Query psy11355
Match_columns 177
No_of_seqs 195 out of 1434
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 16:16:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2if5_A Zinc finger and BTB dom 100.0 1.1E-29 3.8E-34 179.2 12.2 117 46-162 2-119 (120)
2 2ppi_A Gigaxonin; BTB domain, 100.0 1.7E-29 6E-34 184.0 12.3 122 41-162 19-143 (144)
3 1r29_A B-cell lymphoma 6 prote 100.0 3E-29 1E-33 178.7 12.3 120 43-163 3-124 (127)
4 2z8h_A Transcription regulator 100.0 5.1E-29 1.8E-33 180.1 12.0 128 41-170 8-137 (138)
5 3b84_A Zinc finger and BTB dom 100.0 2.6E-29 9E-34 177.3 8.7 115 47-164 2-116 (119)
6 1buo_A POZ domain, protein (pr 100.0 1.2E-28 4.2E-33 174.3 11.7 118 44-165 3-120 (121)
7 3ohu_A Transcription regulator 100.0 3.7E-29 1.3E-33 177.8 8.7 119 41-161 4-124 (125)
8 3ga1_A Nucleus accumbens-assoc 100.0 4E-29 1.4E-33 178.6 8.3 125 39-166 3-128 (129)
9 2ihc_A Transcription regulator 100.0 1.1E-28 3.8E-33 175.3 7.0 119 43-163 3-123 (124)
10 2yy9_A Zinc finger and BTB dom 100.0 3.3E-28 1.1E-32 175.4 9.5 116 49-167 5-120 (135)
11 2vpk_A Myoneurin; transcriptio 99.9 5.9E-28 2E-32 169.4 9.8 111 50-163 3-115 (116)
12 2q81_A MIZ-1 protein; BTB/POZ 99.9 2.1E-28 7.3E-33 172.6 7.2 114 46-163 4-117 (119)
13 3fkc_A Transcriptional regulat 99.9 9.7E-27 3.3E-31 163.6 11.7 112 41-156 3-115 (116)
14 3hve_A Gigaxonin; ubiquitin, c 99.9 6.9E-27 2.3E-31 184.6 10.1 128 45-172 7-137 (256)
15 3htm_A Speckle-type POZ protei 99.9 9.1E-27 3.1E-31 173.2 8.9 119 53-171 18-137 (172)
16 2vkp_A BTB/POZ domain-containi 99.9 1.9E-26 6.4E-31 159.8 9.2 101 63-164 2-107 (109)
17 4eoz_A Speckle-type POZ protei 99.9 5.3E-27 1.8E-31 170.0 6.2 120 53-172 9-129 (145)
18 3i3n_A Kelch-like protein 11; 99.9 1.4E-26 4.8E-31 185.1 7.7 129 44-172 7-145 (279)
19 3m5b_A Zinc finger and BTB dom 99.9 8E-26 2.7E-30 159.7 9.2 104 50-163 13-116 (119)
20 3hqi_A Speckle-type POZ protei 99.9 9.2E-24 3.2E-28 171.0 11.0 119 53-171 158-277 (312)
21 2ast_A S-phase kinase-associat 99.6 6.2E-15 2.1E-19 108.6 9.2 96 72-168 3-128 (159)
22 4ajy_C Transcription elongatio 99.4 4.2E-13 1.4E-17 91.0 9.0 79 72-151 4-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.4 2.6E-12 8.9E-17 92.7 8.7 93 72-168 4-123 (141)
24 2p1m_A SKP1-like protein 1A; F 99.2 4.6E-12 1.6E-16 93.3 1.6 93 72-167 6-126 (160)
25 3v7d_A Suppressor of kinetocho 98.9 1.4E-08 4.8E-13 75.2 9.9 96 71-167 8-134 (169)
26 1hv2_A Elongin C, ELC1; protei 98.8 3E-08 1E-12 67.1 8.5 80 71-151 5-99 (99)
27 2fnj_C Transcription elongatio 98.8 1.8E-08 6.2E-13 67.8 6.5 79 72-151 3-96 (96)
28 3drz_A BTB/POZ domain-containi 98.6 4.7E-07 1.6E-11 62.0 9.3 92 71-163 7-105 (107)
29 1vcb_B Protein (elongin C); tu 98.4 9.9E-07 3.4E-11 60.9 7.0 80 71-151 18-112 (112)
30 3drx_A BTB/POZ domain-containi 97.7 7.5E-05 2.6E-09 56.4 5.9 91 72-163 14-111 (202)
31 1s1g_A Potassium voltage-gated 97.2 0.0013 4.4E-08 45.9 7.2 92 71-163 14-110 (124)
32 2nz0_B Potassium voltage-gated 96.8 0.0026 8.8E-08 45.3 5.6 83 71-154 36-121 (140)
33 1nn7_A Potassium channel KV4.2 96.7 0.0015 5E-08 44.2 4.0 90 72-162 2-96 (105)
34 3kvt_A Potassium channel prote 96.7 0.0019 6.5E-08 44.4 4.6 89 72-161 7-101 (115)
35 1t1d_A Protein (potassium chan 96.6 0.0057 1.9E-07 40.9 6.1 88 72-160 3-96 (100)
36 2r9r_B Paddle chimera voltage 90.8 0.61 2.1E-05 39.8 7.0 84 71-155 53-141 (514)
37 2eqx_A Kelch repeat and BTB do 77.3 2 6.9E-05 28.2 3.2 33 130-162 4-36 (105)
38 3htm_A Speckle-type POZ protei 51.5 9.8 0.00033 26.5 2.7 31 133-163 131-161 (172)
39 3hqi_A Speckle-type POZ protei 40.3 17 0.00058 28.1 2.7 32 133-164 271-302 (312)
40 2rbg_A Putative uncharacterize 26.8 26 0.0009 23.6 1.4 69 93-161 19-97 (126)
41 3i3n_A Kelch-like protein 11; 24.7 44 0.0015 25.3 2.6 30 133-162 138-167 (279)
42 3hve_A Gigaxonin; ubiquitin, c 24.5 33 0.0011 25.6 1.9 30 133-162 130-159 (256)
43 4fqn_A Malcavernin; helical do 23.1 1.2E+02 0.004 19.7 3.9 63 115-177 10-73 (98)
No 1
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.96 E-value=1.1e-29 Score=179.16 Aligned_cols=117 Identities=26% Similarity=0.388 Sum_probs=108.0
Q ss_pred eeccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCCCCHHHHHHHH
Q psy11355 46 CLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLYALV 124 (177)
Q Consensus 46 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~~~~~~~~~~L 124 (177)
..+|+.|++.+.+.++++++++.+|||++.++|+.|+|||.||+++|+||+++|. ++.++....|.++++++++|+.++
T Consensus 2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll 81 (120)
T 2if5_A 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALM 81 (120)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHH
T ss_pred CcCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999 777888889999999999999999
Q ss_pred HHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhh
Q psy11355 125 TFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVS 162 (177)
Q Consensus 125 ~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~ 162 (177)
+|+|||++.++.+++.+++.+|++|++++|++.|++.+
T Consensus 82 ~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 82 DFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999875
No 2
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=184.02 Aligned_cols=122 Identities=16% Similarity=0.272 Sum_probs=109.6
Q ss_pred CCcceeeccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccC--CCCCEEEeCCCCH
Q psy11355 41 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDG--YQHPVIILPGVEF 117 (177)
Q Consensus 41 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e--~~~~~i~l~~~~~ 117 (177)
..+.+.+.++.|+..+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||++||. ++.+ +....|.++++++
T Consensus 19 ~~~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~ 98 (144)
T 2ppi_A 19 YFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISV 98 (144)
T ss_dssp CCCCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCH
T ss_pred eeeeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCH
Confidence 344567788899999999999999999999999999999999999999999999999998 5443 5678999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhh
Q psy11355 118 NDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVS 162 (177)
Q Consensus 118 ~~~~~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~ 162 (177)
++|+.+|+|+|||++.++.+++.+++.+|++|++++|++.|++.+
T Consensus 99 ~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 99 MVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp HHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999875
No 3
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.96 E-value=3e-29 Score=178.71 Aligned_cols=120 Identities=24% Similarity=0.405 Sum_probs=111.7
