RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11352
(107 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 38.9 bits (91), Expect = 2e-05
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 53 TCFVCGKQLSNQYNLRVHMETHQNAF----YACSSCSHVSRSRDALRKHVSYRHPHISP 107
C +CG + +L H H + C C D++ H S HP +
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 33.8 bits (76), Expect = 0.003
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 53 TCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRH 102
C +C S+ +L+ H+ ++ C C S D+ HV +H
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTEHT-KVCPVCKKEFTSTDSALDHVCKKH 124
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 32.5 bits (75), Expect = 0.004
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 53 TCFVCGKQLSNQYNLRVHMETHQNAF---YACSSCSHVSRSRDALRKHVSYRH 102
C++C + + +++H+ + C C V + L H+ +H
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 32.5 bits (75), Expect = 0.006
Identities = 6/52 (11%), Positives = 14/52 (26%)
Query: 53 TCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHPH 104
C +CG++ + + H + + L V+
Sbjct: 33 ACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 28.2 bits (64), Expect = 0.18
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 53 TCFVCGKQLSNQYNLRVHMETHQNAF-YACSSCSHVSRSRDALRKH 97
C +C + S +L H+ TH +AC C D ++H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 31.2 bits (70), Expect = 0.010
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 53 TCFVCGKQLSNQYNLRVHMETHQNAF-YACSSCSHVSRSRDALRKHV 98
C CG + L+ H+ TH + Y C+ C+ +++ L KH+
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 32.9 bits (74), Expect = 0.013
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 15 SDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFA-TCFVCGKQLSNQYNLRVHMET 73
+ +S + G S C VC L + +L H+ +
Sbjct: 143 GGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS 202
Query: 74 H 74
H
Sbjct: 203 H 203
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 28.6 bits (65), Expect = 0.055
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH 74
C +CG + + L+ H+ H
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIH 34
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.9 bits (62), Expect = 0.13
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 57 CGKQLSNQYNLRVHMETH 74
C K +YN+R H++TH
Sbjct: 26 CTKTFKRRYNIRSHIQTH 43
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 28.4 bits (64), Expect = 0.15
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 57 CGKQLSNQYNLRVHMETHQ-NAFYACSSCSHVSRSRDALRKHVSYRH 102
C K+ S L+ H + H SCS V ++ KHV+ H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 0.25
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 6/59 (10%)
Query: 33 TKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSR 91
T+ S G + + TC C + +E C+ C V +
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECK---VYPPKI---VERFSEGDVVCALCGLVLSDK 55
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 28.2 bits (62), Expect = 0.30
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 53 TCFVCGKQLSNQYNLRVHMET-----HQNAFYACSSCSHVSRSRDALRKHVSYRHP 103
C C Q + H+++ N+ Y C C+ +++ DAL +H HP
Sbjct: 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP 75
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 27.9 bits (63), Expect = 0.37
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 57 CGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKH 97
C K + +R H+ TH + C+ C L++H
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRH 53
Score = 26.3 bits (59), Expect = 1.2
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH 74
C CGK L+ H H
Sbjct: 36 VCAECGKAFVESSKLKRHQLVH 57
Score = 25.6 bits (57), Expect = 2.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 57 CGKQLSNQYNLRVHMETH 74
CGK+ S +NLR H+ H
Sbjct: 70 CGKRFSLDFNLRTHVRIH 87
Score = 24.8 bits (55), Expect = 5.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 57 CGKQLSNQYNLRVHMETH 74
C K+ + NL+ H+ TH
Sbjct: 100 CNKKFAQSTNLKSHILTH 117
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 27.4 bits (62), Expect = 0.38
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH 74
C +CG++ + + H + H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 27.4 bits (62), Expect = 0.38
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH 74
C +C + S +L H+ TH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTH 57
Score = 25.5 bits (57), Expect = 2.1
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 57 CGKQLSNQYNLRVHMETH 74
C ++ S +L H+ H
Sbjct: 12 CDRRFSQSGSLTRHIRIH 29
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 26.7 bits (60), Expect = 0.46
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 53 TCFVCGKQLSNQYNLRVHMETHQNAF---YACSSCSHVSRSRDALRKH 97
C VC + ++ N H T Y C C +D + H
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
Score = 26.7 bits (60), Expect = 0.53
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH 74
C C K+ + + N+ H++
Sbjct: 42 PCPFCFKEFTRKDNMTAHVKII 63
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 27.6 bits (60), Expect = 0.48
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 36 SGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALR 95
SG++G S +K C +C +LS+ H +NA C CS S + +
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAA-VCPYCSLRFFSPELKQ 59
Query: 96 KHVS 99
+H S
Sbjct: 60 EHES 63
Score = 25.2 bits (54), Expect = 4.0
Identities = 9/51 (17%), Positives = 17/51 (33%)
Query: 52 ATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRH 102
