RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11351
(224 letters)
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 51.0 bits (120), Expect = 2e-08
Identities = 27/201 (13%), Positives = 63/201 (31%), Gaps = 21/201 (10%)
Query: 18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV 77
V D+ +G E V ++V P A+ D V ++D+ + L
Sbjct: 186 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245
Query: 78 N-------SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCM---- 126
++V+F + + V + + + L++ +
Sbjct: 246 ENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 127 --------SIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFA 177
S+ + +L + + ++ +S +P+ H S + +
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364
Query: 178 GTQDEYVVSGSDDFVLYMWRV 198
G + +GS D +W+
Sbjct: 365 GPEYNVFATGSGDCKARIWKY 385
Score = 30.9 bits (68), Expect = 0.12
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 14 GNDDHVISHDMASGDPID-FYLHERPVYGLSVDPS-----QDAIFASACDDGRVLLFDTR 67
D V+ D SG+P+ H V ++V + +FA+ D + ++ +
Sbjct: 327 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 48.2 bits (113), Expect = 2e-07
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 2 ASGDPIKVLRVIGNDDHVISHDMASGDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGR 60
SG P L D + D+++G + H+ V G+ S DD
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKT 270
Query: 61 VLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYD 108
+ ++D +++ L + ++ F+ A V T S D + +++
Sbjct: 271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTG-SVDQTVKVWE 317
Score = 45.1 bits (105), Expect = 2e-06
Identities = 29/209 (13%), Positives = 68/209 (32%), Gaps = 26/209 (12%)
Query: 8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
+ D + ++ +G + + R + + AS +D V ++
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVAT------------------ANSKDG-IALYD 108
++E EL + + + P + + + S+D I ++D
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233
Query: 109 TRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-HEGYYN 167
++ G + F+ G +L +++ ++ + + HE +
Sbjct: 234 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 293
Query: 168 SCTMKSCCFAGTQDEYVVSGSDDFVLYMW 196
S YVV+GS D + +W
Sbjct: 294 SLDFHKT------APYVVTGSVDQTVKVW 316
Score = 44.3 bits (103), Expect = 5e-06
Identities = 25/164 (15%), Positives = 60/164 (36%), Gaps = 7/164 (4%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
H PV + P + SA +D + ++D + + L ++ + F+
Sbjct: 16 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL- 73
Query: 95 VATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS 154
+A+ ++ I L+D + + + +G + S+ G ++ R ++ ++
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133
Query: 155 SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV 198
V F + + + S S+D + +W V
Sbjct: 134 YCVKTFTGHREWVRMVRPNQD-----GTLIASCSNDQTVRVWVV 172
Score = 39.7 bits (91), Expect = 1e-04
Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 3/135 (2%)
Query: 5 DPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLF 64
+ + HV+ + + + E S D + ++
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232
Query: 65 DTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCE 123
D + L + V+F+ +++ + D + ++D + + +
Sbjct: 233 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC--ADDKTLRVWDYKNKRCMKTLNAHEH 290
Query: 124 SCMSIRFNKAGTQLL 138
S+ F+K ++
Sbjct: 291 FVTSLDFHKTAPYVV 305
Score = 36.3 bits (82), Expect = 0.002
Identities = 13/164 (7%), Positives = 44/164 (26%), Gaps = 16/164 (9%)
Query: 51 IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTR 110
SA D + +++ ++ + V N + L+A+ ++ + ++
Sbjct: 115 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVA 173
Query: 111 KPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCT 170
+ I + + + + + +
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233
Query: 171 MKS---------------CCFAGTQDEYVVSGSDDFVLYMWRVP 199
+ + + ++++S +DD L +W
Sbjct: 234 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 45.1 bits (105), Expect = 3e-06
Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 6/147 (4%)
Query: 51 IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLV-ATANSKDGIALYDT 109
+F S D L+D R + +A+ F P + ++ +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 110 RKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSC 169
+ S+ F+K+G LL +++ + G+ N
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNRV 315
Query: 170 TMKSCCFAGTQDEYVVSGSDDFVLYMW 196
+ V +GS D L +W
Sbjct: 316 S--CLGVT-DDGMAVATGSWDSFLKIW 339
