Query psy11353
Match_columns 76
No_of_seqs 112 out of 1054
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 16:14:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohu_A Transcription regulator 99.8 3.8E-19 1.3E-23 106.0 5.1 66 5-70 2-67 (125)
2 2z8h_A Transcription regulator 99.8 3.5E-19 1.2E-23 108.1 4.5 64 7-70 8-71 (138)
3 2ihc_A Transcription regulator 99.8 6.4E-19 2.2E-23 105.2 4.2 61 9-69 3-63 (124)
4 3b84_A Zinc finger and BTB dom 99.7 4.9E-19 1.7E-23 105.1 2.9 57 13-69 2-58 (119)
5 3fkc_A Transcriptional regulat 99.7 7.9E-19 2.7E-23 104.1 3.5 63 8-70 4-66 (116)
6 1r29_A B-cell lymphoma 6 prote 99.7 2.1E-18 7.1E-23 103.0 4.4 61 10-70 4-64 (127)
7 3ga1_A Nucleus accumbens-assoc 99.7 1.6E-18 5.6E-23 103.9 3.9 62 7-68 5-66 (129)
8 1buo_A POZ domain, protein (pr 99.7 1E-18 3.6E-23 103.8 3.0 60 11-70 4-63 (121)
9 2if5_A Zinc finger and BTB dom 99.7 2.1E-18 7.3E-23 102.0 3.9 56 13-68 3-58 (120)
10 2q81_A MIZ-1 protein; BTB/POZ 99.7 1.4E-18 4.7E-23 103.1 2.4 59 12-70 4-62 (119)
11 2ppi_A Gigaxonin; BTB domain, 99.7 4.9E-18 1.7E-22 104.0 3.3 60 9-68 21-80 (144)
12 2yy9_A Zinc finger and BTB dom 99.7 5.9E-18 2E-22 102.5 3.5 56 14-69 4-59 (135)
13 2vpk_A Myoneurin; transcriptio 99.7 6.6E-18 2.3E-22 99.5 2.9 53 16-68 3-55 (116)
14 3hve_A Gigaxonin; ubiquitin, c 99.6 1E-16 3.5E-21 104.9 3.1 59 11-69 7-65 (256)
15 3i3n_A Kelch-like protein 11; 99.6 1.9E-16 6.5E-21 104.9 1.9 58 11-68 8-68 (279)
16 3htm_A Speckle-type POZ protei 99.5 1.7E-15 5.9E-20 93.5 1.3 52 18-69 17-68 (172)
17 4eoz_A Speckle-type POZ protei 99.5 7.8E-15 2.7E-19 88.4 2.6 50 19-68 9-58 (145)
18 2vkp_A BTB/POZ domain-containi 99.5 1.1E-14 3.6E-19 84.5 1.4 41 29-69 2-46 (109)
19 3m5b_A Zinc finger and BTB dom 99.5 1.7E-14 5.8E-19 85.9 2.0 50 12-63 9-58 (119)
20 3hqi_A Speckle-type POZ protei 99.3 3.7E-13 1.2E-17 90.0 3.4 49 20-68 159-207 (312)
21 4ajy_C Transcription elongatio 97.6 2.4E-05 8.2E-10 44.6 2.1 29 38-67 4-33 (97)
22 2ast_A S-phase kinase-associat 97.2 0.00015 5E-09 44.6 1.8 29 38-67 3-32 (159)
23 1fs1_B SKP1, cyclin A/CDK2-ass 95.4 0.0096 3.3E-07 35.8 2.5 29 38-67 4-33 (141)
24 2p1m_A SKP1-like protein 1A; F 94.2 0.002 6.9E-08 39.6 -2.8 30 38-68 6-36 (160)
25 1hv2_A Elongin C, ELC1; protei 93.1 0.065 2.2E-06 30.3 2.5 29 38-67 6-35 (99)
26 2fnj_C Transcription elongatio 93.0 0.05 1.7E-06 30.6 1.9 29 38-67 3-32 (96)
27 3drz_A BTB/POZ domain-containi 79.7 1.2 4.2E-05 25.2 2.3 31 38-68 8-39 (107)
28 1vcb_B Protein (elongin C); tu 69.0 2.3 8E-05 24.4 1.6 30 37-67 18-48 (112)
29 3v7d_A Suppressor of kinetocho 68.1 2.8 9.6E-05 25.6 1.9 30 37-67 8-38 (169)
30 3iml_A S-adenosylmethionine sy 42.7 65 0.0022 22.6 5.4 41 17-57 147-196 (399)
31 3s82_A S-adenosylmethionine sy 42.1 62 0.0021 22.8 5.3 41 17-57 159-208 (407)
32 1o6d_A Hypothetical UPF0247 pr 33.9 36 0.0012 20.8 2.8 24 19-44 80-103 (163)
33 3drx_A BTB/POZ domain-containi 33.0 28 0.00096 22.1 2.3 31 38-68 14-45 (202)
34 1ns5_A Hypothetical protein YB 31.8 36 0.0012 20.6 2.6 24 19-44 81-104 (155)
35 2jvf_A De novo protein M7; tet 30.0 45 0.0015 18.0 2.5 33 16-48 59-91 (96)
36 2p02_A S-adenosylmethionine sy 27.6 1.3E+02 0.0045 21.1 5.0 42 16-57 155-209 (396)
37 1p7l_A S-adenosylmethionine sy 26.4 1.5E+02 0.0052 20.7 5.2 43 15-57 137-188 (383)
38 2g2c_A Putative molybdenum cof 23.0 1.1E+02 0.0037 18.1 3.6 29 15-45 51-79 (167)
39 1to0_A Hypothetical UPF0247 pr 21.8 1.4E+02 0.0049 18.1 4.0 25 19-44 85-109 (167)
40 3so4_A Methionine-adenosyltran 20.8 1.2E+02 0.0039 21.5 3.7 41 17-57 160-213 (415)
No 1
