Query psy11355
Match_columns 177
No_of_seqs 195 out of 1434
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 16:16:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 4.8E-25 1E-29 192.6 11.7 123 48-172 4-129 (557)
2 KOG4441|consensus 99.9 1.4E-24 3.1E-29 189.8 10.0 127 46-172 13-140 (571)
3 PHA02790 Kelch-like protein; P 99.9 6E-23 1.3E-27 176.7 7.6 115 56-172 9-126 (480)
4 PF00651 BTB: BTB/POZ domain; 99.9 7.7E-22 1.7E-26 137.4 7.4 104 60-163 1-108 (111)
5 PHA03098 kelch-like protein; P 99.8 2.7E-21 6E-26 168.1 8.7 103 66-172 6-111 (534)
6 KOG4350|consensus 99.8 9E-20 2E-24 149.7 7.7 120 53-172 28-151 (620)
7 smart00225 BTB Broad-Complex, 99.8 5.2E-19 1.1E-23 117.2 8.9 89 71-159 1-90 (90)
8 KOG4591|consensus 99.6 1.5E-15 3.2E-20 114.7 5.7 119 51-171 48-171 (280)
9 KOG2075|consensus 99.6 1.1E-14 2.3E-19 121.9 9.4 119 48-166 93-217 (521)
10 KOG4682|consensus 99.2 5.6E-11 1.2E-15 98.0 7.4 108 60-168 60-172 (488)
11 KOG0783|consensus 98.9 9.7E-10 2.1E-14 97.6 4.1 100 68-167 709-816 (1267)
12 KOG0783|consensus 98.8 1.9E-08 4.1E-13 89.6 6.8 66 66-131 555-633 (1267)
13 KOG2838|consensus 98.3 1.5E-06 3.2E-11 69.1 6.3 101 53-153 114-220 (401)
14 KOG2716|consensus 98.2 7.7E-06 1.7E-10 63.9 8.7 93 72-165 7-104 (230)
15 PF02214 BTB_2: BTB/POZ domain 98.1 7.5E-06 1.6E-10 55.3 5.3 86 72-158 1-94 (94)
16 KOG2838|consensus 98.0 1.1E-05 2.4E-10 64.3 5.2 110 56-165 222-387 (401)
17 KOG3473|consensus 97.8 0.00023 5.1E-09 48.0 8.1 79 72-151 19-112 (112)
18 smart00512 Skp1 Found in Skp1 97.7 0.00023 5.1E-09 49.0 7.5 79 72-151 4-104 (104)
19 PF03931 Skp1_POZ: Skp1 family 97.4 0.0017 3.7E-08 40.5 7.4 55 72-128 3-58 (62)
20 PF11822 DUF3342: Domain of un 97.2 0.00036 7.9E-09 56.9 3.9 83 79-161 14-99 (317)
21 KOG0511|consensus 97.1 0.00036 7.8E-09 58.1 2.4 73 79-152 301-378 (516)
22 KOG1724|consensus 97.0 0.0049 1.1E-07 45.9 7.8 90 77-167 13-128 (162)
23 KOG2714|consensus 96.7 0.0061 1.3E-07 51.5 7.2 93 72-165 13-114 (465)
24 KOG0511|consensus 96.6 0.00098 2.1E-08 55.5 1.7 89 69-158 149-238 (516)
25 KOG1987|consensus 96.3 0.0016 3.4E-08 52.8 0.9 91 78-168 109-203 (297)
26 COG5201 SKP1 SCF ubiquitin lig 95.9 0.043 9.4E-07 39.2 6.7 94 71-166 3-122 (158)
27 KOG1665|consensus 95.1 0.072 1.6E-06 41.7 6.0 88 72-160 11-105 (302)
28 KOG2715|consensus 94.5 0.14 3.1E-06 38.2 5.9 92 72-163 23-119 (210)
29 PF01466 Skp1: Skp1 family, di 91.6 0.23 4.9E-06 32.3 3.0 35 133-167 10-44 (78)
30 KOG2723|consensus 79.3 11 0.00023 29.6 6.9 55 115-169 57-113 (221)
31 KOG3840|consensus 65.7 16 0.00034 30.3 5.1 83 71-153 97-186 (438)
32 KOG1778|consensus 56.5 2.2 4.8E-05 35.3 -1.3 56 75-130 32-88 (319)
33 PF03969 AFG1_ATPase: AFG1-lik 47.9 39 0.00084 28.5 4.8 133 2-144 182-335 (362)
34 PF02519 Auxin_inducible: Auxi 33.4 1.6E+02 0.0034 20.0 6.1 53 72-127 41-99 (100)
35 KOG3713|consensus 32.3 1.3E+02 0.0029 26.4 5.6 82 71-153 32-126 (477)
36 PF06200 tify: tify domain; I 31.8 37 0.00081 18.6 1.5 21 127-147 11-35 (36)
37 PF09593 Pathogen_betaC1: Beta 27.0 2.3E+02 0.005 19.9 5.3 72 77-151 20-95 (117)
38 PTZ00348 tyrosyl-tRNA syntheta 26.5 2E+02 0.0044 26.6 6.1 89 52-158 390-488 (682)
39 KOG3342|consensus 26.4 36 0.00079 25.2 1.1 18 70-87 81-100 (180)
40 PF07707 BACK: BTB And C-termi 22.4 77 0.0017 20.5 2.1 24 140-163 2-25 (103)
41 KOG4682|consensus 22.2 66 0.0014 27.8 2.0 31 133-163 169-199 (488)
42 PHA03098 kelch-like protein; P 21.3 97 0.0021 27.1 3.1 30 133-162 104-133 (534)
43 PF06404 PSK: Phytosulfokine p 20.1 40 0.00086 22.1 0.3 14 118-131 65-78 (81)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.92 E-value=4.8e-25 Score=192.63 Aligned_cols=123 Identities=24% Similarity=0.333 Sum_probs=114.0
Q ss_pred ccCchHHHHHHHHHHHhcCCCcccEEEEeC-CeEEEeehhhhhccChHHHHhhc-cccCCC-CCEEEeCCCCHHHHHHHH
Q psy11355 48 RWHNYQTSLLATLPQLLDGEDLTDVTLSAG-GRHMKAHKVVLSACSHYFKQLFK-EIDGYQ-HPVIILPGVEFNDLYALV 124 (177)
Q Consensus 48 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~-~~~i~l~~~~~~~~~~~L 124 (177)
....|...+++.|+++|+++.+|||+|.++ |++|+|||.|||++|+||++||+ ++.|.. ..+|.|.++++++++.+|
T Consensus 4 ~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll 83 (557)
T PHA02713 4 DDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIV 83 (557)
T ss_pred chhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHH
Confidence 345678999999999999999999999997 89999999999999999999999 777654 788999999999999999
Q ss_pred HHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhcccccee
Q psy11355 125 TFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVTSGHVL 172 (177)
Q Consensus 125 ~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~~~~~ 172 (177)
+|+|||+ ++.+++++++.+|++|+++.|++.|.+.+..-++..+++
T Consensus 84 ~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl 129 (557)
T PHA02713 84 QYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCI 129 (557)
T ss_pred HHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchH
Confidence 9999997 689999999999999999999999999999988888764
No 2
>KOG4441|consensus
Probab=99.91 E-value=1.4e-24 Score=189.77 Aligned_cols=127 Identities=30% Similarity=0.424 Sum_probs=121.0
Q ss_pred eeccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCCCCHHHHHHHH
Q psy11355 46 CLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLYALV 124 (177)
Q Consensus 46 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~~~~~~~~~~L 124 (177)
.+..+.|...+++.++.+|+++.+|||++.+++++|+|||.||||+|+||++||+ ++.|+.+.+|.+.++++.+++.++
T Consensus 13 ~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll 92 (571)
T KOG4441|consen 13 EFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLL 92 (571)
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHH
Confidence 3456678999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhcccccee
Q psy11355 125 TFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVTSGHVL 172 (177)
