BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11355
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 41 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 100
GS C+++ + + +L L +L + LTDV + +AHK VL ACS F +F
Sbjct: 4 GSADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFT 63
Query: 101 EIDGYQHPVIIL-PGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLAD 156
+ VI L P + L+ FMY +N+ + + ++++ A L + + D
Sbjct: 64 DQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 120
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 69 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMY 128
L D T G H KAHK VL+ACS YFK LF + Q V+ L L ++ FMY
Sbjct: 25 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD----QKDVVHLDISNAAGLGQVLEFMY 80
Query: 129 NGEVNIYQQQLSSLLSMADALHIRGL 154
++++ + + +L++A L ++ +
Sbjct: 81 TAKLSLSPENVDDVLAVATFLQMQDI 106
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 69 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMY 128
L D T G H KAHK VL+ACS YFK LF + Q V+ L L ++ FMY
Sbjct: 27 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD----QKDVVHLDISNAAGLGQVLEFMY 82
Query: 129 NGEVNIYQQQLSSLLSMADALHIRGL 154
++++ + + +L++A L ++ +
Sbjct: 83 TAKLSLSPENVDDVLAVATFLQMQDI 108
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 71 DVTL---SAGGRHMKAHKVVLSACSHYFKQL----FKEIDGYQHPVIIL---PGVEFNDL 120
D+TL AGGR +AH+ VL+A + YF L F E + + PG E + +
Sbjct: 52 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTV 111
Query: 121 YALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTG 159
A++ +MY G + + + +L +AD + L +F G
Sbjct: 112 EAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCG 150
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 69 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKE---IDGYQHPVIILPGVEFNDLYALVT 125
L DV + GR H+ VL+ACS YFK+LF +D Q V + V L AL+
Sbjct: 25 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD--QQNVYEIDFVSAEALTALMD 82
Query: 126 FMYNGEVNIYQQQLSSLLSMADALHIRGLA 155
F Y + + + +LS A L I ++
Sbjct: 83 FAYTATLTVSTANVGDILSAARLLEIPAVS 112
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 69 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKE---IDGYQHPVIILPGVEFNDLYALVT 125
L DV + GR H+ VL+ACS YFK+LF +D Q V + V L AL+
Sbjct: 35 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD--QQNVYEIDFVSAEALTALMD 92
Query: 126 FMYNGEVNIYQQQLSSLLSMADALHIRGLA 155
F Y + + + +LS A L I ++
Sbjct: 93 FAYTATLTVSTANVGDILSAARLLEIPAVS 122
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 41 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 100
GS +++ + + +L L +L + LTDV + +AHK VL ACS F +F
Sbjct: 1 GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFT 60
Query: 101 EIDGYQHPVIIL-PGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLAD 156
+ VI L P + L+ FMY +N+ + + ++++ A L + + D
Sbjct: 61 DQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 117
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 71 DVTL---SAGGRHMKAHKVVLSACSHYFKQL----FKEIDGYQ---HPVIILPGVEFNDL 120
D+TL AGGR +AH+ VL+A + YF L F E + PG E + +
Sbjct: 34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTV 93
Query: 121 YALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTG 159
A++ + Y G + + + +L +AD + L +F G
Sbjct: 94 EAVIEYXYTGRIRVSTGSVHEVLELADRFLLIRLKEFCG 132
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 71 DVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYA-LVTFMYN 129
D TL GG KAH VL+ CSH+F++++ DG V++ G F +++ L+ F Y
Sbjct: 27 DATLDVGGLVFKAHWSVLACCSHFFQRIYG--DGTGGSVVLPAG--FAEIFGLLLDFFYT 82
Query: 130 GEVNIYQQQLSSLLSMADALHI 151
G + + +L A L +
Sbjct: 83 GHLALTSGNRDQVLLAAKELRV 104
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 71 DVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYA-LVTFMYN 129
D TL GG KAH VL+ CSH+F+ L+ DG V++ G F +++ L+ F Y
Sbjct: 26 DATLDVGGLVFKAHWSVLACCSHFFQSLYG--DGSGGSVVLPAG--FAEIFGLLLDFFYT 81
Query: 130 GEVNIYQQQLSSLLSMADALHI 151
G + + +L A L +
Sbjct: 82 GHLALTSGNRDQVLLAARELRV 103
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 52 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYF-KQLFKEIDGYQHPVI 110
+ T++L +L + L DVT+ G+ +AH+ VL+ACS YF ++ + DG + I
Sbjct: 12 HSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELN--I 69
Query: 111 ILP-GVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLAD 156
LP V L+ F Y ++ + ++ + + + L + + +
Sbjct: 70 TLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEE 116
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 53 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVII 111
+ L L L + TD L G+ +AHK +L+A S F +F+ E++ + +
Sbjct: 158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVE 217
Query: 112 LPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGL 154
+ VE ++ F+Y G+ + LL+ AD + L
