Your job contains 1 sequence.
>psy11354
MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTNVHTSNVYMEIDDEMAK
DKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSSLQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11354
(120 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0036733 - symbol:U4-U6-60K "U4-U6 small nuclear ri... 212 3.1e-26 2
UNIPROTKB|O43172 - symbol:PRPF4 "U4/U6 small nuclear ribo... 228 3.2e-18 1
MGI|MGI:1917302 - symbol:Prpf4 "PRP4 pre-mRNA processing ... 226 5.3e-18 1
RGD|1311303 - symbol:Prpf4 "PRP4 pre-mRNA processing fact... 226 5.3e-18 1
UNIPROTKB|F1PZB0 - symbol:PRPF4 "Uncharacterized protein"... 226 5.7e-18 1
UNIPROTKB|I3LDL8 - symbol:PRPF4 "Uncharacterized protein"... 226 5.8e-18 1
UNIPROTKB|Q3MHE2 - symbol:PRPF4 "U4/U6 small nuclear ribo... 225 6.9e-18 1
UNIPROTKB|F1NNQ9 - symbol:PRPF4 "Uncharacterized protein"... 221 1.9e-17 1
ZFIN|ZDB-GENE-030131-5143 - symbol:prpf4 "PRP4 pre-mRNA p... 216 6.1e-17 1
ASPGD|ASPL0000042645 - symbol:AN1468 species:162425 "Emer... 137 2.3e-08 1
WB|WBGene00007972 - symbol:prp-4 species:6239 "Caenorhabd... 129 1.5e-07 1
DICTYBASE|DDB_G0287635 - symbol:prpf4 "pre-mRNA processin... 123 8.9e-07 1
UNIPROTKB|G4MXN3 - symbol:MGG_01259 "Pre-mRNA splicing fa... 97 0.00046 1
>FB|FBgn0036733 [details] [associations]
symbol:U4-U6-60K "U4-U6 small nuclear riboprotein factor 60K"
species:7227 "Drosophila melanogaster" [GO:0005688 "U6 snRNP"
evidence=ISS] [GO:0005687 "U4 snRNP" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0030621 "U4 snRNA binding" evidence=IDA] [GO:0017070 "U6 snRNA
binding" evidence=IDA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:AE014296 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR027106 PANTHER:PTHR19846 GO:GO:0030532
GO:GO:0017070 GO:GO:0030621 InterPro:IPR014906 Pfam:PF08799
KO:K12662 GeneTree:ENSGT00690000101787 OMA:CKIWDLR HSSP:O43172
EMBL:AY061623 RefSeq:NP_648990.1 UniGene:Dm.987 SMR:Q9VVI0
MINT:MINT-295539 STRING:Q9VVI0 EnsemblMetazoa:FBtr0075209
GeneID:39955 KEGG:dme:Dmel_CG6322 UCSC:CG6322-RA CTD:39955
FlyBase:FBgn0036733 InParanoid:Q9VVI0 OrthoDB:EOG4R7SRZ
GenomeRNAi:39955 NextBio:816257 Uniprot:Q9VVI0
Length = 553
Score = 212 (79.7 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 38/57 (66%), Positives = 48/57 (84%)
Query: 51 YMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
Y +++ EM +DK ALL+EFER+K+AR +NVSTDD ++K NLRQL EPIC FGEGPAE
Sbjct: 101 YFDLEMEMERDKVALLEEFERKKRARQINVSTDDTEIKSNLRQLNEPICYFGEGPAE 157
Score = 116 (45.9 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 20/28 (71%), Positives = 25/28 (89%)
Query: 1 MSDDEDVIYVKKQNTVHYGSLEEQERKR 28
MSDD+D+ Y+K+Q T+HYGSLEE ERKR
Sbjct: 1 MSDDDDIQYIKRQRTLHYGSLEESERKR 28
Score = 46 (21.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 20/86 (23%), Positives = 38/86 (44%)
Query: 21 LEEQERKRLAANKDVD-DDQEKYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVN 79
LEE ERK+ A +V DD E +N+ N + E +++ L+E +N
Sbjct: 116 LEEFERKKRARQINVSTDDTEIKSNLRQLNEPICYFGEGPAERRRRLKELLAGLGENAIN 175
Query: 80 VSTDDNQVKLNLRQLGEPICLFGEGP 105
+++ + ++ + + EGP
Sbjct: 176 KRQYEDEERKQQQREQDQATWYHEGP 201
>UNIPROTKB|O43172 [details] [associations]
symbol:PRPF4 "U4/U6 small nuclear ribonucleoprotein Prp4"
species:9606 "Homo sapiens" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=IC;NAS] [GO:0008380 "RNA splicing" evidence=NAS;TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0071001 "U4/U6 snRNP"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR003648 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