Q ss_pred cceeeccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEe-CCCCHHHH
Q psy11355 43 QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIIL-PGVEFNDL 120 (177)
Q Consensus 43 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l-~~~~~~~~ 120 (177)
....++++.|++.+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||++||. ++.+ ....|.+ +++++++|
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f 81 (127)
T 1r29_A 3 ADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGF 81 (127)
T ss_dssp --CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHH
T ss_pred CCccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHH
Confidence 3456678899999999999999999999999999999999999999999999999999 6666 6789999 89999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhh
Q psy11355 121 YALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSV 163 (177)
Q Consensus 121 ~~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~ 163 (177)
+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++.+.
T Consensus 82 ~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~ 124 (127)
T 1r29_A 82 NILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 124 (127)
T ss_dssp HHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764
No 4
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.96 E-value=5.1e-29 Score=180.10 Aligned_cols=128 Identities=21% Similarity=0.342 Sum_probs=116.6
Q ss_pred CCcceeeccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeC-CCCHH
Q psy11355 41 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILP-GVEFN 118 (177)
Q Consensus 41 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~-~~~~~ 118 (177)
+...+.+.++.|+..+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||++||. ++.+ ...|.++ +++++
T Consensus 8 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~v~~~ 85 (138)
T 2z8h_A 8 ESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDA--ELTVTLPEEVTVK 85 (138)
T ss_dssp TTCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCT--TEEEECCTTSCHH
T ss_pred CCCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCC--CceEEeCCCCCHH
Confidence 446777888999999999999999999999999999999999999999999999999998 4433 3578995 89999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhccccc
Q psy11355 119 DLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVTSGH 170 (177)
Q Consensus 119 ~~~~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~~~ 170 (177)
+|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++.+..-++..+
T Consensus 86 ~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn 137 (138)
T 2z8h_A 86 GFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDST 137 (138)
T ss_dssp HHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred HHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999887766543
No 5
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.96 E-value=2.6e-29 Score=177.32 Aligned_cols=115 Identities=23% Similarity=0.367 Sum_probs=106.3
Q ss_pred eccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHHHHHHHH
Q psy11355 47 LRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTF 126 (177)
Q Consensus 47 ~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~~~~L~f 126 (177)
++|++|+..+++.++++++++.+|||++.++|++|+|||.||+++|+||++||.+.. ...|.++++++++|+.+|+|
T Consensus 2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~---~~~i~l~~~~~~~f~~ll~~ 78 (119)
T 3b84_A 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS---GGSVVLPAGFAEIFGLLLDF 78 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT---CCCEEECGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC---CCeEEeCCCCHHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999999997321 56899999999999999999
Q ss_pred HcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhh
Q psy11355 127 MYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSVI 164 (177)
Q Consensus 127 iYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~ 164 (177)
+|||++.++.+++.+++.+|++|++++|++.|++.+..
T Consensus 79 iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 79 FYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987653
No 6
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.96 E-value=1.2e-28 Score=174.29 Aligned_cols=118 Identities=22% Similarity=0.272 Sum_probs=110.2
Q ss_pred ceeeccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHHHHH
Q psy11355 44 QFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYAL 123 (177)
Q Consensus 44 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~~~~ 123 (177)
.+.+.+++|++.+.+.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+ +...|.++++++++|+.+
T Consensus 3 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~----~~~~i~l~~~~~~~f~~l 78 (121)
T 1buo_A 3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR----NSQHYTLDFLSPKTFQQI 78 (121)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTS----CCSEEEECSSCHHHHHHH
T ss_pred ceeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcC----CCcEEEeCCCCHHHHHHH
Confidence 3456788899999999999999999999999999999999999999999999999973 246899999999999999
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhh
Q psy11355 124 VTFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSVII 165 (177)
Q Consensus 124 L~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~ 165 (177)
++|+|||++.++.+++.+++.+|++|++++|++.|++.+...
T Consensus 79 l~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 79 LEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp HHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988754
No 7
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.96 E-value=3.7e-29 Score=177.78 Aligned_cols=119 Identities=26% Similarity=0.386 Sum_probs=110.2
Q ss_pred CCcceeeccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCC-CCHH
Q psy11355 41 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPG-VEFN 118 (177)
Q Consensus 41 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~-~~~~ 118 (177)
....+.+.+++|+..+++.++++++++.+|||+|.++|+.|+|||.||+++|+||+++|. ++.+ ...|.+++ ++++
T Consensus 4 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~ 81 (125)
T 3ohu_A 4 GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTAR 81 (125)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHH
T ss_pred CCcceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHH
Confidence 344567788899999999999999999999999999999999999999999999999998 4433 67899998 9999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhh
Q psy11355 119 DLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMV 161 (177)
Q Consensus 119 ~~~~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~ 161 (177)
+|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++.
