BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11351
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 21/126 (16%)
Query: 1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR 60
+ G+ I+V ++ D +S D+ + L +P Y +S+ PS+ I A G+
Sbjct: 463 LEEGNTIQVFKL---SDLEVSFDLKTP------LRAKPSY-ISISPSETYIAAGDVX-GK 511
Query: 61 VLLFDTRSRE-EATELAVNSGPFHAVMFNP---------VEARLVATANSKDGIALYDTR 110
+LL+D +SRE + + A + +A+ + P +E LVAT + I +Y +
Sbjct: 512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571
Query: 111 KPKEVL 116
+P +++
Sbjct: 572 RPXKII 577
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 21/126 (16%)
Query: 1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR 60
+ G+ I+V ++ D +S D+ + L +P Y +S+ PS+ I A G+
Sbjct: 463 LEEGNTIQVFKL---SDLEVSFDLKTP------LRAKPSY-ISISPSETYIAAGDVM-GK 511
Query: 61 VLLFDTRSRE-EATELAVNSGPFHAVMFNP---------VEARLVATANSKDGIALYDTR 110
+LL+D +SRE + + A + +A+ + P +E LVAT + I +Y +
Sbjct: 512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571
Query: 111 KPKEVL 116
+P +++
Sbjct: 572 RPMKII 577
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 32 FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF--HAVMFNP 89
+ H V ++ P +D++F S +D R+LL+DTR + A+++ ++ + ++ ++P
Sbjct: 165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP 224
Query: 90 VEARLVATANSKDGIALYDTRKPKEVL 116
++ + + ++L DT+ VL
Sbjct: 225 QQSEVFVFGDENGTVSLVDTKSTSCVL 251
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 42 LSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSK 101
L+ P Q +F ++G V L DT+S AV+S ++F+P +A+ +
Sbjct: 220 LAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279
Query: 102 DGIALYDT 109
+A+ D+
Sbjct: 280 CSLAVLDS 287
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 32 FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT---ELAVNSGPFHAVMFN 88
F H V +S +++F S DD +++++DTRS + + ++ + + FN
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 89 PVEARLVATANSKDGIALYDTRKPKEVLMQYGS 121
P ++AT ++ +AL+D R K L + S
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFES 315
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 48 QDAIFASACDDGRVLLFDTRSREEATE---LAVNSGPFHAVMFNPVEARLVATANSKDGI 104
+++F S DD +++++DTRS + + ++ + + FNP ++AT ++ +
Sbjct: 241 HESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTV 300
Query: 105 ALYDTRKPKEVLMQYGS 121
AL+D R K L + S
Sbjct: 301 ALWDLRNLKLKLHTFES 317
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 32 FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL---AVNSGPFHAVMFN 88
+ H V ++ P +D IF S +DGR+LL+DTR + AT + A ++ P +V ++
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPT-SVTWH 235
Query: 89 PVEARLVATANSKDGIALYDTRKP 112
P + A + ++L + + P
Sbjct: 236 PEKDDTFACGDETGNVSLVNIKNP 259
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 48 QDAIFASACDDGRVLLFDTRSREEAT---ELAVNSGPFHAVMFNPVEARLVATANSKDGI 104
+++F S DD +++++DTR+ + + ++ + + FNP ++AT ++ +
Sbjct: 243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTV 302
Query: 105 ALYDTRKPKEVLMQYGS 121
AL+D R K L + S
Sbjct: 303 ALWDLRNLKLKLHSFES 319
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS--REEATELAVNSGPFHA-----VMF 87
H++ YGLS +P+ + SA DD + L+D + +E A N H V +
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 239
Query: 88 NPVEARLVATANSKDGIALYDTR-----KPKEVLMQYGSCESCMSIR 129
+ + L + + ++DTR KP + + + +C+S
Sbjct: 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 48 QDAIFASACDDGRVLLFDTRSREEAT---ELAVNSGPFHAVMFNPVEARLVATANSKDGI 104
+++F S DD +++++DTR+ + + ++ + + FNP ++AT ++ +
Sbjct: 247 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTV 306
Query: 105 ALYDTRKPKEVLMQYGS 121
AL+D R K L + S
Sbjct: 307 ALWDLRNLKLKLHSFES 323
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS--REEATELAVNSGPFHA-----VMF 87
H++ YGLS +P+ + SA DD + L+D + +E A N H V +
Sbjct: 184 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 243
Query: 88 NPVEARLVATANSKDGIALYDTR-----KPKEVLMQYGSCESCMSIR 129
+ + L + + ++DTR KP + + + +C+S
Sbjct: 244 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 48 QDAIFASACDDGRVLLFDTRSREEAT---ELAVNSGPFHAVMFNPVEARLVATANSKDGI 104
+++F S DD +++++DTR+ + + ++ + + FNP ++AT ++ +
Sbjct: 245 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTV 304
Query: 105 ALYDTRKPKEVLMQYGS 121
AL+D R K L + S
Sbjct: 305 ALWDLRNLKLKLHSFES 321
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS--REEATELAVNSGPFHA-----VMF 87
H++ YGLS +P+ + SA DD + L+D + +E A N H V +
Sbjct: 182 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 241
Query: 88 NPVEARLVATANSKDGIALYDTR-----KPKEVLMQYGSCESCMSIR 129
+ + L + + ++DTR KP + + + +C+S
Sbjct: 242 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 48 QDAIFASACDDGRVLLFDTRSREEATE---LAVNSGPFHAVMFNPVEARLVATANSKDGI 104
+++F S DD ++ ++DTRS + + ++ + + FNP ++AT ++ +
Sbjct: 241 HESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTV 300
Query: 105 ALYDTRKPKEVLMQYGS 121
AL+D R K L + S
Sbjct: 301 ALWDLRNLKLKLHTFES 317
