RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11351
(224 letters)
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 62.8 bits (153), Expect = 8e-12
Identities = 32/192 (16%), Positives = 75/192 (39%), Gaps = 22/192 (11%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN---SGPFHAVMFNPVE 91
H V ++ +++F S DD +++++DTR+ + + + + FNP
Sbjct: 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289
Query: 92 ARLVATANSKDG-IALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLG---------- 139
++AT S D +AL+D R K L + + ++++ +L
Sbjct: 290 EFILATG-SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348
Query: 140 ---LRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW 196
+ + P F H G+ + + + + S S+D ++ +W
Sbjct: 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK--ISDFSWNPNEPWIICSVSEDNIMQVW 406
Query: 197 RVPRDDIYVSSD 208
++ +++Y +
Sbjct: 407 QM-AENVYNDEE 417
Score = 61.7 bits (150), Expect = 2e-11
Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 32/182 (17%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA-------VMF 87
H++ YGLS +P+ + SA DD + L+D + + + F V +
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 239
Query: 88 NPVEARLVATANSKDG-IALYDTRKP---KEVLMQYGSCESCMSIRFNKAGTQLL----- 138
+ + L + + D + ++DTR K + FN +L
Sbjct: 240 HLLHESLFGSV-ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 139 --GLRRRLPPVLYNTRS-SSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY 194
+ L++ R+ + F+ H+ ++ + + S D L+
Sbjct: 299 DKTVA------LWDLRNLKLKLHSFESHKDEIF-----QVQWSPHNETILASSGTDRRLH 347
Query: 195 MW 196
+W
Sbjct: 348 VW 349
Score = 50.1 bits (120), Expect = 1e-07
Identities = 35/191 (18%), Positives = 57/191 (29%), Gaps = 41/191 (21%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH----------A 84
HE V P + A+ VL+FD E + P
Sbjct: 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 186
Query: 85 VMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQY-------GSCESCMSIRFNKAGTQ 136
+ +NP + +A S D I L+D + G + ++
Sbjct: 187 LSWNPNLNGYLLSA-SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 245
Query: 137 LLG-------LRRRLPPVLYNTRS---SSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVV 185
L G L +++TR+ S P D H N F + +
Sbjct: 246 LFGSVADDQKLM------IWDTRNNNTSKPSHTVDAHTAEVN-----CLSFNPYSEFILA 294
Query: 186 SGSDDFVLYMW 196
+GS D + +W
Sbjct: 295 TGSADKTVALW 305
Score = 43.2 bits (102), Expect = 3e-05
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 12 VIGNDDHVIS-HDMASGD-PID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDT-R 67
G+ D ++ D+ + + F H+ ++ + P + I AS+ D R+ ++D +
Sbjct: 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
Query: 68 SREEATELAVNSGPF-----HA--------VMFNPVEARLVATANSKDGI 104
EE + GP H +NP E ++ + S+D I
Sbjct: 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV-SEDNI 402
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 60.5 bits (147), Expect = 5e-11
Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 25/207 (12%)
Query: 12 VIGNDDHVIS-HDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE 70
G+ + + + LH+ V +P D + A++ D V L+D R+ +
Sbjct: 179 ATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK 238
Query: 71 EATELAVNSG---PFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVL------MQYG 120
+ P +A FNP ++ + T + I +Y + + +
Sbjct: 239 DKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT-DQRNEIRVYSSYDWSKPDQIIIHPHRQF 297
Query: 121 SCESCMSIRFNKAGTQLLGLRRRLPPV---------LYNTRSSSPVAQFDHEGYYNSCTM 171
+ + ++ ++ R + +Y+ S V Q +
Sbjct: 298 QHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIIS- 356
Query: 172 KSCCFAGTQDEYVVSGSDDFVLYMWRV 198
F+ T D + SG + +W
Sbjct: 357 -LNKFSPTGD-VLASGMGFNI-LIWNR 380
Score = 48.9 bits (117), Expect = 4e-07
Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 31/185 (16%)
Query: 23 DMASGDP---IDFYLHERPVYGLSVDPSQDAIFASACDDG--RVLLFDTRSREEATELAV 77
D + I + G+ + + G + F + +
Sbjct: 102 DYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS 161
Query: 78 NSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQ 136
+ V + +++AT G + L E+ + FN
Sbjct: 162 WDYWYCCVDVSV-SRQMLATG-DSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW 218
Query: 137 LLG-------LRRRLPPVLYNTRS----SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVV 185
L+ ++ L++ R+ +S +A+ HE N + F T ++
Sbjct: 219 LMATSSVDATVK------LWDLRNIKDKNSYIAEMPHEKPVN-----AAYFNPTDSTKLL 267
Query: 186 SGSDD 190
+
Sbjct: 268 TTDQR 272
Score = 45.4 bits (108), Expect = 5e-06
Identities = 23/181 (12%), Positives = 44/181 (24%), Gaps = 24/181 (13%)
Query: 22 HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN-- 78
+ S +R V L P+ A G ++L+D + + + +
Sbjct: 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGP 117
Query: 79 SGPFHAVMFNPVEARLVATANSKDG-IALYD--TRKPKEVLMQYGSCESCMSIRFNKAGT 135
+ FN + + S G L D + + + +
Sbjct: 118 GDAITGMKFNQFNTNQLFVS-SIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ 176
Query: 136 QLL------GLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD 189
L L L + H+ F D + + S
Sbjct: 177 MLATGDSTGRLL------LLGLDGHEIFKEKLHKAKVT-----HAEFNPRCDWLMATSSV 225
Query: 190 D 190
D
Sbjct: 226 D 226
Score = 30.0 bits (68), Expect = 0.53
Identities = 21/156 (13%), Positives = 46/156 (29%), Gaps = 30/156 (19%)
Query: 58 DGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYD--TRKPKE 114
+ +S + + ++ ++P VA SK G I L+D +
Sbjct: 52 LQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVG-SKGGDIILWDYDVQNKTS 110
Query: 115 VLMQYGSCESCMSIRFNKAGTQ------------LLGLRRRLPPVLYNTRSSSPVAQFDH 162
+ G ++ ++FN+ T L + V T S
Sbjct: 111 FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS--------W 162
Query: 163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV 198
+ +Y + + + +G L + +
Sbjct: 163 DYWYC-----CVDVS-VSRQMLATGDSTGRLLLLGL 192
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 55.2 bits (133), Expect = 4e-09
Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 30/198 (15%)
Query: 12 VIGNDDHVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR 69
++ + V+ D+ + + H + P D + A V L++ SR
Sbjct: 814 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSR 872
Query: 70 EEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSI 128
+ + + H VMF+P + TA S D I +++T+K + E +
Sbjct: 873 LKVADCRGHLSWVHGVMFSP-DGSSFLTA-SDDQTIRVWETKKVCKNSAIVLKQEI--DV 928
Query: 129 RFNKAGTQLL------GLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQD- 181
F + T +L GL+ L ++ E + CC +
Sbjct: 929 VFQENETMVLAVDNIRGLQ------LIAGKTGQIDYL--PEA-----QVSCCCL--SPHL 973
Query: 182 EYVVSGSDDFVLYMWRVP 199
EYV G +D + + +P
Sbjct: 974 EYVAFGDEDGAIKIIELP 991
Score = 48.3 bits (115), Expect = 7e-07
Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 33/193 (17%)
Query: 23 DMASGDPI-DFYLHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSG 80
++ +G DF H+ V S S D F+S D ++ EL ++G
Sbjct: 1071 NVITGRIERDFTCHQGTVL--SCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1128
Query: 81 PFHAVMFNPVEARLVATA---------NSKDGIALYDTRKPKEVLMQYGSCESCMSIRFN 131
F+ + L+AT N DG L+ + F+
Sbjct: 1129 CVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS 1187
Query: 132 KAGTQLLG----LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQD-EYVV 185
L+ L+ +N + F + +K + D V
Sbjct: 1188 PDSKTLVSAGGYLK------WWNVATGDSSQTFYTNGTN-----LKKIHV--SPDFRTYV 1234
Query: 186 SGSDDFVLYMWRV 198
+ + +LY+ +V
Sbjct: 1235 TVDNLGILYILQV 1247
Score = 47.9 bits (114), Expect = 1e-06
Identities = 33/205 (16%), Positives = 68/205 (33%), Gaps = 36/205 (17%)
Query: 2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRV 61
+ D I+ L++I +G YL E V + P A +DG +
Sbjct: 938 LAVDNIRGLQLI---------AGKTGQID--YLPEAQVSCCCLSP-HLEYVAFGDEDGAI 985
Query: 62 LLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYG 120
+ + + + + + F + + + ++ S+D I +++ + V +Q
Sbjct: 986 KIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISS-SEDSVIQVWNWQTGDYVFLQ-A 1042
Query: 121 SCESCMSIRFNKAGTQLLG-----LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSC 174
E+ R + L ++ ++N + F H+G SC
Sbjct: 1043 HQETVKDFRLLQDSRLLSWSFDGTVK------VWNVITGRIERDFTCHQGTVL-----SC 1091
Query: 175 CFAGTQD-EYVVSGSDDFVLYMWRV 198
+ D S S D +W
Sbjct: 1092 AI--SSDATKFSSTSADKTAKIWSF 1114
Score = 47.1 bits (112), Expect = 2e-06
Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 14 GNDDHVIS-HDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA 72
++D VI + +GD + H+ V QD+ S DG V +++ +
Sbjct: 1021 SSEDSVIQVWNWQTGDYVFLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078
Query: 73 TELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEV 115
+ + G + + +A ++ S D ++ +
Sbjct: 1079 RDFTCHQGTVLSCAISS-DATKFSST-SADKTAKIWSFDLLSPL 1120
Score = 46.4 bits (110), Expect = 3e-06
Identities = 37/176 (21%), Positives = 57/176 (32%), Gaps = 29/176 (16%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
H VY SQD AS D + +F + E+ ++ + F+ +
Sbjct: 614 HTDAVY--HACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDS 670
Query: 94 LVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLG--------LRRRL 144
+AT S D + ++D+ K V E F LL L+
Sbjct: 671 YIATC-SADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK--- 726
Query: 145 PPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQD-EYVVSGSDDFVLYMWRV 198
L++ H N C F + D E + S S D L +W V
Sbjct: 727 ---LWDLNQKECRNTMFGHTNSVN-----HCRF--SPDDELLASCSADGTLRLWDV 772
Score = 40.2 bits (94), Expect = 4e-04
Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 39/199 (19%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS-- 79
D+ + + + H V P D + AS DG + L+D RS E + V
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 80 -----------GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVL-MQYGSCESCMS 127
++ + + A +K+ + L+D + + G +
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSA-DGDKIIVA-AKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845
Query: 128 IRFNKAGTQLLG------LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQ 180
F+ + + L+N S VA H + F +
Sbjct: 846 CDFSPYDHLAVIALSQYCVE------LWNIDSRLKVADCRGHLS-----WVHGVMF--SP 892
Query: 181 D-EYVVSGSDDFVLYMWRV 198
D ++ SDD + +W
Sbjct: 893 DGSSFLTASDDQTIRVWET 911
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 51.8 bits (124), Expect = 4e-08
Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 8/198 (4%)
Query: 20 ISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS 79
+ D + ++ P+ + + D G +L D L N
Sbjct: 40 FDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNE 99
Query: 80 GPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKA----- 133
+ A S DG I + D R + ++ + S + NK
Sbjct: 100 ANLGICRICKYGDDKLIAA-SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158
Query: 134 -GTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFV 192
++L+ + E Q+ Y S D V
Sbjct: 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218
Query: 193 LYMWRVPRDDIYVSSDIY 210
+ + D Y SS +
Sbjct: 219 AVEFFDDQGDDYNSSKRF 236
Score = 27.1 bits (60), Expect = 5.6
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 52 FASACDDGRVLLFDTRSREEATELA-VNSGPFHAVMFNPVEARLVATANSKDGIALYDTR 110
+A DG + ++ ++R++ A N + + ++ A S DT
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD---NILCLATS------DDTF 316
Query: 111 K 111
K
Sbjct: 317 K 317
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 50.0 bits (120), Expect = 1e-07
Identities = 32/235 (13%), Positives = 78/235 (33%), Gaps = 49/235 (20%)
Query: 2 ASGDPIKVLRVIGNDDHV----ISHD---MASG--------------DPIDFYL-----H 35
+ D K + + D SH+ +A + + H
Sbjct: 53 LAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH 112
Query: 36 ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH---------AVM 86
V + + QD + AS ++G + ++D E+ P ++
Sbjct: 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172