T Consensus 82 ~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 82 GFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp HHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred HHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999875
No 8
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.96 E-value=4e-29 Score=178.64 Aligned_cols=125 Identities=25% Similarity=0.394 Sum_probs=107.0
Q ss_pred CCCCcceeeccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeC-CCCH
Q psy11355 39 LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILP-GVEF 117 (177)
Q Consensus 39 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~-~~~~ 117 (177)
.+..+.+.+++++|...+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||+++|.+. ....|.++ ++++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~---~~~~i~l~~~~~~ 79 (129)
T 3ga1_A 3 LGSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---RSAVVELPAAVQP 79 (129)
T ss_dssp ----CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC---CCSEEECCTTCCH
T ss_pred CCCCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC---CCCEEEECCCCCH
Confidence 3455678889999999999999999999999999999999999999999999999999999842 56789997 8999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhc
Q psy11355 118 NDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIV 166 (177)
Q Consensus 118 ~~~~~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~ 166 (177)
++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++.+....
T Consensus 80 ~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~~ 128 (129)
T 3ga1_A 80 QSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVS 128 (129)
T ss_dssp HHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC---------
T ss_pred HHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999876543
No 9
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=175.30 Aligned_cols=119 Identities=24% Similarity=0.386 Sum_probs=108.3
Q ss_pred cceeeccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeC-CCCHHHH
Q psy11355 43 QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILP-GVEFNDL 120 (177)
Q Consensus 43 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~-~~~~~~~ 120 (177)
..+.+.++.|++.+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||++||. ++.+ ...|.++ ++++++|
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e--~~~i~l~~~v~~~~f 80 (124)
T 2ihc_A 3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADG--ELNITLPEEVTVKGF 80 (124)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC-----CEEEECCTTSCHHHH
T ss_pred ceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCC--CceEeecCCcCHHHH
Confidence 4577888999999999999999999999999999999999999999999999999998 4433 3578895 8999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhh
Q psy11355 121 YALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSV 163 (177)
Q Consensus 121 ~~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~ 163 (177)
+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++.+.
T Consensus 81 ~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 81 EPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998754
No 10
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.95 E-value=3.3e-28 Score=175.35 Aligned_cols=116 Identities=22% Similarity=0.339 Sum_probs=103.1
Q ss_pred cCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHHHHHHHHHc
Q psy11355 49 WHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMY 128 (177)
Q Consensus 49 ~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~~~~L~fiY 128 (177)
+++|...+++.++++++++.+|||+|.++|+.|+|||.||+++|+||++||.+.. ...|.++++++++|+.+|+|+|
T Consensus 5 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~---~~~i~l~~~~~~~f~~lL~fiY 81 (135)
T 2yy9_A 5 SSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT---GGSVVLPAGFAEIFGLLLDFFY 81 (135)
T ss_dssp --CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC-------CCEEECGGGHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC---CCeEEeCCCCHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999998311 5679999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhcc
Q psy11355 129 NGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVT 167 (177)
Q Consensus 129 tg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~ 167 (177)
||++.++.+++.+++.+|++|+++.|++.|++.+..-+.
T Consensus 82 tg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 82 TGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp HSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC----
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999998766543
No 11
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.95 E-value=5.9e-28 Score=169.40 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=103.6
Q ss_pred CchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeC--CCCHHHHHHHHHHH
Q psy11355 50 HNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILP--GVEFNDLYALVTFM 127 (177)
Q Consensus 50 ~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~--~~~~~~~~~~L~fi 127 (177)
++|+..+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||++||.+. ....|.++ ++++++|+.+|+|+
T Consensus 3 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~---~~~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST---SENNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC---CCSCEECCTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC---CCCeEEeecCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999742 35678888 99999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhh
Q psy11355 128 YNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSV 163 (177)
Q Consensus 128 Ytg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~ 163 (177)
|||++.++.+++.+++.+|++|+++.|++.|++.+.
T Consensus 80 Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 80 YTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999998764
No 12
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.95 E-value=2.1e-28 Score=172.64 Aligned_cols=114 Identities=28% Similarity=0.414 Sum_probs=105.3
Q ss_pred eeccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHHHHHHH
Q psy11355 46 CLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVT 125 (177)
Q Consensus 46 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~~~~L~ 125 (177)
.++++.|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||++||.+ ....|.++++++++|+.+|+
T Consensus 4 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~----~~~~i~l~~~~~~~f~~ll~ 79 (119)
T 2q81_A 4 GSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD----QKDVVHLDISNAAGLGQVLE 79 (119)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH----CCSGGGGGGCCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC----CCCEEEeCCCCHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999974 23467888999999999999
Q ss_pred HHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhh
Q psy11355 126 FMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSV 163 (177)
Q Consensus 126 fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~ 163 (177)
|+|||++.++.+++.+++.+|++|++++|++.|++.+.
T Consensus 80 ~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 80 FMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998764
No 13
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.94 E-value=9.7e-27 Score=163.57 Aligned_cols=112 Identities=25% Similarity=0.365 Sum_probs=103.0
Q ss_pred CCcceeeccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHH
Q psy11355 41 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDL 120 (177)
Q Consensus 41 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~ 120 (177)
......+.+++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+. ...|.++++++++|
T Consensus 3 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~----~~~i~l~~~~~~~f 78 (116)
T 3fkc_A 3 SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA----GQVVELSFIRAEIF 78 (116)
T ss_dssp -CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSCHHHH
T ss_pred cCceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCCCHHHH
Confidence 34456667888999999999999999999999999999999999999999999999999732 56899999999999
Q ss_pred HHHHHHHcCCCC-CCCHHHHHHHHHHhhhcCcccHHH
Q psy11355 121 YALVTFMYNGEV-NIYQQQLSSLLSMADALHIRGLAD 156 (177)
Q Consensus 121 ~~~L~fiYtg~i-~~~~~~v~~ll~~A~~l~i~~L~~ 156 (177)
+.+++|+|||++ .++.+++.+++.+|++|++++|++
T Consensus 79 ~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 79 AEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred HHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence 999999999999 799999999999999999999875
No 14
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.94 E-value=6.9e-27 Score=184.65 Aligned_cols=128 Identities=15% Similarity=0.262 Sum_probs=108.7
Q ss_pred eeeccCchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-ccc--CCCCCEEEeCCCCHHHHH