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.77 E-value=3.8e-19 Score=106.01 Aligned_cols=66 Identities=30% Similarity=0.361 Sum_probs=59.8
Q ss_pred CCCccceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353 5 LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS 70 (76)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~ 70 (76)
+.....+.+.++.|...+++.|+++++++.+|||+|.|+|+.|+|||.|||++|+||++||.+...
T Consensus 2 p~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~ 67 (125)
T 3ohu_A 2 PLGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTK 67 (125)
T ss_dssp CBSCCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCC
T ss_pred CCCCcceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCC
Confidence 345566777999999999999999999999999999999999999999999999999999987543
No 2
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.76 E-value=3.5e-19 Score=108.06 Aligned_cols=64 Identities=30% Similarity=0.416 Sum_probs=59.0
Q ss_pred CccceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353 7 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS 70 (76)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~ 70 (76)
+...+.+.++.|+..+++.|+++++++.+|||+|.++|+.|+|||+|||++|+||++||.+...
T Consensus 8 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~ 71 (138)
T 2z8h_A 8 ESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTD 71 (138)
T ss_dssp TTCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCC
T ss_pred CCCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCC
Confidence 4466778999999999999999999999999999999999999999999999999999987643
No 3
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.75 E-value=6.4e-19 Score=105.23 Aligned_cols=61 Identities=30% Similarity=0.427 Sum_probs=56.8
Q ss_pred cceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCC
Q psy11353 9 QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK 69 (76)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~ 69 (76)
..+.++++.|+..+++.|+++++++.+|||+|.++|+.|+|||.|||++|+||++||.+..
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~ 63 (124)
T 2ihc_A 3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQA 63 (124)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC-
T ss_pred ceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCC
Confidence 4567889999999999999999999999999999999999999999999999999998764
No 4
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.74 E-value=4.9e-19 Score=105.09 Aligned_cols=57 Identities=30% Similarity=0.515 Sum_probs=53.9
Q ss_pred eeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCC
Q psy11353 13 LRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK 69 (76)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~ 69 (76)
.+|+.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++.
T Consensus 2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~ 58 (119)
T 3b84_A 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS 58 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT
T ss_pred cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC
Confidence 468899999999999999999999999999999999999999999999999998754
No 5
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.74 E-value=7.9e-19 Score=104.08 Aligned_cols=63 Identities=35% Similarity=0.440 Sum_probs=57.6
Q ss_pred ccceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353 8 SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS 70 (76)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~ 70 (76)
++...+.+++|...+++.++++++++.+|||+|.++|+.|+|||.|||++|+||++||.++..