Query: 87 FNPVEARLVATANSKDG-IALYDTRKPKEVL------MQYGSCESCMSIRFNKAGTQLLG 139
+N A + A+A +++D + KEV+ G + + ++ + +
Sbjct: 173 WNQSLAHVFASA-GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231
Query: 140 L---RRRLPPV-LYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD 190
P + +++ R+++ Q ++G+ S + + ++S D
Sbjct: 232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL--SLDWCHQDEHLLLSSGRD 284
Score = 48.5 bits (116), Expect = 5e-07
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
H++ + L + + S+ D VLL++ S E+ ++ F P L
Sbjct: 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320
Query: 95 VATANSKDG-IALYD 108
A A S D I +
Sbjct: 321 FACA-SFDNKIEVQT 334
Score = 38.1 bits (89), Expect = 0.001
Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 50/166 (30%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV--NSGPFHAVMFNPVEA 92
H++ +S S + A+ D + L+ + + +A F+ + ++
Sbjct: 22 HDKIPLLVSGTVSG-TVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH-NN 79
Query: 93 RLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT 151
+++A A +G + LY T +
Sbjct: 80 KIIAGA-LDNGSLELYSTNEANN------------------------------------- 101
Query: 152 RSSSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW 196
+ + +A+F H +K+ F QD + SG ++ +++W
Sbjct: 102 -AINSMARFSNHSSS-----VKTVKFNAKQDNVLASGGNNGEIFIW 141
Score = 26.5 bits (59), Expect = 7.0
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 14 GNDDHVISHDMASGDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA 72
G D+ V+ + S + + F + P +FA A D ++ + ++
Sbjct: 282 GRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341
Query: 73 ---TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK 113
E +N V+ SK+ +++ + P
Sbjct: 342 LDEQETETKQQESETDFWNN-----VSREESKEKPSVFHLQAPT 380
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 48.2 bits (114), Expect = 6e-07
Identities = 15/143 (10%), Positives = 40/143 (27%), Gaps = 11/143 (7%)
Query: 5 DPIKVLRVIGNDDHVIS-HDMASGDPIDFYLHERPVYGLSVDPSQD-AIFASACDDGRVL 62
+ + ++ I + + V S +D + A DG +
Sbjct: 136 EVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195
Query: 63 LFDTRSREEATELAV--NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK-----EV 115
+++ S ++A+ V F + + + +D RK
Sbjct: 196 VYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVECDQT-VVCFDLRKDVGTLAYPT 253
Query: 116 LMQYGSCESCMSIRFNKAGTQLL 138
++ + +G ++
Sbjct: 254 YTIPEFKTGTVTYDIDDSGKNMI 276
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 47.8 bits (114), Expect = 1e-06
Identities = 27/189 (14%), Positives = 62/189 (32%), Gaps = 27/189 (14%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
+ + + + E PV ++ DD R+ +F+ + E+ + +
Sbjct: 41 NYETQVEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY 99
Query: 82 FHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLG 139
++ +P V + S D + L++ + + G M + FN
Sbjct: 100 IRSIAVHP-TKPYVLSG-SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157
Query: 140 -------LRRRLPPVLYNTRSSSPVAQFD--HEGYYNSCTMKSCCFAGTQD-EYVVSGSD 189
++ +++ S+P E N + D Y+++ SD
Sbjct: 158 SGCLDRTVK------VWSLGQSTPNFTLTTGQERGVN-----YVDYYPLPDKPYMITASD 206
Query: 190 DFVLYMWRV 198
D + +W
Sbjct: 207 DLTIKIWDY 215
Score = 32.7 bits (75), Expect = 0.096
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 8/121 (6%)
Query: 23 DMASGDPIDFYL---HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVN 78
+ P F L ER V + P D +A DD + ++D +++ L +
Sbjct: 169 SLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 79 SGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQL 137
+F+P ++ + S+DG + ++++ K E I + G +
Sbjct: 228 MSNVSFAVFHP-TLPIIISG-SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285
Query: 138 L 138
Sbjct: 286 Y 286
Score = 32.4 bits (74), Expect = 0.13
Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
D + + H V P+ I S +DG + ++++ + + L V
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPII-ISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 82 FHAVMFNPVEARLVATANSKDGIALYDT 109
+ +P + + +G +
Sbjct: 273 SWCIATHPTGRKNYIASGFDNGFTVLSL 300
Score = 31.6 bits (72), Expect = 0.21
Identities = 30/163 (18%), Positives = 50/163 (30%), Gaps = 51/163 (31%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
V G+ P++ + + GRV +++ ++ E + V P A F
Sbjct: 12 RSDRVKGIDFHPTEPWV-LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNW 69
Query: 95 VATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS 154
+ S D IR ++N +
Sbjct: 70 IIVG-SDD-----------------------FRIR------------------VFNYNTG 87
Query: 155 SPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW 196
V F+ H Y S T+ YV+SGSDD + +W
Sbjct: 88 EKVVDFEAHPDYIR-----SIAVHPTK-PYVLSGSDDLTVKLW 124
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 47.6 bits (112), Expect = 1e-06
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 13/115 (11%)
Query: 12 VIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE 71
VI D V + S + + + D S D + +G ++++D +
Sbjct: 74 VINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWML-IGLQNGSMIVYDIDRDQL 132
Query: 72 AT-----------ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
++ A P ++ +NP + V + Y + +
Sbjct: 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE-YVTLTYSLVENEIK 186
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 45.9 bits (109), Expect = 3e-06
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
D+ S + P G + P ++ + V + DT + + S P
Sbjct: 18 DVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP 76
Query: 82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
V +P ++ T + +++ DT
Sbjct: 77 -QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA 109
Score = 45.5 bits (108), Expect = 5e-06
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 12 VIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR 69
V + +S D A+ + I P G++V P ++ + + + DT S
Sbjct: 48 VANAHSNDVSIIDTATNNVIATVPAGSSP-QGVAVSPDGKQVYVTNMASSTLSVIDTTSN 106
Query: 70 EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
A + P + +P +L T N +++ +T +
Sbjct: 107 TVAGTVKTGKSP-LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151
Score = 43.6 bits (103), Expect = 2e-05
Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 4/126 (3%)
Query: 15 NDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE 74
D V + + I+ R G++V P ++ + D + + DT +
Sbjct: 136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT 195
Query: 75 LAVNSGPFHAVMFNPVEARL-VATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNK 132
+ V + P + NP + V + +++ DT K + + I
Sbjct: 196 VKVEAAP-SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITARIPVGPDPAGIAVTP 253
Query: 133 AGTQLL 138
G ++
Sbjct: 254 DGKKVY 259
Score = 41.7 bits (98), Expect = 8e-05
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 15 NDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACD--DGRVLLFDTRSREEA 72
+ + D + ID E G++V+P + + D V + DT + +
Sbjct: 178 DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237
Query: 73 TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
+ V P + P ++ + + +++ DT
Sbjct: 238 ARIPVGPDP-AGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279
Score = 40.1 bits (94), Expect = 3e-04
Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 2/105 (1%)
Query: 12 VIGNDDHVISH-DMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE 70
V +S D S + GL++ P ++ + D V + +T ++
Sbjct: 90 VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA 149
Query: 71 EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
++V P + P ++ I++ DT +
Sbjct: 150 VINTVSVGRSPKG-IAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193
Score = 35.9 bits (83), Expect = 0.006
Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 51 IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTR 110
+ + + + + D S + + V S P + +P ++ + +++ DT
Sbjct: 4 AYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTA 62
Query: 111 KPKEV 115
+
Sbjct: 63 TNNVI 67
Score = 32.1 bits (73), Expect = 0.14
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 1/96 (1%)
Query: 14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
+ V D + G++V P ++ + V + DT +
Sbjct: 221 KYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA 280
Query: 74 ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDT 109
+AV P +A + S D + +
Sbjct: 281 TMAVGKNP-YASGQFIGSIPVQPVYPSADFKSNITS 315
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 45.8 bits (109), Expect = 4e-06
Identities = 33/221 (14%), Positives = 77/221 (34%), Gaps = 38/221 (17%)
Query: 2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYL-----HERPVYGLSVDPSQDAIFASAC 56
+ + ++ + + +D + H PV ++ P D + AS
Sbjct: 42 VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS 101
Query: 57 DDGRVLLFDTRS-------REEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYD 108
+D V++++ RE L ++ V ++P ++ +A D I ++D
Sbjct: 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA-GCDNVILVWD 160
Query: 109 --TRKPKEVLMQYGSCESCMSIRFNKAGTQLLG------LRRRLPPVLYNTRSSSPVAQF 160
T L ++ S+ +++ G + +R + R + VA+
Sbjct: 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR------VIEPRKGTVVAEK 214
Query: 161 D--HEGYYNSCTMKSCCFAGTQDEYVVSG---SDDFVLYMW 196
D HEG + + + + +G + + +W
Sbjct: 215 DRPHEGTRPVHAVFVS-----EGKILTTGFSRMSERQVALW 250
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 46.1 bits (110), Expect = 4e-06
Identities = 26/190 (13%), Positives = 59/190 (31%), Gaps = 23/190 (12%)
Query: 23 DMASGDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV---N 78
SG+ + + H + + + S+ + DDG V+ + + +
Sbjct: 146 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 205
Query: 79 SGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKA---G 134
V F+P V T D I+ +D + + + E F +
Sbjct: 206 GSFVRDVEFSPDSGEFVITV-GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 264
Query: 135 TQLL-G-----LRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
+ +R +++ +S V ++ + G + ++S S
Sbjct: 265 QKFATVGADATIR------VWDVTTSKCVQKWTLDKQQLGNQQVGVVATG--NGRIISLS 316
Query: 189 DDFVLYMWRV 198
D L + +
Sbjct: 317 LDGTLNFYEL 326
Score = 43.8 bits (104), Expect = 2e-05
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 15/127 (11%)
Query: 2 ASGDPIKVLRVIGNDDHVIS-HDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR 60
S + + V GN V D+ + +S+ PS + A+ G+
Sbjct: 454 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDL-KTPLRAKPSYISISPS-ETYIAAGDVMGK 511
Query: 61 VLLFDTRSREE-ATELAVNSGPFHAVMFNP---------VEARLVATANSKDG-IALYDT 109
+LL+D +SRE + A + +A+ + P +E LVAT S D I +Y
Sbjct: 512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG-SLDTNIFIYSV 570
Query: 110 RKPKEVL 116
++P +++
Sbjct: 571 KRPMKII 577
Score = 40.3 bits (95), Expect = 3e-04
Identities = 24/175 (13%), Positives = 51/175 (29%), Gaps = 19/175 (10%)
Query: 35 HERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
P+ +S D + D + S E++ +S +A
Sbjct: 115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 174
Query: 94 LVATANSKDG-IALYD--TRKPKEVLMQY-GSCESCMSIRFNKAGTQLL---GLRRRLPP 146
T DG + Y K + + F+ + + G R++
Sbjct: 175 RSMTV-GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI-- 231
Query: 147 VLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFA-GTQD-EYVVSGSDDFVLYMWRV 198
++ +S + D + ++ FA D + + D + +W V
Sbjct: 232 SCFDGKSGEFLKYIEDDQEP-----VQGGIFALSWLDSQKFATVGADATIRVWDV 281
Score = 38.8 bits (91), Expect = 8e-04
Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 23 DMASGDPI---DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS 79
D+ + + + + V + + S DG + ++ E ++ ++
Sbjct: 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHN 339
Query: 80 GPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKE 114
A+ NP + + S DG I + + +
