RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11354
(120 letters)
>gnl|CDD|204069 pfam08799, PRP4, pre-mRNA processing factor 4 (PRP4) like. This
small domain is found on PRP4 ribonuleoproteins. PRP4 is
a U4/U6 small nuclear ribonucleoprotein that is involved
in pre-mRNA processing.
Length = 30
Score = 53.9 bits (131), Expect = 2e-11
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 87 VKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
V LR+LGEPI LFGE A+RR RLR LL
Sbjct: 1 VIRRLRELGEPITLFGETDADRRERLRKLL 30
>gnl|CDD|128776 smart00500, SFM, Splicing Factor Motif, present in Prp18 and Pr04.
Length = 44
Score = 46.6 bits (111), Expect = 2e-08
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 82 TDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSS 118
D++V LR+LGEPI LFGE ERR RLR LL
Sbjct: 1 LPDSEVIRRLRELGEPITLFGEDDQERRQRLRQLLIV 37
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 30.4 bits (68), Expect = 0.20
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 26 RKRLAANKDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQALLQE 68
R RL ANKDV ++K N + DDE+ KD L+QE
Sbjct: 988 RARLTANKDV---EKKEINQPGTVFAYNSDDEIFKDPSFLIQE 1027
>gnl|CDD|185063 PRK15108, PRK15108, biotin synthase; Provisional.
Length = 345
Score = 27.1 bits (60), Expect = 2.2
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 19 GSLEEQERKRLAA------NKDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQA 64
G+L E + +RLA N ++D E Y N+ T+ Y E D + K + A
Sbjct: 132 GTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDA 183
>gnl|CDD|232843 TIGR00133, gatB, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
B subunit. The heterotrimer GatABC is responsible for
transferring the NH2 group that converts Glu to Gln, or
Asp to Asn after the Glu or Asp has been ligated to the
tRNA for Gln or Asn, respectively. In Lactobacillus,
GatABC is responsible only for tRNA(Gln). In the
Archaea, GatABC is responsible only for tRNA(Asn), while
GatDE is responsible for tRNA(Gln). In lineages that
include Thermus, Chlamydia, or Acidithiobacillus, the
GatABC complex catalyzes both [Protein synthesis, tRNA
aminoacylation].
Length = 478
Score = 26.2 bits (58), Expect = 5.3
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 50 VYMEIDDEMAKDKQALLQEFERRKKARHV---NVSTDDNQV 87
+ ID+ + K+ L E K+ R +S D +V
Sbjct: 281 PPINIDELLVKEVAGKLPELPSAKRIRLKKEYGLSEQDAKV 321
>gnl|CDD|227731 COG5444, COG5444, Uncharacterized conserved protein [Function
unknown].
Length = 565
Score = 26.3 bits (58), Expect = 5.5
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 47 TSNVYMEIDD--EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQL 94
T + E+D + AKD L + ++ V + ++K +RQL
Sbjct: 141 TEDFKDEVDSARKHAKDTLEKLYKLDQEGMTLMAAVESKMQELKAIIRQL 190
>gnl|CDD|235643 PRK05907, PRK05907, hypothetical protein; Provisional.
Length = 311
Score = 25.5 bits (56), Expect = 8.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 100 LFGEGPAERRSRLRDLLS 117
LFGE A+R R+ LL
Sbjct: 127 LFGEWFADRDKRIAQLLI 144
>gnl|CDD|211388 cd11302, O-FucT-1, GDP-fucose protein O-fucosyltransferase 1. The
protein O-fucosyltransferase 1 (Ofut1 or O-FucT-1) adds
O-fucose to EGF (epidermal growth factor-like) repeats.
The O-fucsosylation of the Notch receptor signaling
protein is dependent on this enzyme, which requires
GDP-fucose as a substrate. O-fucose residues added to
the target of O-FucT-1 may be further elongated by other
glycosyltransferases. On top of O-fucosylation, O-FucT-1
may have other functions such as the regulation of the
Notch receptor exit from the ER. Six highly conserved
cysteines are present in O-FucT-1, which is a soluble ER
protein, as well as a DXD-like motif (ERD), conserved in
mammals, Drosophila, and C. elegans. Both features are
characteristic of several glycosyltransferase families.
The membrane-bound pre-protein is released by
proteolysis and, as for most glycosyltransferases, is
strongly activated by manganese. O-FucT-1 is similar to
family 1 glycosyltransferases (GT1).
Length = 347
Score = 25.3 bits (56), Expect = 8.7
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 43 TNVHTSNVYMEI----DDEMAKDKQALLQEFERRKKARHVNVSTDDN 85
+ E+ +E+ K ++ ++ KA+ V ++TD++
Sbjct: 238 YGNERGTLTKEMCLPSKEEILKQ----VKRAVKKIKAKSVFIATDND 280
>gnl|CDD|224549 COG1634, COG1634, Uncharacterized Rossmann fold enzyme [General
function prediction only].
Length = 232
Score = 25.4 bits (56), Expect = 9.3
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 50 VYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQ----VKLNLRQLGEPICLFGEGP 105
+Y I D+ D++ + A + ++ +L G + + G GP
Sbjct: 9 IYERILDDFGFDREED------EEAADLLRALAEELDLVAEAELLELIEGREVAVVGAGP 62
Query: 106 AER 108
+
Sbjct: 63 SLE 65
>gnl|CDD|193558 cd05683, M20_peptT_like, M20 Peptidase T like enzymes specifically
cleave tripeptides. Peptidase M20 family, PeptT
(tripeptide aminopeptidase; tripeptidase)-like
subfamily. This group includes bacterial tripeptidases
as well as predicted tripeptidases. Peptidase T acts
only on tripeptide substrates, and is thus called a
tripeptidase. It catalyzes the release of N-terminal
amino acids with hydrophobic side chains from
tripeptides with high specificity; dipeptides,
tetrapeptides or tripeptides with the N-terminus blocked
are not cleaved. Tripeptidases are known to function at
the final stage of proteolysis in lactococcal bacteria
and release amino acids from tripeptides produced during
the digestion of milk proteins such as casein.
Length = 366
Score = 25.2 bits (56), Expect = 9.7
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 42 YTNVHTSNVYMEIDDEMAKDKQALLQ 67
VHT+ + I+D + K + +L+
Sbjct: 338 MEKVHTTEERIAIED-LVKTAELVLE 362
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.130 0.352
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,103,112
Number of extensions: 533370
Number of successful extensions: 514
Number of sequences better than 10.0: 1
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 52
Length of query: 120
Length of database: 10,937,602
Length adjustment: 83
Effective length of query: 37
Effective length of database: 7,256,220
Effective search space: 268480140
Effective search space used: 268480140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)