Query psy11354
Match_columns 120
No_of_seqs 145 out of 244
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 16:15:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dk4_A PRE-mRNA-splicing facto 99.6 2.6E-16 8.9E-21 107.6 5.5 41 78-118 23-63 (76)
2 1mzw_B U4/U6 snRNP 60KDA prote 99.6 7.9E-16 2.7E-20 89.5 3.0 31 86-116 1-31 (31)
3 2php_A Uncharacterized protein 26.3 31 0.0011 26.2 2.0 23 96-118 157-180 (192)
4 2osa_A N-chimaerin; RHO-GAP, G 24.5 84 0.0029 22.6 4.0 34 86-119 85-129 (202)
5 2ee4_A RHO GTPase activating p 23.3 81 0.0028 22.8 3.7 34 85-118 85-129 (209)
6 2ovj_A Mgcracgap, RAC GTPase-a 20.0 1.2E+02 0.0039 22.0 4.0 34 86-119 76-120 (201)
7 3iug_A RHO/CDC42/RAC GTPase-ac 19.7 1.2E+02 0.004 22.4 4.0 34 86-119 97-141 (229)
8 2aya_A DNA polymerase III subu 19.5 1.2E+02 0.0042 20.7 3.8 28 87-114 75-111 (128)
9 3jy6_A Transcriptional regulat 18.0 58 0.002 23.2 1.9 45 60-104 50-94 (276)
10 3l6u_A ABC-type sugar transpor 17.6 73 0.0025 22.7 2.4 46 59-104 50-98 (293)
No 1
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=99.63 E-value=2.6e-16 Score=107.61 Aligned_cols=41 Identities=34% Similarity=0.479 Sum_probs=39.0
Q ss_pred cCCCCCHHHHHHHHHhhCCCccccCCChHHHHHHHHHHHhh
Q psy11354 78 VNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSS 118 (120)
Q Consensus 78 ~~vPT~D~eVr~~LR~LgePi~LFGE~~~~RR~RLr~ll~~ 118 (120)
+.|||+|.+|+++||+||||||||||++.+||+||++|+..
T Consensus 23 ~~v~~~d~eV~~~LR~lgEPi~LFGE~~~~Rr~RLr~l~~~ 63 (76)
T 2dk4_A 23 LPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEIL 63 (76)
T ss_dssp SSCCSCHHHHHHHHHHHTCCSSCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCeeecCCChHHHHHHHHHHHhc
Confidence 37999999999999999999999999999999999999874
No 2
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=99.57 E-value=7.9e-16 Score=89.51 Aligned_cols=31 Identities=74% Similarity=1.237 Sum_probs=29.6
Q ss_pred HHHHHHHhhCCCccccCCChHHHHHHHHHHH
Q psy11354 86 QVKLNLRQLGEPICLFGEGPAERRSRLRDLL 116 (120)
Q Consensus 86 eVr~~LR~LgePi~LFGE~~~~RR~RLr~ll 116 (120)
+|+.+||+||||||||||++.+||+||+++|
T Consensus 1 eV~~~LR~lgePi~lFGE~~~~Rr~RLr~ll 31 (31)
T 1mzw_B 1 EVKASLRALGEPITLFGEGPAERRERLRNIL 31 (31)
T ss_dssp CHHHHHHHTTCCSEETTCCHHHHHHHHHHHC
T ss_pred CHHHHHHHcCCCeeecCCChHHHHHHHHHhC
Confidence 5899999999999999999999999999985
No 3
>2php_A Uncharacterized protein MJ0236; chlorine ION, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.03A {Methanocaldococcus jannaschii DSM2661} SCOP: c.74.1.2
Probab=26.26 E-value=31 Score=26.18 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=19.2
Q ss_pred CCcc-ccCCChHHHHHHHHHHHhh
Q psy11354 96 EPIC-LFGEGPAERRSRLRDLLSS 118 (120)
Q Consensus 96 ePi~-LFGE~~~~RR~RLr~ll~~ 118 (120)
||++ +||+++.+=-++++.|+..