Score = 42.0 bits (97), Expect = 2e-05
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 8/102 (7%)
Query: 12 VIGNDDHVI----SHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
G+DD + +S S + + DD ++D
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDAL 300
Query: 68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYD 108
+ A LA + + + VAT S D + +++
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTD-DGMAVATG-SWDSFLKIWN 340
Score = 35.5 bits (80), Expect = 0.003
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 3/107 (2%)
Query: 93 RLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR 152
RL + L+D R+ G +I F G L++ R
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 153 SSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP 199
+ + + H+ T S F+ + +++G DDF +W
Sbjct: 257 ADQELMTYSHDNIICGIT--SVSFSKS-GRLLLAGYDDFNCNVWDAL 300
Score = 30.9 bits (68), Expect = 0.11
Identities = 18/165 (10%), Positives = 43/165 (26%), Gaps = 4/165 (2%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
H +Y + + SA DG+++++D+ + + + + S + P
Sbjct: 54 HLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNY 111
Query: 95 VATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS 154
VA + ++Y+ + + + +
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALW 169
Query: 155 SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP 199
+ VSG+ D +W V
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Score = 26.2 bits (56), Expect = 3.2
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 148 LYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVS 206
L++ R F HE + + CF + +GSDD ++ + D ++
Sbjct: 210 LWDVREGMCRQTFTGHESD-----INAICFFPNGN-AFATGSDDATCRLFDLRADQELMT 263
Query: 207 SDIYVCRHGSLEVSILP 223
G VS
Sbjct: 264 YSHDNIICGITSVSFSK 280
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 41.3 bits (95), Expect = 5e-05
Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 6 PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFD 65
P ++ G + + +D+ I + Y ++ D D + + +F+
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKL-YLGGTFNDLAVFN 319
Query: 66 TRSREEATELAVNSGP 81
+ E+ + + G
Sbjct: 320 PDTLEKVKNIKLPGGD 335
Score = 39.0 bits (89), Expect = 2e-04
Identities = 20/176 (11%), Positives = 39/176 (22%), Gaps = 11/176 (6%)
Query: 41 GLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF-HAVMFNPVEARLVATAN 99
G ++ + + + D S + M P N
Sbjct: 1 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 59
Query: 100 SKDGIALYDTRKPKEVLM------QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS 153
I D K S S + G ++ + +
Sbjct: 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119
Query: 154 S-SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSD 208
+ F F + Y++ +DD LY+ + V +
Sbjct: 120 KPPRLEVFSTADG--LEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTG 173
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 39.9 bits (91), Expect = 1e-04
Identities = 10/124 (8%), Positives = 32/124 (25%), Gaps = 1/124 (0%)
Query: 51 IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTR 110
+ + + + + D S + + V S P + +P ++ + +++ DT
Sbjct: 4 AYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTA 62
Query: 111 KPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCT 170
+ + + +T S++
Sbjct: 63 TNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLA 122
Query: 171 MKSC 174
+
Sbjct: 123 LSPD 126
Score = 38.7 bits (88), Expect = 3e-04
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 22 HDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
D + G++V P ++ + V + DT + +AV P
Sbjct: 229 IDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288
Query: 82 F 82
+
Sbjct: 289 Y 289
Score = 32.2 bits (71), Expect = 0.044
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 12 VIGNDDHVIS-HDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR 69
+ ++ IS D+ S G + P ++ + V + DT +
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64
Score = 25.6 bits (54), Expect = 5.3
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 64 FDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
DT + + + V P + P ++ + + +++ DT
Sbjct: 229 IDTGTNKITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 39.4 bits (91), Expect = 2e-04
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 48 QDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALY 107
++ + D G++ L D + E T L H + R + + +
Sbjct: 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSA-SGRYLFVIGRDGKVNMI 88
Query: 108 D--TRKPKEVL 116
D ++P V
Sbjct: 89 DLWMKEPTTVA 99