Q Consensus 125 ~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~~~~~ 172 (177)
+|+|||++.++.+++++|+.+|++|||+.+++.|.+.+..-+...+++
T Consensus 93 ~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Ncl 140 (571)
T KOG4441|consen 93 DYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCL 140 (571)
T ss_pred HHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999999999999999999999888777765
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.88 E-value=6e-23 Score=176.72 Aligned_cols=115 Identities=12% Similarity=0.168 Sum_probs=103.1
Q ss_pred HHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEe--CCCCHHHHHHHHHHHcCCCC
Q psy11355 56 LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIIL--PGVEFNDLYALVTFMYNGEV 132 (177)
Q Consensus 56 l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l--~~~~~~~~~~~L~fiYtg~i 132 (177)
..+.+-.++.++.+|||++.+ |++|+|||.|||++|+||++||. ++.|+.. .|.+ .++++++++.+|+|+|||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l 86 (480)
T PHA02790 9 YCKNILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKV 86 (480)
T ss_pred hhhhHHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeE
Confidence 455677889999999988775 55999999999999999999999 7888754 4554 48999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhcccccee
Q psy11355 133 NIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVTSGHVL 172 (177)
Q Consensus 133 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~~~~~ 172 (177)
.++.+++++++.+|++|+++.+++.|.+.+..-++..+++
T Consensus 87 ~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl 126 (480)
T PHA02790 87 YIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCV 126 (480)
T ss_pred EEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHH
Confidence 9999999999999999999999999999999998888865
No 4
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.86 E-value=7.7e-22 Score=137.42 Aligned_cols=104 Identities=33% Similarity=0.560 Sum_probs=92.0
Q ss_pred HHHHhcCCCcccEEEEeC-CeEEEeehhhhhccChHHHHhhccc--cCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCC-
Q psy11355 60 LPQLLDGEDLTDVTLSAG-GRHMKAHKVVLSACSHYFKQLFKEI--DGYQHPVIILPGVEFNDLYALVTFMYNGEVNIY- 135 (177)
Q Consensus 60 l~~l~~~~~~~Dv~l~v~-~~~~~aHr~vLaa~S~~F~~lf~~~--~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~- 135 (177)
|+++++++.++|++|.++ +..|+|||.+|+++|+||+.+|.+. .+.....|.++++++++|+.+++|+|+|.+.++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 578899999999999999 7999999999999999999999843 444445788999999999999999999999998
Q ss_pred HHHHHHHHHHhhhcCcccHHHHHhhhhh
Q psy11355 136 QQQLSSLLSMADALHIRGLADFTGMVSV 163 (177)
Q Consensus 136 ~~~v~~ll~~A~~l~i~~L~~~c~~~~~ 163 (177)
.+++.+++.+|++|+++.|++.|.+.+.
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.85 E-value=2.7e-21 Score=168.08 Aligned_cols=103 Identities=26% Similarity=0.501 Sum_probs=96.3
Q ss_pred CCCcccEEEEe--CCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHHHHHHH
Q psy11355 66 GEDLTDVTLSA--GGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSL 142 (177)
Q Consensus 66 ~~~~~Dv~l~v--~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~~v~~l 142 (177)
++.+|||+|.+ +|++|+|||.||+++|+||++||. ++. ...|.+++ ++++|+.+|+|+|||++.++.+++.++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l 81 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI 81 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence 88999999998 999999999999999999999998 544 57899999 999999999999999999999999999
Q ss_pred HHHhhhcCcccHHHHHhhhhhhhcccccee
Q psy11355 143 LSMADALHIRGLADFTGMVSVIIVTSGHVL 172 (177)
Q Consensus 143 l~~A~~l~i~~L~~~c~~~~~~~~~~~~~~ 172 (177)
+.+|++|+++.|++.|++.+...++.++++
T Consensus 82 l~~A~~l~~~~l~~~C~~~l~~~l~~~nc~ 111 (534)
T PHA03098 82 LSIANYLIIDFLINLCINYIIKIIDDNNCI 111 (534)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCHhHHH
Confidence 999999999999999999999888877654
No 6
>KOG4350|consensus
Probab=99.80 E-value=9e-20 Score=149.68 Aligned_cols=120 Identities=23% Similarity=0.380 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCCCCHHHHHHHHHHHcCCC
Q psy11355 53 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLYALVTFMYNGE 131 (177)
Q Consensus 53 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~ 131 (177)
+.+..+.+..++.+..++||++++++++|+|||+|||+||.|||+++. ++.|+.+..|.+++...++|+.+|+|||||+
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~ 107 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGK 107 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcc
Confidence 455678888999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCC---CHHHHHHHHHHhhhcCcccHHHHHhhhhhhhcccccee
Q psy11355 132 VNI---YQQQLSSLLSMADALHIRGLADFTGMVSVIIVTSGHVL 172 (177)
Q Consensus 132 i~~---~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~~~~~ 172 (177)
+.+ .++.+.+.+.+|.+|++..|.....+.+..++...+++
T Consensus 108 ~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvC 151 (620)
T KOG4350|consen 108 IDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVC 151 (620)
T ss_pred eecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHccccee
Confidence 876 45678899999999999999999999999998888776
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.79 E-value=5.2e-19 Score=117.25 Aligned_cols=89 Identities=42% Similarity=0.733 Sum_probs=83.0
Q ss_pred cEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhhc
Q psy11355 71 DVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADAL 149 (177)
Q Consensus 71 Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~~v~~ll~~A~~l 149 (177)
|+++.++|+.|++||.+|+++|+||+.+|. ++.+.....+.+++.++.+|+.+++|+|+|++.++..++..++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 788999999999999999999999999998 5555567889999999999999999999999999999999999999999
Q ss_pred CcccHHHHHh
Q psy11355 150 HIRGLADFTG 159 (177)
