FS G L G +D +WD K
Sbjct: 258 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 312
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 280 PFRVSRI---KFHPSGRFLGTCCWDHSWRLWDLN--QGQEVLHQE--GHGKPVYCMSFQG 332
P R S + + PSG ++ D+ +++L +G + +E GH + C F
Sbjct: 105 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 164
Query: 333 DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
D +V + G D +WD+ TG+ GH V S+ +PD +G+ D + K+WD
Sbjct: 165 DNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 393 LRK 395
+R+
Sbjct: 224 VRE 226
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 319 EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH 378
GH +Y M + D ++ + D +WD T + + V + ++P G +
Sbjct: 63 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 122
Query: 379 LATGSEDNAVKIWDLRKR 396
+A G DN I++L+ R
Sbjct: 123 VACGGLDNICSIYNLKTR 140
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 27/221 (12%)
Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR 247
+T RGH + A+ + L S +QDG + +W D+ N P R S
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRL-----LVSASQDGKLIIW----DSYTTNKVHAIPLRSSW 99
Query: 248 I---KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEP-FRVSRIKFHPSG-----RFLG-- 296
+ + PSG ++ D+ + NL+ E RVSR +G RFL
Sbjct: 100 VMTCAYAPSGNYVACGGLDNI----CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 297 ---TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
T D + LWD+ GQ+ GH V +S D + +G DA ++WD+R
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
G C GH + ++ F P+G ATGS+D +++DLR
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T +S C F D+Q + T+S C LW + + TF GH +V ++ P
Sbjct: 140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
S A D S KLW + + GHE ++ I F P+G T D + RL
Sbjct: 199 -----FVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRL 252
Query: 269 DTPLANLE----GHEPF--RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG 322
A+ E H+ ++ + F SGR L D + +WD + GH
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
Query: 323 KPVYCMSFQGDGSVVATGGLDAFGRVWD 350
V C+ DG VATG D+F ++W+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 19/249 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECE----LVQTFRGHDCNVGAIEFHPLPSEGA 210
+ C+++P +VA +C ++ + E + + GH + F L
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQI 157
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-- 268
V S + D + LW ++ GH V + P R + D S +L
Sbjct: 158 VTS----SGDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 269 ---DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVL--HQEGHGK 323
GHE ++ I F P+G T D + RL+DL QE++ +
Sbjct: 213 VREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 324 PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS 383
+ +SF G ++ G D VWD L GH V + + DG +ATGS
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Query: 384 EDNAVKIWD 392
D+ +KIW+
Sbjct: 332 WDSFLKIWN 340
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
V + P R + D S +LWD+ +G GH + + F +G+ ATG
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 343 DAFGRVWDLRTGRCIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
DA R++DLR + +M + + + SV FS G L G +D +WD K
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 280 PFRVSRI---KFHPSGRFLGTCCWDHSWRLWDLN--QGQEVLHQE--GHGKPVYCMSFQG 332
P R S + + PSG ++ D+ +++L +G + +E GH + C F
Sbjct: 94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 333 DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
D +V + G D +WD+ TG+ GH V S+ +PD +G+ D + K+WD
Sbjct: 154 DNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 393 LRK 395
+R+
Sbjct: 213 VRE 215
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 319 EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH 378
GH +Y M + D ++ + D +WD T + + V + ++P G +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 379 LATGSEDNAVKIWDLRKR 396
+A G DN I++L+ R
Sbjct: 112 VACGGLDNICSIYNLKTR 129
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 27/221 (12%)
Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR 247
+T RGH + A+ + L S +QDG + +W D+ N P R S
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRL-----LVSASQDGKLIIW----DSYTTNKVHAIPLRSSW 99
Query: 248 I---KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEP-FRVSRIKFHPSG-----RFLG-- 296
+ + PSG ++ D+ + NL+ E RVSR +G RFL
Sbjct: 100 VMTCAYAPSGNYVACGGLDNI----CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 297 ---TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
T D + LWD+ GQ+ GH V +S D + +G DA ++WD+R
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
G C GH + ++ F P+G ATGS+D +++DLR
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T +S C F D+Q + T+S C LW + + TF GH +V ++ P
Sbjct: 140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
S A D S KLW + + GHE ++ I F P+G T D + RL
Sbjct: 199 -----FVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRL 252
Query: 269 DTPLANLE----GHEPF--RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG 322
A+ E H+ ++ + F SGR L D + +WD + GH
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
Query: 323 KPVYCMSFQGDGSVVATGGLDAFGRVWD 350
V C+ DG VATG D+F ++W+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 19/249 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECE----LVQTFRGHDCNVGAIEFHPLPSEGA 210
+ C+++P +VA +C ++ + E + + GH + F L
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQI 157
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-- 268
V S + D + LW ++ GH V + P R + D S +L
Sbjct: 158 VTS----SGDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 269 ---DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVL--HQEGHGK 323
GHE ++ I F P+G T D + RL+DL QE++ +
Sbjct: 213 VREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 324 PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS 383
+ +SF G ++ G D VWD L GH V + + DG +ATGS
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Query: 384 EDNAVKIWD 392
D+ +KIW+
Sbjct: 332 WDSFLKIWN 340
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
V + P R + D S +LWD+ +G GH + + F +G+ ATG
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 343 DAFGRVWDLRTGRCIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
DA R++DLR + +M + + + SV FS G L G +D +WD K
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 280 PFRVSRI---KFHPSGRFLGTCCWDHSWRLWDLN--QGQEVLHQE--GHGKPVYCMSFQG 332
P R S + + PSG ++ D+ +++L +G + +E GH + C F
Sbjct: 94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 333 DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
D +V + G D +WD+ TG+ GH V S+ +PD +G+ D + K+WD
Sbjct: 154 DNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 393 LRK 395
+R+
Sbjct: 213 VRE 215
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 319 EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH 378
GH +Y M + D ++ + D +WD T + + V + ++P G +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 379 LATGSEDNAVKIWDLRKR 396
+A G DN I++L+ R
Sbjct: 112 VACGGLDNICSIYNLKTR 129
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 250 FHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW 304
F G+ + +C D + ++ L +++ HE V F ++ TC D
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSDDSYIATCSADKKV 681
Query: 305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS--VVATGGLDAFGRVWDLRTGRCIMFLEG 362
++WD G+ V + H + V C F + ++ATG D F ++WDL C + G
Sbjct: 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741
Query: 363 HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
H SV FSPD LA+ S D +++WD+R
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 103/260 (39%), Gaps = 31/260 (11%)
Query: 158 CSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC 217
C+FS D ++AT S K+W +LV T+ H V F ++ LA+
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF---TNKSNHLLLATG 719
Query: 218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTPLANLE 276
+ D +KLW L++ + GH V+ +F P L +C D + RL D AN
Sbjct: 720 SNDFFLKLWDLNQKECRNTMFGHTN-SVNHCRFSPDDELLASCSADGTLRLWDVRSAN-- 776
Query: 277 GHEPFRVSRIKFHPSGR--------FLGTCCWD-----------HSWRLWDLNQGQEV-- 315
E ++ +F S + C W + L+D++ +
Sbjct: 777 --ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834
Query: 316 LHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD 375
+H H YC F + +W++ + + GHL V V FSPD
Sbjct: 835 IHTGHHSTIQYC-DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD 893
Query: 376 GYHLATGSEDNAVKIWDLRK 395
G T S+D +++W+ +K
Sbjct: 894 GSSFLTASDDQTIRVWETKK 913
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 288 FHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGR 347
F G+ + +C D + +++ G+++L + H V C +F D S +AT D +
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 348 VWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH--LATGSEDNAVKIWDLRKR 396
+WD TG+ + + H + V F+ H LATGS D +K+WDL ++
Sbjct: 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 104/264 (39%), Gaps = 39/264 (14%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLC-KLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G I YC FSP H+A + S C +LW + V RGH V + F P S
Sbjct: 838 GHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS- 895
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
S + + D ++++W K + + + V + + +
Sbjct: 896 ----SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV---------------VFQENETM 936
Query: 269 DTPLANLEGHEPF--RVSRIKFHPSGRFLGTCCW------------DHSWRLWDLNQGQE 314
+ N+ G + + +I + P + + CC D + ++ +L +
Sbjct: 937 VLAVDNIRGLQLIAGKTGQIDYLPEAQ-VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 995
Query: 315 VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP 374
GH K V + F DG + + D+ +VW+ +TG + FL+ H ++V
Sbjct: 996 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQ 1054
Query: 375 DGYHLATGSEDNAVKIWDLRKRRL 398
D L + S D VK+W++ R+
Sbjct: 1055 DS-RLLSWSFDGTVKVWNVITGRI 1077
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 110/297 (37%), Gaps = 54/297 (18%)
Query: 147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLP 206
+ G T +++C FSPD + +A+ S G +LW V ++ + + E P
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS-EDPPED 796
Query: 207 SEGAV--CSLAS------CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRF-- 256
E V CS ++ A V L+ + LA + + F P
Sbjct: 797 VEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV 856
Query: 257 --LGTCCWDHSWRLDTPL--ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD---- 308
L C + W +D+ L A+ GH + V + F P G T D + R+W+
Sbjct: 857 IALSQYCVE-LWNIDSRLKVADCRGHLSW-VHGVMFSPDGSSFLTASDDQTIRVWETKKV 914
Query: 309 -------LNQGQEVLHQEGH----------------GKP----------VYCMSFQGDGS 335
L Q +V+ QE GK V C
Sbjct: 915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE 974
Query: 336 VVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
VA G D ++ +L R GH K+V + F+ DG L + SED+ +++W+
Sbjct: 975 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 13/218 (5%)
Query: 198 GAIEFHPLPSEGAVC------SLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFH 251
G I++ P C +A +DG++K+ L + ++ GH+ V I+F
Sbjct: 954 GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK-AVRHIQFT 1012
Query: 252 PSGRFLGTCCWD---HSWRLDT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLW 307
G+ L + D W T L+ H+ V + R L + +D + ++W
Sbjct: 1013 ADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE-TVKDFRLLQDSRLL-SWSFDGTVKVW 1070
Query: 308 DLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSV 367
++ G+ H V + D + ++ D ++W + L+GH V
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1130
Query: 368 FSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL 405
FS DG LATG ++ ++IW++ +LL C +
Sbjct: 1131 RCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/371 (20%), Positives = 132/371 (35%), Gaps = 67/371 (18%)
Query: 152 TRPISYCSFSPDSQHV--ATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
+ ++ C F+ S H+ AT S KLW + + E T GH +V F P
Sbjct: 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-- 756
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---- 265
LASC+ DG+++LW + ++ F S + C W
Sbjct: 757 ---LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813
Query: 266 ----------WRLDTP--LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ 313
+ + T LA + + F P + LW+++
Sbjct: 814 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL 873
Query: 314 EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT--GRCIMFLEGHLKSVFS-- 369
+V GH V+ + F DGS T D RVW+ + + L+ + VF
Sbjct: 874 KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN 933
Query: 370 ----------------------VDFSPDGY-----------HLATGSEDNAVKIWDLRKR 396
+D+ P+ ++A G ED A+KI +L
Sbjct: 934 ETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993
Query: 397 RLL------KWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGN-IISSALKEQVEPIPLL 449
R+ K + + + +L++ V++ N G+ + A +E V+ LL
Sbjct: 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLL 1053
Query: 450 LDIQKLTFKFD 460
D + L++ FD
Sbjct: 1054 QDSRLLSWSFD 1064
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLA 380
H VY F DG +A+ G D +V+ TG ++ ++ H V FS D ++A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 381 TGSEDNAVKIWDLRKRRLL 399
