BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11353
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 35 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
L D T G H KAHK VL+ACS YFK LF
Sbjct: 25 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF 55
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 35 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
L D T G H KAHK VL+ACS YFK LF
Sbjct: 27 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF 57
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 7 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
GS C+++ + + +L L +L + LTDV + +AHK VL ACS F +F
Sbjct: 4 GSADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIF 62
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM I
Length = 124
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 18 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAEIT 75
Y SLL +L + DVT+ R +AHK +LSA S YF QLF V+ E++
Sbjct: 16 YSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELS 73
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 18 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAEIT 75
Y SLL +L + DVT+ R +AHK +LSA S YF QLF V+ E++
Sbjct: 14 YSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELS 71
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 35 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
L DV + GR H+ VL+ACS YFK+LF
Sbjct: 25 LCDVVILVEGREFPTHRSVLAACSQYFKKLF 55
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 35 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
L DV + GR H+ VL+ACS YFK+LF
Sbjct: 35 LCDVVILVEGREFPTHRSVLAACSQYFKKLF 65
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 5 LDGSQQFCLRWHNYQTSLLATL-PQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQ 63
L +Q + N+ S+L L Q L G DV++ G KAH+ VL+A S YF+
Sbjct: 3 LGSAQTLQMEIPNFGNSILECLNEQRLQGL-YCDVSVVVKGHAFKAHRAVLAASSSYFRD 61
Query: 64 LFKVSKSSA 72
LF S+S+
Sbjct: 62 LFNNSRSAV 70
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 18 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAEIT 75
+ T++L +L + L DVT+ G+ +AH+ VL+ACS YF V ++ AE+T
Sbjct: 19 HSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRI-VGQTDAELT 75
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
Length = 124
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 18 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYF 61
+ T++L +L + L DVT+ G+ +AH+ VL+ACS YF
Sbjct: 12 HSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYF 55
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
A Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
A Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 7 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
GS +++ + + +L L +L + LTDV + +AHK VL ACS F +F
Sbjct: 1 GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIF 59
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 20 TSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQ 63
T++L L + L DVTL + +AH+ VL+ACS YF Q
Sbjct: 17 TNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQ 60
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 37 DVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
D TL GG KAH VL+ CSH+F++++
Sbjct: 27 DATLDVGGLVFKAHWSVLACCSHFFQRIY 55
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The
Krueppel Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 37 DVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
D TL GG KAH VL+ CSH+F+ L+
Sbjct: 26 DATLDVGGLVFKAHWSVLACCSHFFQSLY 54
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human
Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human
Klhl11
Length = 279
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 37 DVTL---SAGGRHMKAHKVVLSACSHYFKQLF 65
D+TL AGGR +AH+ VL+A + YF L
Sbjct: 34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLL 65
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At
2.8a Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At
3.1a Resolution
Length = 297
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 37 DVTL---SAGGRHMKAHKVVLSACSHYFKQLF 65
D+TL AGGR +AH+ VL+A + YF L
Sbjct: 52 DITLCFGGAGGREFRAHRSVLAAATEYFTPLL 83
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 19 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
+ L L L + TD L G+ +AHK +L+A S F +F+
Sbjct: 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 56
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 29 LLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
L + TD L G+ +AHK +L+A S F +F+
Sbjct: 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 205
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 22 LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
LL L + + L D T+ G KAH+ VL++ S YF +++
Sbjct: 9 LLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYR 53
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 19 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
+ L L L + TD L G+ +AHK +L+A S F F+
Sbjct: 18 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFE 65
>pdb|2V2L|A Chain A, Mutant (E53,56,57,60q) Recombinant Horse Spleen
Apoferritin Cocrystallized With Haemin In Acidic
Conditions
pdb|2V2M|A Chain A, Mutant (E53,56,57,60q) Recombinant Horse Spleen
Apoferritin Cocrystallized With Haemin In Basic
Conditions
Length = 174
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 17 NYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAE 73
NY T + A + +L++ T + G + V L H+F+QL + + AE
Sbjct: 7 NYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKRQGAE 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,153,800
Number of Sequences: 62578
Number of extensions: 63806
Number of successful extensions: 177
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 21
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)