Q psy11355 45 FCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EID--GYQHPVIILPGVEFNDLY 121 (177)
Q Consensus 45 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~--e~~~~~i~l~~~~~~~~~ 121 (177)
..+.++.|+..+++.++++++++.+|||+|.++|+.|+|||.||+++|+||++||. ++. ++....|.++++++++|+
T Consensus 7 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~ 86 (256)
T 3hve_A 7 SAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMR 86 (256)
T ss_dssp ---CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHH
T ss_pred CccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHH
Confidence 44567788999999999999999999999999999999999999999999999998 544 567789999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhcccccee
Q psy11355 122 ALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVTSGHVL 172 (177)
Q Consensus 122 ~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~~~~~ 172 (177)
.+++|+|||++.++.+++.+++.+|++|+++.|++.|++.+..-++..+++
T Consensus 87 ~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~ 137 (256)
T 3hve_A 87 EILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCI 137 (256)
T ss_dssp HHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTH
T ss_pred HHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHH
Confidence 999999999999999999999999999999999999999998877766554
No 15
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.94 E-value=9.1e-27 Score=173.24 Aligned_cols=119 Identities=22% Similarity=0.339 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCCCCHHHHHHHHHHHcCCC
Q psy11355 53 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLYALVTFMYNGE 131 (177)
Q Consensus 53 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~ 131 (177)
++.+.+.+.++++++.+|||+|.++|+.|+|||.||+++|+||+++|. ++.+.....|.++++++++|+.+|+|+|+|+
T Consensus 18 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~ 97 (172)
T 3htm_A 18 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK 97 (172)
T ss_dssp CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCC
Confidence 467899999999999999999999999999999999999999999999 7778888899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhccccce
Q psy11355 132 VNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVTSGHV 171 (177)
Q Consensus 132 i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~~~~ 171 (177)
+.++.+++.+++.+|++|+++.|++.|++.+..-++..++
T Consensus 98 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~ 137 (172)
T 3htm_A 98 APNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA 137 (172)
T ss_dssp CTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTH
T ss_pred CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999999999999998877666554
No 16
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.93 E-value=1.9e-26 Score=159.76 Aligned_cols=101 Identities=25% Similarity=0.369 Sum_probs=91.9
Q ss_pred HhcCCCcccEEEEeCC----eEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHH
Q psy11355 63 LLDGEDLTDVTLSAGG----RHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQ 137 (177)
Q Consensus 63 l~~~~~~~Dv~l~v~~----~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~ 137 (177)
+++++.+|||++.++| +.|+|||.||+++|+||++||. ++.++. ..|.++++++++|+.+|+|+|||++.++.+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 6789999999999988 8999999999999999999999 677776 899999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCcccHHHHHhhhhhh
Q psy11355 138 QLSSLLSMADALHIRGLADFTGMVSVI 164 (177)
Q Consensus 138 ~v~~ll~~A~~l~i~~L~~~c~~~~~~ 164 (177)
++.+++.+|++|+++.|++.|++.+..
T Consensus 81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~ 107 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPALAKACVNFLET 107 (109)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 999999999999999999999988754
No 17
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.93 E-value=5.3e-27 Score=169.99 Aligned_cols=120 Identities=22% Similarity=0.333 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCCCCHHHHHHHHHHHcCCC
Q psy11355 53 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLYALVTFMYNGE 131 (177)
Q Consensus 53 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~ 131 (177)
++++.+.+.++++++.+|||+|.++|+.|+|||.||+++|+||+++|. ++.++....|.++++++++|+.+++|+|||+
T Consensus 9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~ 88 (145)
T 4eoz_A 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK 88 (145)
T ss_dssp CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCc
Confidence 456899999999999999999999999999999999999999999998 6666667899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhcccccee
Q psy11355 132 VNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVTSGHVL 172 (177)
Q Consensus 132 i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~~~~~ 172 (177)
+.++.+++.+++.+|++|+++.|++.|++.+..-++..+++
T Consensus 89 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~ 129 (145)
T 4eoz_A 89 APNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAA 129 (145)
T ss_dssp CTTGGGTHHHHHHHHHHTTCHHHHHHHHCC-----------
T ss_pred cCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999998877766553
No 18
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.93 E-value=1.4e-26 Score=185.07 Aligned_cols=129 Identities=21% Similarity=0.339 Sum_probs=113.0
Q ss_pred ceeeccCchHHHHHHHHHHHhcCCCcccEEEEeC---CeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeC------
Q psy11355 44 QFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAG---GRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILP------ 113 (177)
Q Consensus 44 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~---~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~------ 113 (177)
...+.++.|+..+++.++++++++.+|||+|.++ |+.|+|||.||+++|+||++||. ++.++....|.++
T Consensus 7 ~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~ 86 (279)
T 3i3n_A 7 AEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEP 86 (279)
T ss_dssp EEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTT
T ss_pred ccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccC
Confidence 4566788899999999999999999999999998 89999999999999999999999 7788888999998
Q ss_pred CCCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhcccccee
Q psy11355 114 GVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVTSGHVL 172 (177)
Q Consensus 114 ~~~~~~~~~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~~~~~ 172 (177)
++++++|+.+++|+|||++.++.+++.+++.+|++|+++.|++.|++.+..-++..+++
T Consensus 87 ~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~ 145 (279)
T 3i3n_A 87 GPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCV 145 (279)
T ss_dssp CSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHH
T ss_pred CCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHH
Confidence 89999999999999999999999999999999999999999999999998887776653
No 19
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.93 E-value=8e-26 Score=159.67 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=93.5
Q ss_pred CchHHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHHHHHHHHHcC
Q psy11355 50 HNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMYN 129 (177)
Q Consensus 50 ~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~~~~L~fiYt 129 (177)
+.+...+++.++ +.++.+|||+|.++|+.|+|||.|||++|+||++ ....|.++++++++|+.+|+|+||
T Consensus 13 ~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~--------~~~~i~l~~v~~~~f~~ll~fiYt 82 (119)
T 3m5b_A 13 PYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR--------RGQWALGEGISPSTFAQLLNFVYG 82 (119)
T ss_dssp TTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC--------CEEEECCSSCCHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc--------CCCEEEeCCCCHHHHHHHHHHHcC
Confidence 334567777775 6789999999999999999999999999999974 235789999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhhh
Q psy11355 130 GEVNIYQQQLSSLLSMADALHIRGLADFTGMVSV 163 (177)
Q Consensus 130 g~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~ 163 (177)
|++.++.+++.+++.+|++|+++.|++.|++...
T Consensus 83 g~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~ 116 (119)
T 3m5b_A 83 ESVELQPGELRPLQEAARALGVQSLEEACWRARG 116 (119)
T ss_dssp CCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC-
T ss_pred CCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999998764
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.90 E-value=9.2e-24 Score=170.98 Aligned_cols=119 Identities=22% Similarity=0.339 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhcCCCcccEEEEeCCeEEEeehhhhhccChHHHHhhc-cccCCCCCEEEeCCCCHHHHHHHHHHHcCCC
Q psy11355 53 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLYALVTFMYNGE 131 (177)
Q Consensus 53 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~-~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~ 131 (177)
++.+.+.+.+++.++.++||+|.++|+.|+|||.|||++|+||+++|. ++.+.....|.++++++++|+.+|+|+|||.