T S D VKIWD +L+
Sbjct: 674 TCSADKKVKIWDSATGKLV 692
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 23/242 (9%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
+S C SP ++VA G K+ +P + + GH V I+F ++G +L
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF---TADGK--TL 1018
Query: 215 ASCAQDGSVKLWSLDKDTPL---ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP 271
S ++D +++W+ + A+ E + FR+ + S F GT W + T
Sbjct: 1019 ISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTV---KVWNVITG 1075
Query: 272 LA--NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
+ H+ +S + +F T D + ++W + + +GH V C +
Sbjct: 1076 RIERDFTCHQGTVLSCAISSDATKFSSTSA-DKTAKIWSFDLLSPLHELKGHNGCVRCSA 1134
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRC------IMFLEG---HLKSVFSVDFSPDGYHLA 380
F DG ++ATG + R+W++ G+ I EG H V V FSPD L
Sbjct: 1135 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1194
Query: 381 TG 382
+
Sbjct: 1195 SA 1196
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 7/147 (4%)
Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTPL 272
+ASC D +++++ + L +++ HE V F ++ TC D ++ D+
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSDDSYIATCSADKKVKIWDSAT 688
Query: 273 ANL-----EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYC 327
L E E + L T D +LWDLNQ + GH V
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748
Query: 328 MSFQGDGSVVATGGLDAFGRVWDLRTG 354
F D ++A+ D R+WD+R+
Sbjct: 749 CRFSPDDELLASCSADGTLRLWDVRSA 775
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 250 FHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW 304
F G+ + +C D + ++ L +++ HE V F ++ TC D
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSDDSYIATCSADKKV 688
Query: 305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS--VVATGGLDAFGRVWDLRTGRCIMFLEG 362
++WD G+ V + H + V C F + ++ATG D F ++WDL C + G
Sbjct: 689 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 748
Query: 363 HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
H SV FSPD LA+ S D +++WD+R
Sbjct: 749 HTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 103/260 (39%), Gaps = 31/260 (11%)
Query: 158 CSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC 217
C+FS D ++AT S K+W +LV T+ H V F ++ LA+
Sbjct: 670 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF---TNKSNHLLLATG 726
Query: 218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTPLANLE 276
+ D +KLW L++ + GH V+ +F P L +C D + RL D AN
Sbjct: 727 SNDFFLKLWDLNQKECRNTMFGHTN-SVNHCRFSPDDELLASCSADGTLRLWDVRSAN-- 783
Query: 277 GHEPFRVSRIKFHPSGR--------FLGTCCWD-----------HSWRLWDLNQGQEV-- 315
E ++ +F S + C W + L+D++ +
Sbjct: 784 --ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 841
Query: 316 LHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD 375
+H H YC F + +W++ + + GHL V V FSPD
Sbjct: 842 IHTGHHSTIQYC-DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD 900
Query: 376 GYHLATGSEDNAVKIWDLRK 395
G T S+D +++W+ +K
Sbjct: 901 GSSFLTASDDQTIRVWETKK 920
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 288 FHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGR 347
F G+ + +C D + +++ G+++L + H V C +F D S +AT D +
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 348 VWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH--LATGSEDNAVKIWDLRKR 396
+WD TG+ + + H + V F+ H LATGS D +K+WDL ++
Sbjct: 690 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 104/264 (39%), Gaps = 39/264 (14%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLC-KLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G I YC FSP H+A + S C +LW + V RGH V + F P S
Sbjct: 845 GHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS- 902
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
S + + D ++++W K + + + V + + +
Sbjct: 903 ----SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV---------------VFQENETM 943
Query: 269 DTPLANLEGHEPF--RVSRIKFHPSGRFLGTCCW------------DHSWRLWDLNQGQE 314
+ N+ G + + +I + P + + CC D + ++ +L +
Sbjct: 944 VLAVDNIRGLQLIAGKTGQIDYLPEAQ-VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 1002
Query: 315 VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP 374
GH K V + F DG + + D+ +VW+ +TG + FL+ H ++V
Sbjct: 1003 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQ 1061
Query: 375 DGYHLATGSEDNAVKIWDLRKRRL 398
D L + S D VK+W++ R+
Sbjct: 1062 DS-RLLSWSFDGTVKVWNVITGRI 1084
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 110/297 (37%), Gaps = 54/297 (18%)
Query: 147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLP 206
+ G T +++C FSPD + +A+ S G +LW V ++ + + E P
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS-EDPPED 803
Query: 207 SEGAV--CSLAS------CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRF-- 256
E V CS ++ A V L+ + LA + + F P
Sbjct: 804 VEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV 863
Query: 257 --LGTCCWDHSWRLDTPL--ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD---- 308
L C + W +D+ L A+ GH + V + F P G T D + R+W+
Sbjct: 864 IALSQYCVE-LWNIDSRLKVADCRGHLSW-VHGVMFSPDGSSFLTASDDQTIRVWETKKV 921
Query: 309 -------LNQGQEVLHQEGH----------------GKP----------VYCMSFQGDGS 335
L Q +V+ QE GK V C
Sbjct: 922 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE 981
Query: 336 VVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
VA G D ++ +L R GH K+V + F+ DG L + SED+ +++W+
Sbjct: 982 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 13/218 (5%)
Query: 198 GAIEFHPLPSEGAVC------SLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFH 251
G I++ P C +A +DG++K+ L + ++ GH+ V I+F
Sbjct: 961 GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK-AVRHIQFT 1019
Query: 252 PSGRFLGTCCWD---HSWRLDT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLW 307
G+ L + D W T L+ H+ V + R L + +D + ++W
Sbjct: 1020 ADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE-TVKDFRLLQDSRLL-SWSFDGTVKVW 1077
Query: 308 DLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSV 367
++ G+ H V + D + ++ D ++W + L+GH V
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1137
Query: 368 FSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL 405
FS DG LATG ++ ++IW++ +LL C +
Sbjct: 1138 RCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1175
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/371 (20%), Positives = 132/371 (35%), Gaps = 67/371 (18%)
Query: 152 TRPISYCSFSPDSQHV--ATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
+ ++ C F+ S H+ AT S KLW + + E T GH +V F P
Sbjct: 706 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-- 763
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---- 265
LASC+ DG+++LW + ++ F S + C W
Sbjct: 764 ---LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 820
Query: 266 ----------WRLDTP--LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ 313
+ + T LA + + F P + LW+++
Sbjct: 821 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL 880
Query: 314 EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT--GRCIMFLEGHLKSVFS-- 369
+V GH V+ + F DGS T D RVW+ + + L+ + VF
Sbjct: 881 KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN 940
Query: 370 ----------------------VDFSPDGY-----------HLATGSEDNAVKIWDLRKR 396
+D+ P+ ++A G ED A+KI +L
Sbjct: 941 ETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 1000
Query: 397 RLL------KWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGN-IISSALKEQVEPIPLL 449
R+ K + + + +L++ V++ N G+ + A +E V+ LL
Sbjct: 1001 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLL 1060
Query: 450 LDIQKLTFKFD 460
D + L++ FD
Sbjct: 1061 QDSRLLSWSFD 1071
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLA 380
H VY F DG +A+ G D +V+ TG ++ ++ H V FS D ++A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 381 TGSEDNAVKIWDLRKRRLL 399
T S D VKIWD +L+
Sbjct: 681 TCSADKKVKIWDSATGKLV 699
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 23/242 (9%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
+S C SP ++VA G K+ +P + + GH V I+F ++G +L
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF---TADGK--TL 1025
Query: 215 ASCAQDGSVKLWSLDKDTPL---ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP 271
S ++D +++W+ + A+ E + FR+ + S F GT W + T
Sbjct: 1026 ISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTV---KVWNVITG 1082
Query: 272 LA--NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
+ H+ +S + +F T D + ++W + + +GH V C +
Sbjct: 1083 RIERDFTCHQGTVLSCAISSDATKFSSTSA-DKTAKIWSFDLLSPLHELKGHNGCVRCSA 1141
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRC------IMFLEG---HLKSVFSVDFSPDGYHLA 380
F DG ++ATG + R+W++ G+ I EG H V V FSPD L
Sbjct: 1142 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1201
Query: 381 TG 382
+
Sbjct: 1202 SA 1203
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 7/147 (4%)
Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTPL 272
+ASC D +++++ + L +++ HE V F ++ TC D ++ D+
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSDDSYIATCSADKKVKIWDSAT 695
Query: 273 ANL-----EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYC 327
L E E + L T D +LWDLNQ + GH V
Sbjct: 696 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 755
Query: 328 MSFQGDGSVVATGGLDAFGRVWDLRTG 354
F D ++A+ D R+WD+R+
Sbjct: 756 CRFSPDDELLASCSADGTLRLWDVRSA 782
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 27/221 (12%)
Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR 247
+T RGH + A+ + L S +QDG + +W D+ N P R S
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRL-----LLSASQDGKLIIW----DSYTTNKVHAIPLRSSW 99
Query: 248 I---KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEP-FRVSRIKFHPSG-----RFLG-- 296
+ + PSG ++ D+ + NL+ E RVSR +G RFL
Sbjct: 100 VMTCAYAPSGNYVACGGLDNI----CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 297 ---TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
T D + LWD+ GQ+ GH V +S D + +G DA ++WD+R
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
G C GH + ++ F P+G ATGS+D +++DLR
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T +S C F D+Q + T+S C LW + + TF GH +V ++ P
Sbjct: 140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
S A D S KLW + + GHE ++ I F P+G T D + RL
Sbjct: 199 -----FVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRL 252
Query: 269 DTPLANLE----GHEPF--RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG 322
A+ E H+ ++ + F SGR L D + +WD + GH
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
Query: 323 KPVYCMSFQGDGSVVATGGLDAFGRVWD 350
V C+ DG VATG D+F ++W+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 19/249 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECE----LVQTFRGHDCNVGAIEFHPLPSEGA 210
+ C+++P +VA +C ++ + E + + GH + F L
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQI 157
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-- 268
V S + D + LW ++ GH V + P R + D S +L
Sbjct: 158 VTS----SGDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 269 ---DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVL--HQEGHGK 323
GHE ++ I F P+G T D + RL+DL QE++ +
Sbjct: 213 VREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 324 PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS 383
+ +SF G ++ G D VWD L GH V + + DG +ATGS
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Query: 384 EDNAVKIWD 392
D+ +KIW+
Sbjct: 332 WDSFLKIWN 340
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
V + P R + D S +LWD+ +G GH + + F +G+ ATG
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 343 DAFGRVWDLRTGRCIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
DA R++DLR + +M + + + SV FS G L G +D +WD K
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 280 PFRVSRI---KFHPSGRFLGTCCWDHSWRLWDLN--QGQEVLHQE--GHGKPVYCMSFQG 332
P R S + + PSG ++ D+ +++L +G + +E GH + C F
Sbjct: 94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 333 DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
D +V + G D +WD+ TG+ GH V S+ +PD +G+ D + K+WD
Sbjct: 154 DNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 393 LRK 395
+R+
Sbjct: 213 VRE 215
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 319 EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH 378
GH +Y M + D ++ + D +WD T + + V + ++P G +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 379 LATGSEDNAVKIWDLRKR 396
+A G DN I++L+ R
Sbjct: 112 VACGGLDNICSIYNLKTR 129
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 27/221 (12%)
Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR 247
+T RGH + A+ + L S +QDG + +W D+ N P R S
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRL-----LLSASQDGKLIIW----DSYTTNKVHAIPLRSSW 99
Query: 248 I---KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEP-FRVSRIKFHPSG-----RFLG-- 296
+ + PSG ++ D+ + NL+ E RVSR +G RFL
Sbjct: 100 VMTCAYAPSGNYVACGGLDNI----CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 297 ---TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
T D + LWD+ GQ+ GH V +S D + +G DA ++WD+R
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
G C GH + ++ F P+G ATGS+D +++DLR
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G T +S C F D+Q + T+S C LW + + TF GH +V ++ P
