RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11354
         (120 letters)



>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 63

 Score = 57.5 bits (139), Expect = 3e-13
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 70  ERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSS 118
           E       + ++    +V   LR+ GEPI LFGE   +   RLR +   
Sbjct: 8   ELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEIL 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.130    0.352 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 419,620
Number of extensions: 17702
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 15
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)