T Consensus 4 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~~~ 66 (116)
T 3fkc_A 4 RKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQ 66 (116)
T ss_dssp CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSCCS
T ss_pred CceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCCCC
Confidence 345566899999999999999999999999999999999999999999999999999987643
No 6
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.73 E-value=2.1e-18 Score=103.01 Aligned_cols=61 Identities=28% Similarity=0.425 Sum_probs=55.8
Q ss_pred ceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353 10 QFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS 70 (76)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~ 70 (76)
...+.++.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+...
T Consensus 4 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~ 64 (127)
T 1r29_A 4 DSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK 64 (127)
T ss_dssp -CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTT
T ss_pred CccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCcc
Confidence 3456889999999999999999999999999999999999999999999999999987543
No 7
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.6e-18 Score=103.93 Aligned_cols=62 Identities=32% Similarity=0.467 Sum_probs=57.2
Q ss_pred CccceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353 7 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS 68 (76)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~ 68 (76)
....+.++++.|...+++.|+++++++.+|||+|.|+|+.|+|||.||+++|+||++||.+.
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~ 66 (129)
T 3ga1_A 5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS 66 (129)
T ss_dssp --CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC
T ss_pred CCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC
Confidence 34677889999999999999999999999999999999999999999999999999999764
No 8
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.73 E-value=1e-18 Score=103.81 Aligned_cols=60 Identities=27% Similarity=0.353 Sum_probs=55.6
Q ss_pred eEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353 11 FCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS 70 (76)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~ 70 (76)
+.+.++.|+..+++.++++++++.+|||+|.++|+.|+|||.||+++|+||++||.++..
T Consensus 4 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~ 63 (121)
T 1buo_A 4 IQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQ 63 (121)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCCS
T ss_pred eeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCCCc
Confidence 346788999999999999999999999999999999999999999999999999987643
No 9
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.73 E-value=2.1e-18 Score=101.98 Aligned_cols=56 Identities=32% Similarity=0.578 Sum_probs=53.1
Q ss_pred eeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353 13 LRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS 68 (76)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~ 68 (76)
.+|+.|+..+++.++++++++.+|||+|.++|+.|+|||.||+++|+||++||.++
T Consensus 3 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~ 58 (120)
T 2if5_A 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSG 58 (120)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-
T ss_pred cCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCC
Confidence 57889999999999999999999999999999999999999999999999999865
No 10
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.72 E-value=1.4e-18 Score=103.14 Aligned_cols=59 Identities=39% Similarity=0.495 Sum_probs=54.0
Q ss_pred EeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353 12 CLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS 70 (76)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~ 70 (76)
..+++.|...+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.+...
T Consensus 4 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~~ 62 (119)
T 2q81_A 4 GSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD 62 (119)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCCS
T ss_pred ccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCCCC
Confidence 34678899999999999999999999999999999999999999999999999987543
No 11
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.70 E-value=4.9e-18 Score=103.99 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=54.3
Q ss_pred cceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353 9 QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS 68 (76)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~ 68 (76)
+.+.+.++.|+..+++.|+++++++.+|||+|.++|+.|+|||+|||++|+||++||.++
T Consensus 21 ~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~ 80 (144)
T 2ppi_A 21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYN 80 (144)
T ss_dssp CCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC
T ss_pred eeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCC
Confidence 456678999999999999999999999999999999999999999999999999999754
No 12
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.70 E-value=5.9e-18 Score=102.48 Aligned_cols=56 Identities=29% Similarity=0.471 Sum_probs=49.3
Q ss_pred eccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCC
Q psy11353 14 RWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK 69 (76)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~ 69 (76)
.++.|...+++.|+++|+++.+|||+|.|+|+.|+|||.||+++|+||++||.+..
T Consensus 4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~ 59 (135)
T 2yy9_A 4 GSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT 59 (135)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC---
T ss_pred ccccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC
Confidence 56789999999999999999999999999999999999999999999999998653
No 13
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.69 E-value=6.6e-18 Score=99.46 Aligned_cols=53 Identities=28% Similarity=0.427 Sum_probs=50.7
Q ss_pred cchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353 16 HNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS 68 (76)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~ 68 (76)
+.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+.
T Consensus 3 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~ 55 (116)
T 2vpk_A 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST 55 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC
Confidence 56899999999999999999999999999999999999999999999999875
No 14
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.63 E-value=1e-16 Score=104.93 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=49.1
Q ss_pred eEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCC
Q psy11353 11 FCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK 69 (76)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~ 69 (76)
..+.++.|+..+++.++.++.++.+|||+|.|+|+.|+|||+||+++|+||++||.++.