Sbjct: 140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
S A D S KLW + + GHE ++ I F P+G T D + RL
Sbjct: 199 -----FVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRL 252
Query: 269 DTPLANLE----GHEPF--RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG 322
A+ E H+ ++ + F SGR L D + +WD + GH
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
Query: 323 KPVYCMSFQGDGSVVATGGLDAFGRVWD 350
V C+ DG VATG D+F ++W+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 19/249 (7%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECE----LVQTFRGHDCNVGAIEFHPLPSEGA 210
+ C+++P +VA +C ++ + E + + GH + F L
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQI 157
Query: 211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-- 268
V S + D + LW ++ GH V + P R + D S +L
Sbjct: 158 VTS----SGDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 269 ---DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVL--HQEGHGK 323
GHE ++ I F P+G T D + RL+DL QE++ +
Sbjct: 213 VREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 324 PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS 383
+ +SF G ++ G D VWD L GH V + + DG +ATGS
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Query: 384 EDNAVKIWD 392
D+ +KIW+
Sbjct: 332 WDSFLKIWN 340
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
V + P R + D S +LWD+ +G GH + + F +G+ ATG
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 343 DAFGRVWDLRTGRCIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
DA R++DLR + +M + + + SV FS G L G +D +WD K
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 280 PFRVSRI---KFHPSGRFLGTCCWDHSWRLWDLN--QGQEVLHQE--GHGKPVYCMSFQG 332
P R S + + PSG ++ D+ +++L +G + +E GH + C F
Sbjct: 94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 333 DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
D +V + G D +WD+ TG+ GH V S+ +PD +G+ D + K+WD
Sbjct: 154 DNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 393 LRK 395
+R+
Sbjct: 213 VRE 215
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 319 EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH 378
GH +Y M + D ++ + D +WD T + + V + ++P G +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 379 LATGSEDNAVKIWDLRKR 396
+A G DN I++L+ R
Sbjct: 112 VACGGLDNICSIYNLKTR 129
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 51/254 (20%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
G + +S S D Q + SW G +LW + + F GH +V ++ F +
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ- 142
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
+ S ++D ++KLW+ LG C +
Sbjct: 143 ----IVSGSRDKTIKLWNT----------------------------LGVCKYT------ 164
Query: 270 TPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYC 327
E H + VS ++F P S + +C WD ++W+L + + GH +
Sbjct: 165 ---VQDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 220
Query: 328 MSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL--ATGSED 385
++ DGS+ A+GG D +WDL G+ + L+G + ++ FSP+ Y L ATG
Sbjct: 221 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGP-- 277
Query: 386 NAVKIWDLRKRRLL 399
++KIWDL + ++
Sbjct: 278 -SIKIWDLEGKIIV 290
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 21/231 (9%)
Query: 183 ECELVQTFRGHDCNVGAIEFHP-LPSEGAVCSLASCAQDGSVKLWSLDKD-----TPLAN 236
+ L T +GH+ V I P P + S ++D ++ +W L +D P
Sbjct: 27 QMTLRGTLKGHNGWVTQIATTPQFPDM-----ILSASRDKTIIMWKLTRDETNYGIPQRA 81
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPS 291
L GH F VS + G+F + WD + RL T GH V + F
Sbjct: 82 LRGHSHF-VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK-DVLSVAFSSD 139
Query: 292 GRFLGTCCWDHSWRLWD-LNQGQEVLHQEGHGKPVYCMSFQGDGS--VVATGGLDAFGRV 348
R + + D + +LW+ L + + E H + V C+ F + S ++ + G D +V
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 349 WDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
W+L + GH + +V SPDG A+G +D +WDL + + L
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 90/221 (40%), Gaps = 22/221 (9%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLW-TVPECELVQTFRGHDCNVGAIEFHPLPS 207
VG T+ + +FS D++ + + S KLW T+ C+ H V + F P S
Sbjct: 125 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184
Query: 208 EGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-- 265
+ SC D VK+W+L N GH + ++ + P G + D
Sbjct: 185 NPII---VSCGWDKLVKVWNLANCKLKTNHIGHTGY-LNTVTVSPDGSLCASGGKDGQAM 240
Query: 266 -WRLDTP--LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ-------GQEV 315
W L+ L L+G + ++ + F P+ R+ S ++WDL QEV
Sbjct: 241 LWDLNEGKHLYTLDGGDI--INALCFSPN-RYWLCAATGPSIKIWDLEGKIIVDELKQEV 297
Query: 316 LHQEGHGKPVYC--MSFQGDGSVVATGGLDAFGRVWDLRTG 354
+ +P C +++ DG + G D RVW + G
Sbjct: 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 138 HLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNV 197
+L + + + +G T ++ + SPD A+ G LW + E + + T G D +
Sbjct: 201 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-I 259
Query: 198 GAIEFHPLPSEGAVCSLASCAQDG-SVKLWSLD--------KDTPLANLEGHEPFRVSRI 248
A+ F P CA G S+K+W L+ K ++ EP + + +
Sbjct: 260 NALCFSP-------NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 312
Query: 249 KFHPSGRFL 257
+ G+ L
Sbjct: 313 AWSADGQTL 321
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 51/254 (20%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
G + +S S D Q + SW G +LW + + F GH +V ++ F +
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ- 119
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
+ S ++D ++KLW+ LG C +
Sbjct: 120 ----IVSGSRDKTIKLWNT----------------------------LGVCKYT------ 141
Query: 270 TPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYC 327
E H + VS ++F P S + +C WD ++W+L + + GH +
Sbjct: 142 ---VQDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 197
Query: 328 MSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL--ATGSED 385
++ DGS+ A+GG D +WDL G+ + L+G + ++ FSP+ Y L ATG
Sbjct: 198 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGP-- 254
Query: 386 NAVKIWDLRKRRLL 399
++KIWDL + ++
Sbjct: 255 -SIKIWDLEGKIIV 267
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 21/231 (9%)
Query: 183 ECELVQTFRGHDCNVGAIEFHP-LPSEGAVCSLASCAQDGSVKLWSLDKD-----TPLAN 236
+ L T +GH+ V I P P + S ++D ++ +W L +D P
Sbjct: 4 QMTLRGTLKGHNGWVTQIATTPQFPDM-----ILSASRDKTIIMWKLTRDETNYGIPQRA 58
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPS 291
L GH F VS + G+F + WD + RL T GH +S + F
Sbjct: 59 LRGHSHF-VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSD 116
Query: 292 GRFLGTCCWDHSWRLWD-LNQGQEVLHQEGHGKPVYCMSFQGDGS--VVATGGLDAFGRV 348
R + + D + +LW+ L + + E H + V C+ F + S ++ + G D +V
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 349 WDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
W+L + GH + +V SPDG A+G +D +WDL + + L
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 90/221 (40%), Gaps = 22/221 (9%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLW-TVPECELVQTFRGHDCNVGAIEFHPLPS 207
VG T+ + +FS D++ + + S KLW T+ C+ H V + F P S
Sbjct: 102 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 161
Query: 208 EGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-- 265
+ SC D VK+W+L N GH + ++ + P G + D
Sbjct: 162 NPII---VSCGWDKLVKVWNLANCKLKTNHIGHTGY-LNTVTVSPDGSLCASGGKDGQAM 217
Query: 266 -WRLDTP--LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ-------GQEV 315
W L+ L L+G + ++ + F P+ R+ S ++WDL QEV
Sbjct: 218 LWDLNEGKHLYTLDGGDI--INALCFSPN-RYWLCAATGPSIKIWDLEGKIIVDELKQEV 274
Query: 316 LHQEGHGKPVYC--MSFQGDGSVVATGGLDAFGRVWDLRTG 354
+ +P C +++ DG + G D RVW + G
Sbjct: 275 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 138 HLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNV 197
+L + + + +G T ++ + SPD A+ G LW + E + + T G D +
Sbjct: 178 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-I 236
Query: 198 GAIEFHPLPSEGAVCSLASCAQDG-SVKLWSLD--------KDTPLANLEGHEPFRVSRI 248
A+ F P CA G S+K+W L+ K ++ EP + + +
Sbjct: 237 NALCFSP-------NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289
Query: 249 KFHPSGRFL 257
+ G+ L
Sbjct: 290 AWSADGQTL 298
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 32/270 (11%)
Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ 219
F P V T +SG +LW V++ + + V A +F + V S
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-----D 75
Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC---------WDHSWRLDT 270
D +++++ + + + E H P + I HP+ ++ + W+++W L+
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE- 133
Query: 271 PLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLWDLNQGQ-EVLHQEGHGKPVYCM 328
EGHE F V + F+P + C D + ++W L Q G + V +
Sbjct: 134 --QTFEGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 329 SFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN 386
+ D + T D ++WD +T C+ LEGH+ +V F P + +GSED
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 387 AVKIWDLRKRRLLK---------WCTQLLP 407
+KIW+ ++ K WC P
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 183 ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHE- 241
+ ++ +TF V I+FHP +E V + G V+LW+ + + +++ E
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHP--TEPWVLT---TLYSGRVELWNYETQVEVRSIQVTET 56
Query: 242 PFRVSRIKFHPSGRFLGTCCWD-----------HSWRLDTPLANLEGHEPFRVSRIKFHP 290
P R +G+F+ W ++ + + E H P + I HP
Sbjct: 57 PVR--------AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHP 107
Query: 291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQ--EGHGKPVYCMSFQ-GDGSVVATGGLDAFGR 347
+ ++ + D + +LW+ + L Q EGH V C++F D S A+G LD +
Sbjct: 108 TKPYVLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 348 VWDL-RTGRCIMFLEGHLKSVFSVDFSP--DGYHLATGSEDNAVKIWDLRKR 396
VW L ++ G + V VD+ P D ++ T S+D +KIWD + +
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 106/263 (40%), Gaps = 18/263 (6%)
Query: 134 ELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGH 193
EL + T + + QV +T P+ F + S +++ E V F H
Sbjct: 38 ELWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 194 DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLA-NLEGHEPFRVSRIKFHP 252
+ +I HP + S + D +VKLW+ + + L EGHE F V + F+P
Sbjct: 97 PDYIRSIAVHPTKP-----YVLSGSDDLTVKLWNWENNWALEQTFEGHEHF-VMCVAFNP 150
Query: 253 SG-RFLGTCCWDHS---WRL--DTPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHSW 304
+ C D + W L TP L + V+ + ++P ++ T D +
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL 364
++WD V EGH V F ++ +G D ++W+ T + L L
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
Query: 365 KSVFSVDFSPDGY--HLATGSED 385
+ + + P G ++A+G ++
Sbjct: 271 ERSWCIATHPTGRKNYIASGFDN 293
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 32/270 (11%)
Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ 219
F P V T +SG +LW V++ + + V A +F + V S
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-----D 75
Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC---------WDHSWRLDT 270
D +++++ + + + E H P + I HP+ ++ + W+++W L+
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE- 133
Query: 271 PLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLWDLNQGQ-EVLHQEGHGKPVYCM 328
EGHE F V + F+P + C D + ++W L Q G + V +
Sbjct: 134 --QTFEGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 329 SFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN 386
+ D + T D ++WD +T C+ LEGH+ +V F P + +GSED
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 387 AVKIWDLRKRRLLK---------WCTQLLP 407
+KIW+ ++ K WC P
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 183 ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHE- 241
+ ++ +TF V I+FHP +E V + G V+LW+ + + +++ E
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHP--TEPWVLT---TLYSGRVELWNYETQVEVRSIQVTET 56
Query: 242 PFRVSRIKFHPSGRFLGTCCWD-----------HSWRLDTPLANLEGHEPFRVSRIKFHP 290
P R +G+F+ W ++ + + E H P + I HP
Sbjct: 57 PVR--------AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHP 107
Query: 291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQ--EGHGKPVYCMSFQ-GDGSVVATGGLDAFGR 347
+ ++ + D + +LW+ + L Q EGH V C++F D S A+G LD +
Sbjct: 108 TKPYVLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 348 VWDL-RTGRCIMFLEGHLKSVFSVDFSP--DGYHLATGSEDNAVKIWDLRKR 396
VW L ++ G + V VD+ P D ++ T S+D +KIWD + +
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 106/263 (40%), Gaps = 18/263 (6%)
Query: 134 ELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGH 193
EL + T + + QV +T P+ F + S +++ E V F H
Sbjct: 38 ELWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 194 DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLA-NLEGHEPFRVSRIKFHP 252
+ +I HP + S + D +VKLW+ + + L EGHE F V + F+P
Sbjct: 97 PDYIRSIAVHPTKP-----YVLSGSDDLTVKLWNWENNWALEQTFEGHEHF-VMCVAFNP 150
Query: 253 SG-RFLGTCCWDHS---WRL--DTPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHSW 304
+ C D + W L TP L + V+ + ++P ++ T D +
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL 364
++WD V EGH V F ++ +G D ++W+ T + L L
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
Query: 365 KSVFSVDFSPDGY--HLATGSED 385
+ + + P G ++A+G ++
Sbjct: 271 ERSWCIATHPTGRKNYIASGFDN 293
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 32/270 (11%)
Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ 219
F P V T +SG +LW V++ + + V A +F + V S
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-----D 75
Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC---------WDHSWRLDT 270
D +++++ + + + E H P + I HP+ ++ + W+++W L+
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE- 133
Query: 271 PLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLWDLNQGQ-EVLHQEGHGKPVYCM 328
EGHE F V + F+P + C D + ++W L Q G + V +
Sbjct: 134 --QTFEGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 329 SFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN 386
+ D + T D ++WD +T C+ LEGH+ +V F P + +GSED
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 387 AVKIWDLRKRRLLK---------WCTQLLP 407
+KIW+ ++ K WC P
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 183 ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHE- 241
+ ++ +TF V I+FHP +E V + G V+LW+ + + +++ E
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHP--TEPWVLT---TLYSGRVELWNYETQVEVRSIQVTET 56
Query: 242 PFRVSRIKFHPSGRFLGTCCWD-----------HSWRLDTPLANLEGHEPFRVSRIKFHP 290
P R +G+F+ W ++ + + E H P + I HP
Sbjct: 57 PVR--------AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHP 107
Query: 291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQ--EGHGKPVYCMSFQ-GDGSVVATGGLDAFGR 347
+ ++ + D + +LW+ + L Q EGH V C++F D S A+G LD +
Sbjct: 108 TKPYVLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 348 VWDL-RTGRCIMFLEGHLKSVFSVDFSP--DGYHLATGSEDNAVKIWDLRKR 396
VW L ++ G + V VD+ P D ++ T S+D +KIWD + +
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 108/271 (39%), Gaps = 19/271 (7%)
Query: 134 ELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGH 193
EL + T + + QV +T P+ F + S +++ E V F H
Sbjct: 38 ELWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 194 DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLA-NLEGHEPFRVSRIKFHP 252
+ +I HP + S + D +VKLW+ + + L EGHE F V + F+P
Sbjct: 97 PDYIRSIAVHPTKP-----YVLSGSDDLTVKLWNWENNWALEQTFEGHEHF-VMCVAFNP 150
Query: 253 SG-RFLGTCCWDHS---WRL--DTPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHSW 304
+ C D + W L TP L + V+ + ++P ++ T D +
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL 364
++WD V EGH V F ++ +G D ++W+ T + L L
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
Query: 365 KSVFSVDFSPDGY--HLATGSEDNAVKIWDL 393
+ + + P G ++A+G DN + L
Sbjct: 271 ERSWCIATHPTGRKNYIASGF-DNGFTVLSL 300
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 111/270 (41%), Gaps = 32/270 (11%)
Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ 219
F P V T +SG ++W V++ + + V A +F + V S
Sbjct: 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-----D 75
Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC---------WDHSWRLDT 270
D +++++ + + + E H P + I HP+ ++ + W+++W L+
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE- 133
Query: 271 PLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLWDLNQGQ-EVLHQEGHGKPVYCM 328
EGHE F V + F+P + C D + ++W L Q G + V +
Sbjct: 134 --QTFEGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 329 SFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN 386
+ D + T D ++WD +T C+ LEGH+ +V F P + +GSED
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 387 AVKIWDLRKRRLLK---------WCTQLLP 407
+KIW+ ++ K WC P
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 102/224 (45%), Gaps = 17/224 (7%)
Query: 183 ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHE- 241
+ ++ +TF V I+FHP +E V + G V++W+ + + +++ E
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHP--TEPWVLT---TLYSGRVEIWNYETQVEVRSIQVTET 56
Query: 242 PFRVSRIKFHPSGRFLGTCCWD---HSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTC 298
P R + + +G+ + ++ + + E H P + I HP+ ++ +
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSG 115
Query: 299 CWDHSWRLWDLNQGQEVLHQ--EGHGKPVYCMSFQ-GDGSVVATGGLDAFGRVWDL-RTG 354
D + +LW+ + L Q EGH V C++F D S A+G LD +VW L ++
Sbjct: 116 SDDLTVKLWNW-ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 355 RCIMFLEGHLKSVFSVDFSP--DGYHLATGSEDNAVKIWDLRKR 396
G + V VD+ P D ++ T S+D +KIWD + +
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 108/271 (39%), Gaps = 19/271 (7%)
Query: 134 ELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGH 193
E+ + T + + QV +T P+ F + S +++ E V F H
Sbjct: 38 EIWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 194 DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLA-NLEGHEPFRVSRIKFHP 252
+ +I HP + S + D +VKLW+ + + L EGHE F V + F+P
Sbjct: 97 PDYIRSIAVHPTKP-----YVLSGSDDLTVKLWNWENNWALEQTFEGHEHF-VMCVAFNP 150
Query: 253 SG-RFLGTCCWDHS---WRL--DTPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHSW 304
+ C D + W L TP L + V+ + ++P ++ T D +
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL 364
++WD V EGH V F ++ +G D ++W+ T + L L
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
Query: 365 KSVFSVDFSPDGY--HLATGSEDNAVKIWDL 393
+ + + P G ++A+G DN + L
Sbjct: 271 ERSWCIATHPTGRKNYIASGF-DNGFTVLSL 300
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 113/262 (43%), Gaps = 38/262 (14%)
Query: 140 TSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGA 199
TS +YC Q D Q + + K+W E + GH +V
Sbjct: 132 TSKGVYCLQY-------------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 178
Query: 200 IEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
+++ E + + +S D +V++W ++ L L H V ++F+ + T
Sbjct: 179 LQY----DERVIITGSS---DSTVRVWDVNTGEMLNTLI-HHCEAVLHLRFNNG--MMVT 228
Query: 260 CCWDHS---WRLDTPL-----ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ 311
C D S W + +P L GH V+ + F +++ + D + ++W+ +
Sbjct: 229 CSKDRSIAVWDMASPTDITLRRVLVGHRAA-VNVVDF--DDKYIVSASGDRTIKVWNTST 285
Query: 312 GQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVD 371
+ V GH + + C+ ++ +V +G D R+WD+ G C+ LEGH + V +
Sbjct: 286 CEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 343
Query: 372 FSPDGYHLATGSEDNAVKIWDL 393
F D + +G+ D +K+WDL
Sbjct: 344 F--DNKRIVSGAYDGKIKVWDL 363
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 323 KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG 382
K VYC+ + D + +G D ++WD T C L GH SV + + D + TG
Sbjct: 134 KGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITG 189
Query: 383 SEDNAVKIWDLRKRRLL 399
S D+ V++WD+ +L
Sbjct: 190 SSDSTVRVWDVNTGEML 206
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 27/233 (11%)
Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR 247
+T +GH V ++++ P + + S +QDG + +W+ ++ H P+ V
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNW-----IVSASQDGRLIVWNALTSQKTHAIKLHCPW-VME 113
Query: 248 IKFHPSGRFLGTCCWDHSWRL-----------DTPLAN-LEGHEPFRVSRIKFHPSGRF- 294
F P+G+ + D + + + P++ L GH+ + S ++ P
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY-ASSCQYVPDQETR 172
Query: 295 LGTCCWDHSWRLWDLNQGQEVL-----HQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRV 348
L T D + LWD+ GQ + GH V +S + ++ +G D R+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 349 WDLR-TGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
WDLR T R + GH + SV F PDG TGS+D +++D+R L+
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 96/261 (36%), Gaps = 63/261 (24%)
Query: 156 SYCSFSPDSQ-HVATASWSGLCKLWTVPECELVQTF-----RGHDCNVGAIEFHPLPSEG 209
S C + PD + + T S C LW V + + F GH +V ++ + L +
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
+ SC D +V+LW L RI
Sbjct: 221 FIS--GSC--DTTVRLWDL------------------RIT-------------------S 239
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKP----- 324
+ GHE ++ +KF P G+ GT D + RL+D+ G ++ Q + +P
Sbjct: 240 RAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL--QVYNREPDRNDN 296
Query: 325 ----VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL----EGHLKSVFSVDFSPDG 376
V ++F G ++ G + VWD ++ L H + + S DG
Sbjct: 297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG 356
Query: 377 YHLATGSEDNAVKIWDLRKRR 397
L TGS D +KIW R
Sbjct: 357 SALCTGSWDKNLKIWAFSGHR 377
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 27/195 (13%)
Query: 142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLC----KLWTVP-ECELVQTFRGHDCN 196
+SI+ S+ S S +S + A SG C +LW + V+T+ GH+ +
Sbjct: 193 ISIFGSEFPSGHTADVLSLSINSLN-ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD 251
Query: 197 VGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR-------VSRIK 249
+ +++F P + + DG+ +L+ + L + EP R V+ +
Sbjct: 252 INSVKFFPDGQR-----FGTGSDDGTCRLFDMRTGHQL-QVYNREPDRNDNELPIVTSVA 305
Query: 250 FHPSGRFL------GTC-CWDHSW-RLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD 301
F SGR L G C WD + L L+ R+S + G L T WD
Sbjct: 306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD 365
Query: 302 HSWRLWDLNQGQEVL 316
+ ++W + ++++
Sbjct: 366 KNLKIWAFSGHRKIV 380
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 356 CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
C L+GH V+S+D++P+ + + S+D + +W+
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWN 94
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 17/188 (9%)
Query: 221 GSVKLWSLD---KDTPLANLEG-HEPFRVSRIKFHPSGRFL---GTCCWDHSWRLDTPL- 272
G VK+W + +P++ L+ + + K P G L G W L P
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
Query: 273 ---ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
A L P + P + +CC D + +WDL+ V +GH C+
Sbjct: 132 RIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH--LKSVFSVDFSPDGYHLATGSEDNA 387
DG+ + TGGLD R WDLR GR L+ H +FS+ + P G LA G E +
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGR---QLQQHDFTSQIFSLGYCPTGEWLAVGMESSN 247
Query: 388 VKIWDLRK 395
V++ + K
Sbjct: 248 VEVLHVNK 255
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 306 LWDLNQGQEVLHQE--GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH 363
+WDL + E Y ++ D V + D VWDL + +GH
Sbjct: 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182
Query: 364 LKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
+D S DG L TG DN V+ WDLR+ R L+
Sbjct: 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 10/183 (5%)
Query: 216 SCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLDTPL 272
SC DG++ +W L T + +GH S I G L T D+ SW L
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLREG- 215
Query: 273 ANLEGHE-PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEV-LHQEGHGKPVYCMSF 330
L+ H+ ++ + + P+G +L + + +N+ + LH H V + F
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL--HESCVLSLKF 273
Query: 331 QGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKI 390
G + G D W G I F SV S D S D ++ TGS D +
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332
Query: 391 WDL 393
+++
Sbjct: 333 YEV 335
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 116/284 (40%), Gaps = 48/284 (16%)
Query: 135 LQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHD 194
L+ H+TS+ I C Q D +V T + + +++ + + GHD
Sbjct: 117 LRGHMTSV-ITCLQFED-------------NYVITGADDKMIRVYDSINKKFLLQLSGHD 162
Query: 195 CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP-FRVSRIKFHPS 253
V A+++ + G + L S + D +V++W + K EGH R I + +
Sbjct: 163 GGVWALKY----AHGGI--LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 254 GRFLGTCCWD---HSWRL-------------DTPLANLEGHE-PFRVSRIKFHPS----- 291
+++ T D H W+L D PL E P+ V ++ H +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 292 ---GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRV 348
G + + +D++ +WD+ Q + + GH +Y + + + +D R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 349 WDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
WDL G + L+GH V + S L + + D +++ WD
Sbjct: 337 WDLENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWD 378
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 275 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG 334
L GH ++ ++F + ++ T D R++D + +L GH V+ + + G
Sbjct: 117 LRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHG 173
Query: 335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFS--PDGYHLATGSEDNAVKIWD 392
++ +G D RVWD++ G C EGH +V +D + ++ TGS DN + +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 393 LRK 395
L K
Sbjct: 234 LPK 236
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 275 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG 334
L GH ++ ++F + ++ T D R++D + +L GH V+ + + G
Sbjct: 117 LRGHXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHG 173
Query: 335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF--SPDGYHLATGSEDNAVKIWD 392
++ +G D RVWD++ G C EGH +V +D + ++ TGS DN + +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 393 LRK 395
L K
Sbjct: 234 LPK 236
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 112/284 (39%), Gaps = 48/284 (16%)
Query: 135 LQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHD 194
L+ H TS+ I C Q D +V T + +++ + + GHD
Sbjct: 117 LRGHXTSV-ITCLQFED-------------NYVITGADDKXIRVYDSINKKFLLQLSGHD 162
Query: 195 CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP-FRVSRIKFHPS 253
V A+++ + G + L S + D +V++W + K EGH R I + +
Sbjct: 163 GGVWALKY----AHGGI--LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 254 GRFLGTCCWD---HSWRL-------------DTPLANLEGHE-PFRVSRIKFHPS----- 291