T Consensus 158 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~ 237 (312)
T 3hqi_A 158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK 237 (312)
T ss_dssp CCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCC
Confidence 356889999999999999999999999999999999999999999998 7788888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhccccce
Q psy11355 132 VNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVTSGHV 171 (177)
Q Consensus 132 i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~~~~ 171 (177)
+.+..+++.+++.+|++|+++.|++.|++.+..-++..++
T Consensus 238 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~ 277 (312)
T 3hqi_A 238 APNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA 277 (312)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTH
T ss_pred CCChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHH
Confidence 9999999999999999999999999999998876665544
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.58 E-value=6.2e-15 Score=108.64 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=82.6
Q ss_pred EEEEe-CCeEEEeehhhhhccChHHHHhhcc--cc-CCCCCEEEeCCCCHHHHHHHHHHHcCCC----------------
Q psy11355 72 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKE--ID-GYQHPVIILPGVEFNDLYALVTFMYNGE---------------- 131 (177)
Q Consensus 72 v~l~v-~~~~~~aHr~vLaa~S~~F~~lf~~--~~-e~~~~~i~l~~~~~~~~~~~L~fiYtg~---------------- 131 (177)
|+|+. +|..|.+||.+ |+.|+||+.||.+ .. +.....|.++++++.+++.+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 67765 78999999999 8999999999983 33 5555789999999999999999999987
Q ss_pred ----------CCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhccc
Q psy11355 132 ----------VNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVTS 168 (177)
Q Consensus 132 ----------i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~ 168 (177)
+.++.+++.+|+.+|++|++++|.++|.+.++..+..
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~g 128 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG 128 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 7889999999999999999999999999999887754
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.45 E-value=4.2e-13 Score=90.95 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=65.7
Q ss_pred EEEEe-CCeEEEeehhhhhccChHHHHhhcc---ccCCCCCEEEeCCCCHHHHHHHHHHHc-----C---CCCC---CCH
Q psy11355 72 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKE---IDGYQHPVIILPGVEFNDLYALVTFMY-----N---GEVN---IYQ 136 (177)
Q Consensus 72 v~l~v-~~~~~~aHr~vLaa~S~~F~~lf~~---~~e~~~~~i~l~~~~~~~~~~~L~fiY-----t---g~i~---~~~ 136 (177)
|+++. +|++|.+||.+ |+.|+||++||.+ +.|.....|.++++++.+++.+++|+| + +.+. ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 55655 78999999999 9999999999983 445567899999999999999999999 5 6777 899
Q ss_pred HHHHHHHHHhhhcCc
Q psy11355 137 QQLSSLLSMADALHI 151 (177)
Q Consensus 137 ~~v~~ll~~A~~l~i 151 (177)
+++.+|+.||++|++
T Consensus 83 ~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 83 EIALELLMAANFLDC 97 (97)
T ss_dssp GGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhCC
Confidence 999999999999874
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.36 E-value=2.6e-12 Score=92.75 Aligned_cols=93 Identities=19% Similarity=0.298 Sum_probs=81.9
Q ss_pred EEEEe-CCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHHHHHHHHHcCCC-------------------
Q psy11355 72 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMYNGE------------------- 131 (177)
Q Consensus 72 v~l~v-~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~------------------- 131 (177)
|+++. +|..|.+|+.+ |..|.+++.|+.+.. ...|.+++++..+++.+++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i 79 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG---MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDI 79 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC---CSSEECTTCCHHHHHHHHHHHHHHTTCC----------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC---CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhh
Confidence 66766 78999999998 899999999998422 4579999999999999999999755
Q ss_pred -------CCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhccc
Q psy11355 132 -------VNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVTS 168 (177)
Q Consensus 132 -------i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~~ 168 (177)
+.++.+++.+|+.||++|++++|.++|.+..+..+..
T Consensus 80 ~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikg 123 (141)
T 1fs1_B 80 PVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG 123 (141)
T ss_dssp -HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC
Confidence 6788899999999999999999999999999887754
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.17 E-value=4.6e-12 Score=93.31 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=52.5
Q ss_pred EEEEe-CCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHHHHHHHHHcCCC-------------------
Q psy11355 72 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMYNGE------------------- 131 (177)
Q Consensus 72 v~l~v-~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~------------------- 131 (177)
|+|+. +|..|.+|+.+ |..|++|+.|+.+. .....|.+++++..+++.+++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~--~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~ 82 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDD--CVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDD 82 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC--------------CCTTSCHHHHHHHHHC------------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHcc--CCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccch
Confidence 56665 78999999998 88999999999732 234579999999999999999999875
Q ss_pred --------CCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhcc
Q psy11355 132 --------VNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVT 167 (177)
Q Consensus 132 --------i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~ 167 (177)
+.++.+++.+|+.||++|+|++|.++|.+..+..+.
T Consensus 83 i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 126 (160)
T 2p1m_A 83 LKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIK 126 (160)
T ss_dssp ------------------CHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 356778899999999999999999999999988874
No 25
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.88 E-value=1.4e-08 Score=75.20 Aligned_cols=96 Identities=19% Similarity=0.285 Sum_probs=77.1
Q ss_pred cEEEEe-CCeEEEeehhhhhccChHHHHhhccccC-----CCCCEEEeCCCCHHHHHHHHHHHcCCC-------------
Q psy11355 71 DVTLSA-GGRHMKAHKVVLSACSHYFKQLFKEIDG-----YQHPVIILPGVEFNDLYALVTFMYNGE------------- 131 (177)
Q Consensus 71 Dv~l~v-~~~~~~aHr~vLaa~S~~F~~lf~~~~e-----~~~~~i~l~~~~~~~~~~~L~fiYtg~------------- 131 (177)
-|+|+. +|..|.+++.+ |..|.+++.|+.+... .....|.+++++..+++.|++|+|...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~ 86 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR 86 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence 466665 68899999998 7889999999973221 223689999999999999999996422
Q ss_pred ------------CCCCHHHHHHHHHHhhhcCcccHHHHHhhhhhhhcc
Q psy11355 132 ------------VNIYQQQLSSLLSMADALHIRGLADFTGMVSVIIVT 167 (177)
Q Consensus 132 ------------i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~~~~ 167 (177)
+.++.+.+.+|+.||++|+|++|.++|.+..+..+.