T Consensus 7 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~ 65 (256)
T 3hve_A 7 SAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNP 65 (256)
T ss_dssp ---CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC----
T ss_pred CccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCC
Confidence 44578889999999999999999999999999999999999999999999999997643
No 15
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.59 E-value=1.9e-16 Score=104.86 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=53.1
Q ss_pred eEeeccchHHHHHHHHHHhhcCCCCeeEEEEeC---CeEEEeEeEEecccCHHHHHhhcCC
Q psy11353 11 FCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAG---GRHMKAHKVVLSACSHYFKQLFKVS 68 (76)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~---g~~~~aHr~vLa~~S~~F~~~f~~~ 68 (76)
..+.++.|+..+++.|+.+|+++.+|||+|.|+ |+.|+|||+|||++|+||++||.++
T Consensus 8 ~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~ 68 (279)
T 3i3n_A 8 EDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQ 68 (279)
T ss_dssp EEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC-
T ss_pred cCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCC
Confidence 456888999999999999999999999999998 9999999999999999999999865
No 16
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.52 E-value=1.7e-15 Score=93.54 Aligned_cols=52 Identities=29% Similarity=0.436 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCC
Q psy11353 18 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK 69 (76)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~ 69 (76)
.+..+...++.+++++.+|||+|.++|+.|+|||.||+++|+||++||.+..
T Consensus 17 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~ 68 (172)
T 3htm_A 17 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEM 68 (172)
T ss_dssp CCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCc
Confidence 3467889999999999999999999999999999999999999999998653
No 17
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.49 E-value=7.8e-15 Score=88.41 Aligned_cols=50 Identities=30% Similarity=0.483 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353 19 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS 68 (76)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~ 68 (76)
+..+.+.++.+++++.+|||+|.++|+.|+|||.||+++|+||++||.+.
T Consensus 9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~ 58 (145)
T 4eoz_A 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHE 58 (145)
T ss_dssp CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSS
T ss_pred hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCC
Confidence 35688899999999999999999999999999999999999999999865
No 18
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.46 E-value=1.1e-14 Score=84.48 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=36.3
Q ss_pred hhcCCCCeeEEEEeCC----eEEEeEeEEecccCHHHHHhhcCCC
Q psy11353 29 LLDGEDLTDVTLSAGG----RHMKAHKVVLSACSHYFKQLFKVSK 69 (76)
Q Consensus 29 ~~~~~~~~Dv~l~v~g----~~~~aHr~vLa~~S~~F~~~f~~~~ 69 (76)
+++++.+|||+|.++| +.|+|||.||+++|+||++||.+..
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~ 46 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDL 46 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCc
Confidence 6788999999999998 8999999999999999999998653
No 19
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.45 E-value=1.7e-14 Score=85.91 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=43.2
Q ss_pred EeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHH
Q psy11353 12 CLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQ 63 (76)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~ 63 (76)
....+.+...+++.++ |.++.+|||+|.|+|+.|+|||+|||++|+||++
T Consensus 9 ~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~ 58 (119)
T 3m5b_A 9 RLPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR 58 (119)
T ss_dssp EECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC
T ss_pred CCCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc
Confidence 3445556788888886 6779999999999999999999999999999985
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.35 E-value=3.7e-13 Score=90.03 Aligned_cols=49 Identities=31% Similarity=0.481 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353 20 TSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS 68 (76)
Q Consensus 20 ~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~ 68 (76)
..+.+.+..++.++.++||+|.|+|+.|+|||.|||++|+||++||.+.