+++ T D H W+L D PL E P+ V ++ H +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 292 ---GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRV 348
G + + +D++ +WD+ Q + + GH +Y + + + D R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 349 WDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
WDL G L+GH V + S L + + D +++ WD
Sbjct: 337 WDLENGELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWD 378
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 106/262 (40%), Gaps = 31/262 (11%)
Query: 160 FSPDSQHVATASWSGLCKLWTV---PECELVQTFRGHDCNVGAIEFHPLPSE-------- 208
+S D Q + T ++G L +V E EL+ F G D + + E
Sbjct: 44 WSKDDQWLGTVVYTGQGFLNSVCYDSEKELL-LFGGKDTXINGVPLFATSGEDPLYTLIG 102
Query: 209 --GAVCSLASCAQDGSVKLWSLDKDTPL-------ANLEGHEP-FRVSRIKFHPSGRFLG 258
G VCSL+ QDG V S DK + NL+ H +++ +FL
Sbjct: 103 HQGNVCSLS--FQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFL- 159
Query: 259 TCCWDHS---WRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEV 315
T D + W+ D + G V + G F+ +C D +L D + G +
Sbjct: 160 TASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVL 218
Query: 316 LHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD 375
EGH VYC+ +G +V+ G D R+W G + S++SVD +
Sbjct: 219 RTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIWSKENGSLKQVITLPAISIWSVDCXSN 277
Query: 376 GYHLATGSEDNAVKIWDLRKRR 397
G + GS DN V+I+ K R
Sbjct: 278 G-DIIVGSSDNLVRIFSQEKSR 298
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 16/160 (10%)
Query: 158 CSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC 217
CS S V + SW K+W E LV + H+ +V + +
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSEN----KFLTA 161
Query: 218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPL 272
+ D ++KLW DK + G V + G F+ +C D +L L
Sbjct: 162 SADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVL 218
Query: 273 ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG 312
EGHE F V IK P+G + +C D + R+W G
Sbjct: 219 RTYEGHESF-VYCIKLLPNGDIV-SCGEDRTVRIWSKENG 256
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 214 LASCAQDGSVKLWSLD-------------------------------KDT---------- 232
+AS ++DG+V+LWS D KDT
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 233 ----PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---WRLDTPLANLEGHEP-FRVS 284
PL L GH+ V + F G+ WD + W+ + + NL+ H +
Sbjct: 92 SGEDPLYTLIGHQG-NVCSLSFQDGVVISGS--WDKTAKVWKEGSLVYNLQAHNASVWDA 148
Query: 285 RIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEG--HGKPVYCMSFQGDGSVVATGGL 342
++ +FL T D + +LW Q +V+ H V ++ DG ++
Sbjct: 149 KVVSFSENKFL-TASADKTIKLW---QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN- 203
Query: 343 DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
D ++ D TG + EGH V+ + P+G ++ G ED V+IW
Sbjct: 204 DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIW 251
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 281 FRVSRIKFHP--SGRFLGTCCWDHSWRLWDLN--QGQEVLHQEGHGKPVYCMSFQGDGSV 336
+ V ++++P +G F + +D + ++WD N Q +V + E + +
Sbjct: 100 YSVETVQWYPHDTGMFTSSS-FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL 158
Query: 337 VATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD-GYHLATGSEDNAVKIWDLRK 395
VA G ++ DL++G C L+GH + + +V +SP Y LAT S D+ VK+WD+R+
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGD-GSVVATGGLDAFGRVWDLRTGR-CIMFLE- 361
+L DL G +GH + + +S+ ++AT D+ ++WD+R C++ L+
Sbjct: 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 228
Query: 362 --------------GHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
H V + F+ DG HL T DN +++W+
Sbjct: 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 282 RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG 341
+V+ + F G L T D+ RLW+ + G+ L G V S +G V+ G
Sbjct: 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG---KVCNNSKKGLKFTVSCGC 303
Query: 342 LDAFG--------RVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
F V+ + +G I L+GH K+V F + L +GS D + W
Sbjct: 304 SSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 14/180 (7%)
Query: 292 GRFLGTCCWDHSWRLWDL-NQGQEVLH-QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVW 349
G FL W + R W++ + GQ + Q+ H PV + + DGS V T D ++W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 350 DLRTGRCIMFLEGHLKSVFSVDF--SPDGYHLATGSEDNAVKIWDLRKRRLLK------- 400
DL + + I + H V ++ + +P+ + TGS D +K WD R +
Sbjct: 114 DLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER 172
Query: 401 -WCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKF 459
+C ++ V + L + LE+ P I S LK Q + + D Q F
Sbjct: 173 CYCADVIYPMAVVATAERGLIVYQLEN-QPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEF 202
+I +Q T P+ +S D V TAS K+W + + +Q + HD V I +
Sbjct: 77 TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHW 135
Query: 203 HPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLE 238
P+ V + + D ++K W P+ L+
Sbjct: 136 IKAPNYSCV---MTGSWDKTLKFWDTRSSNPMMVLQ 168
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 29/205 (14%)
Query: 214 LASCAQDGSVKLWSLDKD-------TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW 266
L S ++D +V +W L ++ P L GH F VS + F + WD +
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF-VSDLALSQENCFAISSSWDKTL 100
Query: 267 RL-----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ---EVLHQ 318
RL T GH+ V + F P R + + + +LW++ G+ +
Sbjct: 101 RLWDLRTGTTYKRFVGHQS-EVYSVAFSPDNRQILSAGAEREIKLWNI-LGECKFSSAEK 158
Query: 319 EGHGKPVYCMSF----------QGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVF 368
E H V C+ + Q A+ G D +VW+ F + H +V
Sbjct: 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF-KAHESNVN 217
Query: 369 SVDFSPDGYHLATGSEDNAVKIWDL 393
+ SP+G ++ATG +D + IWD+
Sbjct: 218 HLSISPNGKYIATGGKDKKLLIWDI 242
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 34/255 (13%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G +S + S ++ ++SW +LW + + F GH V ++ F P +
Sbjct: 73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ 132
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
+ S + +KLW N+ G F + + H W R
Sbjct: 133 -----ILSAGAEREIKLW---------NILGECKFSSAEKENHSD--------WVSCVR- 169
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
+ P S K P + + WD ++W+ N Q + H V +
Sbjct: 170 ---------YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHL 219
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAV 388
S +G +ATGG D +WD+ ++ + F+P +A G+ D V
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGV 278
Query: 389 KIWDLRKRRLLKWCT 403
KI++L + CT
Sbjct: 279 KIFNLMTQSKAPVCT 293
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 305 RLWDL----NQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRTGRC-IM 358
++WD N+ ++L G P++C+ + VVATGG D +WD+R G +
Sbjct: 215 KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVS 274
Query: 359 FLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWD 392
L+ H ++ V F P + HL T SED ++ WD
Sbjct: 275 LLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 147 SQVGDTRPISYCSFSPDSQHV-ATASWSGLCKLWTVPECEL-VQTFRGHDCNVGAIEFHP 204
S GD P+ P+ QHV AT G+ +W V + + V + H+ + + FHP
Sbjct: 231 SLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHP 290
Query: 205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFH 251
E L +C++DGS+ W D P + H+ R S H
Sbjct: 291 SNPE----HLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSH 333
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 347 RVWDLRT----GRCIMFLEGHLKSVFSVDFSPDGYHL-ATGSEDNAVKIWDLRKRRL 398
++WD R I+ L G + VD P+ H+ ATG +D + IWD+R+ +
Sbjct: 215 KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTM 271
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 214 LASCAQDGSVKLWSLDKDT-PLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHS-WRLD 269
+A+ QDG + +W + + T P++ L+ HE + + FHPS L TC D S W D
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEA-EMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
+S + + G +L +LWD+ Q + + + H V +S+ + ++++G
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR 207
Query: 343 DAFGRVWDLRTGRC-IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
D+R + L GH + V + ++PDG HLA+G DN V +W
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 22/194 (11%)
Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP----SGRFLGTCCWDHSWRL- 268
LA V+LW + + L N+ H RV + ++ SG G H R+
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSA-RVGSLSWNSYILSSGSRSGHIH-HHDVRVA 219
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG-------QEVLHQEGH 321
+ +A L GH V +++ P GR L + D+ +W G Q +G
Sbjct: 220 EHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 278
Query: 322 GKPVYCMSFQGDGSVVATGG--LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL 379
K V +Q + V+ATGG D R+W++ +G C+ ++ H V S+ +SP L
Sbjct: 279 VKAVAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKEL 335
Query: 380 ATGS--EDNAVKIW 391
+G N + IW
Sbjct: 336 ISGHGFAQNQLVIW 349
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 103/257 (40%), Gaps = 35/257 (13%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++ + ++A + S +LW V + + ++ H VG++ ++ L
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-------IL 202
Query: 215 ASCAQDGSVKLWSLD-KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA 273
+S ++ G + + + +A L GH V +++ P GR L + D+ + P A
Sbjct: 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNV-WPSA 260
Query: 274 NLEGHEPFRVSRIKFHPSGRFLGTCCW------------DHSWRLWDLNQGQEVLHQEGH 321
EG + + + + + C W D R+W++ G + + H
Sbjct: 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 322 GK-------PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP 374
+ P Y G G A L +W T + L+GH V S+ SP
Sbjct: 321 SQVCSILWSPHYKELISGHG--FAQNQL----VIWKYPTMAKVAELKGHTSRVLSLTMSP 374
Query: 375 DGYHLATGSEDNAVKIW 391
DG +A+ + D +++W
Sbjct: 375 DGATVASAAADETLRLW 391
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 28/186 (15%)
Query: 136 QKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE----LVQTFR 191
+ H+ +LS + +V R ++PD +H+A+ L +W E +QTF
Sbjct: 220 EHHVATLSGHSQEVCGLR------WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 273
Query: 192 GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFH 251
H V A+ + P S V + D +++W++ L+ ++ H +V I +
Sbjct: 274 QHQGAVKAVAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWS 329
Query: 252 PSGRFLGTCCWDHS--------WRLDT--PLANLEGHEPFRVSRIKFHPSGRFLGTCCWD 301
P + L + H W+ T +A L+GH RV + P G + + D
Sbjct: 330 PHYKELIS---GHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAAD 385
Query: 302 HSWRLW 307
+ RLW
Sbjct: 386 ETLRLW 391
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 320 GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC----IMFLEGHLKSVFSVDFSP- 374
GH + V + + DG +A+GG D VW G + H +V +V + P
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 375 DGYHLAT--GSEDNAVKIWDL 393
LAT G+ D ++IW++
Sbjct: 288 QSNVLATGGGTSDRHIRIWNV 308
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
+S + + G +L +LWD+ Q + + + H V +S+ + ++++G
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR 218
Query: 343 DAFGRVWDLRTGRC-IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
D+R + L GH + V + ++PDG HLA+G DN V +W
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 22/194 (11%)
Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP----SGRFLGTCCWDHSWRL- 268
LA V+LW + + L N+ H RV + ++ SG G H R+
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSA-RVGSLSWNSYILSSGSRSGHIH-HHDVRVA 230
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG-------QEVLHQEGH 321
+ +A L GH V +++ P GR L + D+ +W G Q +G
Sbjct: 231 EHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 289
Query: 322 GKPVYCMSFQGDGSVVATGG--LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL 379
K V +Q + V+ATGG D R+W++ +G C+ ++ H V S+ +SP L
Sbjct: 290 VKAVAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKEL 346
Query: 380 ATGS--EDNAVKIW 391
+G N + IW
Sbjct: 347 ISGHGFAQNQLVIW 360
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 103/257 (40%), Gaps = 35/257 (13%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++ + ++A + S +LW V + + ++ H VG++ ++ L
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-------IL 213
Query: 215 ASCAQDGSVKLWSLD-KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA 273
+S ++ G + + + +A L GH V +++ P GR L + D+ + P A
Sbjct: 214 SSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNV-WPSA 271
Query: 274 NLEGHEPFRVSRIKFHPSGRFLGTCCW------------DHSWRLWDLNQGQEVLHQEGH 321
EG + + + + + C W D R+W++ G + + H
Sbjct: 272 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Query: 322 GK-------PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP 374
+ P Y G G A L +W T + L+GH V S+ SP
Sbjct: 332 SQVCSILWSPHYKELISGHG--FAQNQL----VIWKYPTMAKVAELKGHTSRVLSLTMSP 385
Query: 375 DGYHLATGSEDNAVKIW 391
DG +A+ + D +++W
Sbjct: 386 DGATVASAAADETLRLW 402
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 28/186 (15%)
Query: 136 QKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE----LVQTFR 191
+ H+ +LS + +V R ++PD +H+A+ L +W E +QTF
Sbjct: 231 EHHVATLSGHSQEVCGLR------WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 284