Q Consensus 150 ~i~~L~~~c~ 159 (177)
+++.|.+.|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999985
No 8
>KOG4591|consensus
Probab=99.59 E-value=1.5e-15 Score=114.69 Aligned_cols=119 Identities=21% Similarity=0.370 Sum_probs=101.0
Q ss_pred chHHHHHHHHHHHhcCCCcccEEEEeC---CeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHHHHHHHHH
Q psy11355 51 NYQTSLLATLPQLLDGEDLTDVTLSAG---GRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFM 127 (177)
Q Consensus 51 ~~~~~l~~~l~~l~~~~~~~Dv~l~v~---~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~~~~L~fi 127 (177)
++.++++.-..+++..++|+|++++++ ++.++|||.|||+||++++ |.+.......+..+.++++++|...++||
T Consensus 48 SF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iRWI 125 (280)
T KOG4591|consen 48 SFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIRWI 125 (280)
T ss_pred hHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhheee
Confidence 357899999999999999999999997 5789999999999999986 33323333456778899999999999999
Q ss_pred cCCCCCCCH--HHHHHHHHHhhhcCcccHHHHHhhhhhhhccccce
Q psy11355 128 YNGEVNIYQ--QQLSSLLSMADALHIRGLADFTGMVSVIIVTSGHV 171 (177)
Q Consensus 128 Ytg~i~~~~--~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~~~~ 171 (177)
||+++.+.. ..+.++.++|..|+++-|++.|++-+...+.-.++
T Consensus 126 YTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NC 171 (280)
T KOG4591|consen 126 YTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNC 171 (280)
T ss_pred eccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhH
Confidence 999998865 45689999999999999999999988877665554
No 9
>KOG2075|consensus
Probab=99.57 E-value=1.1e-14 Score=121.86 Aligned_cols=119 Identities=24% Similarity=0.341 Sum_probs=107.9
Q ss_pred ccCchHHHHHHHHHHHhcCCCcccEEEEeCC-----eEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCCCCHHHHH
Q psy11355 48 RWHNYQTSLLATLPQLLDGEDLTDVTLSAGG-----RHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLY 121 (177)
Q Consensus 48 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~-----~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~~~~~~~~ 121 (177)
.|..-..++......++++...+|+.+++++ +.++|||.|||..|..|.+||. ++.+....+|.++++.+.+|.
T Consensus 93 nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl 172 (521)
T KOG2075|consen 93 NWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFL 172 (521)
T ss_pred ccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhH
Confidence 3444468888889999999999999999963 6899999999999999999999 666666789999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhc
Q psy11355 122 ALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIV 166 (177)
Q Consensus 122 ~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~ 166 (177)
.+|+|+|++.+.+..+++..++.+|++|-++.|.+.|-++++..+
T Consensus 173 ~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l 217 (521)
T KOG2075|consen 173 AFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNL 217 (521)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999877654
No 10
>KOG4682|consensus
Probab=99.19 E-value=5.6e-11 Score=98.01 Aligned_cols=108 Identities=26% Similarity=0.329 Sum_probs=96.4
Q ss_pred HHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeC----CCCHHHHHHHHHHHcCCCCCC
Q psy11355 60 LPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILP----GVEFNDLYALVTFMYNGEVNI 134 (177)
Q Consensus 60 l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~----~~~~~~~~~~L~fiYtg~i~~ 134 (177)
.+.++.++..+||++.+-|.+++.||..|. .|+||.+||. .+.|++...|.+. .++..++..++.-+|.++++|
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 456888999999999999999999999985 5899999999 7888888877664 599999999999999999999
Q ss_pred CHHHHHHHHHHhhhcCcccHHHHHhhhhhhhccc
Q psy11355 135 YQQQLSSLLSMADALHIRGLADFTGMVSVIIVTS 168 (177)
Q Consensus 135 ~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~ 168 (177)
..+.+..++.+|.++++++|.+-|.+.-..-++.
T Consensus 139 ~l~dv~gvlAaA~~lqldgl~qrC~evMie~lsp 172 (488)
T KOG4682|consen 139 KLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSP 172 (488)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCh
Confidence 9999999999999999999999998875555443
No 11
>KOG0783|consensus
Probab=98.91 E-value=9.7e-10 Score=97.58 Aligned_cols=100 Identities=22% Similarity=0.345 Sum_probs=78.6
Q ss_pred CcccEEEEe-CCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCCCCHHHHHHHHHHHcC-CCCCC-----CHHHH
Q psy11355 68 DLTDVTLSA-GGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLYALVTFMYN-GEVNI-----YQQQL 139 (177)
Q Consensus 68 ~~~Dv~l~v-~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~~~~~~~~~~L~fiYt-g~i~~-----~~~~v 139 (177)
..-|+.|.. +|++++||+++|++|++||..||. -+.|...-.+....+..+.++.+|+|+|+ ++..+ ..+.+
T Consensus 709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred cceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 344666655 778899999999999999999998 66676654555545669999999999994 44433 23556
Q ss_pred HHHHHHhhhcCcccHHHHHhhhhhhhcc
Q psy11355 140 SSLLSMADALHIRGLADFTGMVSVIIVT 167 (177)
Q Consensus 140 ~~ll~~A~~l~i~~L~~~c~~~~~~~~~ 167 (177)
-+++..|+.|-+.+|+++|+..+..-++
T Consensus 789 ~~il~iaDqlli~~Lk~Ice~~ll~kl~ 816 (1267)
T KOG0783|consen 789 FEILSIADQLLILELKSICEQSLLRKLN 816 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 7899999999999999999988765543
No 12
>KOG0783|consensus
Probab=98.75 E-value=1.9e-08 Score=89.63 Aligned_cols=66 Identities=23% Similarity=0.384 Sum_probs=54.5
Q ss_pred CCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCC------------CCEEEeCCCCHHHHHHHHHHHcCCC
Q psy11355 66 GEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQ------------HPVIILPGVEFNDLYALVTFMYNGE 131 (177)
Q Consensus 66 ~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~------------~~~i~l~~~~~~~~~~~L~fiYtg~ 131 (177)
...+.||++.||+..|+|||.||+++|++|+.+|. ..+.+. ...|.+.++++.+|+.+|.||||+.