Sbjct: 340 KGITALTVNP-----LISG-SYDGRIMEWSSSSMHQ 369
Score = 34.9 bits (81), Expect = 0.015
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 14/82 (17%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
++ + + H + + L+V+P S DGR++ + + S + + S
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVS-- 377
Query: 82 FHAVMFNPVEARLVATANSKDG 103
+ + A+ ++ S D
Sbjct: 378 ---LDNSK--AQEYSSI-SWDD 393
Score = 34.5 bits (80), Expect = 0.026
Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 12/104 (11%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
H + S+D S+ ++S D + + E ++ V +
Sbjct: 371 HSNLIV--SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQP--------KVASANNDGFT 420
Query: 95 VATANSKDGIALYDTRKPKEVL-MQYGSCESCMSIRFNKAGTQL 137
+ D + + + + ++ S S +S+ N L
Sbjct: 421 AVLT-NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 463
Score = 34.1 bits (79), Expect = 0.034
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 7/115 (6%)
Query: 23 DMASGDPID-FYLHERPVYGL--SVDPSQDAIFASACDDGRVLLFDTRSREEATELAV-- 77
D SG+ + + PV G ++ FA+ D + ++D + + + +
Sbjct: 235 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK 294
Query: 78 NSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFN 131
V + + S DG + Y+ + + G + ++ N
Sbjct: 295 QQLGNQQVGVVATGNGRIISL-SLDGTLNFYELGHDEVLKTISGHNKGITALTVN 348
Score = 27.6 bits (62), Expect = 3.6
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 15/107 (14%)
Query: 12 VIGNDDHVISH--DMASGDPID---FYLHER-PVYGLSVDPSQD-AIFASACDDGRVLLF 64
D F H V + P + S + G+V+++
Sbjct: 34 AYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93
Query: 65 DTRSREEAT--------ELAVNSGPFHAVMFNPVEARLVATANSKDG 103
+E+ E V +GP + ++ RL +D
Sbjct: 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 140
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 45.1 bits (106), Expect = 7e-06
Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 38/193 (19%)
Query: 40 YGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATEL-----AVNSGPFH---AVMFNPV 90
+ S+ + D + SA DD R+ L+ + + + A A F+P
Sbjct: 179 HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPN 237
Query: 91 EARLVATANSKDGIALYDTRK----------------PKEVLMQYGSCESCMSIRFNKAG 134
++SK I L D R P S ++F+ +G
Sbjct: 238 SCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG 297
Query: 135 TQL---------LGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSC--TMKSCCFAGTQDEY 183
+ + + + + Y N C CC+ G+ D
Sbjct: 298 RYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGS-DSV 356
Query: 184 VVSGSDDFVLYMW 196
V++GS + M+
Sbjct: 357 VMTGSYNNFFRMF 369
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 44.9 bits (105), Expect = 9e-06
Identities = 28/206 (13%), Positives = 56/206 (27%), Gaps = 15/206 (7%)
Query: 2 ASGD-PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR 60
S + I L +I N V M + L + + D +G
Sbjct: 231 VSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD--SLITTFDFLSPTTVVCGFKNGF 288
Query: 61 VLLFDTRSREEAT-ELAVNSGPFHAVMF--NPVEARLVATANSKDGIALYDTRKPKEVLM 117
V FD E + V+ +V + E +V+T +++ +
Sbjct: 289 VAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT 348
Query: 118 QYG--SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSC 174
+ + + + + +R++ V E +
Sbjct: 349 TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIG---- 404
Query: 175 CFAGTQDEYVVSGSDDFVLYMWRVPR 200
V++GS D L + R
Sbjct: 405 --VSRLHPMVLAGSADGSLIITNAAR 428
Score = 32.5 bits (73), Expect = 0.10
Identities = 13/166 (7%), Positives = 40/166 (24%), Gaps = 15/166 (9%)
Query: 45 DPSQDAIFASACDDGRVLLFD-TRSREEATELAVNSGPFHAVMFNPVEARLVATAN---- 99
P + +G + + + + + P + +
Sbjct: 221 APHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV 280
Query: 100 ---SKDG-IALYDTRKPKEVLMQY----GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT 151
K+G +A +D P+ S + + T + + ++N
Sbjct: 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340
Query: 152 RSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR 197
+ + ++ + Y+ S + +
Sbjct: 341 KDIATTKTTVSRFRGSNLV--PVVYCPQIYSYIYSDGASSLRAVPS 384
Score = 29.8 bits (66), Expect = 0.84
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRV 61
D LR + + H + S E + + V + + DG +
Sbjct: 371 IYSDGASSLRAVPSRAAFAVHPLVS--------RETTITAIGVSRLHPMV-LAGSADGSL 421
Query: 62 LLFDTRSR 69
++ + R
Sbjct: 422 IITNAARR 429
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 44.0 bits (104), Expect = 2e-05
Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 23/191 (12%)
Query: 26 SGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA------------- 72
Y V +++ P+ D FA + DG++++ ++
Sbjct: 101 VYSSSLTYDCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159
Query: 73 ---TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV--LMQYGSCESCMS 127
N F E L+ + + ++D R + + + + S
Sbjct: 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSS 219
Query: 128 IRFNKAGTQLL--GLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVV 185
I ++ L+ R + +++ R + + + + ++ C F G VV
Sbjct: 220 ICIDEECCVLILGTTRGII--DIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277
Query: 186 SGSDDFVLYMW 196
GS L +W
Sbjct: 278 GGSSKTFLTIW 288
Score = 40.5 bits (95), Expect = 2e-04
Identities = 21/183 (11%), Positives = 53/183 (28%), Gaps = 30/183 (16%)
Query: 23 DMASGDPI---DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE-ATELAVN 78
D+ + + + + V + +D + G + ++D R + +
Sbjct: 198 DIRTLERLQIIENSPRHGAVSSICIDEECCVL-ILGTTRGIIDIWDIRFNVLIRSWSFGD 256
Query: 79 SGPFHAVMFNPVEAR---LVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGT 135
P V + +V +SK + +++ K S E F
Sbjct: 257 HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK 316
Query: 136 QLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYM 195
L L RS + ++ + + D+ +++ + M
Sbjct: 317 GLEELN------FCGIRSLNALS----------------TISVSNDKILLTDEATSSIVM 354
Query: 196 WRV 198
+ +
Sbjct: 355 FSL 357
Score = 35.9 bits (83), Expect = 0.007
Identities = 22/217 (10%), Positives = 53/217 (24%), Gaps = 40/217 (18%)
Query: 12 VIGNDDHVIS-HDMASGDPIDFYL--HERPVYGLSVDPS---QDAIFASACDDGRVLLFD 65
++G +I D+ I + P+ + V I + +++
Sbjct: 230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289
Query: 66 TRSREEATELAVNSGPFHAVMFNPVEARL-------------VATANSKDG--------- 103
+ F P+E L ++T + +
Sbjct: 290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEAT 349
Query: 104 --IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD 161
I ++ + + L L R S+ V
Sbjct: 350 SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLR-----KMKRTSTHSVDDSL 404
Query: 162 -HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR 197
H NS + +V+ + ++ +++
Sbjct: 405 YHHDIINSI----STCEVDETPLLVACDNSGLIGIFQ 437
Score = 32.8 bits (75), Expect = 0.071
Identities = 17/167 (10%), Positives = 44/167 (26%), Gaps = 36/167 (21%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-----EATELAVNSGPFHAVMFNP 89
+ +V P + + D G + +++ + ++ S + P
Sbjct: 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP 121
Query: 90 VEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLY 149
A + SKDG I K ++
Sbjct: 122 -NFDAFAVS-SKDG-----------------------QIIVLKVNHY----QQESEVKFL 152
Query: 150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW 196
N + + N ++ F + +V+ ++ + ++
Sbjct: 153 NCECIRKINLKNFGK--NEYAVRMRAFVNEEKSLLVALTNLSRVIIF 197
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 43.8 bits (104), Expect = 2e-05
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 23 DMASGDPIDFYLHERPVYGL--SVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG 80
D + D + E VY S ++ + A +V L D +S + L +
Sbjct: 128 DTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ 187
Query: 81 PFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLM 117
AV ++P ++ATA S D + L+D R+ L+
Sbjct: 188 EILAVSWSPRYDYILATA-SADSRVKLWDVRRASGCLI 224
Score = 38.0 bits (89), Expect = 0.002
Identities = 23/212 (10%), Positives = 56/212 (26%), Gaps = 68/212 (32%)
Query: 2 ASGDPIKVLRVIGNDDHVIS-HDMASGDPIDFYL-HERPVYGLSVDPSQDAIFASACDDG 59
DP++ + + + D H + L ++P + S DG
Sbjct: 11 GLEDPLR----LRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDG 66
Query: 60 RVLLFDTRSREEATELAVNSGPF--------H-----AVMFNPVEARLVATANSKDGIAL 106
++L+D + + + H V + P + + ++ S D
Sbjct: 67 VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS-SFDK--- 122
Query: 107 YDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYY 166
+++ +++T + F+ E
Sbjct: 123 --------------------TLK------------------VWDTNTLQTADVFNFEETV 144
Query: 167 NSCTMKSCCFA--GTQDEYVVSGSDDFVLYMW 196
S + T+ V G+ + +
Sbjct: 145 YSH-----HMSPVSTKHCLVAVGTRGPKVQLC 171
Score = 29.5 bits (67), Expect = 0.88
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 13/88 (14%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL----AVNSGPFHAVMFNPV 90
H V + P +F S+ D + ++DT + + A V S +PV
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYS-----HHMSPV 152
Query: 91 --EARLVATANSKDG-IALYDTRKPKEV 115
+ LVA ++ + L D +
Sbjct: 153 STKHCLVAVG-TRGPKVQLCDLKSGSCS 179
Score = 29.1 bits (66), Expect = 1.2
Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 52/168 (30%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
H V GL D + D R+ L+++ + E VN G ++
Sbjct: 244 HNGKVNGLCFTS--DGLHLLTVGTDNRMRLWNSSNGE---NTLVNYGKVCNNSKKGLKF- 297
Query: 94 LVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS 153
V+ S + + + S +I +Y S
Sbjct: 298 TVSCGCSSEFV--------------FVPYGS--TIA------------------VYTVYS 323
Query: 154 SSPVAQFD-HEGYYNSCTMKSCCFA--GTQDEYVVSGSDDFVLYMWRV 198
+ H + C F + SGS D + W
Sbjct: 324 GEQITMLKGHYKTVD-----CCVFQSNFQ---ELYSGSRDCNILAWVP 363
Score = 28.4 bits (64), Expect = 2.3
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 42 LSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSK 101
+S S + F + ++ S E+ T L + +F + + + S+
Sbjct: 299 VSCGCSSE--FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSG-SR 354
Query: 102 DG-IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLL 138
D I + + V E+ + N A
Sbjct: 355 DCNILAWVPSLYEPVP---DDDETTTKSQLNPAFEDAW 389
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 41.4 bits (98), Expect = 9e-05
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVN---------SGPFHA 84
H R +Y + Q A+AC D + +F + + + S +
Sbjct: 251 HSRTIY--DIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNC 308
Query: 85 VMFNPVEARLVATANSKDG-IALYDTRKPKEV 115
V +NP E L+A+ S DG +A + ++P+ +
Sbjct: 309 VAWNPKEPGLLASC-SDDGEVAFWKYQRPEGL 339
Score = 28.3 bits (64), Expect = 2.2
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 13/82 (15%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFH-----AVMFN 88
+ + + + + AS D R+ ++ T + ++ G H V ++
Sbjct: 15 PDSRCW--FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG--HQRTVRKVAWS 70
Query: 89 PVEARLVATANSKDG-IALYDT 109
P +A+A S D ++
Sbjct: 71 P-CGNYLASA-SFDATTCIWKK 90
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 41.3 bits (98), Expect = 1e-04
Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 24/187 (12%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
D++SG + H V+ + +P + I S D V ++D ++ + L +S P
Sbjct: 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 82 FHAVMFNPVEARLVATANSKDG-IALYD--TRKPKEVLMQYGSCESCMSIRFNKAGTQLL 138
AV FN + L+ ++ S DG ++D + + + L+ ++F+ G +L
Sbjct: 152 VSAVHFNR-DGSLIVSS-SYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYIL 208
Query: 139 -G-----LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDF 191
L+ L++ + + H+ F+ T +++VSGS+D
Sbjct: 209 AATLDNTLK------LWDYSKGKCLKTYTGHKNEKYCI---FANFSVTGGKWIVSGSEDN 259
Query: 192 VLYMWRV 198
++Y+W +
Sbjct: 260 LVYIWNL 266
Score = 30.1 bits (69), Expect = 0.51
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 23 DMASGDPIDFYL-HERPVYGLSVDPSQD--AIFASACDDGRVLLFDTRSREEATELAVNS 79