T Consensus 87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 246678889999999999999999999999887764
No 26
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.79 E-value=3e-08 Score=67.07 Aligned_cols=80 Identities=20% Similarity=0.119 Sum_probs=66.3
Q ss_pred cEEEEe-CCeEEEeehhhhhccChHHHHhhccccCCCCCEEEeCCCCHHHHHHHHHHHcCCC--------------CCCC
Q psy11355 71 DVTLSA-GGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMYNGE--------------VNIY 135 (177)
Q Consensus 71 Dv~l~v-~~~~~~aHr~vLaa~S~~F~~lf~~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~--------------i~~~ 135 (177)
-|+++. +|..|.+++.+ |..|.+++.|+.+..+.....|.+++++..+++.+++|+|... -.++
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd 83 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP 83 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCC
Confidence 366766 78999999997 8999999999983124445789999999999999999998532 2577
Q ss_pred HHHHHHHHHHhhhcCc
Q psy11355 136 QQQLSSLLSMADALHI 151 (177)
Q Consensus 136 ~~~v~~ll~~A~~l~i 151 (177)
.+.+.+|+.||++|++
T Consensus 84 ~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 84 TEMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8899999999999975
No 27
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.76 E-value=1.8e-08 Score=67.80 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=63.1
Q ss_pred EEEEe-CCeEEEeehhhhhccChHHHHhhcc--c-cCCCCCEEEeCCCCHHHHHHHHHHHcCCC-----------CCCCH
Q psy11355 72 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKE--I-DGYQHPVIILPGVEFNDLYALVTFMYNGE-----------VNIYQ 136 (177)
Q Consensus 72 v~l~v-~~~~~~aHr~vLaa~S~~F~~lf~~--~-~e~~~~~i~l~~~~~~~~~~~L~fiYtg~-----------i~~~~ 136 (177)
|+++. +|.+|.+++.+ |..|.+++.|+.+ . .+.....|.+++++..+++.+++|+|... -.++.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 56665 78999999997 8999999999983 2 34455789999999999999999998532 25778
Q ss_pred HHHHHHHHHhhhcCc
Q psy11355 137 QQLSSLLSMADALHI 151 (177)
Q Consensus 137 ~~v~~ll~~A~~l~i 151 (177)
+.+.+|+.||++|++
T Consensus 82 ~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 82 EIALELLMAANFLDC 96 (96)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999975
No 28
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.57 E-value=4.7e-07 Score=61.98 Aligned_cols=92 Identities=14% Similarity=0.201 Sum_probs=73.4
Q ss_pred cEEEEeCCeEEEeehhhhhccC-hHHHHhhc-cc----cCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHH-HHHHHH
Q psy11355 71 DVTLSAGGRHMKAHKVVLSACS-HYFKQLFK-EI----DGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQ-QLSSLL 143 (177)
Q Consensus 71 Dv~l~v~~~~~~aHr~vLaa~S-~~F~~lf~-~~----~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~-~v~~ll 143 (177)
-|+|.|||+.|...+..|+... .+|..||. .. ......++-+ |-++..|+.+|+|+.+|++.++.+ ....++
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~ 85 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 85 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHH
Confidence 3678899999999999998875 46788876 21 1123445666 679999999999999999877553 357899
Q ss_pred HHhhhcCcccHHHHHhhhhh
Q psy11355 144 SMADALHIRGLADFTGMVSV 163 (177)
Q Consensus 144 ~~A~~l~i~~L~~~c~~~~~ 163 (177)
+-|++|+++.|++.|+++..
T Consensus 86 ~Ea~fy~l~~L~~~l~~~i~ 105 (107)
T 3drz_A 86 EEAEFYNITSLIKLVKDKIR 105 (107)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999998754
No 29
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.38 E-value=9.9e-07 Score=60.87 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=63.0
Q ss_pred cEEEEe-CCeEEEeehhhhhccChHHHHhhccc---cCCCCCEEEeCCCCHHHHHHHHHHHcCCC-----------CCCC
Q psy11355 71 DVTLSA-GGRHMKAHKVVLSACSHYFKQLFKEI---DGYQHPVIILPGVEFNDLYALVTFMYNGE-----------VNIY 135 (177)
Q Consensus 71 Dv~l~v-~~~~~~aHr~vLaa~S~~F~~lf~~~---~e~~~~~i~l~~~~~~~~~~~L~fiYtg~-----------i~~~ 135 (177)
-|+|+. +|.+|.+.+.+ |..|..++.|+.+. .+.....|.+++++..+++.+++|+|... ..++
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd 96 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 96 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence 466664 78999999995 78899999999732 34444689999999999999999997422 2578
Q ss_pred HHHHHHHHHHhhhcCc
Q psy11355 136 QQQLSSLLSMADALHI 151 (177)
Q Consensus 136 ~~~v~~ll~~A~~l~i 151 (177)
.+.+.+|+.||++|++
T Consensus 97 ~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 97 PEIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8899999999999975
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.66 E-value=7.5e-05 Score=56.41 Aligned_cols=91 Identities=14% Similarity=0.208 Sum_probs=71.3
Q ss_pred EEEEeCCeEEEeehhhhhccC-hHHHHhhccc-c----CCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHH-HHHHHHH
Q psy11355 72 VTLSAGGRHMKAHKVVLSACS-HYFKQLFKEI-D----GYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQ-QLSSLLS 144 (177)
Q Consensus 72 v~l~v~~~~~~aHr~vLaa~S-~~F~~lf~~~-~----e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~-~v~~ll~ 144 (177)
|.|.|||..|...+..|.... .+|..||.+. . ....+++-+ |-++..|+.||+|+-+|++.++.+ ....++.
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~e 92 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLE 92 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHHHHH
Confidence 667899999999999998764 4677787621 1 112345655 468999999999999999887553 3467999
Q ss_pred HhhhcCcccHHHHHhhhhh
Q psy11355 145 MADALHIRGLADFTGMVSV 163 (177)
Q Consensus 145 ~A~~l~i~~L~~~c~~~~~ 163 (177)
-|++|+++.|++.|++...
T Consensus 93 EA~FygL~~Lv~~l~~~i~ 111 (202)
T 3drx_A 93 EAEFYNITSLIKLVKDKIR 111 (202)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCcHHHHHHHHHHHH
Confidence 9999999999999988764
No 31
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=97.20 E-value=0.0013 Score=45.92 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=64.9
Q ss_pred cEEEEeCCeEEEeehhhhhccChHHHHhhc--cccCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHhh
Q psy11355 71 DVTLSAGGRHMKAHKVVLSACSHYFKQLFK--EIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQ-QLSSLLSMAD 147 (177)
Q Consensus 71 Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~--~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~-~v~~ll~~A~ 147 (177)
=|+|.|||..|..-+..|......+-+.-. .......+.+-+ |=++..|+.||+|+-+|++.++.+ .+..+++-|+
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~Ea~ 92 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELA 92 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCCceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Confidence 477889999999999999765332211100 011123345666 459999999999999999887654 4788999999
Q ss_pred hcCcccH--HHHHhhhhh
Q psy11355 148 ALHIRGL--ADFTGMVSV 163 (177)
Q Consensus 148 ~l~i~~L--~~~c~~~~~ 163 (177)
+|+++.+ ...|++...