T Consensus 555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDT 633 (1267)
T ss_pred ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccc
Confidence 35678999999999999999999999999999987 222211 1355577899999999999999984
No 13
>KOG2838|consensus
Probab=98.32 E-value=1.5e-06 Score=69.14 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhccccCCC---CCEEEeCCCCHHHHHHHHHHHcC
Q psy11355 53 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQ---HPVIILPGVEFNDLYALVTFMYN 129 (177)
Q Consensus 53 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~---~~~i~l~~~~~~~~~~~L~fiYt 129 (177)
..++++++.+.+......|+-|+....-|+|||.+|++||++|+.+.....+.. .-.|.+-+++.++|+.+|.|+|+
T Consensus 114 a~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~t 193 (401)
T KOG2838|consen 114 ANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLIT 193 (401)
T ss_pred hhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHh
Confidence 567778888888888888999999999999999999999999998876222222 13455567899999999999999
Q ss_pred CCCCCC---HHHHHHHHHHhhhcCccc
Q psy11355 130 GEVNIY---QQQLSSLLSMADALHIRG 153 (177)
Q Consensus 130 g~i~~~---~~~v~~ll~~A~~l~i~~ 153 (177)
|+.-.. -.++.-|.+++.-||...
T Consensus 194 gEfgmEd~~fqn~diL~QL~edFG~~k 220 (401)
T KOG2838|consen 194 GEFGMEDLGFQNSDILEQLCEDFGCFK 220 (401)
T ss_pred cccchhhcCCchHHHHHHHHHhhCCch
Confidence 987543 356667777777777654
No 14
>KOG2716|consensus
Probab=98.24 E-value=7.7e-06 Score=63.94 Aligned_cols=93 Identities=23% Similarity=0.440 Sum_probs=76.6
Q ss_pred EEEEeCCeEEEeehhhhhccChHHHHhhc-cc--cCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHh
Q psy11355 72 VTLSAGGRHMKAHKVVLSACSHYFKQLFK-EI--DGYQHPVIILPGVEFNDLYALVTFMYNGEVNI--YQQQLSSLLSMA 146 (177)
Q Consensus 72 v~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~--~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~--~~~~v~~ll~~A 146 (177)
+.+-|||..|...+.-|.....+|+.|+. +. .....+.|-+ |=+|.-|..+|+||=.|.+.+ +..++.+|++=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 45788999999999999999999999998 32 2222344555 459999999999999887766 456788999999
Q ss_pred hhcCcccHHHHHhhhhhhh
Q psy11355 147 DALHIRGLADFTGMVSVII 165 (177)
Q Consensus 147 ~~l~i~~L~~~c~~~~~~~ 165 (177)
.+|.+++|++.|+......
T Consensus 86 ~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHhhHHHHHHHHHHHhhhc
Confidence 9999999999999976655
No 15
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=98.09 E-value=7.5e-06 Score=55.31 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=65.1
Q ss_pred EEEEeCCeEEEeehhhhh-ccChHHHHhhcc----ccCCCCCEEEeCCCCHHHHHHHHHHHcC-CCCCCC-HHHHHHHHH
Q psy11355 72 VTLSAGGRHMKAHKVVLS-ACSHYFKQLFKE----IDGYQHPVIILPGVEFNDLYALVTFMYN-GEVNIY-QQQLSSLLS 144 (177)
Q Consensus 72 v~l~v~~~~~~aHr~vLa-a~S~~F~~lf~~----~~e~~~~~i~l~~~~~~~~~~~L~fiYt-g~i~~~-~~~v~~ll~ 144 (177)
|.|.|||+.|.+-+..|. ....+|..++.. ........+.+ |=++..|+.+|+|+-+ |.+..+ ...+..+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 678999999999999998 556788888872 22344567766 4699999999999999 676654 567889999
Q ss_pred HhhhcCcccH-HHHH
Q psy11355 145 MADALHIRGL-ADFT 158 (177)
Q Consensus 145 ~A~~l~i~~L-~~~c 158 (177)
-|++|+++.+ ++.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 7776
No 16
>KOG2838|consensus
Probab=97.99 E-value=1.1e-05 Score=64.25 Aligned_cols=110 Identities=20% Similarity=0.250 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCCcccEEEE-e-CC--------------eEEEeehhhhhccChHHHHhhc-cccC---C------CCCE
Q psy11355 56 LLATLPQLLDGEDLTDVTLS-A-GG--------------RHMKAHKVVLSACSHYFKQLFK-EIDG---Y------QHPV 109 (177)
Q Consensus 56 l~~~l~~l~~~~~~~Dv~l~-v-~~--------------~~~~aHr~vLaa~S~~F~~lf~-~~~e---~------~~~~ 109 (177)
+-.++..+++.....|++|+ + +| .++.||+.|.++||++||.++. ...+ . ....
T Consensus 222 Ld~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkR 301 (401)
T KOG2838|consen 222 LDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKR 301 (401)
T ss_pred hhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCce
Confidence 33344556665555555543 2 22 2588999999999999999886 2222 1 1246
Q ss_pred EEeCC-CCHHHH-HHHHHHHcCCCCCCC----------------------------HHHHHHHHHHhhhcCcccHHHHHh
Q psy11355 110 IILPG-VEFNDL-YALVTFMYNGEVNIY----------------------------QQQLSSLLSMADALHIRGLADFTG 159 (177)
Q Consensus 110 i~l~~-~~~~~~-~~~L~fiYtg~i~~~----------------------------~~~v~~ll~~A~~l~i~~L~~~c~ 159 (177)
|.+.+ +=|..| -.++.++||+.+.++ .....+|+..|-+|.++-|.+.|+
T Consensus 302 IifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e 381 (401)
T KOG2838|consen 302 IIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACE 381 (401)
T ss_pred eechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765 344444 456899999876422 123458899999999999999998
Q ss_pred hhhhhh
Q psy11355 160 MVSVII 165 (177)
Q Consensus 160 ~~~~~~ 165 (177)
......