D + G + Y H+ Y + + S S +D V +++ +++E +L ++
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Query: 80 GPFHAVMFNPVEARLVATANSKDG-IALYDT 109
+ +P E + + A D I L+ +
Sbjct: 280 DVVISTACHPTENIIASAALENDKTIKLWKS 310
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 41.4 bits (98), Expect = 1e-04
Identities = 14/114 (12%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 12 VIGNDDHVIS-HDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS 68
+G D + + ++ + H + ++ + A + +V+ + +
Sbjct: 464 AVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-GAFLVATDQSRKVIPYSVAN 522
Query: 69 REEATE---LAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQ 118
E ++ V ++P + +AT S D + +++ KP + +
Sbjct: 523 NFELAHTNSWTFHTAKVACVSWSP-DNVRLATG-SLDNSVIVWNMNKPSDHPII 574
Score = 37.2 bits (87), Expect = 0.003
Identities = 30/203 (14%), Positives = 71/203 (34%), Gaps = 33/203 (16%)
Query: 14 GNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE 71
G+DD+ ++ + F H + V+ + +P ++FAS DG ++L++ +
Sbjct: 166 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTK 224
Query: 72 ATELAVNSGPF--H-----AVMFNPVEARLVATANSKDG-IALYDTRKPKEVL-MQYGSC 122
+S H + ++P + +A+A S D I +++ K + G+
Sbjct: 225 TGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASA-SADKTIKIWNVATLKVEKTIPVGTR 282
Query: 123 ESCMSIRFNKAGTQLL------GLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCF 176
+ L+ + N S G+ + + +
Sbjct: 283 IEDQQLGIIWTKQALVSISANGFIN------FVNPELGSIDQVR--YGHNKA--ITALSS 332
Query: 177 AGTQD-EYVVSGSDDFVLYMWRV 198
+ D + + S + + W +
Sbjct: 333 --SADGKTLFSADAEGHINSWDI 353
Score = 35.6 bits (83), Expect = 0.009
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 17/118 (14%)
Query: 2 ASGDPIKVLRVIGNDDHVISHDMASGDPI-DFYLHERPVYGLSVDPSQD--AIFASACDD 58
+ V +G + R + SVD S DD
Sbjct: 121 VGEGRERFGHVF---------LFDTGTSNGNLTGQARAMN--SVDFKPSRPFRIISGSDD 169
Query: 59 GRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEV 115
V +F+ + + ++ H+V +NP + L A+ DG I LY+ +
Sbjct: 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFAST-GGDGTIVLYNGVDGTKT 225
Score = 35.2 bits (82), Expect = 0.014
Identities = 17/188 (9%), Positives = 50/188 (26%), Gaps = 32/188 (17%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN-SG 80
+ G Y H + + LS + SA +G + +D + +
Sbjct: 310 NPELGSIDQVRYGHNKAITALSSSADGKTL-FSADAEGHINSWDISTGISNRVFPDVHAT 368
Query: 81 PFHAVMFNPVEARLVATANSKDGIALYD---TRKPKEVLMQYGSCESCMSIRFNKAGTQL 137
+ + L + D + + + + + + + G
Sbjct: 369 MITGIKTTS-KGDLFTVS-WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 426
Query: 138 LG-----LRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA--GTQDEYVVSGSDD 190
+ + +Y+ + V + + +V G D
Sbjct: 427 VAACYKHIA------IYSHGKLTEVP-ISYNSS-------CVALSNDKQ---FVAVGGQD 469
Query: 191 FVLYMWRV 198
++++++
Sbjct: 470 SKVHVYKL 477
Score = 33.3 bits (77), Expect = 0.057
Identities = 29/200 (14%), Positives = 60/200 (30%), Gaps = 34/200 (17%)
Query: 14 GNDDHVISHDMASGDPIDFYL----HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR 69
DDH+ GL+V D A A + ++ +
Sbjct: 385 SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA--DGDIAVAACYKHIAIYSH-GK 441
Query: 70 EEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYD--TRKPKEVLMQYGSCESCM 126
+ S V + + + VA +D + +Y EV
Sbjct: 442 LTEVPI---SYNSSCVALSN-DKQFVAVG-GQDSKVHVYKLSGASVSEVKTI-VHPAEIT 495
Query: 127 SIRFNKAGTQLL--GLRRRLPPVLYNTRSSSPVAQFD----HEGYYNSCTMKSCCFA--G 178
S+ F+ G L+ R++ + Y+ ++ +A + H ++
Sbjct: 496 SVAFSNNGAFLVATDQSRKV--IPYSVANNFELAHTNSWTFHTAKVACV-----SWSPDN 548
Query: 179 TQDEYVVSGSDDFVLYMWRV 198
+ +GS D + +W +
Sbjct: 549 V---RLATGSLDNSVIVWNM 565
Score = 32.2 bits (74), Expect = 0.14
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 8/94 (8%)
Query: 14 GNDDHVIS-HDMASGDPIDFYLHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREE 71
G + + + + + H S AS G V ++DT
Sbjct: 38 GTSVYTVPVGSLTDTEI--YTEHSHQTT--VAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93
Query: 72 A--TELAVNSGPFHAVMFNPVEARLVATANSKDG 103
T + V SGP + ++ R+ A ++
Sbjct: 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 127
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 41.3 bits (97), Expect = 1e-04
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 39 VYGLSVDPSQDAIFASACD------DGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEA 92
Y ++ ++A++ + G V D + E + + PF N
Sbjct: 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFG-ATINNTTQ 101
Query: 93 RLVATANSKDGIALYDTRKPKEV 115
L + D + +
Sbjct: 102 TLWFGNTVNSAVTAIDAKTGEVK 124
Score = 40.1 bits (94), Expect = 2e-04
Identities = 11/93 (11%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 23 DMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF 82
D +G+ + + +P+++ + + G+V + D +S + + P
Sbjct: 259 DTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHP- 316
Query: 83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
+++ + L + K T+ +
Sbjct: 317 NSLALSADGKTLYVSVKQKSTKQQEATQPDDVI 349
Score = 39.4 bits (92), Expect = 4e-04
Identities = 12/125 (9%), Positives = 40/125 (32%), Gaps = 10/125 (8%)
Query: 23 DMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF 82
D + + ++ +G +++ + ++ + V D ++ E L ++
Sbjct: 75 DPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR 134
Query: 83 ---------HAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNK 132
++ + + + K+ I + D K + + + +
Sbjct: 135 TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS 194
Query: 133 AGTQL 137
G +L
Sbjct: 195 EGKRL 199
Score = 39.0 bits (91), Expect = 7e-04
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 41 GLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANS 100
+S+D ++ F + VL+ DTR+ ++A AV+FNP T
Sbjct: 235 NISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQ 292
Query: 101 KDGIALYDTRKPKEV 115
+++ D + K V
Sbjct: 293 AGKVSVIDAKSYKVV 307
Score = 26.3 bits (58), Expect = 9.3
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 61 VLLFDTRSREEATELAVNSGPFHAVMFNPVEARL-VATANSKDG-----IALYDTRKPKE 114
V F T++ EE AV G + + ++ E L +AT+ S+ + D +
Sbjct: 23 VSSFSTQAAEEMLRKAVGKGA-YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV 81
Query: 115 V 115
Sbjct: 82 T 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 2e-04
Identities = 37/212 (17%), Positives = 57/212 (26%), Gaps = 78/212 (36%)
Query: 2 ASGDPIKVLRVI----------GNDDHVISHDMASGDP---------IDFYLHERPVYGL 42
G +VL + GND H ++ + + I Y+ R +
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 43 SVD-PSQDAIFASACDDGRVLLFDTRSREEATELAV-----NSGPFHAVMFNPVEARLVA 96
D S A+F + +G L A+ N+ + F E R
Sbjct: 136 PFDKKSNSALFRAV-GEGNAQLV-----------AIFGGQGNTDDY----FE--ELR--- 174
Query: 97 TANSKDGIALYDTRKP---------KEVLMQYGSCESCMSIRFNKAGTQLLG-LRR--RL 144
LY T E L + F + G +L L
Sbjct: 175 --------DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLNILEWLENPSNT 225
Query: 145 PPVLYNTRSSSPVA-------QFDHEGYYNSC 169
P Y S P++ Q H Y +
Sbjct: 226 PDKDY--LLSIPISCPLIGVIQLAH--YVVTA 253
Score = 38.9 bits (90), Expect = 9e-04
Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 28/119 (23%)
Query: 3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQD---AIFASACDDG 59
+G +++ V G + V+S G P Y + D F+
Sbjct: 362 AGKQVEISLVNGAKNLVVS-----GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE----- 411
Query: 60 RVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVA-------TANSKD-GIALYDTR 110
R L F R L V S PFH+ + P + + N+KD I +YDT
Sbjct: 412 RKLKFSNRF------LPVAS-PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Score = 35.4 bits (81), Expect = 0.012
Identities = 38/241 (15%), Positives = 63/241 (26%), Gaps = 102/241 (42%)
Query: 16 DDHVISH------DMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVL---LFDT 66
D+H D+ +P++ +H G + + A+ DG++ +F
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF-- 1707
Query: 67 RSREEATELAVNSGPFHAVMFNPVEARLVATAN--------SKDGIALYDTRKPKEVLMQ 118
+E E + + F + L AT A + E L
Sbjct: 1708 ---KEINEHST------SYTFRSEKGLLSATQFTQPALTLME---KAAF------EDLKS 1749
Query: 119 YG--------------------SCESCMSIRFNKAGTQLLGLR----RRLPPVLYNTRS- 153
G S MSI ++ +++ R + P RS
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSI---ESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 154 --------SSPVAQFDHE-------------GY------YNSCTMKSCCFAGTQDEYVVS 186
A F E G+ YN Q YV +
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV--------ENQQ--YVAA 1856
Query: 187 G 187
G
Sbjct: 1857 G 1857
Score = 30.4 bits (68), Expect = 0.60
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 20/96 (20%)
Query: 18 HVISHDMASGDPIDF---YLHERPVY----GLSVDPSQDAIFASACDDGRVLLFDTRSRE 70
+I+ D+ + + F + PVY G + +I D + R
Sbjct: 437 DLINKDLVKNN-VSFNAKDIQI-PVYDTFDGSDLRVLSGSISERIVD----CII----RL 486
Query: 71 EAT-ELAVNSGPFHAVMFNP-VEARLVA-TANSKDG 103
E H + F P + L T +KDG
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Score = 28.9 bits (64), Expect = 1.8
Identities = 7/12 (58%), Positives = 8/12 (66%), Gaps = 1/12 (8%)
Query: 214 HGSLEVSIL-PA 224
HGSLE +L P
Sbjct: 13 HGSLEHVLLVPT 24
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 40.3 bits (95), Expect = 2e-04
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 26 SGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV 85
+G V G++ P A+ DGR +D +R + P A
Sbjct: 263 NGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC 321
Query: 86 MFNPVEARLVATANSKDGIALYDTRKPKE 114
FN + A A+S D ++ P++
Sbjct: 322 CFNH-NGNIFAYASSYDWSKGHEFYNPQK 349
Score = 37.6 bits (88), Expect = 0.002
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEA 72
D D++S I H+ PV + + + + + D + +DTRS
Sbjct: 105 SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164
Query: 73 TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS 121
L + + A + P+ +VATA + + +Y + S
Sbjct: 165 MVLQLPERCYCADVIYPM--AVVATA-ERG-LIVYQLENQPSEFRRIES 209
Score = 31.9 bits (73), Expect = 0.16
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 32 FYLHERPVYGLSVDPSQDA-IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPV 90
+H PV L V S D +A D ++D S + +A + P + +
Sbjct: 82 QQMHTGPV--LDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKA 138
Query: 91 -EARLVATANSKDG-IALYDTRKPKEV 115
V T S D + +DTR +
Sbjct: 139 PNYSCVMTG-SWDKTLKFWDTRSSNPM 164
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 39.1 bits (92), Expect = 6e-04
Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 52/178 (29%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSG 80
D+ SG + F+ H V L + PS+ F S D + +++D RS + +
Sbjct: 182 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 241
Query: 81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGL 140
++V + P A+ S D + R
Sbjct: 242 DVNSVRYYP-SGDAFASG-SDDA-----------------------TCR----------- 265
Query: 141 RRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA--GTQDEYVVSGSDDFVLYMW 196
LY+ R+ VA + E + S F+ G + +G +D+ + +W
Sbjct: 266 -------LYDLRADREVAIYSKESIIFGAS--SVDFSLSGR---LLFAGYNDYTINVW 311
Score = 34.1 bits (79), Expect = 0.028
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNS- 79
DM SG + F HE V SV FAS DD L+D R+ E + S
Sbjct: 226 DMRSGQCVQAFETHESDVN--SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI 283
Query: 80 -GPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEV 115
+V F+ RL+ D I ++D K V
Sbjct: 284 IFGASSVDFSL-SGRLLFAG-YNDYTINVWDVLKGSRV 319
Score = 28.7 bits (65), Expect = 1.7
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
H V +D +D S+ DG+V+++D+ + + + + A + P
Sbjct: 63 HGNKVL--CMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGC 119
Query: 94 LVATANSKDG-IALYDTRKPKE 114
+A D ++Y K
Sbjct: 120 AIACG-GLDNKCSVYPLTFDKN 140
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 38.7 bits (89), Expect = 9e-04
Identities = 9/80 (11%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