Query: 192 GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFH 251
H V A+ + P S V + D +++W++ L+ ++ H +V I +
Sbjct: 285 QHQGAVKAVAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWS 340
Query: 252 PSGRFLGTCCWDHS--------WRLDT--PLANLEGHEPFRVSRIKFHPSGRFLGTCCWD 301
P + L + H W+ T +A L+GH RV + P G + + D
Sbjct: 341 PHYKELIS---GHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAAD 396
Query: 302 HSWRLW 307
+ RLW
Sbjct: 397 ETLRLW 402
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 320 GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC----IMFLEGHLKSVFSVDFSP- 374
GH + V + + DG +A+GG D VW G + H +V +V + P
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 375 DGYHLAT--GSEDNAVKIWDL 393
LAT G+ D ++IW++
Sbjct: 299 QSNVLATGGGTSDRHIRIWNV 319
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
TP L GH +S ++F+ + + L + D + R+W G GH + + S
Sbjct: 238 TPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS 296
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
+ GD V++ +D R+W L+ + +F+ S DG A D V
Sbjct: 297 WVGDDKVISCS-MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN 355
Query: 390 IWDLRK 395
++DL+K
Sbjct: 356 VYDLKK 361
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 81/213 (38%), Gaps = 17/213 (7%)
Query: 154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCS 213
PI ++ D H+ + + LW V ++Q F + +I +G++
Sbjct: 151 PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV 210
Query: 214 LASCAQD---------GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH 264
D G++ ++ + + TP L GH +S ++F+ + + L + D
Sbjct: 211 DVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDG 269
Query: 265 SWRL-----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE 319
+ R+ GH VS + + + +C D S RLW L Q +
Sbjct: 270 TLRIWHGGNGNSQNCFYGHSQSIVSA-SWVGDDKVI-SCSMDGSVRLWSLKQNTLLALSI 327
Query: 320 GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLR 352
G P++ DG A +D V+DL+
Sbjct: 328 VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 325 VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSE 384
V C+++ DG+ + TG + R+W+ +TG + L H + SV ++ DG H+ +
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV 169
Query: 385 DNAVKIWDLRKRRLLK 400
+N +W++ +++
Sbjct: 170 ENVTILWNVISGTVMQ 185
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
+G PIS F+ ++ + +AS G ++W F GH ++ + +
Sbjct: 244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV----- 298
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLA 235
+ SC+ DGSV+LWSL ++T LA
Sbjct: 299 -GDDKVISCSMDGSVRLWSLKQNTLLA 324
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 320 GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL 379
GH P+ + F ++ + D R+W G GH +S+ S + D +
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVI 304
Query: 380 ATGSEDNAVKIWDLRKRRLL 399
+ S D +V++W L++ LL
Sbjct: 305 SC-SMDGSVRLWSLKQNTLL 323
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
+S + + G +L +LWD+ Q + + + H V +S+ + ++++G
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR 127
Query: 343 DAFGRVWDLRTGRC-IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
D+R + L GH + V + ++PDG HLA+G DN V +W
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 22/194 (11%)
Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP----SGRFLGTCCWDHSWRL- 268
LA V+LW + + L N+ H RV + ++ SG G H R+
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSA-RVGSLSWNSYILSSGSRSGHIH-HHDVRVA 139
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG-------QEVLHQEGH 321
+ +A L GH V +++ P GR L + D+ +W G Q +G
Sbjct: 140 EHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 198
Query: 322 GKPVYCMSFQGDGSVVATGG--LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL 379
K V +Q + V+ATGG D R+W++ +G C+ ++ H V S+ +SP L
Sbjct: 199 VKAVAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKEL 255
Query: 380 ATGS--EDNAVKIW 391
+G N + IW
Sbjct: 256 ISGHGFAQNQLVIW 269
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 28/186 (15%)
Query: 136 QKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE----LVQTFR 191
+ H+ +LS + +V R ++PD +H+A+ L +W E +QTF
Sbjct: 140 EHHVATLSGHSQEVCGLR------WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 193
Query: 192 GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFH 251
H V A+ + P S V + D +++W++ L+ ++ H +V I +
Sbjct: 194 QHQGAVKAVAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWS 249
Query: 252 PSGRFLGTCCWDHS--------WRLDT--PLANLEGHEPFRVSRIKFHPSGRFLGTCCWD 301
P + L + H W+ T +A L+GH RV + P G + + D
Sbjct: 250 PHYKELIS---GHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAAD 305
Query: 302 HSWRLW 307
+ RLW
Sbjct: 306 ETLRLW 311
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/257 (20%), Positives = 102/257 (39%), Gaps = 35/257 (13%)
Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL 214
IS ++ + ++A + S +LW V + + ++ H VG++ ++ L
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI-------L 122
Query: 215 ASCAQDGSVKLWSLD-KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA 273
+S ++ G + + + +A L GH V +++ P GR L + D+ +
Sbjct: 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181
Query: 274 NLEGHEPFRVSRIKFHPSGRFLGTCCW------------DHSWRLWDLNQGQEVLHQEGH 321
G P + + + + + + C W D R+W++ G + + H
Sbjct: 182 GEGGWVPLQ-TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 322 GK-------PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP 374
+ P Y G G A L +W T + L+GH V S+ SP
Sbjct: 241 SQVCSILWSPHYKELISGHG--FAQNQL----VIWKYPTMAKVAELKGHTSRVLSLTMSP 294
Query: 375 DGYHLATGSEDNAVKIW 391
DG +A+ + D +++W
Sbjct: 295 DGATVASAAADETLRLW 311
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 319 EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-------RCIMFLEGHLKSVFSVD 371
GH + V + + DG +A+GG D VW G + +G +K+V
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
Query: 372 FSPDGYHLATGSEDNAVKIWDL 393
+ + G+ D ++IW++
Sbjct: 207 WQSNVLATGGGTSDRHIRIWNV 228
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 276 EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS 335
E E V+ +K+ G FL + ++D+ ++ GH V C+S+ +
Sbjct: 130 ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRH 187
Query: 336 VVATGGLDAFGRVWDLRTGR-CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
V+++G D+R I L+GH V + + DG LA+G DN V+IWD R
Sbjct: 188 VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 18/192 (9%)
Query: 213 SLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-----HSWR 267
++ + A + +V +W+ D + A E E V+ +K+ G FL + +
Sbjct: 105 NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164
Query: 268 LDTPLANLEGHEPFRVSRIKFH----PSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGK 323
T L + GH+ RV + ++ SG G H R+ ++ +GH
Sbjct: 165 SQTKLRTMAGHQA-RVGCLSWNRHVLSSGSRSGAIH-HHDVRI----ANHQIGTLQGHSS 218
Query: 324 PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP-DGYHLAT- 381
V ++++ DG +A+GG D ++WD R+ H +V +V + P LAT
Sbjct: 219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278
Query: 382 -GSEDNAVKIWD 392
G+ D + W+
Sbjct: 279 GGTMDKQIHFWN 290
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 314 EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR-------CIMFLEGHLKS 366
+VL + H K + ++++ S++A G D+ +W + +EGH
Sbjct: 50 DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENE 109
Query: 367 VFSVDFSPDGYHLATGSEDNAVKIWD 392
V V +S DGY+LAT S D +V IW+
Sbjct: 110 VKGVAWSNDGYYLATCSRDKSVWIWE 135
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 114/277 (41%), Gaps = 41/277 (14%)
Query: 153 RPISYCSFSPDSQHVATASWSGLCKLWTVPEC-------ELVQTFRGHDCNVGAIEFHPL 205
+ I ++ P + +A S+ +W E +L+ GH+ V + +
Sbjct: 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW--- 115
Query: 206 PSEGAVCSLASCAQDGSVKLWSLDKDTP----LANLEGHEPFRVSRIKFHPSGRFLGTCC 261
++G LA+C++D SV +W D+ ++ L+ H V + +HPS L +
Sbjct: 116 SNDGYY--LATCSRDKSVWIWETDESGEEYECISVLQEHSQ-DVKHVIWHPSEALLASSS 172
Query: 262 WDHSWRLDTP-------LANLEGHEPFRVSRIKFHPSGRF-LGTCCWDHSWRLWDLNQGQ 313
+D + R+ +A L GHE S G F L + D + R+W
Sbjct: 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232
Query: 314 EVLHQEG---------HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL 364
E QE H + VY +++ +G ++A+ G D V++ G +F + L
Sbjct: 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRAL 291
Query: 365 -KSVFSVD----FSPDGYH-LATGSEDNAVKIWDLRK 395
V+ ++ +G LATG +D V W L K
Sbjct: 292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 320 GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL 379
GH +P+ + + +G ++ + D+ VW G + L+GH +++S+D +
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 380 ATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESL--NPGIGNI 434
TGS D ++K+WD+ + + +P S + ++ +L+++ NPG NI
Sbjct: 90 VTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 275 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG 334
L GHE ++++K++ G L +C D S +W G+ + +GH ++ +
Sbjct: 28 LTGHER-PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDG-YHLATGSEDNAVK 389
TG D ++WD+ G+C+ + + V V+FSP G Y LA DN +K
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAI--LDNVMK 139
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 52/274 (18%), Positives = 94/274 (34%), Gaps = 28/274 (10%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
G RP++ ++ + + + S +W E + T GH + +I+
Sbjct: 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK- 87
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
C S D S+KLW + +A + P V R++F P G + L
Sbjct: 88 --YCVTGSA--DYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAI-------L 134
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
D + N + + R H +++ EG
Sbjct: 135 DNVMKNPGSINIYEIER------------DSATHELTKVSEEPIHKIITHEGLDAAT-VA 181
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
+ G + G D +D+ + ++ H KS+ + FSPD + T S D
Sbjct: 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN 241
Query: 388 VKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYI 421
+ D+ ++LK P + V + L + I
Sbjct: 242 SFLVDVSTLQVLKKYETDCPLNTAVITPLKEFII 275
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-------GHLKSVFSVDFS 373
H K V+ + + DGS+ A+ G D +++ G E H SVF + +S
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 374 PDGYHLATGSEDNAVKIWD---LRKRRLLKWCTQLLPNSIGVT----SLLTDLYIDVLES 426
PDG +A+ S D +KIW+ L+ + + T++ +G+ +L++ +
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308
Query: 427 LNPGIGNI 434
+NP +G+I
Sbjct: 309 VNPELGSI 316
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE--GHGKPVYCMSFQGDGS-VVATG-GL 342
K PSG + + + R+WD Q +L PV +S+ + + A G G
Sbjct: 66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR 125
Query: 343 DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD-GYHLATGSEDNAVKIWD 392
+ FG V+ TG L G +++ SVDF P + + +GS+DN V I++
Sbjct: 126 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 176
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 363 HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
H V V +SPD LATGS DN+V +W++ K
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 280 PFRVSRIKFHPSGRFLGTCCWDHSWRL--WDLNQGQEVLHQEG---HGKPVYCMSFQGDG 334
P ++ + F +G FL D S ++ + + E+ H H V C+S+ D
Sbjct: 491 PAEITSVAFSNNGAFL--VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 548
Query: 335 SVVATGGLDAFGRVWDLR--TGRCIMFLEGH-LKSVFSVDFSPDGYHLATGSEDNAVKIW 391
+ATG LD VW++ + I+ H + SV SV + + ++ G +D+ +K W
Sbjct: 549 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG-QDSNIKFW 607
Query: 392 DL 393
++
Sbjct: 608 NV 609
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 294 FLGTCCWDHSWRLWDL---NQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVW 349
G+ D +WD N + + H V C+SF ++ATG D +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 350 DLRTGRCIMF-LEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRK 395
DLR + + E H +F V +SP + LA+ D + +WDL K
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 348 VWDLR---TGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRKRRL 398
+WD R T + ++ H V + F+P + LATGS D V +WDLR +L
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 308
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 294 FLGTCCWDHSWRLWDL---NQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVW 349
G+ D +WD N + + H V C+SF ++ATG D +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 350 DLRTGRCIMF-LEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRK 395
DLR + + E H +F V +SP + LA+ D + +WDL K
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 294 FLGTCCWDHSWRLWDLN---QGQEVLHQE----GHGKPVYCMSFQG-DGSVVATGGLDAF 345
+L + DH+ LWD+N + V+ + GH V +++ S+ + D
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 346 GRVWDLR---TGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRKRRL 398
+WD R T + ++ H V + F+P + LATGS D V +WDLR +L
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 301 DHSWRLWDLNQG-------QEVLHQEGHGKPVYCMSFQGDG-SVVATGGLDAFGRVWDLR 352
D + +W++ G + V+ EGH K V +++ +V+ + G D VWD+
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162
Query: 353 TGRCIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
TG ++ L + H +++SVD+S DG + T D V++ + RK