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 39.2 bits (90), Expect = 2e-04
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 47 SQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIAL 106
+ + D G++ L D S++ + H + R + I +
Sbjct: 30 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSA-SGRYLLVIGRDARIDM 87
Query: 107 YD--TRKPKEVL 116
D ++P +V
Sbjct: 88 IDLWAKEPTKVA 99
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 39.0 bits (89), Expect = 2e-04
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSREEA 72
V+ D +G+ + + + ++V + ++A + D + + D S EE
Sbjct: 277 TASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336
Query: 73 TELA-VNSGPFHAVMFNP 89
+ + GP +
Sbjct: 337 RSVNQLGHGP-QVITTAD 353
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 38.2 bits (87), Expect = 5e-04
Identities = 9/82 (10%), Positives = 20/82 (24%), Gaps = 2/82 (2%)
Query: 52 FASACDDGRVLLFDTRSREEATELAVNSGPF--HAVMFNPVEARLVATANSKDGIALYDT 109
+ ++++ DT + + M P AT N + + D
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 110 RKPKEVLMQYGSCESCMSIRFN 131
+ + S
Sbjct: 64 VTGETLGRIDLSTPEERVKSLF 85
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 37.3 bits (85), Expect = 8e-04
Identities = 7/66 (10%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 17 DHVISHDMASGDPIDFYLHERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSREEATEL 75
++ S + G + + +A++ + ++D S ++ + +
Sbjct: 294 ENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353
Query: 76 AVNSGP 81
++ GP
Sbjct: 354 ELDKGP 359
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 36.8 bits (83), Expect = 0.001
Identities = 23/180 (12%), Positives = 52/180 (28%), Gaps = 4/180 (2%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
H V + + + DD + ++D+ +++ +L+ + G A+ + +
Sbjct: 11 HMTSVIT-CLQFEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68
Query: 95 VATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS 154
+ + + V + S C+ I K ++ R ++
Sbjct: 69 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128
Query: 155 SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRH 214
S V E Y V+ G V + + S D +
Sbjct: 129 SSVPDHGEEHDYPLVFHTPEEN--PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 186
Score = 30.6 bits (67), Expect = 0.14
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 11 RVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE 70
V D I A+ F H + ++ D I S + + +++ RS +
Sbjct: 256 LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGK 314
Query: 71 E-ATELAVNSGPFHAVMFNPVEARLVATANSKDG 103
+ ++ +V F LVA KDG
Sbjct: 315 LVHANILKDADQIWSVNFKG--KTLVAAV-EKDG 345
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 35.3 bits (79), Expect = 0.004
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 148 LYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV 198
+++ +S V ++ + + T + ++S S D L + +
Sbjct: 277 VWDVTTSKCVQKWTLDK--QQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
Score = 31.8 bits (70), Expect = 0.062
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 14 GNDDHVISHDMASGDPIDFYL---HERPVYGLSVDPSQDAIFASACDDGRVLLFD 65
G D + D+ + + + + + V + + S DG + ++
Sbjct: 270 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
Score = 29.1 bits (63), Expect = 0.36
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 51 IFASACDDGRVLLFDTRSREEATELAVNSGPF--HAVMFNPVEARLVATANSKDG-IALY 107
FA+ D + ++D + + + ++ V + + S DG + Y
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL-SLDGTLNFY 323
Query: 108 D 108
+
Sbjct: 324 E 324
Score = 26.0 bits (55), Expect = 4.7
Identities = 24/227 (10%), Positives = 57/227 (25%), Gaps = 5/227 (2%)
Query: 1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDP-SQDAIFASACDDG 59
+ SGD + V G S+ + +F + P+ +S D + D
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 60 RVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA---LYDTRKPKEVL 116
+ S E++ +S +A T + +
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199
Query: 117 MQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCF 176
+ + F+ + + + S E
Sbjct: 200 THHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258
Query: 177 AGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILP 223
+ + + D + +W V + + G+ +V ++
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 305
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 35.2 bits (79), Expect = 0.004
Identities = 18/186 (9%), Positives = 47/186 (25%), Gaps = 7/186 (3%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN---SGPFHAVMFNPVE 91
+ + + + PS+ + DG + ++ + + +L + P F
