BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11354
         (120 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MZW|B Chain B, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
           Spliceosomal Cyclophilin H And A U4U6-60k Peptide
          Length = 31

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/22 (77%), Positives = 19/22 (86%)

Query: 86  QVKLNLRQLGEPICLFGEGPAE 107
           +VK +LR LGEPI LFGEGPAE
Sbjct: 1   EVKASLRALGEPITLFGEGPAE 22


>pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S-
           Adenosylmethionine-dependent Radical Enzyme
 pdb|1R30|B Chain B, The Crystal Structure Of Biotin Synthase, An S-
           Adenosylmethionine-dependent Radical Enzyme
          Length = 369

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 19  GSLEEQERKRLA------ANKDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQA 64
           G+L E + +RLA       N ++D   E Y N+ T+  Y E  D + K + A
Sbjct: 155 GTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDA 206


>pdb|4HET|A Chain A, Crystal Structure Of A Hypothetical Glycoside Hydrolase
          (Bt3745) From Bacteroides Thetaiotaomicron Vpi-5482 At
          2.10 A Resolution
 pdb|4HET|B Chain B, Crystal Structure Of A Hypothetical Glycoside Hydrolase
          (Bt3745) From Bacteroides Thetaiotaomicron Vpi-5482 At
          2.10 A Resolution
          Length = 360

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 32 NKDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVK 88
          NK  D  ++K   V      ++I+D++A D +A   +F     +R   V+++D Q K
Sbjct: 42 NKGADLSKQKLEFVIPEGATIKINDQVAGDTEATY-DFSEETHSRKFTVTSEDGQWK 97


>pdb|2HIH|A Chain A, Crystal Structure Of Staphylococcus Hyicus Lipase
 pdb|2HIH|B Chain B, Crystal Structure Of Staphylococcus Hyicus Lipase
          Length = 431

 Score = 26.2 bits (56), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 33  KDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDN 85
           K + D   ++T + T N    +DD + +    L+ E   +  +   N+S D+N
Sbjct: 319 KHIADLGMEFTKILTGNYIGSVDDILWRPNDGLVSEISSQHPSDEKNISVDEN 371


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.129    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,142,911
Number of Sequences: 62578
Number of extensions: 110813
Number of successful extensions: 199
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 19
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)