Sbjct: 163 TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 67/185 (36%), Gaps = 22/185 (11%)
Query: 150 GDTRPISYCSFSPDSQHV-ATASWSGLCKLWTVPECELVQTFR-------GHDCNVGAIE 201
G T P+ ++ P + +V A+ S +W +P+ LV R GH VG +
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 202 FHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGH-EPFRVSRIKFHPSGRFLGTC 260
+HP A L S D + +W + + L P + + + G + T
Sbjct: 139 WHPT----AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194
Query: 261 CWDHSWRLDTPLANL------EGHEPFRVSRIKFHPSGRFLGTCCWDHSWR---LWDLNQ 311
C D R+ P HE R F G+ L T S R LWD
Sbjct: 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254
Query: 312 GQEVL 316
+E L
Sbjct: 255 LEEPL 259
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 294 FLGTCCWDHSWRLWDL---NQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVW 349
G+ D +WD N + + H V C+SF ++ATG D +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 350 DLRTGRCIMF-LEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRK 395
DLR + + E H +F V +SP + LA+ D + +WDL K
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 294 FLGTCCWDHSWRLWDLN---QGQEVLHQE----GHGKPVYCMSFQG-DGSVVATGGLDAF 345
+L + DH+ LWD+N + V+ + GH V +++ S+ + D
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 346 GRVWDLR---TGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRKRRL 398
+WD R T + ++ H V + F+P + LATGS D V +WDLR +L
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 306 LWDLNQG-------QEVLHQEGHGKPVYCMSFQGDG-SVVATGGLDAFGRVWDLRTGRCI 357
+W++ G + V+ EGH K V +++ +V+ + G D VWD+ TG +
Sbjct: 108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAV 167
Query: 358 MFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
+ L + H +++SVD+S DG + T D V++ + RK
Sbjct: 168 LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 67/185 (36%), Gaps = 22/185 (11%)
Query: 150 GDTRPISYCSFSPDSQHV-ATASWSGLCKLWTVPECELVQTFR-------GHDCNVGAIE 201
G T P+ ++ P + +V A+ S +W +P+ LV R GH VG +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 202 FHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGH-EPFRVSRIKFHPSGRFLGTC 260
+HP A L S D + +W + + L P + + + G + T
Sbjct: 139 WHPT----AQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194
Query: 261 CWDHSWRLDTPLANL------EGHEPFRVSRIKFHPSGRFLGTCCWDHSWR---LWDLNQ 311
C D R+ P HE R F G+ L T S R LWD
Sbjct: 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254
Query: 312 GQEVL 316
+E L
Sbjct: 255 LEEPL 259
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 294 FLGTCCWDHSWRLWDL---NQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVW 349
G+ D +WD N + + H V C+SF ++ATG D +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 350 DLRTGRCIMF-LEGHLKSVFSVDFSPDGYH-LATGSEDNAVKIWDLRK 395
DLR + + E H +F V +SP LA+ D + +WDL K
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 348 VWDLR---TGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRKRRL 398
+WD R T + ++ H V + F+P + LATGS D V +WDLR +L
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 53/126 (42%), Gaps = 25/126 (19%)
Query: 291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS-FQGDGSVVATGGL-----DA 344
SG L DH+ LWD+N G + GK V + F G +VV
Sbjct: 192 SGHLLSASD-DHTVCLWDINAGPK------EGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 345 FGRV--------WDLR---TGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWD 392
FG V WD R T + ++ H V + F+P + LATGS D V +WD
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 393 LRKRRL 398
LR +L
Sbjct: 305 LRNLKL 310
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 53/126 (42%), Gaps = 25/126 (19%)
Query: 291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS-FQGDGSVVATGGL-----DA 344
SG L DH+ LWD+N G + GK V + F G +VV
Sbjct: 192 SGHLLSASD-DHTVCLWDINAGPK------EGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 345 FGRV--------WDLR---TGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWD 392
FG V WD R T + ++ H V + F+P + LATGS D V +WD
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 393 LRKRRL 398
LR +L
Sbjct: 305 LRNLKL 310
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 313 QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMF---LEGHLKSVF 368
Q + H GHG + + F D +++ + D R+W+++T + +EGH V
Sbjct: 142 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 201
Query: 369 SVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
S D+ G + + D+++K+W + +R++
Sbjct: 202 SADYDLLGEKIMSCGMDHSLKLWRINSKRMM 232
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 158 CSFSPDSQH----VATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCS 213
C+++ DS +A A G+ ++ + ++ + GH + ++FHP
Sbjct: 111 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN----L 166
Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFR--VSRIKFHPSGRFLGTCCWDHS---WRL 268
L S ++D +++LW++ DT +A G E R V + G + +C DHS WR+
Sbjct: 167 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Query: 269 DT 270
++
Sbjct: 227 NS 228
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 245 VSRIKFHPSG-RFLGTCCWDHSWRL-----DTPLANLEGHEPFR--VSRIKFHPSGRFLG 296
++ +KFHP L + DH+ RL DT +A G E R V + G +
Sbjct: 154 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 213
Query: 297 TCCWDHSWRLWDLN 310
+C DHS +LW +N
Sbjct: 214 SCGMDHSLKLWRIN 227
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
++++KF PSG L + D ++W + G GH V ++ G V + L
Sbjct: 139 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 198
Query: 343 DAFGRVWDLRTGRCI 357
D R+W+ TG I
Sbjct: 199 DGTIRLWECGTGTTI 213
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 293 RF-LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
RF LGT D + N +E+ + H + + F G + + D ++W +
Sbjct: 108 RFILGTTEGDIKVLDSNFNLQREI--DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
+ G L GH +V + G ++ + S D +++W+
Sbjct: 166 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 313 QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMF---LEGHLKSVF 368
Q + H GHG + + F D +++ + D R+W+++T + +EGH V
Sbjct: 106 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 165
Query: 369 SVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
S D+ G + + D+++K+W + +R++
Sbjct: 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 158 CSFSPDSQH----VATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCS 213
C+++ DS +A A G+ ++ + ++ + GH + ++FHP
Sbjct: 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN----L 130
Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFR--VSRIKFHPSGRFLGTCCWDHS---WRL 268
L S ++D +++LW++ DT +A G E R V + G + +C DHS WR+
Sbjct: 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Query: 269 DT 270
++
Sbjct: 191 NS 192
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 245 VSRIKFHPSG-RFLGTCCWDHSWRL-----DTPLANLEGHEPFR--VSRIKFHPSGRFLG 296
++ +KFHP L + DH+ RL DT +A G E R V + G +
Sbjct: 118 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 177
Query: 297 TCCWDHSWRLWDLN 310
+C DHS +LW +N
Sbjct: 178 SCGMDHSLKLWRIN 191
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 313 QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMF---LEGHLKSVF 368
Q + H GHG + + F D +++ + D R+W+++T + +EGH V
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 369 SVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
S D+ G + + D+++K+W + +R++
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLWRINSKRMM 195
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 158 CSFSPDSQH----VATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCS 213
C+++ DS +A A G+ ++ + ++ + GH + ++FHP
Sbjct: 74 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN----L 129
Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFR--VSRIKFHPSGRFLGTCCWDHS---WRL 268
L S ++D +++LW++ DT +A G E R V + G + +C DHS WR+
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 269 DT 270
++
Sbjct: 190 NS 191
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 245 VSRIKFHPSG-RFLGTCCWDHSWRL-----DTPLANLEGHEPFR--VSRIKFHPSGRFLG 296
++ +KFHP L + DH+ RL DT +A G E R V + G +
Sbjct: 117 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 176
Query: 297 TCCWDHSWRLWDLN 310
+C DHS +LW +N
Sbjct: 177 SCGMDHSLKLWRIN 190
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 313 QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMF---LEGHLKSVF 368
Q + H GHG + + F D +++ + D R+W+++T + +EGH V
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 369 SVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
S D+ G + + D+++K+W + +R++
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLWRINSKRMM 195
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 158 CSFSPDSQH----VATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCS 213
C+++ DS +A A G+ ++ + ++ + GH + ++FHP
Sbjct: 74 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN----L 129
Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFR--VSRIKFHPSGRFLGTCCWDHS---WRL 268
L S ++D +++LW++ DT +A G E R V + G + +C DHS WR+
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 269 DT 270
++
Sbjct: 190 NS 191
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 245 VSRIKFHPSG-RFLGTCCWDHSWRL-----DTPLANLEGHEPFR--VSRIKFHPSGRFLG 296
++ +KFHP L + DH+ RL DT +A G E R V + G +
Sbjct: 117 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 176
Query: 297 TCCWDHSWRLWDLN 310
+C DHS +LW +N
Sbjct: 177 SCGMDHSLKLWRIN 190
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
++++KF PSG L + D ++W + G GH V ++ G V + L
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 201
Query: 343 DAFGRVWDLRTGRCI 357
D R+W+ TG I
Sbjct: 202 DGTIRLWECGTGTTI 216
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 293 RF-LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
RF LGT D + N +E+ + H + + F G + + D ++W +
Sbjct: 111 RFILGTTEGDIKVLDSNFNLQREI--DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
+ G L GH +V + G ++ + S D +++W+
Sbjct: 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 313 QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMF---LEGHLKSVF 368
Q + H GHG + + F D +++ + D R+W+++T + +EGH V
Sbjct: 101 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 160
Query: 369 SVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
S D+ G + + D+++K+W + +R++
Sbjct: 161 SADYDLLGEKIMSCGMDHSLKLWRINSKRMM 191
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 158 CSFSPDSQH----VATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCS 213
C+++ DS +A A G+ ++ + ++ + GH + ++FHP
Sbjct: 70 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN----L 125
Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFR--VSRIKFHPSGRFLGTCCWDHS---WRL 268
L S ++D +++LW++ DT +A G E R V + G + +C DHS WR+
Sbjct: 126 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Query: 269 DT 270
++
Sbjct: 186 NS 187
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 245 VSRIKFHPSG-RFLGTCCWDHSWRL-----DTPLANLEGHEPFR--VSRIKFHPSGRFLG 296
++ +KFHP L + DH+ RL DT +A G E R V + G +
Sbjct: 113 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 172
Query: 297 TCCWDHSWRLWDLN 310
+C DHS +LW +N
Sbjct: 173 SCGMDHSLKLWRIN 186
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 305 RLWDLNQGQEVLHQE----GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL 360
LW+L++ + ++ + H V +S G+ +G D +VWDL +
Sbjct: 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY 165
Query: 361 EGHLKSVFSVDFSP--DGYHLATGSEDNAVKIWDLR 394
H V V SP D L+ SEDN + +WD R
Sbjct: 166 RAHAAQVTCVAASPHKDSVFLSC-SEDNRILLWDTR 200
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 283 VSRIKFHP-SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPV----YCMSFQGDGSVV 337
V ++F P SG F+ T D +D G+ + + E +PV + +S+ D
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKF 267
Query: 338 ATGGLDAFGRVWDLRTGRCI 357
AT G DA RVWD+ T +C+
Sbjct: 268 ATVGADATIRVWDVTTSKCV 287
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 283 VSRIKFHP-SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPV----YCMSFQGDGSVV 337
V ++F P SG F+ T D +D G+ + + E +PV + +S+ D
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKF 267
Query: 338 ATGGLDAFGRVWDLRTGRCI 357
AT G DA RVWD+ T +C+
Sbjct: 268 ATVGADATIRVWDVTTSKCV 287
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 305 RLWDLNQGQEVL----HQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL 360
LW++ + + +L + H V +S DG+ +GG D +VWDL +
Sbjct: 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY 177
Query: 361 EGHLKSVFSVDFSP--DGYHLATGSEDNAVKIWDLRKRR 397
H V V P D L+ G ED + +WD RK +
Sbjct: 178 NAHSSEVNCVAACPGKDTIFLSCG-EDGRILLWDTRKPK 215
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 366 SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
SVFS DG +G +D +VK+WDL ++ +LK
Sbjct: 146 SVFS-----DGTQAVSGGKDFSVKVWDLSQKAVLK 175
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 177 KLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN 236
K+W + + +++++ H V + P G SC +DG + LW K P
Sbjct: 164 KVWDLSQKAVLKSYNAHSSEVNCVAACP----GKDTIFLSCGEDGRILLWDTRKPKPATR 219
Query: 237 LE 238
++
Sbjct: 220 ID 221
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 89/227 (39%), Gaps = 38/227 (16%)
Query: 204 PLPSEGAVCSL--ASCAQDGSVKLWSL---DKDTPLANLEGHEPFRVSRIKFHPSGRFLG 258