T Consensus 159 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~ 207 (312)
T 3hqi_A 159 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHE 207 (312)
T ss_dssp CCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-
T ss_pred chHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccC
Confidence 4688889999999999999999999999999999999999999999764
No 21
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=97.63 E-value=2.4e-05 Score=44.60 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.6
Q ss_pred EEEEe-CCeEEEeEeEEecccCHHHHHhhcC
Q psy11353 38 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKV 67 (76)
Q Consensus 38 v~l~v-~g~~~~aHr~vLa~~S~~F~~~f~~ 67 (76)
|+|+. +|++|.+||.| |.+|+||++||.+
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~ 33 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSG 33 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHh
Confidence 56654 78999999999 9999999999986
No 22
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=97.16 E-value=0.00015 Score=44.60 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=26.2
Q ss_pred EEEEe-CCeEEEeEeEEecccCHHHHHhhcC
Q psy11353 38 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKV 67 (76)
Q Consensus 38 v~l~v-~g~~~~aHr~vLa~~S~~F~~~f~~ 67 (76)
|+|+. +|+.|.+||.| |++|+||++||.+
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~ 32 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLED 32 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTS
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHh
Confidence 77765 79999999999 9999999999976
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=95.38 E-value=0.0096 Score=35.78 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=25.7
Q ss_pred EEEEe-CCeEEEeEeEEecccCHHHHHhhcC
Q psy11353 38 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKV 67 (76)
Q Consensus 38 v~l~v-~g~~~~aHr~vLa~~S~~F~~~f~~ 67 (76)
|+|+. +|+.|.+|+.+ |..|.+++.||..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~ 33 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLED 33 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHH
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHh
Confidence 67766 88999999998 8999999999975
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=94.21 E-value=0.002 Score=39.59 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=12.3
Q ss_pred EEEEe-CCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353 38 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKVS 68 (76)
Q Consensus 38 v~l~v-~g~~~~aHr~vLa~~S~~F~~~f~~~ 68 (76)
|+|+. +|..|.+|+.+ |..|++|+.||...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~ 36 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDD 36 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHcc
Confidence 66664 79999999998 89999999999764
No 25
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=93.07 E-value=0.065 Score=30.34 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=25.7
Q ss_pred EEEEe-CCeEEEeEeEEecccCHHHHHhhcC
Q psy11353 38 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKV 67 (76)
Q Consensus 38 v~l~v-~g~~~~aHr~vLa~~S~~F~~~f~~ 67 (76)
|+|+. +|..|.+++.+ |..|.+++.||..
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~ 35 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEG 35 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHS
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhc
Confidence 67766 89999999997 8999999999976
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=92.98 E-value=0.05 Score=30.64 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.3
Q ss_pred EEEEe-CCeEEEeEeEEecccCHHHHHhhcC
Q psy11353 38 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKV 67 (76)
Q Consensus 38 v~l~v-~g~~~~aHr~vLa~~S~~F~~~f~~ 67 (76)
|+|+. +|..|.+++.+ |..|.+++.||..
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~ 32 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSG 32 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHc
Confidence 56765 88999999997 8999999999975
No 27
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=79.73 E-value=1.2 Score=25.16 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=26.3
Q ss_pred EEEEeCCeEEEeEeEEecccC-HHHHHhhcCC
Q psy11353 38 VTLSAGGRHMKAHKVVLSACS-HYFKQLFKVS 68 (76)
Q Consensus 38 v~l~v~g~~~~aHr~vLa~~S-~~F~~~f~~~ 68 (76)
|+|-|||+.|...+..|+... .+|.+||...
T Consensus 8 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~ 39 (107)
T 3drz_A 8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQAD 39 (107)
T ss_dssp EEEEETTEEEEEEHHHHTSSTTSHHHHHHTTC
T ss_pred EEEEECCEEEEECHHHHhcCCCcchhHHHhcC
Confidence 778999999999999999875 4788888754
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=68.96 E-value=2.3 Score=24.36 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=25.1
Q ss_pred eEEEE-eCCeEEEeEeEEecccCHHHHHhhcC
Q psy11353 37 DVTLS-AGGRHMKAHKVVLSACSHYFKQLFKV 67 (76)
Q Consensus 37 Dv~l~-v~g~~~~aHr~vLa~~S~~F~~~f~~ 67 (76)
-|+|+ .+|..|.+.+. +|..|..++.|+..
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~ 48 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSG 48 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHh
Confidence 37776 58899999999 57889999999975
No 29
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=68.13 E-value=2.8 Score=25.63 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=25.0
Q ss_pred eEEEEe-CCeEEEeEeEEecccCHHHHHhhcC
Q psy11353 37 DVTLSA-GGRHMKAHKVVLSACSHYFKQLFKV 67 (76)
Q Consensus 37 Dv~l~v-~g~~~~aHr~vLa~~S~~F~~~f~~ 67 (76)
-|+|+. +|..|.+++.+ |..|..++.|+..