T Consensus 93 fy~i~~l~l~~cC~~~~~ 110 (124)
T 1s1g_A 93 FYGILPEIIGDCCYEEYK 110 (124)
T ss_dssp HTTCCGGGBCHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHH
Confidence 9999997 355665543
No 32
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=96.76 E-value=0.0026 Score=45.29 Aligned_cols=83 Identities=10% Similarity=0.075 Sum_probs=60.6
Q ss_pred cEEEEeCCeEEEeehhhhhccChHHHHhhcc--ccCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHhh
Q psy11355 71 DVTLSAGGRHMKAHKVVLSACSHYFKQLFKE--IDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQ-QLSSLLSMAD 147 (177)
Q Consensus 71 Dv~l~v~~~~~~aHr~vLaa~S~~F~~lf~~--~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~-~v~~ll~~A~ 147 (177)
=|+|.|||..|...+..|......+-..-.. ......+++-+ |=++..|+.||+|+-+|++.+..+ .+..+++-|+
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P~S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~eEa~ 114 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELA 114 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCTTSTTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHHHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCCCeeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHHHHH
Confidence 4778999999999999997653322111000 11123456666 459999999999999999876543 4788999999
Q ss_pred hcCcccH
Q psy11355 148 ALHIRGL 154 (177)
Q Consensus 148 ~l~i~~L 154 (177)
+|+|+.+
T Consensus 115 fy~i~~l 121 (140)
T 2nz0_B 115 FYGILPE 121 (140)
T ss_dssp HHTCCGG
T ss_pred HcCCChH
Confidence 9999997
No 33
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=96.72 E-value=0.0015 Score=44.23 Aligned_cols=90 Identities=8% Similarity=0.031 Sum_probs=63.7
Q ss_pred EEEEeCCeEEEeehhhhhccChHH-HHhhc-cccCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHhhh
Q psy11355 72 VTLSAGGRHMKAHKVVLSACSHYF-KQLFK-EIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQ-QLSSLLSMADA 148 (177)
Q Consensus 72 v~l~v~~~~~~aHr~vLaa~S~~F-~~lf~-~~~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~-~v~~ll~~A~~ 148 (177)
|+|.|||..|...+..|......+ ...-. .......+.+-+. =++..|+.+|+|+-+|++.++.+ .+..+++-|++
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~~FiD-Rdp~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea~f 80 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFD-RDPDIFRHILNFYRTGKLHYPRHECISAYDEELAF 80 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEEC-SCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCccccccCCcccccCCCCcEEEe-CCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 678999999999999997654321 11100 0011233566664 58999999999999999876543 47889999999
Q ss_pred cCcccH--HHHHhhhh
Q psy11355 149 LHIRGL--ADFTGMVS 162 (177)
Q Consensus 149 l~i~~L--~~~c~~~~ 162 (177)
|+++.+ ...|.+..
T Consensus 81 y~i~~l~~~~cc~~~~ 96 (105)
T 1nn7_A 81 FGLIPEIIGDCCYEEY 96 (105)
T ss_dssp HTCCSCCBCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 999996 34565554
No 34
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=96.72 E-value=0.0019 Score=44.42 Aligned_cols=89 Identities=9% Similarity=0.050 Sum_probs=65.5
Q ss_pred EEEEeCCeEEEeehhhhhccCh-HHHHhhccc--cCCCCCEEEeCCCCHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHhh
Q psy11355 72 VTLSAGGRHMKAHKVVLSACSH-YFKQLFKEI--DGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQ-QLSSLLSMAD 147 (177)
Q Consensus 72 v~l~v~~~~~~aHr~vLaa~S~-~F~~lf~~~--~e~~~~~i~l~~~~~~~~~~~L~fiYtg~i~~~~~-~v~~ll~~A~ 147 (177)
|+|.|||..|...+..|..... .+..++... .....+++-+ |=++..|+.+|+|+-+|++.++.+ .+..+++-|+
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~ 85 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELE 85 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHH
Confidence 6789999999999999987643 344555421 1123456666 468999999999999999877653 4678999999
Q ss_pred hcCcccHH--HHHhhh
Q psy11355 148 ALHIRGLA--DFTGMV 161 (177)
Q Consensus 148 ~l~i~~L~--~~c~~~ 161 (177)
+|+++... ..|+..
T Consensus 86 fy~i~~~~l~~CC~~~ 101 (115)
T 3kvt_A 86 FWGLDSNQVEPCCWMT 101 (115)
T ss_dssp HHTCCGGGBCGGGSHH
T ss_pred HhCCChHHHHHHHHHH
Confidence 99999863 335444
No 35
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=96.60 E-value=0.0057 Score=40.95 Aligned_cols=88 Identities=9% Similarity=0.034 Sum_probs=63.2
Q ss_pred EEEEeCCeEEEeehhhhhccCh-HHHHhhc--cccCCCCCEEEeCCCCHHHHHHHHHHHcC-CCCCCCHH-HHHHHHHHh
Q psy11355 72 VTLSAGGRHMKAHKVVLSACSH-YFKQLFK--EIDGYQHPVIILPGVEFNDLYALVTFMYN-GEVNIYQQ-QLSSLLSMA 146 (177)
Q Consensus 72 v~l~v~~~~~~aHr~vLaa~S~-~F~~lf~--~~~e~~~~~i~l~~~~~~~~~~~L~fiYt-g~i~~~~~-~v~~ll~~A 146 (177)
|+|.|||..|...+..|+..-. .+..++. ........++-+ |=++..|+.+|+|+-+ |++..+.+ .+..+++-|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 6788999999999999976532 2333333 111123456666 4589999999999998 89876543 467899999
Q ss_pred hhcCcccH-HHHHhh
Q psy11355 147 DALHIRGL-ADFTGM 160 (177)
Q Consensus 147 ~~l~i~~L-~~~c~~ 160 (177)
++|+++.+ .+.|.+
T Consensus 82 ~fy~i~~~~~~~~~~ 96 (100)
T 1t1d_A 82 KFYELGENAFERYRE 96 (100)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHH
Confidence 99999985 455544
No 36
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=90.77 E-value=0.61 Score=39.75 Aligned_cols=84 Identities=10% Similarity=0.042 Sum_probs=60.0
Q ss_pred cEEEEeCCeEEEeehhhhhccChHH-HHhhc--cccCCCCCEEEeCCCCHHHHHHHHHHHcC-CCCCCCHH-HHHHHHHH
Q psy11355 71 DVTLSAGGRHMKAHKVVLSACSHYF-KQLFK--EIDGYQHPVIILPGVEFNDLYALVTFMYN-GEVNIYQQ-QLSSLLSM 145 (177)
Q Consensus 71 Dv~l~v~~~~~~aHr~vLaa~S~~F-~~lf~--~~~e~~~~~i~l~~~~~~~~~~~L~fiYt-g~i~~~~~-~v~~ll~~ 145 (177)
=|+|.|||..|...+..|...-.-+ ..++. ..-....+++-+ |=++..|+.+|+|+.+ |++..+.+ ....+.+=
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~E 131 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEE 131 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHHHHHH
Confidence 4677899999999999987653222 11221 111123456666 5699999999999999 99876543 45678999
Q ss_pred hhhcCcccHH
Q psy11355 146 ADALHIRGLA 155 (177)
Q Consensus 146 A~~l~i~~L~ 155 (177)
|++|++.++.