V + +P+ ++ A DG + + + ++ +V ++P + +
Sbjct: 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQ 206
Query: 95 VATANSKDGIALYDTRKPKE 114
+A + Y ++
Sbjct: 207 LAVGKQNGTVVQYLPTLQEK 226
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 38.5 bits (89), Expect = 0.001
Identities = 26/217 (11%), Positives = 58/217 (26%), Gaps = 35/217 (16%)
Query: 2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRV 61
+ + K L+ D + + + L + + + A A D +
Sbjct: 68 ENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSL 127
Query: 62 LLFDTRSREEATELAVNSGPFH----AVMFNPVEARLVATANSKDG-IALYDTRKPKEVL 116
L+FD + F A+ + ++ K G + D E
Sbjct: 128 LVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA--DKFGDVYSIDINSIPEEK 185
Query: 117 MQ----YGSCESCMSIRFNKAGTQLLGL---------RRRLPPVLYNTRSSSPVAQFD-- 161
G + K + + + + V ++
Sbjct: 186 FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIK------ISHYPQCFIVDKWLFG 239
Query: 162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV 198
H+ + + S C +D ++S D ++ W
Sbjct: 240 HKHFVS-----SICC--GKDYLLLSAGGDDKIFAWDW 269
Score = 29.3 bits (65), Expect = 1.0
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 4 GDPIKVLRVIGNDDHVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDDGRV 61
D + + D+H+ +D +L H+ V S+ +D + SA D ++
Sbjct: 207 SDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS--SICCGKDYLLLSAGGDDKI 264
Query: 62 LLFDTRSREEATELAVNS--GPFHAVMFNPVEARLVATANSKD 102
+D ++ + + NS P+ + +
Sbjct: 265 FAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 38.3 bits (90), Expect = 0.001
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATELAVNSGPFHAV----MFNP 89
H+R VY +V + + AS DG + +++ E + + +
Sbjct: 249 HKRQVY--NVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLEL 306
Query: 90 VEARLVATANSKDG 103
++AT DG
Sbjct: 307 NGKTILATG-GDDG 319
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 38.0 bits (89), Expect = 0.001
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 22 HDMASGDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG 80
M G+ + + V+G+ + + A D V L D + LA +
Sbjct: 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRV-AWVSHDSTVCLADADKKMAVATLASETL 245
Query: 81 PFHAVMFNPVEARLVATANSKDGIALYD 108
P AV F E+ LVA L+
Sbjct: 246 PLLAVTFIT-ESSLVAAG-HDCFPVLFT 271
Score = 29.5 bits (67), Expect = 0.86
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQD-----AIFASAC 56
+ R D S A+ LH+ V + + F +
Sbjct: 292 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS--QISVLSGGKAKCSQFCTTG 349
Query: 57 DDGRVLLFDTRSREEA 72
DG + ++D RS E A
Sbjct: 350 MDGGMSIWDVRSLESA 365
Score = 28.4 bits (64), Expect = 1.8
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 24/116 (20%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEAT------------------EL 75
V S+D + + A+ D + +F +E E
Sbjct: 141 IRSTVL--SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198
Query: 76 AVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRF 130
+ + G H V F+ +R+ A S D + L D K V +++ F
Sbjct: 199 SSSCGWVHGVCFSANGSRV-AWV-SHDSTVCLADADKKMAVATLASETLPLLAVTF 252
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 38.1 bits (89), Expect = 0.002
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 34 LHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEA 92
++ S+D S + + + G V+L + +E L ++ V NP
Sbjct: 205 SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN-LRMHKKKVTHVALNPCCD 263
Query: 93 RLVATANSKDG-IALYDTRKPKEV 115
+ATA S D + ++D R+ +
Sbjct: 264 WFLATA-SVDQTVKIWDLRQVRGK 286
Score = 35.8 bits (83), Expect = 0.008
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT--ELAVNSGPFHAVMFNPVEA 92
+ GL +P F ++ +G L D + + F ++ + +
Sbjct: 163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SS 221
Query: 93 RLVATANSKDG 103
R+V T G
Sbjct: 222 RMVVTG-DNVG 231
Score = 35.8 bits (83), Expect = 0.008
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG---PFHAVMFNPVE 91
H++ V ++++P D A+A D V ++D R + P +A F+P +
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-D 307
Query: 92 ARLVATANSKDG-IALYDTRKPKEVL 116
+ T + I +Y + L
Sbjct: 308 GARLLTT-DQKSEIRVYSASQWDCPL 332
Score = 35.0 bits (81), Expect = 0.015
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 22 HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN-- 78
H + S + +R L+ P+ + A G ++L++ +++ T +
Sbjct: 104 HTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA 163
Query: 79 SGPFHAVMFNPVEARLVATANSKDG 103
G + FNP+ + S +G
Sbjct: 164 GGSITGLKFNPLNTNQFYAS-SMEG 187
Score = 28.5 bits (64), Expect = 2.0
Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 14/92 (15%)
Query: 23 DMASGDPIDFYL----HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAV 77
D+ +L H PV + S D A + + ++ + L
Sbjct: 279 DLRQVRGKASFLYSLPHRHPVN--AACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP 336
Query: 78 NSGPFH------AVMFNPVEARLVATANSKDG 103
+ ++P L+ D
Sbjct: 337 HPHRHFQHLTPIKAAWHPRY-NLIVVGRYPDP 367
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 38.0 bits (88), Expect = 0.002
Identities = 11/87 (12%), Positives = 33/87 (37%)
Query: 29 PIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFN 88
P + Y + P + ++ S V +FD ++ + + ++++
Sbjct: 161 PPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD 220
Query: 89 PVEARLVATANSKDGIALYDTRKPKEV 115
P+ + + + I++ D + E+
Sbjct: 221 PIRDLVYCSNWISEDISVIDRKTKLEI 247
Score = 36.4 bits (84), Expect = 0.005
Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 11/135 (8%)
Query: 12 VIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR 69
V + + D+ + L + L DP +D ++ S + + D +++
Sbjct: 185 VSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244
Query: 70 EEATELAVNSGPFHAVMFNPVEARLVATANSKDG-------IALYDTRKPKEVLMQYGSC 122
E + P ++ + L S + +Y K K ++ G
Sbjct: 245 LEIRKTDKIGLP-RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-LIDTIGPP 302
Query: 123 ESCMSIRFNKAGTQL 137
+ I ++
Sbjct: 303 GNKRHIVSGNTENKI 317
Score = 33.7 bits (77), Expect = 0.034
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV 77
+ M ID + +++ I+ S ++ ++D + ++ + V
Sbjct: 286 GIY--SMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV 343
Query: 78 NSGPFHAVMFNPVEARLVAT---ANSKDGIALYDTRKPKEV 115
P + + +P L + N L +V
Sbjct: 344 FDKP-NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKV 383
Score = 31.4 bits (71), Expect = 0.22
Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 17/111 (15%)
Query: 14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFAS--------------ACDDG 59
+ +D+ +++ P ++ S G
Sbjct: 322 MCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLG 381
Query: 60 RVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDT 109
+V + DT + + P + +P LV + + D I +Y
Sbjct: 382 KVYVIDTTTDTVKEFWEAGNQP-TGLDVSPDNRYLVIS-DFLDHQIRVYRR 430
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 37.9 bits (89), Expect = 0.002
Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 32/182 (17%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSG 80
D+ +G F H V S+ + D +F S D L+D R +
Sbjct: 170 DIETGQQTTTFTGHTGDVM--SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 81 PFHAVMFNPVEARLVATANSKDG-IALYD--TRKPKEVLMQYGSCESCMSIRFNKAGTQL 137
+A+ F P AT S D L+D + S+ F+K+G L
Sbjct: 228 DINAICFFP-NGNAFATG-SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 138 LG------LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFA--GTQDEYVVSGS 188
L +++ + H+ + G V +GS
Sbjct: 286 LAGYDDFNCN------VWDALKADRAGVLAGHDNRVS-----CLGVTDDGM---AVATGS 331
Query: 189 DD 190
D
Sbjct: 332 WD 333
Score = 37.1 bits (87), Expect = 0.002
Identities = 35/200 (17%), Positives = 70/200 (35%), Gaps = 30/200 (15%)
Query: 14 GNDDHVIS-HDMASGDPIDFYL-----HERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
G D++ S +++ + + H + D ++ D L+D
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCM 126
+ ++ T ++G ++ P + RL + + D L+D R+ G
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAP-DTRLFVSG-ACDASAKLWDVREGMCRQTFTGHESDIN 230
Query: 127 SIRFNKAGTQLL-G-----LRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA--G 178
+I F G G R L++ R+ + + H+ T S F+ G
Sbjct: 231 AICFFPNGNAFATGSDDATCR------LFDLRADQELMTYSHDNIICGIT--SVSFSKSG 282
Query: 179 TQDEYVVSGSDDFVLYMWRV 198
+++G DDF +W
Sbjct: 283 R---LLLAGYDDFNCNVWDA 299
Score = 34.0 bits (79), Expect = 0.027
Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 37/185 (20%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT----ELAV 77
D + + + L V + PS + + A D +++ ++RE ELA
Sbjct: 83 DSYTTNKVHAIPLRSSWVMTCAYAPSGNYV-ACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 78 NSGPFHAVMFNPVEARLVATANSKDG-IALYD--TRKPKEVLMQYGSCESCMSIRFNKAG 134
++G F + ++V + S D AL+D T + G MS+
Sbjct: 142 HTGYLSCCRFLD-DNQIVTS--SGDTTCALWDIETGQQTTTFT--GHTGDVMSLSLAPDT 196
Query: 135 TQLL-G-----LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFA--GTQDEYVV 185
+ G + L++ R F HE N + CF G
Sbjct: 197 RLFVSGACDASAK------LWDVREGMCRQTFTGHESDIN-----AICFFPNGN---AFA 242
Query: 186 SGSDD 190
+GSDD
Sbjct: 243 TGSDD 247
Score = 31.0 bits (71), Expect = 0.31
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 23 DMASGDPIDFYLHERPVYG-LSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSG 80
D+ + + Y H+ + G SV S+ + + DD ++D + A LA +
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 81 PFHAVMFNPVEARLVATANSKDG 103
+ + VAT S D
Sbjct: 314 RVSCLGVTD-DGMAVATG-SWDS 334
Score = 30.2 bits (69), Expect = 0.43
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
H +Y ++ D + SA DG+++++D+ + + + + S + P
Sbjct: 54 HLAKIY--AMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGN 110
Query: 94 LVATANSKDGIA-LYDTR 110
VA D I +Y+ +
Sbjct: 111 YVACG-GLDNICSIYNLK 127
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 37.6 bits (87), Expect = 0.002
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFD--TRSREEATELAVNSGPFHAVMFNPVE 91
HE PV+ + + I AS DG+VL++ + AV+S ++V + P E
Sbjct: 52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE 111
Query: 92 A-RLVATANSKDG-IALYDTRKPKEVLMQ--YGSCESCMSIRFN 131
L+ A S DG +++ + ++ S +
Sbjct: 112 YGPLLLVA-SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154
Score = 26.8 bits (59), Expect = 7.6
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 9/76 (11%)
Query: 35 HERPVYGLSVDPSQDA--IFASACDDGRVLLF--DTRSREEATELAVNSG---PFHAVMF 87
H V ++ P+ AS D +++ D L +
Sbjct: 203 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262
Query: 88 NPVEARLVATANSKDG 103
+ ++A + D
Sbjct: 263 SL-SGNVLALS-GGDN 276
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 37.2 bits (87), Expect = 0.002
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 43 SVDPSQDA-IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSK 101
+ D + + A A G + + + + + + + + F+P + L+ + SK
Sbjct: 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV-SK 136
Query: 102 DG 103
D
Sbjct: 137 DH 138
Score = 30.7 bits (70), Expect = 0.36
Identities = 21/170 (12%), Positives = 49/170 (28%), Gaps = 31/170 (18%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH-----AVMFNP 89
H + L P + S D + L++ ++ G H + ++
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG--HRDEVLSADYDL 171
Query: 90 VEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVL 148
+ + D + L+ + + S + + +Q + P
Sbjct: 172 -LGEKIMSC-GMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI----HFPDF- 224
Query: 149 YNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV 198
+TR H Y + + G ++S S + + W+
Sbjct: 225 -STRDI-------HRNYVD-----CVRWLGD---LILSKSCENAIVCWKP 258
Score = 28.8 bits (65), Expect = 1.6
Identities = 5/53 (9%), Positives = 13/53 (24%), Gaps = 4/53 (7%)
Query: 148 LYNTRSSSPVAQFD-HEGYYNSCTMKSCCFA---GTQDEYVVSGSDDFVLYMW 196
LY S + + +C + T + ++ +
Sbjct: 48 LYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 100