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 14 GNDDHVISHDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA 72
G D + DM SG + F HE V + PS DA FAS DD L+D R+ E
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA-FASGSDDATCRLYDLRADREV 275
Query: 73 TELAVNSGPFHAVMFN-PVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFN 131
+ S F A + + RL+ + I ++D K V + +G ++R +
Sbjct: 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335
Query: 132 KAGT 135
GT
Sbjct: 336 PDGT 339
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 143
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 193
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 248
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 140
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 190
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 245
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 136
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 186
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 187 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 241
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 242 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 270
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 133
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 183
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 184 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 238
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 239 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 267
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 140
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 190
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 245
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 142
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 192
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 193 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 247
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 248 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 276
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 140
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 190
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 245
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 137
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 187
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 242
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 138
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 188
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 189 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 243
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 244 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 272
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 154
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 204
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 205 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 259
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 260 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 288
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 143
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 193
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 248
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 137
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 187
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 242
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 143
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 193
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 248
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV---NSGPFHAVMFNPV 90
LH+ V +P D + A++ D V L+D R+ ++ + P +A FNP
Sbjct: 202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPT 261
Query: 91 EARLVATANSKDGIAL---YDTRKPKEVLMQ 118
++ + T + ++ I + YD KP ++++
Sbjct: 262 DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV---NSGPFHAVMFNPV 90
LH+ V +P D + A++ D V L+D R+ ++ + P +A FNP
Sbjct: 201 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPT 260
Query: 91 EARLVATANSKDGIAL---YDTRKPKEVLMQ 118
++ + T + ++ I + YD KP ++++
Sbjct: 261 DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 291
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVK 159
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 209
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 264
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 265 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 293
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVK 161
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ + L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 211
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 212 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 266