Sbjct: 10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 92 ARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPV---L 148
+ + I D + + R K G L +
Sbjct: 69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128
Query: 149 YNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSD 208
+A + K +V ++ V + +D + +
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188
Query: 209 IYVCRH 214
++
Sbjct: 189 ESGLKY 194
Score = 26.0 bits (55), Expect = 4.7
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
PV + P +A DG + ++ ++R++ A V +
Sbjct: 250 LAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIAC-SDNI 306
Query: 95 VATANSKDGIALYD 108
+ A S D
Sbjct: 307 LCLATSDDTFKTNA 320
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1
(beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 34.8 bits (78), Expect = 0.005
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNP 89
+ VY L D S D + ++D + E L ++G + ++
Sbjct: 14 TSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Score = 32.5 bits (72), Expect = 0.029
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 13/148 (8%)
Query: 54 SACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK 113
SA D + +++T + E L +G + RLV + +S + I L+D
Sbjct: 153 SASGDRTIKVWNTSTCEFVRTL---NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 209
Query: 114 EVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCT--- 170
+ + G E IRF+ +++ +++ ++ +
Sbjct: 210 CLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267
Query: 171 --MKSCCFAGTQDEYVVSGSDDFVLYMW 196
+ F +VS S D + +W
Sbjct: 268 GRVFRLQFDEF---QIVSSSHDDTILIW 292
Score = 30.2 bits (66), Expect = 0.17
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFD 65
H V+ L D Q S+ D +L++D
Sbjct: 266 HSGRVFRLQFDEFQ---IVSSSHDDTILIWD 293
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 34.8 bits (78), Expect = 0.006
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 15/110 (13%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA------VNSGPFHAV--- 85
H+ ++ +S S S DG + ++D + + V+ H V
Sbjct: 13 HDADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 86 ---MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNK 132
+ E LVAT + + Y + E + K
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 119
Score = 32.5 bits (72), Expect = 0.034
Identities = 16/162 (9%), Positives = 44/162 (27%), Gaps = 16/162 (9%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
H + + D + + A+ G +L + +E ++
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 95 VATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS 154
+ S D R L+ + +F+ + L P L
Sbjct: 125 LKWGASND-------RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL--ELQG 175
Query: 155 SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW 196
+ + + S + ++ + +G ++ + +
Sbjct: 176 TVESPMTPSQFATSVDI-------SERGLIATGFNNGTVQIS 210
Score = 26.0 bits (55), Expect = 4.6
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 34 LHERPVYGLSVDPSQDAIFASACDDGRVLLF 64
+ SVD S+ + A+ ++G V +
Sbjct: 180 PMTPSQFATSVDISERGLIATGFNNGTVQIS 210
Score = 25.2 bits (53), Expect = 9.0
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 164 GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD 202
G ++ +++ + V + S L +R+ R+D
Sbjct: 62 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRED 100
Score = 24.8 bits (52), Expect = 9.5
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 21 SHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG 80
+S + + H V LS + S + SA DG++ +D +++E T L ++
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCD 332
Query: 81 P----FHAVMFNPVEARLVATA 98
+ + L
Sbjct: 333 DIEIEEDILAVDEHGDSLAEPG 354
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 34.2 bits (76), Expect = 0.009
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH 83
H + + L+V+P S DGR++ + + S + + S
Sbjct: 12 HNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS 55
Score = 30.3 bits (66), Expect = 0.17
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 14 GNDDHVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDDGRVLLFD 65
D ++ + + I L H+ V L + + S+ D + ++
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285
Score = 24.9 bits (52), Expect = 7.9
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 174 CCFAGTQDEYVVSGSDDFVLYMWRV 198
+VS D + W V
Sbjct: 262 NNLLWETPSTLVSSGADACIKRWNV 286
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 34.1 bits (76), Expect = 0.010
Identities = 17/185 (9%), Positives = 50/185 (27%), Gaps = 7/185 (3%)