T Consensus 382 ~Vir~a 387 (401)
T KOG2838|consen 382 DVIRKA 387 (401)
T ss_pred HHHHhh
Confidence 876544
No 17
>KOG3473|consensus
Probab=97.80 E-value=0.00023 Score=48.02 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=63.3
Q ss_pred EEEEe-CCeEEEeehhhhhccChHHHHhhc---cccCCCCCEEEeCCCCHHHHHHHHHHH-----cCCC------CCCCH
Q psy11355 72 VTLSA-GGRHMKAHKVVLSACSHYFKQLFK---EIDGYQHPVIILPGVEFNDLYALVTFM-----YNGE------VNIYQ 136 (177)
Q Consensus 72 v~l~v-~~~~~~aHr~vLaa~S~~F~~lf~---~~~e~~~~~i~l~~~~~~~~~~~L~fi-----Ytg~------i~~~~ 136 (177)
|.++. +|.+|-.-|.+ |.-|+-.|+|+. ...+...+++.+++++...++.+..|+ |++. .++.+
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 44444 57888887765 788999999998 345566788999999999999999998 4443 46788
Q ss_pred HHHHHHHHHhhhcCc
Q psy11355 137 QQLSSLLSMADALHI 151 (177)
Q Consensus 137 ~~v~~ll~~A~~l~i 151 (177)
+-+.+||.+|++|.+
T Consensus 98 emaleLL~aAn~Lec 112 (112)
T KOG3473|consen 98 EMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHHhhhhcC
Confidence 999999999999863
No 18
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.71 E-value=0.00023 Score=48.99 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=59.6
Q ss_pred EEEEe-CCeEEEeehhhhhccChHHHHhhcccc--CCCCCEEEeCCCCHHHHHHHHHHHcCCC-----------C-----
Q psy11355 72 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKEID--GYQHPVIILPGVEFNDLYALVTFMYNGE-----------V----- 132 (177)
Q Consensus 72 v~l~v-~~~~~~aHr~vLaa~S~~F~~lf~~~~--e~~~~~i~l~~~~~~~~~~~L~fiYtg~-----------i----- 132 (177)
++++. +|.+|.+.+.+. ..|..++.++.+.. ......|.+++++..+++.+++|++.-. +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 55555 788999999875 68999999997322 2222579999999999999999996321 1
Q ss_pred ---CCCHHHHHHHHHHhhhcCc
Q psy11355 133 ---NIYQQQLSSLLSMADALHI 151 (177)
Q Consensus 133 ---~~~~~~v~~ll~~A~~l~i 151 (177)
.++.+.+.+|+.||++|++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 1555678899999999875
No 19
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.37 E-value=0.0017 Score=40.47 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=43.5
Q ss_pred EEEEe-CCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHHHHHHHHHc
Q psy11355 72 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMY 128 (177)
Q Consensus 72 v~l~v-~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~~~~L~fiY 128 (177)
++++. +|+.|.+.+.+. ..|..++.++.+...... .|.+++++...++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~-~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE-PIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT-EEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc-ccccCccCHHHHHHHHHHHH
Confidence 45555 788999999884 689999999984333333 79999999999999999986
No 20
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.21 E-value=0.00036 Score=56.93 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=68.6
Q ss_pred eEEEeehhhhhccChHHHHhhcc-c-cCCCCCEEEeC-CCCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhhcCcccHH
Q psy11355 79 RHMKAHKVVLSACSHYFKQLFKE-I-DGYQHPVIILP-GVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLA 155 (177)
Q Consensus 79 ~~~~aHr~vLaa~S~~F~~lf~~-~-~e~~~~~i~l~-~~~~~~~~~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~ 155 (177)
+.|.|.+-.|-..=.||+..+.. . .....++|.|. +.+..+|+.+++|+......+++.|+..++.-|++|+|+.|+
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 67999999999999999999852 1 22233456665 578899999999999988999999999999999999999999
Q ss_pred HHHhhh
Q psy11355 156 DFTGMV 161 (177)
Q Consensus 156 ~~c~~~ 161 (177)
+.|-..
T Consensus 94 e~cl~y 99 (317)
T PF11822_consen 94 EECLQY 99 (317)
T ss_pred HHHHHH
Confidence 854433
No 21
>KOG0511|consensus
Probab=97.06 E-value=0.00036 Score=58.06 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=58.0
Q ss_pred eEEEeehhhhhccChHHHHhhc-cccCCC----CCEEEeCCCCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhhcCcc
Q psy11355 79 RHMKAHKVVLSACSHYFKQLFK-EIDGYQ----HPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIR 152 (177)
Q Consensus 79 ~~~~aHr~vLaa~S~~F~~lf~-~~~e~~----~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i~ 152 (177)
..+|||+.++.. ..||+.||. ++.++. .+...++.....+.+.+++|+|+.+..+..+-..+++-.|+++.+.
T Consensus 301 ~RyP~hla~i~R-~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 301 DRYPAHLARILR-VEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALA 378 (516)
T ss_pred ccccHHHHHHHH-HHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhh
Confidence 459999999854 579999998 555532 2455677788899999999999999988888888888888777555
No 22
>KOG1724|consensus
Probab=97.01 E-value=0.0049 Score=45.92 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=69.0
Q ss_pred CCeEEEeehhhhhccChHHHHhhccccC-CCCCEEEeCCCCHHHHHHHHHHHcCCCC-----------------------
Q psy11355 77 GGRHMKAHKVVLSACSHYFKQLFKEIDG-YQHPVIILPGVEFNDLYALVTFMYNGEV----------------------- 132 (177)
Q Consensus 77 ~~~~~~aHr~vLaa~S~~F~~lf~~~~e-~~~~~i~l~~~~~~~~~~~L~fiYtg~i----------------------- 132 (177)
+|+.|.+-..+ +..|..+.+++....- .....|.+++|....|..+++|++.-+-
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 68889988877 5667888887762111 1114799999999999999999986221
Q ss_pred --CCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhcc
Q psy11355 133 --NIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVT 167 (177)
Q Consensus 133 --~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~ 167 (177)
.+...++.++..+|++|++++|.++|.+..+.++-
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 13345788999999999999999999999887763
No 23
>KOG2714|consensus
Probab=96.74 E-value=0.0061 Score=51.53 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=69.3
Q ss_pred EEEEeCCeEEEeehhhhhccC--hHHHHhhc-cccCC--CCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHHHHHHHH-HH
Q psy11355 72 VTLSAGGRHMKAHKVVLSACS--HYFKQLFK-EIDGY--QHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLL-SM 145 (177)
Q Consensus 72 v~l~v~~~~~~aHr~vLaa~S--~~F~~lf~-~~~e~--~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~~v~~ll-~~ 145 (177)
|.+.|||+.|.-.+.-|+... .+|.+++. .+... ....|-+ |=+|+.|..+|+|+-||+++++.-....++ .=
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhdE 91 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHDE 91 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhhh
Confidence 567889999999888887765 68888886 22222 2223444 468999999999999999999765555544 49
Q ss_pred hhhcCcccHHH---HHhhhhhhh
Q psy11355 146 ADALHIRGLAD---FTGMVSVII 165 (177)
Q Consensus 146 A~~l~i~~L~~---~c~~~~~~~ 165 (177)
|.+|++..+.+ +|++.|-..
T Consensus 92 A~fYGl~~llrrl~~~~~~F~Gf 114 (465)
T KOG2714|consen 92 AMFYGLTPLLRRLTLCEELFDGF 114 (465)
T ss_pred hhhcCcHHHHHHhhcCccccccc
Confidence 99999999876 677665443
No 24
>KOG0511|consensus
Probab=96.63 E-value=0.00098 Score=55.53 Aligned_cols=89 Identities=19% Similarity=0.148 Sum_probs=65.4
Q ss_pred cccEEEEe-CCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhh
Q psy11355 69 LTDVTLSA-GGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMAD 147 (177)
Q Consensus 69 ~~Dv~l~v-~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~~v~~ll~~A~ 147 (177)
..|+++.. +|..|-||+..|+++|.+|...+..... ...+|.--.+-+.+|..+++|+|-..-.+..+...+++.+..
