BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11354
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O43172|PRP4_HUMAN U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4
PE=1 SV=2
Length = 522
Score = 109 bits (273), Expect = 5e-24, Method: Composition-based stats.
Identities = 61/121 (50%), Positives = 83/121 (68%), Gaps = 7/121 (5%)
Query: 4 DEDVIYVKKQNTVHYGSLEEQERKRLAAN------KDVDDDQEKYTNVH-TSNVYMEIDD 56
D+ V V K+ ++YGSLEE+ER+RLA KD + N++ TS EI++
Sbjct: 18 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVFEIEE 77
Query: 57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
+++ + +L EFERRK+AR +NVSTDD++VK LR LGEPI LFGEGPAERR RLR++L
Sbjct: 78 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNIL 137
Query: 117 S 117
S
Sbjct: 138 S 138
>sp|Q5NVD0|PRP4_PONAB U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4
PE=2 SV=1
Length = 521
Score = 109 bits (272), Expect = 6e-24, Method: Composition-based stats.
Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 7/121 (5%)
Query: 4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
D+ V V K+ ++YGSLEE+ER+RLA + +E + N++ TS EI++
Sbjct: 17 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEE 76
Query: 57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
+++ + +L EFERRK+AR +NVSTDD++VK LR LGEPI LFGEGPAERR RLR++L
Sbjct: 77 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNIL 136
Query: 117 S 117
S
Sbjct: 137 S 137
>sp|Q3MHE2|PRP4_BOVIN U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4
PE=2 SV=1
Length = 521
Score = 109 bits (272), Expect = 6e-24, Method: Composition-based stats.
Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 7/121 (5%)
Query: 4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
D+ V V K+ ++YGSLEE+ER+RLA + +E + N++ TS EI++
Sbjct: 17 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGLLGKEGLKAGIEAGNINITSGEVFEIEE 76
Query: 57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
+++ + +L EFERRK+AR +NVSTDD++VK LR LGEPI LFGEGPAERR RLR++L
Sbjct: 77 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNIL 136
Query: 117 S 117
S
Sbjct: 137 S 137
>sp|Q9DAW6|PRP4_MOUSE U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4
PE=2 SV=1
Length = 521
Score = 108 bits (271), Expect = 7e-24, Method: Composition-based stats.
Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 7/121 (5%)
Query: 4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
D+ V V K+ ++YGSLEE+ER+RLA + +E + N++ TS EI++
Sbjct: 17 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEE 76
Query: 57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
+++ + +L EFERRK+AR +NVSTDD++VK LR LGEPI LFGEGPAERR RLR++L
Sbjct: 77 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNIL 136
Query: 117 S 117
S
Sbjct: 137 S 137
>sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein
OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1
Length = 554
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 66 LQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLS 117
LQ+ +++A + V T+D V+ LR+LGEPI LFGE ERR+RL LL+
Sbjct: 105 LQDLLVKRRAAAMAVPTNDKAVRDRLRRLGEPITLFGEQEMERRARLTQLLT 156
>sp|Q9UTC7|YIDC_SCHPO Uncharacterized WD repeat-containing protein C227.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC227.12 PE=4 SV=1
Length = 462
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 58 MAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
K++ A E + + + + + + +D++V+ LR+ GEPI FGE RR RL+ L+
Sbjct: 24 FTKEQAAYYAEQKEKDRIKALKIPYEDSKVREYLRRYGEPITYFGEDALARRQRLQQLM 82
>sp|A6VQ31|KDSB_ACTSZ 3-deoxy-manno-octulosonate cytidylyltransferase OS=Actinobacillus
succinogenes (strain ATCC 55618 / 130Z) GN=kdsB PE=3
SV=1
Length = 259
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 66 LQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSSL 119
+ E RR A V V+TD+ QVK + Q G +C+ E RL +++ L
Sbjct: 34 VWEKARRSGASRVVVATDNEQVKNAVLQFGGEVCMTSEKHNSGTERLAEVVEKL 87
>sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1
Length = 695
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 23 EQERKRLAANKDVDDDQEKYT-NVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVS 81
E++ +LA + D +KY NV+T +I DE K AL+ E E++KKA +
Sbjct: 69 EKKLSKLAWKEYATADGKKYWYNVNTRESVWDIPDEY---KAALVDEPEQQKKALSSKIK 125
Query: 82 TDDNQVKL-NLRQLGEPICLFGEGPAERRSR 111
++DN+ + ++++ G + PA+ +S+
Sbjct: 126 SNDNKPAVQSIQRHGPDVAAPSSQPAKDQSQ 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,915,375
Number of Sequences: 539616
Number of extensions: 1687137
Number of successful extensions: 5476
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 5418
Number of HSP's gapped (non-prelim): 119
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)