RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11353
(76 letters)
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional
repression, transcription; 1.30A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 67.2 bits (165), Expect = 2e-16
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 7 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
GS +++ + + +L L +L + LTDV + +AHK VL ACS F +F
Sbjct: 1 GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIF 59
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A
{Homo sapiens} PDB: 3ohv_A
Length = 125
Score = 66.1 bits (162), Expect = 5e-16
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 7 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
GS + + T++L L + L DVTL + +AH+ VL+ACS YF Q
Sbjct: 4 GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQAL 62
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain,
POK, proto oncogene, transcription F transcription;
2.00A {Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 64.5 bits (158), Expect = 1e-15
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 12 CLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
+ + ++ + +L+ L + L DV + GR H+ VL+ACS YFK+LF
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLF 55
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 63.8 bits (156), Expect = 3e-15
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 5 LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
++ + Y SLL +L + DVT+ R +AHK +LSA S YF QL
Sbjct: 1 MESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQL 60
Query: 65 FKVSKSSAEI 74
F V+ E+
Sbjct: 61 FSVAGQVVEL 70
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 63.1 bits (154), Expect = 6e-15
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 8 SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKV 67
+Q + N+ S+L L + DV++ G KAH+ VL+A S YF+ LF
Sbjct: 6 AQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNN 65
Query: 68 SKSS 71
S+S+
Sbjct: 66 SRSA 69
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A
{Homo sapiens} PDB: 3m52_A
Length = 119
Score = 62.6 bits (153), Expect = 7e-15
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 7 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
G H +L L Q L D T G H KAHK VL+ACS YFK LF
Sbjct: 1 GPLGSDFPQH--SQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV 58
Query: 67 VSKSSAEI 74
K +
Sbjct: 59 DQKDVVHL 66
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 62.6 bits (153), Expect = 8e-15
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 7 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
G Q H T LL Q+ L DV + + AH+ VL+ S F+ LF
Sbjct: 2 GMIQLQNPSH--PTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH 59
Query: 67 VSKSSAEI 74
+ +
Sbjct: 60 RNSQHYTL 67
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 63.1 bits (154), Expect = 8e-15
Identities = 12/66 (18%), Positives = 21/66 (31%)
Query: 8 SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKV 67
Q + + LL L + D L G + K +L+A S Y +
Sbjct: 20 FQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNY 79
Query: 68 SKSSAE 73
+ +
Sbjct: 80 NPPKDD 85
>2vpk_A Myoneurin; transcription regulation, transcription,
metal-binding, alternative splicing, zinc, nucleus, BTB
domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 62.6 bits (153), Expect = 9e-15
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 17 NYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAE 73
++ LL L + + L D T+ G KAH+ VL++ S YF +++ + +
Sbjct: 4 HHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNV 60
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 62.3 bits (152), Expect = 1e-14
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 8 SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
S F + T++L +L + L DVT+ G+ +AH+ VL+ACS YF
Sbjct: 9 SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRI 66
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel
related zinc finger protein 3, HKR3, ZBTB48, Z finger,
oncogene; 1.74A {Homo sapiens}
Length = 119
Score = 61.1 bits (149), Expect = 3e-14
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 17 NYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSS 71
+ +L L + + D TL GG KAH VL+ CSH+F+ L+
Sbjct: 6 QHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGG 60
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 61.1 bits (149), Expect = 4e-14
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 14 RWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
+ T++L +L + L DVT+ G+ +AH+ VL+ACS YF
Sbjct: 8 ESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRI 59
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 60.7 bits (148), Expect = 5e-14
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 17 NYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSS 71
+ +L L + + D TL GG KAH VL+ CSH+F++++
Sbjct: 7 GHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGG 61
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens}
PDB: 3hve_B
Length = 256
Score = 61.1 bits (149), Expect = 3e-13