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~-~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~ 227 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV-QGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEV 227 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc-ccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhh
Confidence 35777765 6888999999999999988765542221 223454445778999999999998755566677788888888
Q ss_pred hcCcccHHHHH
Q psy11355 148 ALHIRGLADFT 158 (177)
Q Consensus 148 ~l~i~~L~~~c 158 (177)
+|+++.+....
T Consensus 228 kF~~e~l~~~~ 238 (516)
T KOG0511|consen 228 KFSKEKLSLEI 238 (516)
T ss_pred hccHHHhHHHH
Confidence 88888775443
No 25
>KOG1987|consensus
Probab=96.25 E-value=0.0016 Score=52.77 Aligned_cols=91 Identities=22% Similarity=0.095 Sum_probs=73.0
Q ss_pred CeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHHHHH---HHHHHhhhcCccc
Q psy11355 78 GRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLS---SLLSMADALHIRG 153 (177)
Q Consensus 78 ~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~~v~---~ll~~A~~l~i~~ 153 (177)
++.+.+|+.+++++++.|+.++. ...+.....+.+.+.++..++.+..|.|+..-.-..+.+. .++.+|..++.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 56699999999999999999987 4333344455777889999999999999876555555554 7888999999999
Q ss_pred HHHHHhhhhhhhccc
Q psy11355 154 LADFTGMVSVIIVTS 168 (177)
Q Consensus 154 L~~~c~~~~~~~~~~ 168 (177)
++..|...+...+..
T Consensus 189 lk~~~~~~l~~~~~~ 203 (297)
T KOG1987|consen 189 LKLACMPVLLSLIET 203 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999997766543
No 26
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.043 Score=39.16 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=69.0
Q ss_pred cEEEEe-CCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHHHHHHHHHcCCCC-----------------
Q psy11355 71 DVTLSA-GGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMYNGEV----------------- 132 (177)
Q Consensus 71 Dv~l~v-~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i----------------- 132 (177)
-+.+.. +|..|.+.+.+ |-+|-..+.++.....++- .|..+++...+|..+++|+-..+-
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~~~n~-p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDSTACNY-PIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhccccccCC-CCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 345544 67888887765 8889889998875444443 366778999999999999953221
Q ss_pred --------CCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhc
Q psy11355 133 --------NIYQQQLSSLLSMADALHIRGLADFTGMVSVIIV 166 (177)
Q Consensus 133 --------~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~ 166 (177)
.++.+.+.++.-+|++|.++.|.+.|....+..+
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemi 122 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI 122 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 1233456788999999999999999988765543
No 27
>KOG1665|consensus
Probab=95.13 E-value=0.072 Score=41.72 Aligned_cols=88 Identities=14% Similarity=0.211 Sum_probs=65.3
Q ss_pred EEEEeCCeEEEeehhhhhcc--ChHHHHhhc--c--ccCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCC-CHHHHHHHHH
Q psy11355 72 VTLSAGGRHMKAHKVVLSAC--SHYFKQLFK--E--IDGYQHPVIILPGVEFNDLYALVTFMYNGEVNI-YQQQLSSLLS 144 (177)
Q Consensus 72 v~l~v~~~~~~aHr~vLaa~--S~~F~~lf~--~--~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~-~~~~v~~ll~ 144 (177)
|.+.++|+.|.--+--|.-+ -..+..||. + -++.+...+-+ |=++.-|+.+|.|+-.|.+.. +.-++..+++
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLe 89 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLE 89 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCceeecCCccHHHHHH
Confidence 56677888887665555444 346677887 2 12333344444 568999999999999999765 5678999999
Q ss_pred HhhhcCcccHHHHHhh
Q psy11355 145 MADALHIRGLADFTGM 160 (177)
Q Consensus 145 ~A~~l~i~~L~~~c~~ 160 (177)
.|++|++-.|++..++
T Consensus 90 eArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 90 EARFFQILSLKDHLED 105 (302)
T ss_pred HhhHHhhHhHHhHHhh
Confidence 9999999999988876
No 28
>KOG2715|consensus
Probab=94.46 E-value=0.14 Score=38.25 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=67.8
Q ss_pred EEEEeCCeEEEeehhhhhccChHHHHhhc-cccC----CCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Q psy11355 72 VTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDG----YQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMA 146 (177)
Q Consensus 72 v~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e----~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~~v~~ll~~A 146 (177)
|.+.|||..|.--|.-|..-+..|...|. .... ....--.+-|=+|.-|..+|+|+-.|++.++.-.-..++.-|
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~EA 102 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLEEA 102 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccchhh
Confidence 45567999999999999998877765554 1111 111112233568899999999999999998885556699999
Q ss_pred hhcCcccHHHHHhhhhh
Q psy11355 147 DALHIRGLADFTGMVSV 163 (177)
Q Consensus 147 ~~l~i~~L~~~c~~~~~ 163 (177)
++|+++.|.++..+...
T Consensus 103 efyn~~~li~likd~i~ 119 (210)
T KOG2715|consen 103 EFYNDPSLIQLIKDRIQ 119 (210)
T ss_pred hccCChHHHHHHHHHHH
Confidence 99999999887766543
No 29
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=91.60 E-value=0.23 Score=32.26 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhcc
Q psy11355 133 NIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVT 167 (177)
Q Consensus 133 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~ 167 (177)
.++.+.+.+|+.+|++|+|++|.++|....+..+.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 34677899999999999999999999998877765
No 30
>KOG2723|consensus
Probab=79.29 E-value=11 Score=29.60 Aligned_cols=55 Identities=5% Similarity=0.027 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHhhhcCcccHHHHHhhhhhhhcccc
Q psy11355 115 VEFNDLYALVTFMYNGEVNIYQ--QQLSSLLSMADALHIRGLADFTGMVSVIIVTSG 169 (177)
Q Consensus 115 ~~~~~~~~~L~fiYtg~i~~~~--~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~~ 169 (177)
=+-..|+.+++|+=+-...+++ .++..+.+-|++|+++.+..++.+.-.+.....