SMART:SM00500 EMBL:AF001687 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0016607 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 EMBL:CH471090 Reactome:REACT_1675
GO:GO:0005681 GO:GO:0015030 GO:GO:0000398 InterPro:IPR027106
PANTHER:PTHR19846 EMBL:AL449305 GO:GO:0071001 PDB:1MZW PDBsum:1MZW
InterPro:IPR014906 Pfam:PF08799 HOGENOM:HOG000157615 KO:K12662
CTD:9128 HOVERGEN:HBG030892 OMA:CKIWDLR OrthoDB:EOG45DWP9
EMBL:AF016369 EMBL:U82756 EMBL:BC001588 EMBL:BC007424
IPI:IPI00150269 IPI:IPI00218435 RefSeq:NP_001231855.1
RefSeq:NP_004688.2 UniGene:Hs.374973 ProteinModelPortal:O43172
SMR:O43172 IntAct:O43172 MINT:MINT-270624 STRING:O43172
PhosphoSite:O43172 PaxDb:O43172 PRIDE:O43172 DNASU:9128
Ensembl:ENST00000374198 Ensembl:ENST00000374199 GeneID:9128
KEGG:hsa:9128 UCSC:uc004bgx.3 GeneCards:GC09P116037 HGNC:HGNC:17349
HPA:HPA021794 HPA:HPA022248 MIM:607795 neXtProt:NX_O43172
PharmGKB:PA38448 InParanoid:O43172 PhylomeDB:O43172
BindingDB:O43172 ChEMBL:CHEMBL1163119 EvolutionaryTrace:O43172
GenomeRNAi:9128 NextBio:34217 ArrayExpress:O43172 Bgee:O43172
CleanEx:HS_PRPF4 Genevestigator:O43172 GermOnline:ENSG00000136875
Uniprot:O43172
Length = 522
Score = 228 (85.3 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 54/111 (48%), Positives = 75/111 (67%)
Query: 4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKD--VDDDQEKYT----NVH-TSNVYMEIDD 56
D+ V V K+ ++YGSLEE+ER+RLA + + D K N++ TS EI++
Sbjct: 18 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVFEIEE 77
Query: 57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
+++ + +L EFERRK+AR +NVSTDD++VK LR LGEPI LFGEGPAE
Sbjct: 78 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 128
>MGI|MGI:1917302 [details] [associations]
symbol:Prpf4 "PRP4 pre-mRNA processing factor 4 homolog
(yeast)" species:10090 "Mus musculus" [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0015030
"Cajal body" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] [GO:0071001 "U4/U6 snRNP" evidence=ISO]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR003648
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 SMART:SM00500 MGI:MGI:1917302 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0016607 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0006397 GO:GO:0005681 GO:GO:0015030
InterPro:IPR027106 PANTHER:PTHR19846 GO:GO:0071001
InterPro:IPR014906 Pfam:PF08799 HOGENOM:HOG000157615 KO:K12662
CTD:9128 GeneTree:ENSGT00690000101787 HOVERGEN:HBG030892
OMA:CKIWDLR OrthoDB:EOG45DWP9 EMBL:AK005464 EMBL:AK089838
EMBL:AK166912 EMBL:AK167216 EMBL:AK169532 EMBL:BC106089
IPI:IPI00458908 RefSeq:NP_081573.1 UniGene:Mm.30660
ProteinModelPortal:Q9DAW6 SMR:Q9DAW6 STRING:Q9DAW6
PhosphoSite:Q9DAW6 PaxDb:Q9DAW6 PRIDE:Q9DAW6
Ensembl:ENSMUST00000084524 GeneID:70052 KEGG:mmu:70052
InParanoid:Q9DAW6 ChiTaRS:PRPF4 NextBio:330897 Bgee:Q9DAW6
CleanEx:MM_PRPF4 Genevestigator:Q9DAW6
GermOnline:ENSMUSG00000066148 Uniprot:Q9DAW6
Length = 521
Score = 226 (84.6 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 53/111 (47%), Positives = 75/111 (67%)
Query: 4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
D+ V V K+ ++YGSLEE+ER+RLA + +E + N++ TS EI++
Sbjct: 17 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEE 76
Query: 57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
+++ + +L EFERRK+AR +NVSTDD++VK LR LGEPI LFGEGPAE
Sbjct: 77 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127
>RGD|1311303 [details] [associations]
symbol:Prpf4 "PRP4 pre-mRNA processing factor 4 homolog (yeast)"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0015030
"Cajal body" evidence=IEA;ISO] [GO:0071001 "U4/U6 snRNP"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR003648