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~ 38 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLND 38 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHh
Confidence 466755 78999999997 7889999999964
No 30
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=42.66 E-value=65 Score=22.63 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHhhcCCCC----ee----EEEEe-CCeEEEeEeEEeccc
Q psy11353 17 NYQTSLLATLPQLLDGEDL----TD----VTLSA-GGRHMKAHKVVLSAC 57 (76)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~----~D----v~l~v-~g~~~~aHr~vLa~~ 57 (76)
.....|.+.|.++|+++.+ .| ||+.- +|+....|.+|+++.
T Consensus 147 ~lAH~L~~rl~~~Rk~g~l~~LrPD~KtQVTveY~~~~P~rv~tvViStQ 196 (399)
T 3iml_A 147 HLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYVDGKPHSIDTVVLSTQ 196 (399)
T ss_dssp HHHHHHHHHHHHHHHTTSSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCeecCCCceEEEEEEECCceeeEEEEEEEee
Confidence 4577888899999998754 34 66643 578899999999875
No 31
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=42.13 E-value=62 Score=22.80 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHhhcCCCC----ee----EEEEe-CCeEEEeEeEEeccc
Q psy11353 17 NYQTSLLATLPQLLDGEDL----TD----VTLSA-GGRHMKAHKVVLSAC 57 (76)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~----~D----v~l~v-~g~~~~aHr~vLa~~ 57 (76)
.....|.+.|.++|+++.+ .| ||+.- +|+....|.+|+++.
T Consensus 159 ~lAH~L~~rla~~Rk~g~l~~LrPD~KtQVTveY~~~~P~rv~tvViStQ 208 (407)
T 3s82_A 159 ALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIEFEDDVPVRLDTVVISTQ 208 (407)
T ss_dssp HHHHHHHHHHHHHHHTSSSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCeecCCCceEEEEEEECCceeeEEEEEEEee
Confidence 3577888899999998754 34 66643 678899999999875
No 32
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=33.88 E-value=36 Score=20.78 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcCCCCeeEEEEeCC
Q psy11353 19 QTSLLATLPQLLDGEDLTDVTLSAGG 44 (76)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~Dv~l~v~g 44 (76)
...+.+.|.+++.+| .|++|++||
T Consensus 80 S~~fA~~l~~~~~~G--~~i~FvIGG 103 (163)
T 1o6d_A 80 SEEFADFLKDLEMKG--KDITILIGG 103 (163)
T ss_dssp HHHHHHHHHHHHHHT--CCEEEEECC
T ss_pred HHHHHHHHHHHHhcC--CeEEEEEEC
Confidence 466777788887777 699999988
No 33
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=33.04 E-value=28 Score=22.07 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=25.2
Q ss_pred EEEEeCCeEEEeEeEEecccC-HHHHHhhcCC
Q psy11353 38 VTLSAGGRHMKAHKVVLSACS-HYFKQLFKVS 68 (76)
Q Consensus 38 v~l~v~g~~~~aHr~vLa~~S-~~F~~~f~~~ 68 (76)
|+|-|||+.|...+..|...- .+|.+||...
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~ 45 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQAD 45 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCC
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCc
Confidence 677999999999999998764 4778888654
No 34
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=31.79 E-value=36 Score=20.55 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhcCCCCeeEEEEeCC
Q psy11353 19 QTSLLATLPQLLDGEDLTDVTLSAGG 44 (76)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~Dv~l~v~g 44 (76)
...+.+.|.+++.+| .|++|++||
T Consensus 81 S~~fA~~l~~~~~~g--~~i~FvIGG 104 (155)
T 1ns5_A 81 TPQLAAELERWKLDG--RDVSLLIGG 104 (155)
T ss_dssp HHHHHHHHHHHHHHC--SCEEEEECB
T ss_pred HHHHHHHHHHHHhcC--CeEEEEEEC
Confidence 456667777777777 699999988
No 35
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=30.04 E-value=45 Score=18.04 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=26.0
Q ss_pred cchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEE
Q psy11353 16 HNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMK 48 (76)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~ 48 (76)
.....+++..+..+.+.--|-|+.+.|+|.+.+
T Consensus 59 deqakelleliarllqklgykdinvrvngtevk 91 (96)
T 2jvf_A 59 DEQAKELLELIARLLQKLGYKDINVRVNGTEVK 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEEETTEEE
T ss_pred hHHHHHHHHHHHHHHHHhCCCceEEEEcCEEEE
Confidence 345677888888888777788999999997655
No 36
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=27.63 E-value=1.3e+02 Score=21.07 Aligned_cols=42 Identities=29% Similarity=0.344 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHHhhcCCCCe----e----EEEEe---CC--eEEEeEeEEeccc
Q psy11353 16 HNYQTSLLATLPQLLDGEDLT----D----VTLSA---GG--RHMKAHKVVLSAC 57 (76)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~----D----v~l~v---~g--~~~~aHr~vLa~~ 57 (76)
......|.+.|.++|+++.+. | |++.- +| +...+|.+|+++.
