RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11353
         (76 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 53.6 bits (128), Expect = 1e-11
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 13 LRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          +++  + + +L  L +L   + LTDV +       +AHK VL ACS  F  +F 
Sbjct: 3  IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFT 56


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
          protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 48.9 bits (116), Expect = 8e-10
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 13 LRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFK 62
          L+  ++ T LL    Q+     L DV +    +   AH+ VL+  S  F+
Sbjct: 6  LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE 55


>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
           aries) [TaxId: 9940]}
          Length = 511

 Score = 24.9 bits (54), Expect = 1.2
 Identities = 10/35 (28%), Positives = 11/35 (31%)

Query: 1   MDPQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDL 35
           + P L       LR HN    LL         E L
Sbjct: 221 LLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQL 255


>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 511

 Score = 24.5 bits (53), Expect = 1.6
 Identities = 8/35 (22%), Positives = 10/35 (28%)

Query: 1   MDPQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDL 35
           + P L       LR H     +L         E L
Sbjct: 222 LVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQL 256


>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
          central and FMN domains {Synechocystis sp. [TaxId:
          1143]}
          Length = 809

 Score = 23.8 bits (51), Expect = 2.8
 Identities = 5/8 (62%), Positives = 5/8 (62%)

Query: 58 SHYFKQLF 65
            YFKQ F
Sbjct: 62 YDYFKQRF 69


>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 42

 Score = 22.3 bits (48), Expect = 3.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 57 CSHYFKQLFK 66
          C  +F QLFK
Sbjct: 23 CKPHFNQLFK 32


>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
          central and FMN domains {Azospirillum brasilense
          [TaxId: 192]}
          Length = 771

 Score = 23.3 bits (50), Expect = 4.2
 Identities = 4/8 (50%), Positives = 6/8 (75%)

Query: 58 SHYFKQLF 65
           H+F+Q F
Sbjct: 74 HHFFRQNF 81


>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 570

 Score = 22.8 bits (48), Expect = 5.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 3   PQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDL 35
           P+L       LR HN   + L +L    DGE L
Sbjct: 236 PELTSMHTLLLREHNRLATELKSLNPRWDGERL 268


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 266,225
Number of extensions: 8614
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 9
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)