T Consensus 132 ~~f~~i~~~~ 141 (514)
T 2r9r_B 132 IRFYELGEEA 141 (514)
T ss_dssp HHHTTCCHHH
T ss_pred HHhcCCCHHH
Confidence 9999999864
No 37
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.31 E-value=2 Score=28.21 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=28.5
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcccHHHHHhhhh
Q psy11355 130 GEVNIYQQQLSSLLSMADALHIRGLADFTGMVS 162 (177)
Q Consensus 130 g~i~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~ 162 (177)
+.-.++++|...++.+|+.|+++.|.+.|.+..
T Consensus 4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi 36 (105)
T 2eqx_A 4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCA 36 (105)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455788999999999999999999999887654
No 38
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=51.49 E-value=9.8 Score=26.51 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHhhhcCcccHHHHHhhhhh
Q psy11355 133 NIYQQQLSSLLSMADALHIRGLADFTGMVSV 163 (177)
Q Consensus 133 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~ 163 (177)
.++.+++..++..|..++++.|.+.|.+...
T Consensus 131 ~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~ 161 (172)
T 3htm_A 131 NLSVENAAEILILADLHSADQLKTQAVDFIN 161 (172)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4677899999999999999999999987754
No 39
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=40.35 E-value=17 Score=28.12 Aligned_cols=32 Identities=16% Similarity=0.064 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHhhhcCcccHHHHHhhhhhh
Q psy11355 133 NIYQQQLSSLLSMADALHIRGLADFTGMVSVI 164 (177)
Q Consensus 133 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~~~ 164 (177)
.++.+++..++.+|+.++++.|++.|-+....
T Consensus 271 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 302 (312)
T 3hqi_A 271 NLSVENAAEILILADLHSADQLKTQAVDFINY 302 (312)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35778999999999999999999999887654
No 40
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=26.84 E-value=26 Score=23.61 Aligned_cols=69 Identities=17% Similarity=0.340 Sum_probs=42.3
Q ss_pred hHHHHhhc--cccCCCCCEEE-eCCCCHHHHH-----HHHHHHcCCC-C-CCCHHHHHHHHHHhhhcCcccHHHHHhhh
Q psy11355 93 HYFKQLFK--EIDGYQHPVII-LPGVEFNDLY-----ALVTFMYNGE-V-NIYQQQLSSLLSMADALHIRGLADFTGMV 161 (177)
Q Consensus 93 ~~F~~lf~--~~~e~~~~~i~-l~~~~~~~~~-----~~L~fiYtg~-i-~~~~~~v~~ll~~A~~l~i~~L~~~c~~~ 161 (177)
.|||++|. ...++....|. +.++++.-|- ++|+=+=-|- + ...++.|...+.-...+.++++.-+|.+.
T Consensus 19 n~fRk~fkD~R~~GskKvviNvis~~~y~e~v~~~REAiLDNIDlG~el~~WKp~eVdkm~~k~~q~~~dGl~iYCDde 97 (126)
T 2rbg_A 19 NYFRKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLENIDIGYELFLWKKNEVDIFLKNLEKSEVDGLLVYCDDE 97 (126)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEECSSCHHHHHHHTHHHHHHTTTSEEEEEEECGGGHHHHHHHHTTCCCCEEEEEECGG
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHHHHHhccccceEEEEeCHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 68999998 33344433443 3455554332 3333221111 1 23568888888888899999998888875
No 41
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=24.66 E-value=44 Score=25.31 Aligned_cols=30 Identities=13% Similarity=0.064 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHhhhcCcccHHHHHhhhh
Q psy11355 133 NIYQQQLSSLLSMADALHIRGLADFTGMVS 162 (177)
Q Consensus 133 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~ 162 (177)
.++.+++..++..|+.++++.|.+.|.+..
T Consensus 138 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i 167 (279)
T 3i3n_A 138 KLHLSNCVAIHSLAHMYTLSQLALKAADMI 167 (279)
T ss_dssp HCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 467789999999999999999999886653
No 42
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=24.52 E-value=33 Score=25.59 Aligned_cols=30 Identities=7% Similarity=-0.055 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHhhhcCcccHHHHHhhhh
Q psy11355 133 NIYQQQLSSLLSMADALHIRGLADFTGMVS 162 (177)
Q Consensus 133 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~~ 162 (177)
.++.+++..++..|+.++++.|.+.|.+..
T Consensus 130 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i 159 (256)
T 3hve_A 130 CIAAENCIGIRDFALHYCLHHVHYLATEYL 159 (256)
T ss_dssp TCCSSTTHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCHhhHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 356678999999999999999999986653
No 43
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=23.07 E-value=1.2e+02 Score=19.72 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhhcCc-ccHHHHHhhhhhhhccccceeccccC
Q psy11355 115 VEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHI-RGLADFTGMVSVIIVTSGHVLLKVLR 177 (177)
Q Consensus 115 ~~~~~~~~~L~fiYtg~i~~~~~~v~~ll~~A~~l~i-~~L~~~c~~~~~~~~~~~~~~~~~~~ 177 (177)
.++.+.+.+-+||-+=+-.+++.++.....+-..|.. -.+.++|.+.+..--++--.++.-+|
T Consensus 10 ~s~~a~e~lqdYM~~L~~~L~~~ElqqFA~Llr~YR~G~~I~~Fc~kLl~LyG~~Rk~LL~gmR 73 (98)
T 4fqn_A 10 LSASATELLQDYMLTLRTKLSSQEIQQFAALLHEYRNGASIHEFCINLRQLYGDSRKFLLLGLR 73 (98)
T ss_dssp HCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCGGGGGGGGGGG
T ss_pred cchhHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhchHHHHHHhhcc
Confidence 5678899999999887777888888776655544332 36888998888776666555554443
Done!