T Consensus 57 RDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~~~~~~~~~~ 113 (221)
T KOG2723|consen 57 RDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLNSGQIDTERR 113 (221)
T ss_pred CCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhcccccccccc
Confidence 3567899999999996666665 678999999999999998887777665554433
No 31
>KOG3840|consensus
Probab=65.72 E-value=16 Score=30.29 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=55.4
Q ss_pred cEEEEeCCeEEEeehhhhhccCh-HHHHhhc-c--c-cCCCCCEEEeC-CCCHHHHHHHHHHHcCCCCCC-CHHHHHHHH
Q psy11355 71 DVTLSAGGRHMKAHKVVLSACSH-YFKQLFK-E--I-DGYQHPVIILP-GVEFNDLYALVTFMYNGEVNI-YQQQLSSLL 143 (177)
Q Consensus 71 Dv~l~v~~~~~~aHr~vLaa~S~-~F~~lf~-~--~-~e~~~~~i~l~-~~~~~~~~~~L~fiYtg~i~~-~~~~v~~ll 143 (177)
-++..+++..|-+-+.+|.+.-. -.-.||. + + .....++...- +++..+|+.+|+|--+|.+.- +.-.+.+|-
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 46677788888888888765421 2233443 1 1 11223455544 699999999999999998754 335677888
Q ss_pred HHhhhcCccc
Q psy11355 144 SMADALHIRG 153 (177)
Q Consensus 144 ~~A~~l~i~~ 153 (177)
+++++|.++-
T Consensus 177 EACDYLlipF 186 (438)
T KOG3840|consen 177 EACDYLLVPF 186 (438)
T ss_pred hhcceEEeec
Confidence 8888887653
No 32
>KOG1778|consensus
Probab=56.51 E-value=2.2 Score=35.31 Aligned_cols=56 Identities=21% Similarity=0.308 Sum_probs=40.4
Q ss_pred EeCCeEEEeehhhhhccChHHHHhhccc-cCCCCCEEEeCCCCHHHHHHHHHHHcCC
Q psy11355 75 SAGGRHMKAHKVVLSACSHYFKQLFKEI-DGYQHPVIILPGVEFNDLYALVTFMYNG 130 (177)
Q Consensus 75 ~v~~~~~~aHr~vLaa~S~~F~~lf~~~-~e~~~~~i~l~~~~~~~~~~~L~fiYtg 130 (177)
..+...+++|+.+|+..|+.|.....+. .......+.+-.++...+..+.+++|.+
T Consensus 32 ~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~ 88 (319)
T KOG1778|consen 32 TDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS 88 (319)
T ss_pred hhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc
Confidence 3355679999999999999998776522 1122344556667888888888888876
No 33
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=47.89 E-value=39 Score=28.49 Aligned_cols=133 Identities=16% Similarity=0.226 Sum_probs=69.6
Q ss_pred CchHHHHHHHHHhhcccCCCCCccccccCcCCCCCCCCCCCcceeeccC-chHHHHHHHHHHHhcCCCcccEEEEeCCeE
Q psy11355 2 FNPLLLFIRQLVHHHCLTSSFTSLFTVRSSQSTMDPQLDGSQQFCLRWH-NYQTSLLATLPQLLDGEDLTDVTLSAGGRH 80 (177)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~ 80 (177)
|-|++.+|++.|....+.+.-+=........ ..|..+.. .-...+.+.+..+-........++.+.|+.
T Consensus 182 Flp~I~~l~~~~~vv~ld~~~DyR~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~v~gR~ 251 (362)
T PF03969_consen 182 FLPFIDLLKRRCDVVELDGGVDYRRRGAPPA----------PVYFYPLDEEADAALERLFQRLTGGEPEEPRTLEVGGRE 251 (362)
T ss_pred HHHHHHHHHhceEEEEecCCCchhhhccccc----------ccccCcchHHHHHHHHHHHHHhccccCCCCceeEEeeeE
Confidence 5699999999999999888644444322211 11111111 112333344444444444556778888888
Q ss_pred EEeehhhhhccChHHHHhhccccC--------CCCCEEEeCCCC---------HHHHHHHHHHHcCCCCCC---CHHHHH
Q psy11355 81 MKAHKVVLSACSHYFKQLFKEIDG--------YQHPVIILPGVE---------FNDLYALVTFMYNGEVNI---YQQQLS 140 (177)
Q Consensus 81 ~~aHr~vLaa~S~~F~~lf~~~~e--------~~~~~i~l~~~~---------~~~~~~~L~fiYtg~i~~---~~~~v~ 140 (177)
+.+-+.-=...-=-|..++..... ..-..|.+.+|+ ..=|-.++|-+|..++.+ ......
T Consensus 252 i~v~~~~~~va~F~F~eLC~~plg~aDYlaLA~~F~ti~I~~VP~l~~~~~n~arRFI~LID~LYd~~v~L~~sa~~~~~ 331 (362)
T PF03969_consen 252 IPVPRACGGVAWFDFDELCERPLGAADYLALAERFHTIFISDVPVLSESDRNEARRFITLIDVLYDRKVKLIISAAAPPD 331 (362)
T ss_pred EeeecccCCEEEecHHHhhccCCCHHHHHHHHHhCCEEEEcCCCCcccCChhHHHHHHHHHHHHhhCCCcEEEEcCCCHH
Confidence 876443322222234555432111 111356666543 234777888889877643 233444
Q ss_pred HHHH
Q psy11355 141 SLLS 144 (177)
Q Consensus 141 ~ll~ 144 (177)
+++.
T Consensus 332 ~L~~ 335 (362)
T PF03969_consen 332 ELFQ 335 (362)
T ss_pred HHHh
Confidence 4443
No 34
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=33.35 E-value=1.6e+02 Score=20.01 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=36.2
Q ss_pred EEEEeCC--eEEEeehhhhhccChHHHHhhc-c---ccCCCCCEEEeCCCCHHHHHHHHHHH
Q psy11355 72 VTLSAGG--RHMKAHKVVLSACSHYFKQLFK-E---IDGYQHPVIILPGVEFNDLYALVTFM 127 (177)
Q Consensus 72 v~l~v~~--~~~~aHr~vLaa~S~~F~~lf~-~---~~e~~~~~i~l~~~~~~~~~~~L~fi 127 (177)
+.+.||+ +.|-+....|. .+.|++++. . +.-...+.|.++ .+...|+.++..+
T Consensus 41 ~~VyVG~~~~Rfvvp~~~L~--hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 41 FAVYVGEERRRFVVPVSYLN--HPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred EEEEeCccceEEEechHHcC--chhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 4566654 56777776654 589999998 1 122234668887 7888999988765
No 35
>KOG3713|consensus
Probab=32.26 E-value=1.3e+02 Score=26.42 Aligned_cols=82 Identities=12% Similarity=0.027 Sum_probs=47.4
Q ss_pred cEEEEeCCeEEEeehhhhhccChHHHHhhcc------------ccCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHHH
Q psy11355 71 DVTLSAGGRHMKAHKVVLSACSHYFKQLFKE------------IDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQ 138 (177)
Q Consensus 71 Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~~------------~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~~ 138 (177)
-+.+.|||..+..-+..|...-.---..+.. .-....++..++ =+|..|..+++|.+||++....+-
T Consensus 32 ~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFD-R~P~~F~~Vl~fYrtGkLH~p~~v 110 (477)
T KOG3713|consen 32 RVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFD-RHPGAFAYVLNFYRTGKLHVPADV 110 (477)
T ss_pred EEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeec-cChHHHHHHHHHHhcCeecccccc
Confidence 4667788887776666655411100011110 001123455553 489999999999999999776543
Q ss_pred H-HHHHHHhhhcCccc
Q psy11355 139 L-SSLLSMADALHIRG 153 (177)
Q Consensus 139 v-~~ll~~A~~l~i~~ 153 (177)
. ..+.+=-++++++.