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 267 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI 295
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 16/176 (9%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
HE+ +Y L PS D + S D V ++D R+ + + L++ G V +P + +
Sbjct: 164 HEQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKY 221
Query: 95 VATANSKDGIALYDT-------RKPKEVLMQYGSCESCMSIRFNKAGTQXXXXXXXXPPV 147
+A + + ++D+ R E G +S S+ F + G
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 148 LYNTR-------SSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW 196
L+N + S +P + Y DEY++SGS D + W
Sbjct: 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 140
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 190
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 245
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 31/209 (14%)
Query: 10 LRVIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
L V +DD + D++SG + H V+ + +P + I + + D+ V ++D +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVK 140
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA-LYDTRKPKEVLMQYGSCESCM 126
+ L +S P AV FN + +V++ S DG+ ++DT G C +
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTAS--------GQCLKTL 190
Query: 127 S---------IRFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA 177
++F+ G L++ + + G+ N K C FA
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY--TGHKNE---KYCIFA 245
Query: 178 G---TQDEYVVSGSDDFVLYMWRVPRDDI 203
T +++VSGS+D ++Y+W + +I
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 33/195 (16%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTR--------------SREEATELA--VN 78
H + + +S P D I A+A D RV L+D R + +A E A +
Sbjct: 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244
Query: 79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSC--ESCMSIRFNKA--- 133
+G + + F L+ T + + + L+++ + L+ YG S ++F +
Sbjct: 245 NGKVNGLCFTSDGLHLL-TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303
Query: 134 GTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVL 193
++ +Y S + +G+Y + CC + + + SGS D +
Sbjct: 304 SSEFVFVPYGSTIAVYTVYSGEQITML--KGHYKTV---DCCVFQSNFQELYSGSRDCNI 358
Query: 194 YMWR------VPRDD 202
W VP DD
Sbjct: 359 LAWVPSLYEPVPDDD 373
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 31 DFYLHERPVYGLSVDPSQDAIF-ASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNP 89
++ L R + LS+ S D + AS DG + +FD + + L ++ P ++ F+P
Sbjct: 157 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 216
Query: 90 VEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRF 130
+++L+ TA+ I +YD + G +++ F
Sbjct: 217 -DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
>pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKM|B Chain B, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
pdb|1CKO|A Chain A, Structure Of Mrna Capping Enzyme In Complex With The Cap
Analog Gpppg
Length = 330
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD 189
N R + PV + D GYYN ++ C FA +Y+ SD
Sbjct: 260 NLRKNVPVGKLD--GYYNKGSIVECGFADGTWKYIQGRSD 297
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
Length = 330
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD 189
N R + PV + D GYYN ++ C FA +Y+ SD
Sbjct: 260 NLRKNVPVGKLD--GYYNKGSIVECGFADGTWKYIQGRSD 297
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
H V ++V P ++ AS DG VLL+D ++ L NS HA+ F+P R
Sbjct: 560 HTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSP--NRY 615
Query: 95 VATANSKDGIALYD 108
A ++ GI ++D
Sbjct: 616 WLCAATEHGIKIWD 629
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 38/173 (21%)
Query: 37 RPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVA 96
+ VY L D D S D + ++D + E L ++G + + + R++
Sbjct: 134 KGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVII 187
Query: 97 TANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNK------AGTQXXXXXXXXPP---- 146
T +S + ++D + + CE+ + +RFN + + P
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 247
Query: 147 ---VLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW 196
VL R++ V FD D+Y+VS S D + +W
Sbjct: 248 LRRVLVGHRAAVNVVDFD-------------------DKYIVSASGDRTIKVW 281
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 183 YVVSGSDDFVLYMWRVPR---DDIYVSSDIYVCRHGSLEVSILP 223
Y+++GSD V+ +W + ++Y SS Y C +++++P
Sbjct: 78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP 121
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 17/20 (85%)
Query: 182 EYVVSGSDDFVLYMWRVPRD 201
+Y+V+GS D L++W++P++
Sbjct: 218 KYIVTGSRDNTLHVWKLPKE 237
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 17/20 (85%)
Query: 182 EYVVSGSDDFVLYMWRVPRD 201
+Y+V+GS D L++W++P++
Sbjct: 218 KYIVTGSRDNTLHVWKLPKE 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,558,944
Number of Sequences: 62578
Number of extensions: 248639
Number of successful extensions: 866
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 88
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)