T Consensus 155 i~lAh~L~~rla~~Rk~g~l~~lrPD~KtQVTveY~~~~~~~~P~rv~tvviS~Q 209 (396)
T 2p02_A 155 IVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQ 209 (396)
T ss_dssp HHHHHHHHHHHHHHHHTTSSTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCCCcceEEEEEEEcCCCCcCceEEeEEEEeec
Confidence 346778889999999988654 5 55543 56 6788999998876
No 37
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=26.39 E-value=1.5e+02 Score=20.66 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=32.3
Q ss_pred ccchHHHHHHHHHHhhcCCCCe----e----EEEEe-CCeEEEeEeEEeccc
Q psy11353 15 WHNYQTSLLATLPQLLDGEDLT----D----VTLSA-GGRHMKAHKVVLSAC 57 (76)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~~~~----D----v~l~v-~g~~~~aHr~vLa~~ 57 (76)
.......|...|.++|+++.+. | |++.- +|+....|.+|+++.
T Consensus 137 pi~lAh~L~~rl~~~Rk~g~~~~lrPD~KtQVtveY~~~~P~rv~tvviS~Q 188 (383)
T 1p7l_A 137 PITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVGIDAVVLSTQ 188 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCCCccceEEEEEeCCceeEEEEEEEEee
Confidence 3346778889999999988553 5 55533 667889999999886
No 38
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=23.00 E-value=1.1e+02 Score=18.07 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHHHhhcCCCCeeEEEEeCCe
Q psy11353 15 WHNYQTSLLATLPQLLDGEDLTDVTLSAGGR 45 (76)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~ 45 (76)
.++....+.+.+.++...+ +|++|..||.
T Consensus 51 v~Dd~~~I~~~l~~a~~~~--~DlVittGG~ 79 (167)
T 2g2c_A 51 VPEGYDTVVEAIATALKQG--ARFIITAGGT 79 (167)
T ss_dssp ECSSHHHHHHHHHHHHHTT--CSEEEEESCC
T ss_pred eCCCHHHHHHHHHHHHhCC--CCEEEECCCC
Confidence 3445778888888877643 7999999884
No 39
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=21.82 E-value=1.4e+02 Score=18.07 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhcCCCCeeEEEEeCC
Q psy11353 19 QTSLLATLPQLLDGEDLTDVTLSAGG 44 (76)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~Dv~l~v~g 44 (76)
...+.+.|.+++.+|. .|++|++||
T Consensus 85 S~~fA~~l~~~~~~G~-~~i~FvIGG 109 (167)
T 1to0_A 85 SEELADTIDKLATYGK-SKVTFVIGG 109 (167)
T ss_dssp HHHHHHHHHHHHTTTC-CEEEEEECC
T ss_pred HHHHHHHHHHHHhcCC-ceEEEEEEC
Confidence 4566667777776664 399999998
No 40
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=20.84 E-value=1.2e+02 Score=21.48 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHhhcCCCC----ee----EEEEeC---C--eEEEeEeEEeccc
Q psy11353 17 NYQTSLLATLPQLLDGEDL----TD----VTLSAG---G--RHMKAHKVVLSAC 57 (76)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~----~D----v~l~v~---g--~~~~aHr~vLa~~ 57 (76)
.....+.+.|.++|+++.+ .| |++.-. | +....|.+|+++.
T Consensus 160 ~lAH~L~~rla~~Rk~g~l~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQ 213 (415)
T 3so4_A 160 VLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQ 213 (415)
T ss_dssp HHHHHHHHHHHHHHHHSSSTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEe
Confidence 3577888899999987754 34 666543 4 6788999999876
Done!