PL G V A+ + D S++LWSL D + P+A+L+ F + + + + +
Sbjct: 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFN--DLDWSHNNKIIA 83
Query: 259 TCCWDHSWRLDT---------PLANLEGHEPFRVSRIKFHPS-GRFLGTCCWDHSWRLWD 308
+ S L + +A H V +KF+ L + + +WD
Sbjct: 84 GALDNGSLELYSTNEANNAINSMARFSNHSS-SVKTVKFNAKQDNVLASGGNNGEIFIWD 142
Query: 309 LNQGQEVLHQEGHGKPVYCMSF----------QGDGSVVATGGLDAFGRVWDLRTGRCIM 358
+N+ E P MS Q V A+ G F +WDL+ + ++
Sbjct: 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI 202
Query: 359 FL------EGHLKSVFSVDFSPDG---YHLATGSE-DNAVKIWDLRK 395
L G + + V++ P ATGS+ D ++ IWDLR
Sbjct: 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 306 LWDLNQGQEVLH------QEGHGKPVYCMSFQGDGS---VVATGG-LDAFGRVWDLRTGR 355
+WDL +EV+H G + + + + S ATG D +WDLR
Sbjct: 192 IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251
Query: 356 CIM--FLEGHLKSVFSVDFSPDGYHLATGS-EDNAVKIWDLRKRRLL-------KWC--T 403
+ +GH K + S+D+ HL S DN V +W+ L WC T
Sbjct: 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKT 311
Query: 404 QLLP 407
+ P
Sbjct: 312 KFAP 315
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 60/178 (33%), Gaps = 34/178 (19%)
Query: 198 GAIEFHPLPSEGAVCS-------LASCAQDGSVKLWSLDKDTPLANLEGHEPF-----RV 245
G +E PS+ A +A+ +G+V++ L PL N E +
Sbjct: 177 GTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236
Query: 246 SRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWR 305
+KF P G L +S+ T L E E + H S
Sbjct: 237 RSVKFSPQGSLLAIAHDSNSFGCIT-LYETEFGERIGSLSVPTHSS-------------- 281
Query: 306 LWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH 363
Q L + H V +SF G + + G D R WD++T I L H
Sbjct: 282 -------QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ---EVLHQEGHGKPVYCMSFQGD------ 333
+S +KF SGR++ T + S ++WDLN E + + C ++ D
Sbjct: 288 ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKF 346
Query: 334 -------GSVVATGGLDAFGRVWDLRTGRCI 357
SVV TG + F R++D T R I
Sbjct: 347 ECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 337 VATGGLDAFGRVWDLRTGR---CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
+AT +D ++WDLR R ++ H V + FSPDG L T + + ++++
Sbjct: 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 326 YC-MSFQGDGSVVATGGLDAFGRVWDLRT-GRCIMFLEGHLKSVFSVDFSPD-GYHLATG 382
+C + +V TG D G V L G+ + L H K V V +P + LAT
Sbjct: 212 FCSLDVSASSRMVVTG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATA 269
Query: 383 SEDNAVKIWDLRKRR 397
S D VKIWDLR+ R
Sbjct: 270 SVDQTVKIWDLRQVR 284
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 35/194 (18%)
Query: 272 LANLEGHEPFRVSRIKFHPS-GRFLGTCCWDHSWRLWDLNQGQ---EVLHQEGHGKPVYC 327
L NL H+ +V+ + +P FL T D + ++WDL Q + L+ H PV
Sbjct: 243 LWNLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNA 301
Query: 328 MSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFS-----------------V 370
F DG+ + T + RV+ C + L H F V
Sbjct: 302 ACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361
Query: 371 DFSPD-GYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNP 429
PD + T E + ++D +++ C P S G++S L NP
Sbjct: 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMM--CQLYDPESSGISS---------LNEFNP 410
Query: 430 GIGNIISSALKEQV 443
+G+ ++SA+ +
Sbjct: 411 -MGDTLASAMGYHI 423
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 337 VATGGLDAFGRVWDLRTGR---CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
+AT +D ++WDLR R ++ H V + FSPDG L T + + ++++
Sbjct: 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 326 YC-MSFQGDGSVVATGGLDAFGRVWDLRT-GRCIMFLEGHLKSVFSVDFSPD-GYHLATG 382
+C + +V TG D G V L G+ + L H K V V +P + LAT
Sbjct: 212 FCSLDVSASSRMVVTG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATA 269
Query: 383 SEDNAVKIWDLRKRR 397
S D VKIWDLR+ R
Sbjct: 270 SVDQTVKIWDLRQVR 284
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 35/194 (18%)
Query: 272 LANLEGHEPFRVSRIKFHPS-GRFLGTCCWDHSWRLWDLNQGQ---EVLHQEGHGKPVYC 327
L NL H+ +V+ + +P FL T D + ++WDL Q + L+ H PV
Sbjct: 243 LWNLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNA 301
Query: 328 MSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFS-----------------V 370
F DG+ + T + RV+ C + L H F V
Sbjct: 302 ACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361
Query: 371 DFSPD-GYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNP 429
PD + T E + ++D +++ C P S G++S L NP
Sbjct: 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMM--CQLYDPESSGISS---------LNEFNP 410
Query: 430 GIGNIISSALKEQV 443
+G+ ++SA+ +
Sbjct: 411 -MGDTLASAMGYHI 423
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 60/178 (33%), Gaps = 34/178 (19%)
Query: 198 GAIEFHPLPSEGAVCS-------LASCAQDGSVKLWSLDKDTPLANLEGHEPF-----RV 245
G +E PS+ A +A+ +G+V++ L PL N E +
Sbjct: 187 GTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 246
Query: 246 SRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWR 305
+KF P G L +S+ T L E E + H S
Sbjct: 247 RSVKFSPQGSLLAIAHDSNSFGCIT-LYETEFGERIGSLSVPTHSS-------------- 291
Query: 306 LWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH 363
Q L + H V +SF G + + G D R WD++T I L H
Sbjct: 292 -------QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 337 VATGGLDAFGRVWDLRTGR---CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
+AT +D ++WDLR R ++ H V + FSPDG L T + + ++++
Sbjct: 267 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 324
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 336 VVATGGLDAFGRVWDLRT-GRCIMFLEGHLKSVFSVDFSPD-GYHLATGSEDNAVKIWDL 393
+V TG D G V L G+ + L H K V V +P + LAT S D VKIWDL
Sbjct: 224 MVVTG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 281
Query: 394 RKRR 397
R+ R
Sbjct: 282 RQVR 285
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 35/194 (18%)
Query: 272 LANLEGHEPFRVSRIKFHPS-GRFLGTCCWDHSWRLWDLNQGQ---EVLHQEGHGKPVYC 327
L NL H+ +V+ + +P FL T D + ++WDL Q + L+ H PV
Sbjct: 244 LWNLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNA 302
Query: 328 MSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFS-----------------V 370
F DG+ + T + RV+ C + L H F V
Sbjct: 303 ACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV 362
Query: 371 DFSPD-GYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNP 429
PD + T E + ++D +++ C P S G++S L NP
Sbjct: 363 GRYPDPNFKSCTPYELRTIDVFDGNSGKMM--CQLYDPESSGISS---------LNEFNP 411
Query: 430 GIGNIISSALKEQV 443
+G+ ++SA+ +
Sbjct: 412 -MGDTLASAMGYHI 424
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 86/217 (39%), Gaps = 36/217 (16%)
Query: 185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR 244
+L+ T GH+ V +++ P G + LASC+ DG V +W E R
Sbjct: 44 KLIDTLTGHEGPVWRVDWAH-PKFGTI--LASCSYDGKVLIWK------------EENGR 88
Query: 245 VSRIKFHPS-GRFLGTCCWD-HSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH 302
S+I H + + W H + +A+ +G +VS ++F +G H
Sbjct: 89 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG----KVSVVEFKENGTTSPIIIDAH 144
Query: 303 SWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGLDAFGRVW----DLRTGRCI 357
+ + + + ++G H F TGG D ++W D +T
Sbjct: 145 AIGVNSASWAPATIEEDGEHNGTKESRKF-------VTGGADNLVKIWKYNSDAQTYVLE 197
Query: 358 MFLEGHLKSVFSVDFSPDGY---HLATGSEDNAVKIW 391
LEGH V V +SP +LA+ S+D IW
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 165 QHVATASWSGLCKLWTVPE----CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD 220
+HVAT S K++ + + EL ++R HD ++ AI++ P G + +AS + D
Sbjct: 24 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS-PEYGRI--IASASYD 80
Query: 221 GSVKLWSLDKD 231
+VKLW D D
Sbjct: 81 KTVKLWEEDPD 91
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 165 QHVATASWSGLCKLWTVPE----CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD 220
+HVAT S K++ + + EL ++R HD ++ AI++ P G + +AS + D
Sbjct: 22 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS-PEYGRI--IASASYD 78
Query: 221 GSVKLWSLDKD 231
+VKLW D D
Sbjct: 79 KTVKLWEEDPD 89
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 165 QHVATASWSGLCKLWTVPE----CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD 220
+HVAT S K++ + + EL ++R HD ++ AI++ P G + +AS + D
Sbjct: 24 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS-PEYGRI--IASASYD 80
Query: 221 GSVKLWSLDKD 231
+VKLW D D
Sbjct: 81 KTVKLWEEDPD 91
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 86/217 (39%), Gaps = 36/217 (16%)
Query: 185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR 244
+L+ T GH+ V +++ P G + LASC+ DG V +W E R
Sbjct: 46 KLIDTLTGHEGPVWRVDW-AHPKFGTI--LASCSYDGKVLIWK------------EENGR 90
Query: 245 VSRIKFHP-SGRFLGTCCWD-HSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH 302
S+I H + + W H + +A+ +G +VS ++F +G H
Sbjct: 91 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG----KVSVVEFKENGTTSPIIIDAH 146
Query: 303 SWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGLDAFGRVW----DLRTGRCI 357
+ + + + ++G H F TGG D ++W D +T
Sbjct: 147 AIGVNSASWAPATIEEDGEHNGTKESRKF-------VTGGADNLVKIWKYNSDAQTYVLE 199
Query: 358 MFLEGHLKSVFSVDFSPDGY---HLATGSEDNAVKIW 391
LEGH V V +SP +LA+ S+D IW
Sbjct: 200 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 305 RLWDLNQGQ-EVLHQEGHGKPVYCMSFQGDG---SVVATGGLDAFGRVWDLRTGRCIMF- 359
+L+++ G ++L + KP+ C +F +ATG +W+L ++
Sbjct: 47 QLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS 106
Query: 360 LEGHLKSVFSVDFSPD------GYHLATGSEDNAVKIWDLRKR 396
++GH + + ++D + TGS D VK+WD R++
Sbjct: 107 VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK 149
>pdb|1MZW|B Chain B, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 31
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 86 QVKLNLRQLGEPICLFGE 103
+VK +LR LGEPI LFGE
Sbjct: 1 EVKASLRALGEPITLFGE 18
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 36/217 (16%)
Query: 185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR 244
+L+ T GH+ V +++ P G + LASC+ DG V +W E R
Sbjct: 44 KLIDTLTGHEGPVWRVDW-AHPKFGTI--LASCSYDGKVMIWK------------EENGR 88
Query: 245 VSRIKFHP-SGRFLGTCCWD-HSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH 302
S+I H + + W H + +A+ +G +VS ++F +G H
Sbjct: 89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG----KVSVVEFKENGTTSPIIIDAH 144
Query: 303 SWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGLDAFGRVW----DLRTGRCI 357
+ + + + ++G H F TGG D ++W D +T
Sbjct: 145 AIGVNSASWAPATIEEDGEHNGTKESRKF-------VTGGADNLVKIWKYNSDAQTYVLE 197
Query: 358 MFLEGHLKSVFSVDFSPDGY---HLATGSEDNAVKIW 391
LEGH V V +SP ++A+ S+D IW
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 86/217 (39%), Gaps = 36/217 (16%)
Query: 185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR 244
+L+ T GH+ V +++ P G + LASC+ DG V +W E R
Sbjct: 44 KLIDTLTGHEGPVWRVDW-AHPKFGTI--LASCSYDGKVLIWK------------EENGR 88
Query: 245 VSRIKFHP-SGRFLGTCCWD-HSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH 302
S+I H + + W H + +A+ +G +VS ++F +G H
Sbjct: 89 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG----KVSVVEFKENGTTSPIIIDAH 144
Query: 303 SWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGLDAFGRVW----DLRTGRCI 357
+ + + + ++G H F TGG D ++W D +T
Sbjct: 145 AIGVNSASWAPATIEEDGEHNGTKESRKF-------VTGGADNLVKIWKYNSDAQTYVLE 197
Query: 358 MFLEGHLKSVFSVDFSPDGY---HLATGSEDNAVKIW 391
LEGH V V +SP +LA+ S+D IW
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 36/217 (16%)
Query: 185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR 244
+L+ T GH+ V +++ P G + LASC+ DG V +W E R
Sbjct: 44 KLIDTLTGHEGPVWRVDW-AHPKFGTI--LASCSYDGKVXIWK------------EENGR 88
Query: 245 VSRIKFHP-SGRFLGTCCWD-HSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH 302
S+I H + + W H + +A+ +G +VS ++F +G H
Sbjct: 89 WSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDG----KVSVVEFKENGTTSPIIIDAH 144
Query: 303 SWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGLDAFGRVW----DLRTGRCI 357
+ + + + ++G H F TGG D ++W D +T
Sbjct: 145 AIGVNSASWAPATIEEDGEHNGTKESRKF-------VTGGADNLVKIWKYNSDAQTYVLE 197
Query: 358 MFLEGHLKSVFSVDFSPD---GYHLATGSEDNAVKIW 391
LEGH V V +SP + A+ S+D IW
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIW 234
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIG 411
R G + + +K+ + P LA G+E++ + DL K + + W G
Sbjct: 145 RMGANFLKVVNQIKTRLGANPVP--LQLAIGAEEHFTGVVDLVKMKAINWNDA----DQG 198
Query: 412 VTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLT-FKFDSDLHAMVLNQ 470
VT D+ D++E N N+I SA + E + L ++LT + L VLN
Sbjct: 199 VTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNN 258
Query: 471 K 471
+
Sbjct: 259 E 259
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIG 411
R G + + +K+ + P LA G+E++ + DL K + + W G
Sbjct: 146 RMGANFLKVVNQIKTRLGANPVP--LQLAIGAEEHFTGVVDLVKMKAINWNDA----DQG 199
Query: 412 VTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLT-FKFDSDLHAMVLNQ 470
VT D+ D++E N N+I SA + E + L ++LT + L VLN
Sbjct: 200 VTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNN 259
Query: 471 K 471
+
Sbjct: 260 E 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,640,988
Number of Sequences: 62578
Number of extensions: 620811
Number of successful extensions: 2393
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 516
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)