Query: 34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFD--TRSREEATELAVNSGPFHAVMFNPVE 91
P+ + + + A ++ V +++ + EL ++G V + P +
Sbjct: 5 FLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-D 62
Query: 92 ARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGL--RRRLPPVLY 149
+ + T + ++ + + + A + +
Sbjct: 63 SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122
Query: 150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDI 209
+ H T+ S + + +GS DF ++ ++
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDW-HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181
Query: 210 YVCRH 214
Sbjct: 182 TPWGS 186
Score = 31.0 bits (68), Expect = 0.10
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 16 DDHVISHDMASGDPIDFYLHERPVYGLSVDP---SQDAIFASACDDGRVLLFDTRSREEA 72
D S A+ LH+ V +SV ++ + F + DG + ++D RS E A
Sbjct: 305 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
Query: 73 TE 74
+
Sbjct: 365 LK 366
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 33.0 bits (73), Expect = 0.019
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE-ATELAVNSGPFHAVMFNP 89
H + + LS SA +G + +D + V++ +
Sbjct: 11 HNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65
Score = 27.3 bits (58), Expect = 1.7
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 148 LYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP 199
++N S + S + S + + +VS D + W VP
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSS-VNSVIW--LNETTIVSAGQDSNIKFWNVP 298
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 32.9 bits (73), Expect = 0.024
Identities = 24/193 (12%), Positives = 50/193 (25%), Gaps = 30/193 (15%)
Query: 35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNP----- 89
H+ V + + S DD + ++ + + L ++G +
Sbjct: 15 HDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72
Query: 90 ----------VEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLG 139
+ E + GS ++ + + + G L
Sbjct: 73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132
Query: 140 LRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGT-------------QDEYVVS 186
L + V V ++ ++ T +VVS
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVS 192
Query: 187 GSDDFVLYMWRVP 199
GS D + +W V
Sbjct: 193 GSLDTSIRVWDVE 205
Score = 32.5 bits (72), Expect = 0.035
Identities = 21/185 (11%), Positives = 56/185 (30%), Gaps = 11/185 (5%)
Query: 14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
D + D+ +G + + V + S D V ++D +
Sbjct: 114 SRDATLRVWDIETGQCLHVLMG--HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 171
Query: 74 ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKA 133
L ++ +++ F+ V + + I ++D + G +
Sbjct: 172 TLQGHTNRVYSLQFDG---IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-- 226
Query: 134 GTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVL 193
L+ +++ ++ + + S +V++ SDD +
Sbjct: 227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN----KNFVITSSDDGTV 282
Query: 194 YMWRV 198
+W +
Sbjct: 283 KLWDL 287
Score = 27.9 bits (60), Expect = 1.2
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 15/102 (14%)
Query: 12 VIGNDDHVI-----SHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDT 66
V GN D + H+ V L + + ++ DDG V L+D
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDL 287
Query: 67 RSREEATELAV-----NSGPFHAVMFNPVEARLVATANSKDG 103
++ E L + G + + + A S++G
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVG-SRNG 327
Score = 25.2 bits (53), Expect = 7.4
Identities = 13/123 (10%), Positives = 28/123 (22%), Gaps = 2/123 (1%)
Query: 93 RLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT 151
+ + S D + ++ K + G S + R L T
Sbjct: 28 NRIVSG-SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 86
Query: 152 RSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYV 211
+ +G++D + + + + V Y
Sbjct: 87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 146
Query: 212 CRH 214
R
Sbjct: 147 GRR 149
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 32.9 bits (73), Expect = 0.024
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 32 FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVE 91
+LHE V L F S D + + T + S + + +
Sbjct: 261 LHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-D 317
Query: 92 ARLVATANSKDG-IALYD 108
+ + T S D +Y+
Sbjct: 318 DKYIVTG-SGDKKATVYE 334
Score = 31.3 bits (69), Expect = 0.076
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 117 MQYGSCESCMSIRFNKAGTQLL--GLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSC 174
+ +S++F G + G L + T + + Q SC +