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 SMART:SM00500 RGD:1311303 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0015030
InterPro:IPR027106 PANTHER:PTHR19846 GO:GO:0071001
InterPro:IPR014906 Pfam:PF08799 KO:K12662 CTD:9128
GeneTree:ENSGT00690000101787 OMA:CKIWDLR OrthoDB:EOG45DWP9
EMBL:CH473978 IPI:IPI00357902 RefSeq:NP_001100129.1
UniGene:Rn.162812 Ensembl:ENSRNOT00000019910 GeneID:298095
KEGG:rno:298095 UCSC:RGD:1311303 NextBio:643144 Uniprot:D4A7J8
Length = 521
Score = 226 (84.6 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 53/111 (47%), Positives = 75/111 (67%)
Query: 4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
D+ V V K+ ++YGSLEE+ER+RLA + +E + N++ TS EI++
Sbjct: 17 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEE 76
Query: 57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
+++ + +L EFERRK+AR +NVSTDD++VK LR LGEPI LFGEGPAE
Sbjct: 77 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127
>UNIPROTKB|F1PZB0 [details] [associations]
symbol:PRPF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR003648
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 SMART:SM00500 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 InterPro:IPR027106
PANTHER:PTHR19846 InterPro:IPR014906 Pfam:PF08799
GeneTree:ENSGT00690000101787 OMA:CKIWDLR EMBL:AAEX03008082
Ensembl:ENSCAFT00000005189 Uniprot:F1PZB0
Length = 537
Score = 226 (84.6 bits), Expect = 5.7e-18, P = 5.7e-18
Identities = 53/111 (47%), Positives = 75/111 (67%)
Query: 4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
D+ V V K+ ++YGSLEE+ER+RLA + +E + N++ TS EI++
Sbjct: 33 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEE 92
Query: 57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
+++ + +L EFERRK+AR +NVSTDD++VK LR LGEPI LFGEGPAE
Sbjct: 93 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 143
>UNIPROTKB|I3LDL8 [details] [associations]
symbol:PRPF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071001 "U4/U6 snRNP" evidence=IEA] [GO:0015030 "Cajal
body" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR003648
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 SMART:SM00500 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0015030 InterPro:IPR027106
PANTHER:PTHR19846 GO:GO:0071001 InterPro:IPR014906 Pfam:PF08799
GeneTree:ENSGT00690000101787 OMA:CKIWDLR EMBL:FP339611
ProteinModelPortal:I3LDL8 Ensembl:ENSSSCT00000032454 Uniprot:I3LDL8
Length = 539
Score = 226 (84.6 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 53/111 (47%), Positives = 75/111 (67%)
Query: 4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
D+ V V K+ ++YGSLEE+ER+RLA + +E + N++ TS EI++
Sbjct: 35 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEE 94
Query: 57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
+++ + +L EFERRK+AR +NVSTDD++VK LR LGEPI LFGEGPAE
Sbjct: 95 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 145
>UNIPROTKB|Q3MHE2 [details] [associations]
symbol:PRPF4 "U4/U6 small nuclear ribonucleoprotein Prp4"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0071001 "U4/U6 snRNP" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR003648 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SMART:SM00500 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0016607 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0006397 GO:GO:0005681 GO:GO:0015030
InterPro:IPR027106 PANTHER:PTHR19846 HSSP:P63005 GO:GO:0071001
InterPro:IPR014906 Pfam:PF08799 HOGENOM:HOG000157615 KO:K12662
EMBL:BC105270 IPI:IPI00688145 RefSeq:NP_001029502.1