A C C + + + H + C C +S ++ +H H
Sbjct: 43 AVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 27.5 bits (62), Expect = 0.52
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH 74
C C ++ S +L+ H TH
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTH 89
Score = 25.6 bits (57), Expect = 2.5
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 57 CGKQLSNQYNLRVHMETHQNAF-YACSSCSHVSRSRDALRKH 97
C ++ S L+ H H + C +C D L+ H
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Score = 25.6 bits (57), Expect = 2.7
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 57 CGKQLSNQYNLRVHMETH 74
C K+ +L++H H
Sbjct: 14 CNKRYFKLSHLQMHSRKH 31
Score = 25.2 bits (56), Expect = 3.1
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 57 CGKQLSNQYNLRVHMETH 74
C K+ + L H H
Sbjct: 102 CQKKFARSDELVRHHNMH 119
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 27.6 bits (62), Expect = 0.59
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH 74
C + S + L H+
Sbjct: 27 PKKSCDRTFSTMHELVTHVTME 48
Score = 27.3 bits (61), Expect = 0.70
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 45 SNHSKLFATCFVCGKQLSNQYNLRVHMETH 74
+NH + C GK +Y L H+ H
Sbjct: 56 NNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Score = 24.9 bits (55), Expect = 4.4
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 57 CGKQLSNQYNLRVHMETH 74
C ++ +N + + HM H
Sbjct: 128 CDRRFANSSDRKKHMHVH 145
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 26.7 bits (60), Expect = 0.60
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 54 CFVCGKQLSNQYNLRVHMETHQNAF-YACSSCSHVSRSRDALRKH 97
C C S++ LR+H H + C+ CS ++ L KH
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 23.6 bits (52), Expect = 7.9
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH 74
C C NL HM+
Sbjct: 39 KCNYCSFDTKQPSNLSKHMKKF 60
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 25.9 bits (58), Expect = 0.76
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 54 CFVCGKQLSNQYNLRVHMETH 74
C CG + +LR H+ H
Sbjct: 14 CETCGARFVQVAHLRAHVLIH 34
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 26.1 bits (57), Expect = 0.78
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 39 GTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAF-YACSSCS 85
G++G S K A C +CGK + Y+L H +H Y+ S
Sbjct: 1 GSSGSSGRTRKQVA-CEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 26.8 bits (60), Expect = 0.96
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 54 CFVCGKQLSNQYNLRVHMETH 74
C + QY L VHM H
Sbjct: 42 CSRELRPFKAQYMLVVHMRRH 62
Score = 25.6 bits (57), Expect = 2.8
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 57 CGKQLSNQYNLRVHMETH 74
C K+ ++ +LR H++T
Sbjct: 136 CTKRYTDPSSLRKHVKTV 153
Score = 25.2 bits (56), Expect = 3.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 57 CGKQLSNQYNLRVHMETH 74
C K S NL+ H+ +H
Sbjct: 75 CRKSYSRLENLKTHLRSH 92
Score = 24.9 bits (55), Expect = 4.7
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH 74
C ++ +Q L H+ +
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSE 26
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.4 bits (57), Expect = 1.3
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 67 LRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHPHISP 107
L+ HME + + C C RS ++ HV H +
Sbjct: 51 LKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 26.3 bits (57), Expect = 1.5
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 9 TLHFLISDHCLTSPLSSS--IPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYN 66
T+H + H + P S ++ C CG + +
Sbjct: 36 TVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQD 95
Query: 67 LRVHMETHQ 75
L VHM +
Sbjct: 96 LSVHMIKTK 104
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 26.0 bits (58), Expect = 1.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 53 TCFVCGKQLSNQYNLRVHMETHQN 76
C VC + S +L +HM+ HQN
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRHQN 100
Score = 24.1 bits (53), Expect = 8.3
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 57 CGKQLSNQYNLRVHMETHQNAF-YACSSCSHV-SRSRDALRKHV 98
C + + L H H A + C C+ SRS D L H+
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRS-DHLALHM 95
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 25.3 bits (54), Expect = 1.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 28 PGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHME 72
P + + K S + S+ ATC +C + NLR H+E
Sbjct: 1 PKAKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLE 45
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 25.9 bits (58), Expect = 2.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 53 TCFVCGKQLSNQYNLRVHMETHQNAF-YACSSCSHVSRSRDALRKH 97
TC VC + + LR+HM +H Y CSSCS + L+ H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 25.2 bits (56), Expect = 3.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH 74
C C K+ ++Y L+VH H
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKH 30
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 25.6 bits (57), Expect = 2.2
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH-----QNAFYACSSCSHVSRSRDALRKH 97
C C K + L +H + + A + CS C R+ + +H
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 25.6 bits (57), Expect = 2.9
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 57 CGKQLSNQYNLRVHMETHQ-NAFYACSSCSHVSRSRDALRKHVSYRH 102
C K+ S L+ H + H SCS V ++ KHV+ H
Sbjct: 142 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 25.9 bits (56), Expect = 3.6