Sbjct: 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLL--NAWRTPYGASIFQSKESSSVLSCDISV- 316
Query: 175 CFAGTQDEYVVSGSDDFVLYMWRV 198
D+Y+V+GS D ++ V
Sbjct: 317 -----DDKYIVTGSGDKKATVYEV 335
Score = 28.6 bits (62), Expect = 0.59
Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 6/101 (5%)
Query: 99 NSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA 158
D + L Q+ S+ + G L + +
Sbjct: 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260
Query: 159 QFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP 199
HE S C ++ VS D +L WR P
Sbjct: 261 LHLHESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTP 295
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 32.3 bits (72), Expect = 0.036
Identities = 9/114 (7%), Positives = 27/114 (23%), Gaps = 8/114 (7%)
Query: 2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRV 61
S + + + + L + G DP +
Sbjct: 203 WSLLTDAERAEGWRPGGMQQTAVQAKQNRYYVLMHKGTDGSHKDPGTQVW-VYDLKSKQR 261
Query: 62 LLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
+ ++++ L ++ + + L + + + D R
Sbjct: 262 VARWDLAQQKVEPLV-------SIQVSEDDKPLFYGLTATSDLVVMDARTGALQ 308
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 31.8 bits (70), Expect = 0.067
Identities = 9/81 (11%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR 60
G+ + ++ +D+ + + + + L + + + DDG+
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE---VKNNLTDLRLSADRKTV-MVRKDDGK 337
Query: 61 VLLFDTRSREEATELAVNSGP 81
+ F E+ + + P
Sbjct: 338 IYTFPLEKPEDERTVETDKRP 358
Score = 27.5 bits (59), Expect = 1.4
Identities = 15/200 (7%), Positives = 45/200 (22%), Gaps = 23/200 (11%)
Query: 14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE--- 70
+ +DM Y + D + D
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDRVVLNFSF 214
Query: 71 ----EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP------KEVLMQYG 120
+ + + G + P A + + + + ++
Sbjct: 215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES 274
Query: 121 SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQ 180
S + G + + Y+ ++ ++ + +
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN--------LTDLRLSA-D 325
Query: 181 DEYVVSGSDDFVLYMWRVPR 200
+ V+ DD +Y + + +
Sbjct: 326 RKTVMVRKDDGKIYTFPLEK 345
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 29.1 bits (63), Expect = 0.44
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 51 IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYD 108
ASA D + +++ + + + V + + + + + S +G I +
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI-SANGFINFVN 309
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 28.7 bits (64), Expect = 0.52
Identities = 10/115 (8%), Positives = 26/115 (22%), Gaps = 9/115 (7%)
Query: 1 MASGDPIKVL--------RVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIF 52
+ S + + G + ++ H + +F
Sbjct: 28 VPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLF 87
Query: 53 ASACDDGRVLLFDTRSREEATELAVNSGP-FHAVMFNPVEARLVATANSKDGIAL 106
+ + RV + + + H + V N++ I
Sbjct: 88 INDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ 142
>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter
vinelandii [TaxId: 354]}
Length = 136
Score = 24.9 bits (53), Expect = 6.2
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 27 GDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE 71
G P+ LH+ P S D + + ++D RS +E
Sbjct: 1 GGPVALSLHDEPT--ASRDYLLGRL-----GAADLAIWDARSPQE 38
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase
(phosphotriesterase, DFP) {Squid (Loligo vulgaris)
[TaxId: 6622]}
Length = 314
Score = 25.0 bits (53), Expect = 8.1
Identities = 7/85 (8%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 46 PSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA 105
+ + + + +F + + + F P + T + + +
Sbjct: 234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVW 293
Query: 106 LYDTRKPKEVLMQYGSCESCMSIRF 130
++ ++ G + C +++F
Sbjct: 294 KFEWQRN-------GKKQYCETLKF 311
>d1v7wa2 b.30.5.3 (A:1-270) Chitobiose phosphorylase ChbP {Vibrio
proteolyticus [TaxId: 671]}
Length = 270
Score = 24.8 bits (54), Expect = 8.2
Identities = 8/62 (12%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 161 DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVS 220
D G Y S + + + + +Y + + ++ + I+ ++V + E+
Sbjct: 76 DDSGDYWSISWQPVAKSLDEAQYQIRHGLSYS--KFQCDYNGIHARKTLFVPKGEDAEIW 133
Query: 221 IL 222
+
Sbjct: 134 DV 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 852,866
Number of extensions: 37530
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 70
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.4 bits)