T Consensus 157 EP~i~vfG~dp~ev~~kv~~l~~~ 180 (192)
T 2php_A 157 EPMIRVLGRDAIEVVKKVEVIQKI 180 (192)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHHH
Confidence 5777 9999999988888888754
No 4
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=24.54 E-value=84 Score=22.61 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=25.3
Q ss_pred HHHHHHHhhCCCccccC-----------CChHHHHHHHHHHHhhc
Q psy11354 86 QVKLNLRQLGEPICLFG-----------EGPAERRSRLRDLLSSL 119 (120)
Q Consensus 86 eVr~~LR~LgePi~LFG-----------E~~~~RR~RLr~ll~~~ 119 (120)
-++.-||+|-+|+..+. .++.+|.+.++.++..+
T Consensus 85 lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~L 129 (202)
T 2osa_A 85 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLL 129 (202)
T ss_dssp HHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 34677999999997663 45667888888887653
No 5
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=23.29 E-value=81 Score=22.84 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=24.6
Q ss_pred HHHHHHHHhhCCCccccC-----------CChHHHHHHHHHHHhh
Q psy11354 85 NQVKLNLRQLGEPICLFG-----------EGPAERRSRLRDLLSS 118 (120)
Q Consensus 85 ~eVr~~LR~LgePi~LFG-----------E~~~~RR~RLr~ll~~ 118 (120)
.-++.-||+|-+|+..+. ++..+|.+.|+.++..
T Consensus 85 ~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~ 129 (209)
T 2ee4_A 85 GALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKK 129 (209)
T ss_dssp HHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 345778999999987653 4556777888877754
No 6
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=20.04 E-value=1.2e+02 Score=21.95 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=24.3
Q ss_pred HHHHHHHhhCCCccccC-----------CChHHHHHHHHHHHhhc
Q psy11354 86 QVKLNLRQLGEPICLFG-----------EGPAERRSRLRDLLSSL 119 (120)
Q Consensus 86 eVr~~LR~LgePi~LFG-----------E~~~~RR~RLr~ll~~~ 119 (120)
-++.-||+|-+|+..+. +++.+|.+.++.++..+
T Consensus 76 lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~L 120 (201)
T 2ovj_A 76 LLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGEL 120 (201)
T ss_dssp HHHHHHHTSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 35667899999987653 35567788888877643
No 7
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=19.67 E-value=1.2e+02 Score=22.35 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=24.9
Q ss_pred HHHHHHHhhCCCccccC-----------CChHHHHHHHHHHHhhc
Q psy11354 86 QVKLNLRQLGEPICLFG-----------EGPAERRSRLRDLLSSL 119 (120)
Q Consensus 86 eVr~~LR~LgePi~LFG-----------E~~~~RR~RLr~ll~~~ 119 (120)
-++.-||+|-+|+.-+. .++.+|...|+.++..+
T Consensus 97 lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~L 141 (229)
T 3iug_A 97 LCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQL 141 (229)
T ss_dssp HHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35678999999987652 45667888888877653
No 8
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli}
Probab=19.53 E-value=1.2e+02 Score=20.68 Aligned_cols=28 Identities=21% Similarity=0.238 Sum_probs=18.0
Q ss_pred HHHHH-HhhCCCccc---cC-----CChHHHHHHHHH
Q psy11354 87 VKLNL-RQLGEPICL---FG-----EGPAERRSRLRD 114 (120)
Q Consensus 87 Vr~~L-R~LgePi~L---FG-----E~~~~RR~RLr~ 114 (120)
+...| ..+|.||.| +| |+|+.++.|.+.
T Consensus 75 L~~ALs~~~G~~v~L~i~~g~~~~~~TPa~~~~~~~~ 111 (128)
T 2aya_A 75 LAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYE 111 (128)
T ss_dssp HHHHHHHHHSSCCEEEEEECCCTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHH
Confidence 33444 347788776 34 588888888754
No 9
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=17.99 E-value=58 Score=23.22 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHhhCCCccccCCC
Q psy11354 60 KDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEG 104 (120)
Q Consensus 60 ~~~~~~L~e~E~~rr~r~~~vPT~D~eVr~~LR~LgePi~LFGE~ 104 (120)
+.+...++.+..++-...+..|.+..++...|...|-|+++++-.
T Consensus 50 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~~~iPvV~i~~~ 94 (276)
T 3jy6_A 50 EREKTLLRAIGSRGFDGLILQSFSNPQTVQEILHQQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHTTSSCEEEESCC
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHHCCCCEEEEecc
Confidence 444556666654443444556665577888899999999998854
No 10
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=17.63 E-value=73 Score=22.68 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCHH---HHHHHHHhhCCCccccCCC
Q psy11354 59 AKDKQALLQEFERRKKARHVNVSTDDN---QVKLNLRQLGEPICLFGEG 104 (120)
Q Consensus 59 ~~~~~~~L~e~E~~rr~r~~~vPT~D~---eVr~~LR~LgePi~LFGE~ 104 (120)
.+.+...++.+-.++-...+..|.+.. ++.+.|...|-|+++++-.
T Consensus 50 ~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 98 (293)
T 3l6u_A 50 RISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCC
Confidence 344556666665443333344565544 6778888899999999854
Done!