UniGene:Bt.16360 ProteinModelPortal:Q3MHE2 SMR:Q3MHE2 STRING:Q3MHE2
PRIDE:Q3MHE2 Ensembl:ENSBTAT00000006004 GeneID:508735
KEGG:bta:508735 CTD:9128 GeneTree:ENSGT00690000101787
HOVERGEN:HBG030892 InParanoid:Q3MHE2 OMA:CKIWDLR OrthoDB:EOG45DWP9
NextBio:20868661 Uniprot:Q3MHE2
Length = 521
Score = 225 (84.3 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 53/111 (47%), Positives = 75/111 (67%)
Query: 4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
D+ V V K+ ++YGSLEE+ER+RLA + +E + N++ TS EI++
Sbjct: 17 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGLLGKEGLKAGIEAGNINITSGEVFEIEE 76
Query: 57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
+++ + +L EFERRK+AR +NVSTDD++VK LR LGEPI LFGEGPAE
Sbjct: 77 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127
>UNIPROTKB|F1NNQ9 [details] [associations]
symbol:PRPF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0015030 "Cajal
body" evidence=IEA] [GO:0071001 "U4/U6 snRNP" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR003648
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 SMART:SM00500 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0015030 InterPro:IPR027106
PANTHER:PTHR19846 GO:GO:0071001 InterPro:IPR014906 Pfam:PF08799
GeneTree:ENSGT00690000101787 OMA:CKIWDLR EMBL:AADN02026938
EMBL:AADN02026937 IPI:IPI00576508 Ensembl:ENSGALT00000014388
Uniprot:F1NNQ9
Length = 521
Score = 221 (82.9 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 50/103 (48%), Positives = 70/103 (67%)
Query: 12 KQNTVHYGSLEEQERKRLAANKD--VDDDQEKYT----NVH-TSNVYMEIDDEMAKDKQA 64
K+ + YGSLEE+ER+RLA + + + K N++ +S E++D M++ +
Sbjct: 25 KRAPIFYGSLEEKERERLAKGESGLLGKEGMKAALEAGNINISSGEVFELEDHMSERQAE 84
Query: 65 LLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
+L EFERRK+AR +NVSTDD++VK LR LGEPI LFGEGPAE
Sbjct: 85 VLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127
>ZFIN|ZDB-GENE-030131-5143 [details] [associations]
symbol:prpf4 "PRP4 pre-mRNA processing factor 4
homolog (yeast)" species:7955 "Danio rerio" [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR003648 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
SMART:SM00500 ZFIN:ZDB-GENE-030131-5143 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0060041 InterPro:IPR027106 PANTHER:PTHR19846
InterPro:IPR014906 Pfam:PF08799 HOGENOM:HOG000157615 KO:K12662
CTD:9128 GeneTree:ENSGT00690000101787 HOVERGEN:HBG030892
OMA:CKIWDLR OrthoDB:EOG45DWP9 EMBL:BX510338 EMBL:CR925761
EMBL:CU652834 EMBL:BC056720 EMBL:BC154322 IPI:IPI00488410
RefSeq:NP_956049.1 RefSeq:XP_002662201.1 UniGene:Dr.76045
SMR:Q6PH45 STRING:Q6PH45 Ensembl:ENSDART00000097395
Ensembl:ENSDART00000111950 GeneID:100334455 GeneID:326944
KEGG:dre:100334455 KEGG:dre:326944 InParanoid:Q6PH45
NextBio:20809805 Uniprot:Q6PH45
Length = 507
Score = 216 (81.1 bits), Expect = 6.1e-17, P = 6.1e-17
Identities = 53/112 (47%), Positives = 74/112 (66%)
Query: 4 DEDVIYVKKQNTVHYGSLEEQERKRLAAN------KD-VDDDQEK-YTNVHTSNVYMEID 55
DED V K++ + YGSLEE+E++RL+ KD V E + N+ +S ME++
Sbjct: 3 DEDEAPVVKRSRIFYGSLEEKEKERLSREGTSTTAKDAVKAGIEAGHINI-SSGESMEME 61
Query: 56 DEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
+ +++ + +L EFERRK+AR + VSTDD +VK LR LGEPI LFGEGPAE
Sbjct: 62 ERVSERQAEVLAEFERRKRARQITVSTDDVEVKACLRALGEPITLFGEGPAE 113
>ASPGD|ASPL0000042645 [details] [associations]
symbol:AN1468 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 EMBL:BN001307 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 InterPro:IPR027106 PANTHER:PTHR19846
EMBL:AACD01000022 InterPro:IPR014906 Pfam:PF08799
HOGENOM:HOG000157615 KO:K12662 OMA:CKIWDLR OrthoDB:EOG4V1B90
RefSeq:XP_659072.1 ProteinModelPortal:Q5BDB2 SMR:Q5BDB2