Score = 26.8 bits (60), Expect = 5.6
Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 11/77 (14%)
Query: 35 HERPVYGL--SVDPSQDAIFASACDDGRVLLFDTRSRE-EATELAVNSGPFH-----AVM 86
+ ++ + S+D Q + A G++ ++D + + +
Sbjct: 284 SQCDIWYMRFSMDFWQKML-ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTS 342
Query: 87 FNPVEARLVATANSKDG 103
F+ ++ ++ D
Sbjct: 343 FSR-DSSILIAV-CDDA 357
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 37.2 bits (87), Expect = 0.003
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRV 61
SG ++ + I+ + SG + V+ D F G +
Sbjct: 179 ISGTVMQHFELKETGGSSINAENHSG-------DGSLG--VDVEWVDDDKFVIPGPKGAI 229
Query: 62 LLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG 103
++ + +L + GP + FN +L+ +A S DG
Sbjct: 230 FVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSA-SDDG 269
Score = 36.9 bits (86), Expect = 0.004
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 23 DMASGDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
+G+ FY H + + S D S DG V L+ + V+ P
Sbjct: 275 HGGNGNSQNCFYGHSQSIV--SASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVP 332
Query: 82 FHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQ-YGSCESCMSIRFNKAGTQLL 138
A + + + A A DG + +YD +K YG+ + ++
Sbjct: 333 IFAGRISQ-DGQKYAVA-FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ 389
Score = 27.6 bits (62), Expect = 3.7
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVM---FNPV 90
H P+ SV ++D S + +L++ S + ++ +
Sbjct: 148 HRAPIV--SVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGD 205
Query: 91 EARLVATANSKDG 103
+ V D
Sbjct: 206 GSLGVDVEWVDDD 218
Score = 26.8 bits (60), Expect = 6.2
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 14 GNDDHVISHDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA 72
G + + + P H P+ L + + + SA DDG + ++ +
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL-LSASDDGTLRIWHGGNGNSQ 282
Query: 73 TELAVNSGPFHAVMFNP 89
+S + +
Sbjct: 283 NCFYGHSQSIVSASWVG 299
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 36.1 bits (84), Expect = 0.005
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFD--TRSREEATELAVNSGPFHAVMFNPVE 91
HE PV+ + + I AS DG+VL++ + AV+S ++V + P E
Sbjct: 54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE 113
Query: 92 A-RLVATANSKDG-IALYD--TRKPKEVLMQYGSCESCMSIRFN 131
L+ A S DG +++ + ++ S +
Sbjct: 114 YGPLLLVA-SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 156
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 35.9 bits (83), Expect = 0.007
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 16 DDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE- 74
+ V + Y V+ + PS +A+ A A D V + + E+
Sbjct: 185 EASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNAL-AYAGHDSSVTIAYPSAPEQPPRA 243
Query: 75 ---LAVNSGPFHAVMFNPVEARLVAT 97
+ ++ P ++++ E+ +VA
Sbjct: 244 LITVKLSQLPLRSLLWAN-ESAIVAA 268
Score = 30.1 bits (68), Expect = 0.53
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 34 LHERPVYGL---SVDPSQDAIFASACDDGRVLLFD 65
+H+ + L + P F S+ DGRV+L+
Sbjct: 342 VHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376
Score = 28.9 bits (65), Expect = 1.4
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 21/98 (21%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAV---------------- 77
+ S+D + + A+ C D + + R+ +
Sbjct: 145 LRSTIL--SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY 202
Query: 78 -NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE 114
+ G HAV F+P L A A + + P++
Sbjct: 203 PSGGWVHAVGFSPSGNAL-AYAGHDSSVTIAYPSAPEQ 239
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 35.9 bits (83), Expect = 0.008
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN------SGPFHAVMFN 88
+ SVD S+ + A+ ++G V + + + S +V F+
Sbjct: 185 PSQFAT--SVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242
Query: 89 PVEARLVATA---NSKDGIALYDTRKPKEV 115
P + L+A A NS I LY+T + +
Sbjct: 243 P-QGSLLAIAHDSNSFGCITLYETEFGERI 271
Score = 28.9 bits (65), Expect = 1.4
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAI----FASACDD 58
SGD + I +D D +D + + + L S D + +
Sbjct: 90 SGD-LLFY-RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 147
Query: 59 GRVLLFDTRSREEATE 74
G ++ + +
Sbjct: 148 GTTYIWKFHPFADESN 163
Score = 26.6 bits (59), Expect = 6.5
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGP----FHAVMFNP 89
H V S+ + SA DG++ +D +++E T L ++ + +
Sbjct: 290 HSSWVM--SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 347
Query: 90 VEARLV 95
L
Sbjct: 348 HGDSLA 353
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 35.3 bits (82), Expect = 0.010
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 23 DMASGDPI----DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN 78
D+ +G + H+ V L + + ++ DDG V L+D ++ E L
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNF---VITSSDDGTVKLWDLKTGEFIRNLVTL 401
Query: 79 SGPFH-----AVMFNPVEARLVATANSKDG 103
+ + + A S++G
Sbjct: 402 ESGGSGGVVWRIRASN-TKLVCAVG-SRNG 429
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 35.3 bits (82), Expect = 0.011
Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 42/174 (24%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFD--TRSREEATELAVNSGPFHAVMFNPVE 91
HE PV+ + + I AS DG+V+++ + AV+S ++V + P E
Sbjct: 52 HEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE 111
Query: 92 A-RLVATANSKDG-IALYD--TRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPV 147
++ A S DG +++ + ++ S +
Sbjct: 112 YGPMLLVA-SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW----------------- 153
Query: 148 LYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD 201
+P + + + + V+G D ++ +W+ D
Sbjct: 154 -------APATIEEDGEHNGT----------KESRKFVTGGADNLVKIWKYNSD 190
Score = 26.4 bits (59), Expect = 7.0
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 9/76 (11%)
Query: 35 HERPVYGLSVDPSQDA--IFASACDDGRVLLF--DTRSREEATELAVNSG---PFHAVMF 87
H V ++ P+ AS D +++ D L +
Sbjct: 203 HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262
Query: 88 NPVEARLVATANSKDG 103
+ ++A + D
Sbjct: 263 SL-SGNVLALS-GGDN 276
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 35.1 bits (81), Expect = 0.013
Identities = 7/67 (10%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 44 VDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG 103
+ + R+ F T + E ++ + + +V T++
Sbjct: 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDF-VDTAITSDCSNVVVTSDFCQT 63
Query: 104 IALYDTR 110
+ +T+
Sbjct: 64 LVQIETQ 70
Score = 32.4 bits (74), Expect = 0.096
Identities = 14/111 (12%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 40 YGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA---VNSGPFHAVMFNPVEARLVA 96
+ ++ P + F + + + +T++ E T L N+ P ++ + + +
Sbjct: 179 FNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLP-GTIVVSRDGSTVYV 237
Query: 97 TANSKDGIALYDTRK---------PKEVLMQYGSCESCMSIRFNKAGTQLL 138
S + ++ +L+ + NK T+L
Sbjct: 238 LTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288
Score = 31.7 bits (72), Expect = 0.14
Identities = 5/92 (5%), Positives = 20/92 (21%), Gaps = 5/92 (5%)
Query: 19 VISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT--ELA 76
+ + ++ ++ + ++ ++ +T+
Sbjct: 24 FF--STDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81
Query: 77 VNSGPFHAVMFNPVEARLVATANSKDGIALYD 108
S V P + V +
Sbjct: 82 GQSSMAD-VDITPDDQFAVTVTGLNHPFNMQS 112
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 34.9 bits (81), Expect = 0.015
Identities = 16/122 (13%), Positives = 42/122 (34%), Gaps = 8/122 (6%)
Query: 2 ASGDPIKVLRVIGN-DDHVISHDMASGDPID-FYLHERPVYGLSVDPSQD-AIFASACDD 58
+G I N D V S + G + +++ +
Sbjct: 211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN--NLEFGTYGKYVIAGHVS 268
Query: 59 GRVLLFDTRSREE-ATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVL 116
G + + + S+E+ + + +++ + A + ++G +A +D R P+ +
Sbjct: 269 GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG-YENGMLAQWDLRSPECPV 327
Query: 117 MQ 118
+
Sbjct: 328 GE 329
Score = 31.8 bits (73), Expect = 0.17
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 9/130 (6%)
Query: 14 GNDDHVIS-HDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE 70
G+ VI+ H++ S + L+VD + + ++G + +D RS E
Sbjct: 265 GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324
Query: 71 EATE--LAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMS 127
L P + V F L ++ D I L P+
Sbjct: 325 CPVGEFLINEGTPINNVYFAA--GALFVSS-GFDTSIKLDIISDPESERPAIEFETPTFL 381
Query: 128 IRFNKAGTQL 137
+ + A +Q
Sbjct: 382 VSNDDAVSQF 391
Score = 31.1 bits (71), Expect = 0.29
Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 37/169 (21%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
H V + SA DG + L++ + P V
Sbjct: 180 HRATVT--DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV-------N 230
Query: 94 LVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLL-G-----LRRRLPPV 147
+A L++ S ++ F G ++ G +
Sbjct: 231 SIALF-VGTDRQLHE-----------ISTSKKNNLEFGTYGKYVIAGHVSGVIT------ 272
Query: 148 LYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW 196
++N S Q + SC S G Y+ +G ++ +L W
Sbjct: 273 VHNVFSKEQTIQL-PSKFTCSCN--SLTVDGNNANYIYAGYENGMLAQW 318
Score = 27.2 bits (61), Expect = 5.2
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 14/71 (19%)
Query: 53 ASACDDGRVLLFDTRSREEATEL----AVNSGPFHAVMFNPVEARLVATANSKDG-IALY 107
A DG LF+T R+ + L + R + +G I +
Sbjct: 72 YKARLDGHDFLFNTIIRDGSKMLKRADYTAV-----DTAKL-QMRRFILG-TTEGDIKVL 124
Query: 108 D--TRKPKEVL 116
D +E+
Sbjct: 125 DSNFNLQREID 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 34.4 bits (78), Expect = 0.021
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 11 RVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE 70
R G + + S D+ I Y ++V ++ G + +D + E
Sbjct: 254 RAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVW-LGGALGDLAAYDAETLE 312
Query: 71 EATELAVNSGP 81
+ ++ +
Sbjct: 313 KKGQVDLPGNA 323
Score = 28.2 bits (62), Expect = 2.5
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 57 DDGRVLLFDTRSREEATELAVNSGPF--HAVMFNPVEARLVATANSKDGIALYDTRKPKE 114
++++ DT + + M P AT N + + D +
Sbjct: 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET 68
Query: 115 V 115
+
Sbjct: 69 L 69
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 34.2 bits (79), Expect = 0.022
Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 6/109 (5%)
Query: 35 HERPVYGLSVDPSQDAIF---ASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVE 91
H+ + +S PS + A+ C DGR+ +F + + + +
Sbjct: 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV 272
Query: 92 ARLV---ATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQL 137
+ +N+++ L + + + S+ +N GT L
Sbjct: 273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL 321
Score = 31.9 bits (73), Expect = 0.15
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 17/95 (17%)
Query: 35 HERPVYGLSVD---PSQDAIFASACDDGRVLLFDTRSREEA---------TELAVNSGPF 82
H+ + ++D P I ASA D V L++ +E L + G
Sbjct: 56 HDSSIV--AIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSL 113
Query: 83 HAVMFNPVEA-RLVATANSKDG-IALYDTRKPKEV 115
++V F P +A DG + LYD +P ++
Sbjct: 114 YSVKFAPAHLGLKLACL-GNDGILRLYDALEPSDL 147
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 33.7 bits (78), Expect = 0.033
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 14 GNDDHVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE 71
+ HD+ + L H V GL+ AS +D V ++D RS
Sbjct: 193 SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD-GLQLASGGNDNVVQIWDARSSIP 251
Query: 72 ATELAVNSGPFHAVMFNPVEARLVATA 98
++ AV + P ++ L+AT
Sbjct: 252 KFTKTNHNAAVKAVAWCPWQSNLLATG 278
Score = 28.7 bits (65), Expect = 1.6