T Consensus 111 C~~~F~eEL~yWgI~~ 126 (477)
T KOG3713|consen 111 CPLSFEEELDYWGIDE 126 (477)
T ss_pred chHHHHHHHHHhCCCh
Confidence 2 33444456677765
No 36
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=31.76 E-value=37 Score=18.61 Aligned_cols=21 Identities=19% Similarity=0.545 Sum_probs=12.6
Q ss_pred HcCCCC----CCCHHHHHHHHHHhh
Q psy11355 127 MYNGEV----NIYQQQLSSLLSMAD 147 (177)
Q Consensus 127 iYtg~i----~~~~~~v~~ll~~A~ 147 (177)
+|.|++ .++++.+.+++.+|.
T Consensus 11 fY~G~V~Vfd~v~~~Ka~~im~lA~ 35 (36)
T PF06200_consen 11 FYGGQVCVFDDVPPDKAQEIMLLAS 35 (36)
T ss_pred EECCEEEEeCCCCHHHHHHHHHHhc
Confidence 466664 255666666666664
No 37
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=27.01 E-value=2.3e+02 Score=19.95 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=42.3
Q ss_pred CCeEEEeehhhhhccChHHHHh-hccccCCCCCEEEeC-C--CCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhhcCc
Q psy11355 77 GGRHMKAHKVVLSACSHYFKQL-FKEIDGYQHPVIILP-G--VEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHI 151 (177)
Q Consensus 77 ~~~~~~aHr~vLaa~S~~F~~l-f~~~~e~~~~~i~l~-~--~~~~~~~~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i 151 (177)
++..+.+|-.+++++||.+... |. ..=... .+..| | --.+.....++++|.|.- +..-..+++..+-|.+-+
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~-IpY~~~-~ii~PFDFNglEe~I~~~l~~mY~~s~-~~efk~EDmve~IDIlmm 95 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFI-IPYTHE-GIIPPFDFNGLEEGIKNTLKIMYKDSK-IEEFKQEDMVEAIDILMM 95 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEE-EeccCC-CeECCcccCcHHHHHHHHHHHHhCCCC-cccccHHHHHhhhheeee
Confidence 5678999999999999988543 21 000111 12222 2 246889999999998743 222223344444444433
No 38
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=26.49 E-value=2e+02 Score=26.56 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHhcCCCcccEEEEeCC------eEEEeehhhhhccChHHHHhhc--cccCCCCCEEEeCCCCHHHHHHH
Q psy11355 52 YQTSLLATLPQLLDGEDLTDVTLSAGG------RHMKAHKVVLSACSHYFKQLFK--EIDGYQHPVIILPGVEFNDLYAL 123 (177)
Q Consensus 52 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~------~~~~aHr~vLaa~S~~F~~lf~--~~~e~~~~~i~l~~~~~~~~~~~ 123 (177)
.+..+.+.+.+++.....|++++.+.| ..+...--.+.+...|++++|. ++.. .
T Consensus 390 ~~~~~~~~~~~~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~-----------------~- 451 (682)
T PTZ00348 390 VAEGMIDATKDFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPS-----------------E- 451 (682)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCC-----------------C-
Confidence 345666778899999999999998754 2333444566777799999987 3322 1
Q ss_pred HHHHcCCCCCCC-H-HHHHHHHHHhhhcCcccHHHHH
Q psy11355 124 VTFMYNGEVNIY-Q-QQLSSLLSMADALHIRGLADFT 158 (177)
Q Consensus 124 L~fiYtg~i~~~-~-~~v~~ll~~A~~l~i~~L~~~c 158 (177)
.+|++....... + +-...++.+|....+.++++.|
T Consensus 452 v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~r~~ 488 (682)
T PTZ00348 452 VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVEELY 488 (682)
T ss_pred cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHHHHh
Confidence 345555444444 2 5667778888888888877766
No 39
>KOG3342|consensus
Probab=26.43 E-value=36 Score=25.23 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=13.7
Q ss_pred ccEE-EEeCCeEEE-eehhh
Q psy11355 70 TDVT-LSAGGRHMK-AHKVV 87 (177)
Q Consensus 70 ~Dv~-l~v~~~~~~-aHr~v 87 (177)
-|++ +.++|+++| +||++
T Consensus 81 GdivVf~vegR~IPiVHRvi 100 (180)
T KOG3342|consen 81 GDIVVFKVEGREIPIVHRVI 100 (180)
T ss_pred ccEEEEEECCccCchhHHHH
Confidence 3554 588999998 68877
No 40
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=22.44 E-value=77 Score=20.54 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=18.6
Q ss_pred HHHHHHhhhcCcccHHHHHhhhhh
Q psy11355 140 SSLLSMADALHIRGLADFTGMVSV 163 (177)
Q Consensus 140 ~~ll~~A~~l~i~~L~~~c~~~~~ 163 (177)
..++..|..++++.|.+.|.+...
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~ 25 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIA 25 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHH
Confidence 357889999999999988877643
No 41
>KOG4682|consensus
Probab=22.22 E-value=66 Score=27.78 Aligned_cols=31 Identities=3% Similarity=-0.091 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHhhhcCcccHHHHHhhhhh
Q psy11355 133 NIYQQQLSSLLSMADALHIRGLADFTGMVSV 163 (177)
Q Consensus 133 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~ 163 (177)
.+++.++...+++|.+||++.+++-|.+-+.
T Consensus 169 ~lspkta~~yYea~ckYgle~vk~kc~ewl~ 199 (488)
T KOG4682|consen 169 TLSPKTACGYYEAACKYGLESVKKKCLEWLL 199 (488)
T ss_pred hcChhhhhHhhhhhhhhhhHHHHHHHHHHHH
Confidence 5788999999999999999999999988754
No 42
>PHA03098 kelch-like protein; Provisional
Probab=21.29 E-value=97 Score=27.06 Aligned_cols=30 Identities=7% Similarity=-0.141 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHhhhcCcccHHHHHhhhh
Q psy11355 133 NIYQQQLSSLLSMADALHIRGLADFTGMVS 162 (177)
Q Consensus 133 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~ 162 (177)
.++.+|...++.+|..++++.|.+.|.+..
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i 133 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKKLYSAAYNYI 133 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 467889999999999999999999986653
No 43
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=20.08 E-value=40 Score=22.07 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=8.4
Q ss_pred HHHHHHHHHHcCCC
Q psy11355 118 NDLYALVTFMYNGE 131 (177)
Q Consensus 118 ~~~~~~L~fiYtg~ 131 (177)
..+..=+|||||..
T Consensus 65 RtL~AHlDYIYTQ~ 78 (81)
T PF06404_consen 65 RTLAAHLDYIYTQH 78 (81)
T ss_pred HHHHHHhhheeccC
Confidence 34445577888753
Done!