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 20 TSPLSSSIPGSSKTKASGSG-----TTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMET 73
T P S SI + + + + + C VC + S L H+ +
Sbjct: 80 TRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRS 138
Score = 24.8 bits (53), Expect = 7.4
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 71 METHQNAFYACSSCSHVSRSRDALRKHVSYRH 102
+ Y C+ C+ + AL +H+ H
Sbjct: 109 TPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 24.8 bits (55), Expect = 3.6
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH---QNAFYACSSCSHVSRSRDALRKH 97
+C VCG + + + H+ +H Y C SC D L H
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
Score = 24.8 bits (55), Expect = 3.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH 74
C +CGK + Y+L H +H
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSH 30
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.5 bits (50), Expect = 4.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 43 GSSNHSKLFATCFVCGKQLSNQYNLRVHMETH 74
GSS S L C +C ++ N+ + HM H
Sbjct: 1 GSSGSSGLLYDCHICERKFKNELDRDRHMLVH 32
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 23.6 bits (52), Expect = 4.4
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 43 GSSNHS--KLFATCFVCGKQLSNQYNLRVHMETH 74
GSS S K F C C K S++ L VH +TH
Sbjct: 1 GSSGSSGEKPFG-CSCCEKAFSSKSYLLVHQQTH 33
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics,
unknown function; HET: MSE; 1.90A {Neisseria
meningitidis} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 25.3 bits (56), Expect = 4.5
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 5 YKPSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSS 45
+ S FL LT ++I + +A S TTGG+S
Sbjct: 290 WSCSGQPFLTQAGKLTDVARAAIAETCGIEAELS-TTGGTS 329
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 24.7 bits (55), Expect = 4.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 54 CFVCGKQLSNQYNLRVHMETH 74
C VCGK S + L+ HM H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCH 31
Score = 23.9 bits (53), Expect = 7.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 54 CFVCGKQLSNQYNLRVHMETH 74
C +C N L VH+ +H
Sbjct: 67 CQICPYASRNSSQLTVHLRSH 87
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm,
hydrolase, nonsense-mediated mRNA decay, nucleus,
polymorphism, structural genomics; HET: DD2; 1.80A {Homo
sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Length = 301
Score = 25.3 bits (55), Expect = 4.6
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 3 FHYKPSTLHFLISDHCLTSPLSSSIPGSSKTKA 35
HY PS H H + L PGS +A
Sbjct: 231 LHYLPSYYHL----HVHFTALGFEAPGSGVERA 259
>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 111
Score = 24.8 bits (54), Expect = 4.8
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 21 SPLSSSIPGSSKTKASGSGTTGGSSNHSKLF 51
S SS S A G G + G N F
Sbjct: 2 SSGSSGAINSRHVSAYGPGLSHGMVNKPATF 32
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 23.4 bits (51), Expect = 5.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 53 TCFVCGKQLSNQYNLRVHMETH 74
C CGK + + +L VH +
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSC 34
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 5.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 54 CFVCGKQLSNQYNLRVHMETH 74
C CG S +L H+ +H
Sbjct: 15 CKECGMNFSWSCSLFKHLRSH 35
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 24.0 bits (53), Expect = 5.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 54 CFVCGKQLSNQYNLRVHMETH 74
C +CG Q + NL+ H H
Sbjct: 48 CNICGAQFNRPANLKTHTRIH 68
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 24.9 bits (55), Expect = 6.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 18 CLTSPLSSSIPGSSKTKASGSGTTGG 43
LT P S S P S +T+A + +
Sbjct: 132 GLTEPNSGSDPSSMETRAHYNSSNKS 157
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB:
1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z*
1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z*
1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Length = 83
Score = 24.0 bits (52), Expect = 7.5
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 71 METHQNAFYACSSCSHVSRSRDA 93
+E+ N +AC +C R
Sbjct: 20 IESEMNEDHACPNCGEDRVDRQG 42
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 22.9 bits (50), Expect = 9.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 54 CFVCGKQLSNQYNLRVHMETH 74
C CGK S + +L VH+ H
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVH 34
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 9.1
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 54 CFVCGKQLSNQYNLRVHMETH 74
C CGK + + L +H ++H
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSH 35
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 23.8 bits (51), Expect = 9.2
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 54 CFVCGKQLSNQYNLRVHMETH 74
C GK +Y L H+ H
Sbjct: 65 CPREGKSFKAKYKLVNHIRVH 85
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc
binding, structural genomics, PSI; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Length = 55
Score = 23.1 bits (50), Expect = 9.3
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 54 CFVCGKQLSNQYN 66
C CGK +S +N
Sbjct: 6 CLSCGKPVSAYFN 18
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.127 0.395
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,506,946
Number of extensions: 68226
Number of successful extensions: 530
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 212
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)