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 12 VIGNDDHVIS-HDMASGDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR 69
+G + ++ +D+ S + H+ V + ++ + +S G + D R
Sbjct: 150 SVGLGNGLVDIYDVESQTKLRTMAGHQARVG--CLSWNRH-VLSSGSRSGAIHHHDVRIA 206
Query: 70 E 70
Sbjct: 207 N 207
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 33.6 bits (78), Expect = 0.037
Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 34/191 (17%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSG 80
+ SG + + S+ S D AS DG + +FD + + L ++
Sbjct: 150 GVESGKKEYSLDTRGKFIL--SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM 207
Query: 81 PFHAVMFNPVEARLVATANSKDG-IALYD--TRKPKEVLMQYGSCESCMSIRFNKAGTQL 137
P ++ F+P +++L+ TA S DG I +YD L G +++ F T
Sbjct: 208 PIRSLTFSP-DSQLLVTA-SDDGYIKIYDVQHANLAGTL--SGHASWVLNVAFCPDDTHF 263
Query: 138 L-G-----LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFA--GTQDEYVVSGS 188
+ ++ +++ + + V F H+ + G+ +VS
Sbjct: 264 VSSSSDKSVK------VWDVGTRTCVHTFFDHQDQVW-----GVKYNGNGS---KIVSVG 309
Query: 189 DDFVLYMWRVP 199
DD ++++ P
Sbjct: 310 DDQEIHIYDCP 320
Score = 33.6 bits (78), Expect = 0.039
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
H+ V SVD S I AS+ D + L+D + ++ + + F+P +++
Sbjct: 79 HQLGVV--SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQ 135
Query: 94 LVATANSKDG-IALYD--TRKPKEVL 116
+AT + G + ++ + K + L
Sbjct: 136 YLATG-THVGKVNIFGVESGKKEYSL 160
Score = 29.7 bits (68), Expect = 0.61
Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 32/181 (17%)
Query: 23 DMASGDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
D+ +G I + L+ P + A+ G+V +F S ++ L
Sbjct: 108 DLENGKQIKSIDAGPVDAWTLAFSPDSQYL-ATGTHVGKVNIFGVESGKKEYSLDTRGKF 166
Query: 82 FHAVMFNPVEARLVATANSKDG-IALYD--TRKPKEVLMQYGSCESCMSIRFNKAGTQLL 138
++ ++P + + +A+ + DG I ++D T K L G S+ F+ L+
Sbjct: 167 ILSIAYSP-DGKYLASG-AIDGIINIFDIATGKLLHTL--EGHAMPIRSLTFSPDSQLLV 222
Query: 139 -G-----LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFA--GTQDEYVVSGSD 189
++ +Y+ + ++ H + + F T + VS S
Sbjct: 223 TASDDGYIK------IYDVQHANLAGTLSGHASWVL-----NVAFCPDDT---HFVSSSS 268
Query: 190 D 190
D
Sbjct: 269 D 269
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 33.7 bits (78), Expect = 0.039
Identities = 0/89 (0%), Positives = 0/89 (0%), Gaps = 11/89 (12%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH-------AVMF 87
+ P+Q + A S P
Sbjct: 248 GTDAAAQPAAIPAQAGA-DWTAAPAPAAGGWDTAAAPAPGWEQGSAPVPAAAPTPN 306
Query: 88 NPVEARLVATANSKDG-IALYDTRKPKEV 115
Sbjct: 307 -- 333
Score = 29.8 bits (68), Expect = 0.66
Identities = 4/84 (4%), Positives = 11/84 (13%), Gaps = 6/84 (7%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATE-LAVNSGPFHAVMFNPVEA 92
+ A+ + + + T + P
Sbjct: 204 DLFFYRDPEE-AKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIP-AQ 261
Query: 93 RLVATANSKDG-IALYDTRKPKEV 115
+ A
Sbjct: 262 AGADWT-AAPAPAAGGWDTAAAPA 284
Score = 29.8 bits (68), Expect = 0.72
Identities = 5/77 (6%), Positives = 17/77 (22%), Gaps = 6/77 (7%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
R + +++ QD + ++ R +L + ++
Sbjct: 65 AARVIV--AIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQT-SFS 121
Query: 94 LVATANSKDG-IALYDT 109
+
Sbjct: 122 EPRLL-ILTDPRTDHQP 137
Score = 29.5 bits (67), Expect = 0.84
Identities = 0/97 (0%), Positives = 0/97 (0%), Gaps = 10/97 (10%)
Query: 26 SGDPIDFYLHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVN----SG 80
Sbjct: 288 EQGSAPVPAAAPTPN-- 345
Query: 81 PFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVL 116
Sbjct: 346 -- 380
Score = 29.5 bits (67), Expect = 0.98
Identities = 3/102 (2%), Positives = 12/102 (11%), Gaps = 11/102 (10%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
H + + S + +
Sbjct: 94 FAQYTGAHAIAGRHTPGTFTNQLQTSFSEP-RLLILTDPRTDHQPIKESALGNIPTIAFC 152
Query: 82 F--H-----AVMFNPVEARLVATANSKDG-IALYDTRKPKEV 115
+ + +A + +
Sbjct: 153 DTDSPMRYVDIGIPANNKGKQSIG-CLFWLLARMVLQMRGTI 193
Score = 28.3 bits (64), Expect = 2.0
Identities = 3/69 (4%), Positives = 14/69 (20%), Gaps = 4/69 (5%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
G + ++ + +L + + A+ + +
Sbjct: 24 AADVHLGTKNCD--FQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQ-DIIV 80
Query: 95 VATANSKDG 103
+
Sbjct: 81 QSAR-PYGQ 88
Score = 26.4 bits (59), Expect = 7.8
Identities = 5/88 (5%), Positives = 14/88 (15%), Gaps = 7/88 (7%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH-----AVMFNP 89
+ + + + C + + R
Sbjct: 156 SPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAK 215
Query: 90 VEARLVATANSKDG-IALYDTRKPKEVL 116
+ A A+ + P
Sbjct: 216 EQEEEEAAL-VAPDYGAVAEYAAPAADT 242
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 33.4 bits (77), Expect = 0.046
Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 43/174 (24%)
Query: 35 HERPVYGLSVD---PSQDAIFASACDDGRVLLFD--TRSREEATELAVNSGPFHAVMFNP 89
HE PV+ V P I AS D +V+++ + E++ E A + ++V + P
Sbjct: 56 HEGPVW--QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP 113
Query: 90 VEA-RLVATANSKDG-IALYDTRKPKEVLMQY---GSCESCMSIRFNKAGTQLLGLRRRL 144
+ ++A S DG I+L + ++ C ++ + A
Sbjct: 114 HDYGLILACG-SSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP-------- 164
Query: 145 PPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV 198
S + SG D ++ +W+
Sbjct: 165 ----------------------GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE 196
Score = 29.2 bits (66), Expect = 1.1
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNP 89
V+ V S I A + D +V L+ + ++ + +V +
Sbjct: 261 FNDVVW--HVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV 314
Score = 28.0 bits (63), Expect = 2.7
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 35 HERPVYGLSVDPSQDAIF---ASACDDGRVLLFDTRSRE----EATELAVNSGPFHAVMF 87
H V ++ PS AS DGRV ++ L + V +
Sbjct: 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW 270
Query: 88 NPVEARLVATANSKDG 103
+ A ++A + D
Sbjct: 271 SI-TANILAVS-GGDN 284
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 33.1 bits (76), Expect = 0.061
Identities = 24/213 (11%), Positives = 65/213 (30%), Gaps = 43/213 (20%)
Query: 14 GNDDHVIS-HDMASGDPIDFYLHERPVYGLSVDP---SQD-AIFASACDDGRVLLFDTRS 68
VI +++ GD E+ S A+ G + +++ +
Sbjct: 40 ARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA 99
Query: 69 REEATEL------AVNS-GPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYG 120
E +N+ + A + T S+DG + ++D R+ + +
Sbjct: 100 PEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTG-SRDGTVKVWDPRQKDDPVANME 157
Query: 121 SCES---------CMSIRFNKAGTQLLG------LRRRLPPVLYNTRSSSPVAQFDHEGY 165
+ +N+ + ++ L++ R+ + + + +
Sbjct: 158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIK------LFDLRNMALRWETNIKNG 211
Query: 166 YNSCTMKSCCFA--GTQDEYVVSGSDDFVLYMW 196
+ S F +V+ S + +++
Sbjct: 212 -----VCSLEFDRKDISMNKLVATSLEGKFHVF 239
Score = 31.2 bits (71), Expect = 0.22
Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 42 LSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNP--VEARLVATA 98
+Q+ + + D+G + LFD R+ E + ++ F+ + +
Sbjct: 172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI-KNGVCSLEFDRKDISMNKLVAT 230
Query: 99 NSKDG-IALYDTR-----KPKEVLMQYGSCESCMSIRFNKAGTQLL 138
S +G ++D R K + + + +R +L
Sbjct: 231 -SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELF 275
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 33.0 bits (76), Expect = 0.063
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 14 GNDDHVISH-DMASGDPIDFYL--HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSR 69
G+ D IS D+++ + HE+ + + S D F ++ D L D +
Sbjct: 193 GHKDGKISKYDVSNNYEYVDSIDLHEKSIS--DMQFSPDLTYFITSSRDTNSFLVDVSTL 250
Query: 70 EEATELAVNSGPFHAVMFNPVEARLVATANSKD 102
+ + + P + + P++ ++ +
Sbjct: 251 QVLKKYETDC-PLNTAVITPLKEFIILGGGQEA 282
Score = 32.2 bits (74), Expect = 0.10
Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 25/192 (13%)
Query: 23 DMASGD-PIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
S I HERP+ + + D + S D ++ + + E L ++G
Sbjct: 18 FQGSHMKAIKLTGHERPLTQVKYNKEGDLL-FSCSKDSSASVWYSLNGERLGTLDGHTGT 76
Query: 82 FHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLG- 139
++ + + T S D I L+D + V + F+ G L
Sbjct: 77 IWSIDVDC-FTKYCVTG-SADYSIKLWDVSNGQCVATWKSP-VPVKRVEFSPCGNYFLAI 133
Query: 140 ---------------LRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYV 184
+ R S P+ + ++ T + T+ +Y+
Sbjct: 134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT--VAGW-STKGKYI 190
Query: 185 VSGSDDFVLYMW 196
++G D + +
Sbjct: 191 IAGHKDGKISKY 202
Score = 28.0 bits (63), Expect = 3.0
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 53 ASACDDGRVLLFDTRSREEATE-LAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTR 110
+ DG++ +D + E + + ++ + F+P + T+ S+D L D
Sbjct: 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITS-SRDTNSFLVDVS 248
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 31.8 bits (73), Expect = 0.14
Identities = 29/185 (15%), Positives = 62/185 (33%), Gaps = 50/185 (27%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSG 80
++ +G + F H V V P+QD + AS +D V ++ ++E EL +
Sbjct: 220 EVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLL-G 139
+ + P + + + K G LL G
Sbjct: 278 VVECISWAP------------ESSYSSI-----------SEATGSETKKSGKPGPFLLSG 314
Query: 140 -----LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFA--GTQDEYVVSGSDDF 191
++ +++ + + H+ + ++ F G +++S +DD
Sbjct: 315 SRDKTIK------MWDVSTGMCLMTLVGHDNW-----VRGVLFHSGGK---FILSCADDK 360
Query: 192 VLYMW 196
L +W
Sbjct: 361 TLRVW 365
Score = 30.3 bits (69), Expect = 0.45
Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 32/191 (16%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
D +GD H V +S D + AS D + L+D + E + +
Sbjct: 136 DYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN 194
Query: 82 FHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLL-G 139
+V P + +A S+D I +++ + V G E +R N+ GT +
Sbjct: 195 VSSVSIMP-NGDHIVSA-SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 252
Query: 140 -----LRRRLPPVLYNTRSSSPVAQF-DHEGYYNSC-------TMKSCCFAGTQD----- 181
+R ++ + A+ +H G++
Sbjct: 253 SNDQTVR------VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306
Query: 182 --EYVVSGSDD 190
+++SGS D
Sbjct: 307 PGPFLLSGSRD 317
Score = 29.9 bits (68), Expect = 0.74
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
H+ V G+ I S DD + ++D +++ L + ++ F+ A
Sbjct: 337 HDNWVRGVLFHSGGKFI-LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPY 394
Query: 95 VATANSKDG-IALYDTR 110
V T S D + +++ R
Sbjct: 395 VVTG-SVDQTVKVWECR 410
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 31.6 bits (71), Expect = 0.15
Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 4/77 (5%)
Query: 41 GLSVDPSQDAIFASACDDGRVLLFDTRSRE--EATELAVNSGPFHAVMFNPVEARLVATA 98
G ++ + + + + + D S ++ + GP M P
Sbjct: 4 GPALKAGHEYMIVTN-YPNNLHVVDVASDTVYKSCVMPDKFGP-GTAMMAPDNRTAYVLN 61
Query: 99 NSKDGIALYDTRKPKEV 115
N I D K
Sbjct: 62 NHYGDIYGIDLDTCKNT 78
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 30.9 bits (71), Expect = 0.31
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
Y ++ S D + S C DG + ++D ++ + ++ + + +
Sbjct: 140 SAPACY--ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGT 196
Query: 94 LVATANSKDG 103
+ T D
Sbjct: 197 KLWTG-GLDN 205
Score = 30.2 bits (69), Expect = 0.57
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 3/88 (3%)
Query: 28 DPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMF 87
D + +P Y V D + R + L + AV
Sbjct: 1 DYFQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTI 59
Query: 88 NPVEARLVATANSKDGIALYDTRKPKEV 115
+ R V T K + ++D P
Sbjct: 60 SN-PTRHVYTG-GKGCVKVWDISHPGNK 85
Score = 29.4 bits (67), Expect = 0.81
Identities = 20/178 (11%), Positives = 47/178 (26%), Gaps = 55/178 (30%)
Query: 23 DMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF 82