STRING:Q5BDB2 EnsemblFungi:CADANIAT00008085 GeneID:2875152
KEGG:ani:AN1468.2 Uniprot:Q5BDB2
Length = 521
Score = 137 (53.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 59 AKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
A+ A++ +FER+++A + V TDD +V+ LR+LGEPI LFGEGPA+
Sbjct: 42 AEKASAIISQFERKRRAAAMAVPTDDTRVRARLRELGEPITLFGEGPAD 90
>WB|WBGene00007972 [details] [associations]
symbol:prp-4 species:6239 "Caenorhabditis elegans"
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR003648 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SMART:SM00500 EMBL:Z80215
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0016477
GO:GO:0008406 GO:GO:0002119 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR027106 PANTHER:PTHR19846
GO:GO:0001703 InterPro:IPR014906 Pfam:PF08799 HOGENOM:HOG000157615
KO:K12662 GeneTree:ENSGT00690000101787 OMA:CKIWDLR PIR:T19776
RefSeq:NP_492363.1 HSSP:O43172 ProteinModelPortal:Q93339 SMR:Q93339
DIP:DIP-26822N IntAct:Q93339 MINT:MINT-1102466 STRING:Q93339
PaxDb:Q93339 EnsemblMetazoa:C36B1.5.1 EnsemblMetazoa:C36B1.5.2
GeneID:183250 KEGG:cel:CELE_C36B1.5 UCSC:C36B1.5.1 CTD:183250
WormBase:C36B1.5 InParanoid:Q93339 NextBio:920460 Uniprot:Q93339
Length = 496
Score = 129 (50.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 18 YGSLEEQERKRLAANKDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQA-LLQEFERRKKAR 76
+GSL E + N ++ Q+ + S ME+ ++ A + EF+RR++AR
Sbjct: 16 FGSLANAE----SVNAILNAQQQNHGPT-VSLERMEVSNQADSRHDAEMFAEFDRRRRAR 70
Query: 77 HVNVSTDDNQVKLNLRQLGEPICLFGE 103
+ + TDD QVKL LR L +PICLFGE
Sbjct: 71 TLTLPTDDVQVKLKLRALNQPICLFGE 97
>DICTYBASE|DDB_G0287635 [details] [associations]
symbol:prpf4 "pre-mRNA processing factor 4"
species:44689 "Dictyostelium discoideum" [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 dictyBase:DDB_G0287635
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GenomeReviews:CM000154_GR EMBL:AAFI02000103 GO:GO:0000398
InterPro:IPR027106 PANTHER:PTHR19846 GO:GO:0046540
InterPro:IPR014906 Pfam:PF08799 KO:K12662 OMA:CIATVSH
RefSeq:XP_637144.1 ProteinModelPortal:Q54K20 STRING:Q54K20
EnsemblProtists:DDB0233058 GeneID:8626239 KEGG:ddi:DDB_G0287635
InParanoid:Q54K20 ProtClustDB:CLSZ2497485 Uniprot:Q54K20
Length = 600
Score = 123 (48.4 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 63 QALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGP 105
Q +L E+ER+K+A+ V V T DN VKL LR+L EPI LFGE P
Sbjct: 55 QKVLDEYERKKRAKQVIVPTIDNLVKLKLRELLEPIILFGEKP 97
>UNIPROTKB|G4MXN3 [details] [associations]
symbol:MGG_01259 "Pre-mRNA splicing factor" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 EMBL:CM001232
InterPro:IPR027106 PANTHER:PTHR19846 InterPro:IPR014906
Pfam:PF08799 KO:K12662 RefSeq:XP_003714171.1
ProteinModelPortal:G4MXN3 EnsemblFungi:MGG_01259T0 GeneID:2679643
KEGG:mgr:MGG_01259 Uniprot:G4MXN3
Length = 531
Score = 97 (39.2 bits), Expect = 0.00046, P = 0.00046
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 64 ALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
A++ F+R+K A + V T+D +V+ LR +GEPI LFGE E
Sbjct: 51 AIMSGFDRKKIADAIPVPTNDVRVRARLRDMGEPITLFGEDAKE 94
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.129 0.352 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 120 108 0.00091 102 3 11 23 0.38 31
29 0.40 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 511 (54 KB)
Total size of DFA: 106 KB (2073 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.80u 0.08s 16.88t Elapsed: 00:00:03
Total cpu time: 16.80u 0.08s 16.88t Elapsed: 00:00:04
Start: Thu Aug 15 12:10:32 2013 End: Thu Aug 15 12:10:36 2013