Sbjct: 218 INDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 260
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 53 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVII 111
+ L L L + TD L G+ +AHK +L+A S F +F+ E++ + +
Sbjct: 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVE 68
Query: 112 LPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGL 154
+ VE ++ F+Y G+ + LL+ AD + L
Sbjct: 69 INDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 111
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 39 LDGSQQFCLRWHNYQTSLLATL-PQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQ 97
L +Q + N+ S+L L Q L G DV++ G KAH+ VL+A S YF+
Sbjct: 3 LGSAQTLQMEIPNFGNSILECLNEQRLQGL-YCDVSVVVKGHAFKAHRAVLAASSSYFRD 61
Query: 98 LFKEIDGYQHPVIILP-GVEFNDLYALVTFMYNGEVNI 134
LF + + V+ LP V+ +++F Y G +++
Sbjct: 62 LF---NNSRSAVVELPAAVQPQSFQQILSFCYTGRLSM 96
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 54 TSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILP 113
T++L L + L DVTL + +AH+ VL+ACS YF Q V +
Sbjct: 17 TNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPE 76
Query: 114 GVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLAD 156
V L+ F Y ++ + ++ + ++ A+ L + L D
Sbjct: 77 EVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLED 119
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 52 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYF-KQLFKEIDGYQHPVI 110
+ T++L +L + L DVT+ G+ +AH+ VL+ACS YF ++ + D + V
Sbjct: 19 HSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDA-ELTVT 77
Query: 111 ILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLAD 156
+ V L+ F Y ++ + + + + + L + + +
Sbjct: 78 LPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEE 123
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 52 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 99
Y SLL +L + DVT+ R +AHK +LSA S YF QLF
Sbjct: 14 YSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF 61
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM I
Length = 124
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 52 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 99
Y SLL +L + DVT+ R +AHK +LSA S YF QLF
Sbjct: 16 YSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF 63
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 56 LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGV 115
LL L + + L D T+ G KAH+ VL++ S YF +++ + + V
Sbjct: 9 LLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST-SENNVFLDQSQV 67
Query: 116 EFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIR 152
+ + L+ F+Y G +N+ + + AD L +
Sbjct: 68 KADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVE 104
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 53 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVII 111
+ L L L + TD L G+ +AHK +L+A S F F+ E + + +
Sbjct: 18 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVE 77
Query: 112 LPGVEFNDLYALVTFMYNGEV 132
+ VE F+Y G+
Sbjct: 78 INDVEPEVFKEXXCFIYTGKA 98
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
pdb|1BKN|B Chain B, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
Length = 352
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 98 LFKEIDGYQHPVIILPG---VEFNDLYALVTFMYNGEVNIYQQQLSSLLSMAD 147
L+ EID +Q V + P V F+ + F+Y G +++ QQQL + L + D
Sbjct: 293 LYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDD 345
>pdb|1B62|A Chain A, Mutl Complexed With Adp
Length = 355
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 98 LFKEIDGYQHPVIILPG---VEFNDLYALVTFMYNGEVNIYQQQLSSLLSMAD 147
L+ EID +Q V + P V F+ + F+Y G +++ QQQL + L + D
Sbjct: 296 LYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDD 348
>pdb|3IPW|A Chain A, Crystal Structure Of Hydrolase Tatd Family Protein From
Entamoeba Histolytica
Length = 325
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 67 EDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQH 107
E+ DV L R+ +H ++ S C + FK+ + I+ YQ+
Sbjct: 51 EEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEIINKYQN 91
>pdb|1GNW|A Chain A, Structure Of Glutathione S-Transferase
pdb|1GNW|B Chain B, Structure Of Glutathione S-Transferase
pdb|1BX9|A Chain A, Glutathione S-Transferase In Complex With Herbicide
Length = 211
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 42 SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKE 101
+Q R+ N T+LL T D ++++ + A G ++ H+ A F+Q+FK
Sbjct: 71 TQYIAHRYENQGTNLLQT-----DSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKS 125
Query: 102 IDG 104
I G
Sbjct: 126 IYG 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,040,647
Number of Sequences: 62578
Number of extensions: 177751
Number of successful extensions: 529
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 24
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)