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 16 HNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
+ LL L + D L G + K +L+A S Y +
Sbjct: 12 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKL 61
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 56.9 bits (138), Expect = 1e-12
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 18 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKV 67
Y + L L L L D ++ G + AH +VL+ S + +
Sbjct: 14 YGSDRLVQLAARLRPA-LCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQW 62
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 57.2 bits (139), Expect = 2e-12
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 22 LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
L L L + TD L G+ +AHK +L+A S F +F
Sbjct: 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMF 55
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 57.7 bits (140), Expect = 5e-12
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 8 SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTL---SAGGRHMKAHKVVLSACSHYFKQL 64
++ F H + L + D+TL AGGR +AH+ VL+A + YF L
Sbjct: 7 AEDFECSSH--CSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPL 64
Query: 65 F 65
Sbjct: 65 L 65
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 55.7 bits (135), Expect = 1e-11
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 22 LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
L L L + TD L G+ +AHK +L+A S F +F
Sbjct: 21 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMF 64
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 50.6 bits (122), Expect = 3e-10
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 29 LLDGEDLTDVTLSAG----GRHMKAHKVVLSACSHYFKQLF--KVSKSSAEIT 75
+ + E + DV G R + AHK VL+ S F +F +++ +EI
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIH 54
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 52.6 bits (126), Expect = 5e-10
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 22 LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
L L L + TD L G+ +AHK +L+A S F +F
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMF 204
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin,
transglutaminase fold, DNA-damage recognition, DNA
repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB:
2qsg_A* 2qsh_A*
Length = 533
Score = 26.8 bits (58), Expect = 0.67
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 12 CLRWHNY-----------QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHY 60
CL H + L +P+ + R + L C
Sbjct: 51 CLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMEL 110
Query: 61 FKQLFKVSKS 70
+++ +K++K
Sbjct: 111 WQKHWKITKK 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 26.2 bits (58), Expect = 0.77
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 12 CLRWHNYQTSLLATLPQL--LDGED 34
++Y+ ++ LPQL LDG D
Sbjct: 125 VTNLNDYRENVFKLLPQLTYLDGYD 149
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 26.2 bits (58), Expect = 0.97
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 12 CLRWHNYQTSLLATLPQL--LDGEDLTD 37
+Y+ ++ +PQ+ LD + +
Sbjct: 125 VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 25.9 bits (57), Expect = 1.0
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 12 CLRWHNYQTSLLATLPQL--LDGEDLTD 37
++Y+ S+ LPQL LDG D D
Sbjct: 132 VTNLNDYRESVFKLLPQLTYLDGYDRED 159
>2vcl_A Cyanobacterial phycoerythrobilin; cyanophages, biliverdin IXA,
oxidoreductase, phycobilin reductase, phycobilin
synthesis; 1.55A {Prochlorococcus phage p-ssm2} PDB:
2vck_A 2vgr_A* 2x9i_A* 2x9j_A*
Length = 233
Score = 25.4 bits (55), Expect = 1.7
Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 15 WHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKV 67
W NY +L T PQL E G L+A + K
Sbjct: 24 WQNYIDALFETFPQLEISE--VWAKWDGGNVTKDGGDAKLTANIRTGEHFLKA 74
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 24.8 bits (55), Expect = 3.2
Identities = 8/17 (47%), Positives = 8/17 (47%), Gaps = 4/17 (23%)
Query: 53 VLSA----CSHYFKQLF 65
VLS YFKQ F
Sbjct: 483 VLSHKPRLLYDYFKQRF 499
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 24.8 bits (55), Expect = 3.6
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 4/17 (23%)
Query: 53 VLSA----CSHYFKQLF 65
VLS H+F+Q F
Sbjct: 487 VLSDKYRGLHHFFRQNF 503
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory
domains, kinase transferase, PSI-2, protein structure
initiative; HET: LYS; 3.00A {Clostridium
acetobutylicum}
Length = 446
Score = 24.2 bits (53), Expect = 4.9
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 52 VVLSACSHYFKQLFKVS 68
++ SA + +K++
Sbjct: 36 IIPSAPGKRTNKDYKIT 52
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 24.2 bits (51), Expect = 5.5
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 3 PQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDL 35
L + LR HN L L +GE L
Sbjct: 260 ILLATAHTLLLREHNRLARELKKLNPHWNGEKL 292
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.130 0.388
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,084,538
Number of extensions: 47319
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 30
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)