D+ G + + ++ L P+ + + A + V + ++ L ++
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWL-AVGMESSNVEVLHVNKPDKYQ-LHLHESCV 268
Query: 83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR 142
++ F + + KD +
Sbjct: 269 LSLKFAY-CGKWFVST-GKDN-----------------------LLN------------- 290
Query: 143 RLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA--GTQDEYVVSGSDDFVLYMWRV 198
+ T + + Q SC + Y+V+GS D ++ V
Sbjct: 291 -----AWRTPYGASIFQSKESSSVLSC-----DISVDDK---YIVTGSGDKKATVYEV 335
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 30.6 bits (70), Expect = 0.39
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 23 DMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG 80
D +G + L H++ V V D+ AS DG V L+ + T + G
Sbjct: 3 DPFTGYQLSATLKGHDQDVR--DVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG 60
Query: 81 PFHAVMFNPVEARLVATANSKDG----IALYD--TRKPKEVL 116
++V ++ E L+ KD + L+ P L
Sbjct: 61 FLNSVCYDS-EKELLLFG-GKDTMINGVPLFATSGEDPLYTL 100
Score = 29.4 bits (67), Expect = 0.77
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 23 DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
DM +GD + + HE VY + + P + S +D V ++ + + + +
Sbjct: 211 DMHTGDVLRTYEGHESFVYCIKLLP--NGDIVSCGEDRTVRIWSKENGSLKQVITLPAIS 268
Query: 82 FHAVMFNPVEARLVATANSKDGI 104
+V ++ S D +
Sbjct: 269 IWSVDCMS-NGDIIVG--SSDNL 288
Score = 28.6 bits (65), Expect = 1.3
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNP 89
H V L+V D F S +DG + L D + + + + + P
Sbjct: 183 HNDVVRHLAVVD--DGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP 235
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 30.4 bits (69), Expect = 0.54
Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 11/137 (8%)
Query: 70 EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYD--TRKPKEVL--MQYGSCESC 125
+E E P AV E L + + + + + + M
Sbjct: 287 DEGLEAVNKDKPLGAVALKSYEEELAK--DPRIAATMENAQKGEIMPNIPQMSAFWYAVR 344
Query: 126 MSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVV 185
++ +G Q + H + + +V
Sbjct: 345 TAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAI-----ATPIDNADIIV 399
Query: 186 SGSDDFVLYMWRVPRDD 202
S S D + +W++ +DD
Sbjct: 400 SASRDKSIILWKLTKDD 416
Score = 28.1 bits (63), Expect = 3.1
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 38/169 (22%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
H V +V S D ++ AS DG VLL+D ++ L NS HA+ F+P
Sbjct: 560 HTGYVS--TVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSP-NRY 615
Query: 94 LVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS 153
+ A ++ GI ++D ++ + + L+ L +
Sbjct: 616 WLCAA-TEHGIKIWDL----------------------ESKSIVEDLKVDLKAEAEKADN 652
Query: 154 SSPVAQFDHEGYYNSCTMKSCCFA--GTQDEYVVSGSDDFVLYMWRVPR 200
S P A Y CT S ++ G+ + SG D V+ +W + R
Sbjct: 653 SGPAATKRKVIY---CT--SLNWSADGS---TLFSGYTDGVIRVWGIGR 693
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 30.3 bits (69), Expect = 0.54
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 35 HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNP 89
HE V + S + A+ D ++L++D + + + FNP
Sbjct: 212 HESNVN--HLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP 265
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 29.4 bits (67), Expect = 0.94
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 35 HERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
H V + P S + I S D V +++ + + T ++G + V +P +
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGS 228
Query: 94 LVATANSKDG-IALYDTRKPKEV 115
L A+ KDG L+D + K +
Sbjct: 229 LCASG-GKDGQAMLWDLNEGKHL 250
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 29.3 bits (66), Expect = 1.0
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 38 PVYGLSVDPSQDAIFASACDDGRVLLF---DTRSREEATELAVNSGPFHAVMFNPVEARL 94
+ +S D +F + + G V + D + G H+ +P L
Sbjct: 86 LTH-ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGC-HSANISPDNRTL 143
Query: 95 VATANSKDGIALYD 108
A +D I L+
Sbjct: 144 WVPALKQDRICLFT 157
Score = 27.3 bits (61), Expect = 4.5
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 42 LSVDPSQDAIFASACDDGRVLLF----DTRSREEATELAVNSGPFHAVMFNPVEARLVAT 97
+ V P + ++ + RVL + D + A E A+ H + + + + V
Sbjct: 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH-ISTDH-QGQFVFV 100
Query: 98 ANSKDG-IALYDTRK 111
+ G +++
Sbjct: 101 GSYNAGNVSVTRLED 115
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 28.8 bits (65), Expect = 1.5
Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
H V + +D + DD + ++D+ +++ +L+ + G A+ + +
Sbjct: 120 HMTSVI--TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGI 175
Query: 95 VATANSKDG-IALYD--TRKPKEVLMQYGSCESCMSIRFNKAGTQL 137
+ + S D + ++D V + S C+ I K +
Sbjct: 176 LVSG-STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 220
Score = 26.8 bits (60), Expect = 5.8
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 4/61 (6%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
H V L + SA DG + +D ++ F + L
Sbjct: 351 HTALVGLLRLSDK---FLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNIL 406
Query: 95 V 95
V
Sbjct: 407 V 407
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 28.1 bits (62), Expect = 2.2
Identities = 8/84 (9%), Positives = 25/84 (29%), Gaps = 3/84 (3%)
Query: 79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLL 138
S P FN + + + + +Y+ ++ Q S + + +
Sbjct: 19 SNPVTDYEFNQ-DQSCLILS-TLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFV 76
Query: 139 GLRRRLPPVLYNTRSSSPVAQFDH 162
+ +++ V++
Sbjct: 77 TGVKE-VVHIWDDVKKQDVSRIKV 99
Score = 26.9 bits (59), Expect = 6.4
Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 15/161 (9%)
Query: 49 DAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG--IAL 106
+ + + + + ++ P V N ++ +VAT S+DG I +
Sbjct: 165 KLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATC-SQDGTIIRV 222
Query: 107 YDTRKPKEVLMQYGSCESCM--SIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEG 164
+ T V + ++++ G++L + + ++ + + +G
Sbjct: 223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG 282
Query: 165 YYNSCTMKS----CCFAGTQDE-----YVVSGSDDFVLYMW 196
+ N +S C F + D+ + S+ ++ +W
Sbjct: 283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVW 323
>3b48_A Uncharacterized protein; enterococcus faecalis V583, structural
genomics, PSI-2, PROT structure initiative; 2.21A
{Enterococcus faecalis} SCOP: c.54.1.2
Length = 135
Score = 27.2 bits (60), Expect = 2.7
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 26/112 (23%)
Query: 1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR 60
M + + I + + G D + G D I + D
Sbjct: 28 MNASEEITIHSLGGTSDGSL--------------------GSDPMKIIDTINEADSDREF 67
Query: 61 VLLFD----TRSREEATELAVNSGPFHAVMFN-P-VEARLVATANSKDGIAL 106
++ D S E A ++ H + + P VE + + L
Sbjct: 68 LIFADLGSAVLSSELAFDMLEEDQQKHYHLVDAPLVEGAFASAITAGVSDDL 119
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 27.2 bits (61), Expect = 4.5
Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQD-AIFASACDDGR 60
+ G + L DD + D + + + + SV S D A+ +D
Sbjct: 93 SDGSLVARLS----DDSAANKDPENLNTSSSPSSDLYIR--SVCFSPDGKFLATGAEDRL 146
Query: 61 VLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG 103
+ ++D +R+ L + +++ + P + + S D
Sbjct: 147 IRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSG-SGDR 187
Score = 26.8 bits (60), Expect = 6.4
Identities = 32/204 (15%), Positives = 69/204 (33%), Gaps = 37/204 (18%)
Query: 23 DMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF 82
D+ +G E V ++V P A+ D V ++D+ + L +
Sbjct: 193 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG 252
Query: 83 --H-----AVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQY----GSCE------- 123
H +V+F + + V + S D + L++ + G+CE
Sbjct: 253 TGHKDSVYSVVFTR-DGQSVVSG-SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310
Query: 124 -SCMSIRFNKAGTQLL------GLRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCC 175
+S+ + +L G+ ++ +S +P+ H S + +
Sbjct: 311 DFVLSVATTQNDEYILSGSKDRGVL------FWDKKSGNPLLMLQGHRNSVISVAV-ANG 363
Query: 176 FAGTQD-EYVVSGSDDFVLYMWRV 198
+ + +GS D +W+
Sbjct: 364 SSLGPEYNVFATGSGDCKARIWKY 387
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET:
TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Length = 368
Score = 27.0 bits (59), Expect = 5.4
Identities = 7/54 (12%), Positives = 9/54 (16%), Gaps = 3/54 (5%)
Query: 46 PSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATAN 99
P A + D + A G N A
Sbjct: 172 PGAAATHYLGSCPASLAASDLAAAPAAAG---IVGAQCTGAQNCSSQAAQANYP 222
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 27.1 bits (61), Expect = 5.5
Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 37/185 (20%)
Query: 35 HERPVYGLSVDPSQDA-----IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNP 89
H V + V P++ A SA +D V ++ + + ++ + + +P
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Query: 90 VEARLVATANSKDG-IALYD--TRKPKEVLMQYGSCESCMSIRFNKAGTQLL-----GLR 141
+ L+A+A KDG I L++ +K L S+ F+ L G++
Sbjct: 207 -DGTLIASA-GKDGEIMLWNLAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATATGIK 261
Query: 142 RRLPPVLYNTRSSSPVAQFDH------EGYYNSCTMKSCCFA--GTQDEYVVSGSDDFVL 193
+++ V + S ++ G + +G D V+
Sbjct: 262 ------VFSLDPQYLVDDLRPEFAGYSKAAEPHAV--SLAWSADGQ---TLFAGYTDNVI 310
Query: 194 YMWRV 198
+W+V
Sbjct: 311 RVWQV 315
>3qc2_A Glycosyl hydrolase; 5-bladed beta propeller fold, structural
genomics, joint CEN structural genomics, JCSG, protein
structure initiative; HET: PGE; 2.30A {Bacteroides
ovatus}
Length = 364
Score = 27.0 bits (59), Expect = 6.3
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 26 SGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFD 65
S D F + PV+ D ++ + C+D R+ + D
Sbjct: 91 STDGTHFQREKTPVFYPDNDSQKELEWPGGCEDPRIAVTD 130
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase,
tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR
PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A*
2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A*
2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A*
2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Length = 361
Score = 26.8 bits (58), Expect = 6.4
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 23 DMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF 82
D+A GD ++ + + P++ F + C DG +L + + + + F
Sbjct: 137 DVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMF 196
Query: 83 HAVMFNPVEARLVATANSKDGIALY 107
V+ + A + D +
Sbjct: 197 S------VKDDPIFIAPALDKDKAH 215
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 26.5 bits (58), Expect = 8.4
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 7/87 (8%)
Query: 8 KVLRVIGNDDHVIS-HDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDD----GRVL 62
L I ND + + YGL+V+P+ ++ + D G V
Sbjct: 237 DTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVY 296
Query: 63 LFDTRSREEATELAVNSGPFHAVMFNP 89
+ + + V P +
Sbjct: 297 RYSPQGKLIDE-FYVGIIPGAFC-WKL 321
>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4
Length = 157
Score = 25.8 bits (56), Expect = 9.8
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 56 CDDGRVLLFDTRSREEATE----LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK 111
+ +++ D R ++ + +++ P A+ + + A D + R
Sbjct: 28 DKNISLIIMDARRMQDYQDSCILHSLSV-PEEAISPGVTASWIEAHL-PDDSKDTWKKRG 85
Query: 112 PKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA 158
E ++ S ++ GT L L+ L T +
Sbjct: 86 NVEYVVLLDWFSSAKDLQ---IGTTLRSLKDALFKWESKTVLRNEPL 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,511,968
Number of extensions: 201968
Number of successful extensions: 907
Number of sequences better than 10.0: 1
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 225
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.7 bits)