RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11355
(177 letters)
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain. The BTB (for BR-C, ttk and bab) or
POZ (for Pox virus and Zinc finger) domain is present
near the N-terminus of a fraction of zinc finger
(pfam00096) proteins and in proteins that contain the
pfam01344 motif such as Kelch and a family of pox virus
proteins. The BTB/POZ domain mediates homomeric
dimerisation and in some instances heteromeric
dimerisation. The structure of the dimerised PLZF
BTB/POZ domain has been solved and consists of a tightly
intertwined homodimer. The central scaffolding of the
protein is made up of a cluster of alpha-helices flanked
by short beta-sheets at both the top and bottom of the
molecule. POZ domains from several zinc finger proteins
have been shown to mediate transcriptional repression
and to interact with components of histone deacetylase
co-repressor complexes including N-CoR and SMRT. The POZ
or BTB domain is also known as BR-C/Ttk or ZiN.
Length = 101
Score = 84.2 bits (209), Expect = 8e-22
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 62 QLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLY 121
+L + +L DVTL G + AHK VL+ACS YFK LF I L V D
Sbjct: 3 ELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKE---VEITLEDVSPEDFE 59
Query: 122 ALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLAD 156
AL+ F+Y G++ I ++ + LL++AD L I L D
Sbjct: 60 ALLEFIYTGKLEITEENVDDLLALADKLQIPALID 94
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac. Domain
in Broad-Complex, Tramtrack and Bric a brac. Also known
as POZ (poxvirus and zinc finger) domain. Known to be a
protein-protein interaction motif found at the N-termini
of several C2H2-type transcription factors as well as
Shaw-type potassium channels. Known structure reveals a
tightly intertwined dimer formed via interactions
between N-terminal strand and helix structures. However
in a subset of BTB/POZ domains, these two secondary
structures appear to be missing. Be aware SMART predicts
BTB/POZ domains without the beta1- and alpha1-secondary
structures.
Length = 97
Score = 76.2 bits (188), Expect = 1e-18
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 71 DVTLSAGGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLYALVTFMYN 129
DVTL GG+ AHK VL+A S YFK LF + I L V D AL+ F+Y
Sbjct: 1 DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYT 60
Query: 130 GEVNIYQQQLSSLLSMADALHIRGLAD 156
G++++ ++ + LL +AD L I GL +
Sbjct: 61 GKLDLPEENVEELLELADYLQIPGLVE 87
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 49.8 bits (119), Expect = 2e-07
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 72 VTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMYNGE 131
+ + GG +K HK++LS+ S YFK++FK + ++ I L +++ ++ ++Y G+
Sbjct: 14 IIIVNGGGIIKVHKIILSSSSEYFKKMFK--NNFKENEINLNI-DYDSFNEVIKYIYTGK 70
Query: 132 VNIYQQQLSSLLSMADALHI 151
+NI + +LS+A+ L I
Sbjct: 71 INITSNNVKDILSIANYLII 90
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 39.2 bits (91), Expect = 5e-04
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 56 LLATLPQLLDGEDLTDVTLSAG-GRHMKAHKVVLSACSHYFKQLF 99
+++ + LLD + L DV ++ G G +KAHK +L+A S YF+ LF
Sbjct: 12 VVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLF 56
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 30.6 bits (70), Expect = 0.45
Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 72 VTLSAGGRHMKAHKVVLSACSH--YFKQLFKEI-DGYQHPVIILPGVEFNDL-------- 120
V L+ G +++A +++ +Q+ +EI + + LP + +L
Sbjct: 185 VELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPD-QLQELKAGYRELV 243
Query: 121 ---YALVTFMYNGEVNIYQQQLSSLLSMADALHI 151
Y L E+ ++Q+ L++ + L +
Sbjct: 244 EEGYHLDHLDIEKEIQDLKEQIDENLALLEELDL 277
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerises into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 29.8 bits (68), Expect = 0.82
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 15/94 (15%)
Query: 72 VTLSAGGRHMKAHKVVLSACSH--YFKQLFKEI-DGYQHPVIILPGVEFNDL-------- 120
V L+ G +++A +V+L +Q +EI + P + +L
Sbjct: 181 VELTESGDYLEAREVLLKLEEETDALEQKMEEIPPLLKELQNEFPD-QLEELKAGYREMT 239
Query: 121 ---YALVTFMYNGEVNIYQQQLSSLLSMADALHI 151
Y E+ ++Q+ L++ + L +
Sbjct: 240 EEGYHFDHLDIEKELQDLKEQIDQNLALLEELDL 273
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 28.9 bits (64), Expect = 1.7
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 23 TSLFTVRSSQSTMDPQLDGSQQFCLRWHNYQTSLLATLP-------QLLDGEDLTDVTLS 75
T F ++ + + +LD + H TS L T P +LL+ DL+ ++
Sbjct: 428 TLSFIAKNDEGSTHEKLD------FKLHFTCTSYLITTPCYSDAFAKLLESGDLSMSSIK 481
Query: 76 AGGRHMKAHKVVLSACSHYFKQLFKEID 103
G M H ++ C H+ + + +D
Sbjct: 482 VDGIDMSFHNLLAKICFHHHFSVVERVD 509
>gnl|CDD|239946 cd04502, SGNH_hydrolase_like_7, Members of the SGNH-hydrolase
superfamily, a diverse family of lipases and esterases.
The tertiary fold of the enzyme is substantially
different from that of the alpha/beta hydrolase family
and unique among all known hydrolases; its active site
closely resembles the Ser-His-Asp(Glu) triad from other
serine hydrolases, but may lack the carboxlic acid.
Length = 171
Score = 27.6 bits (62), Expect = 2.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 88 LSACSHYFKQLFKEIDGYQHPVIILPGVEFNDL 120
L+ C HYF +L YQ ++L + NDL
Sbjct: 35 LADCLHYFDRLVL---PYQPRRVVLYAGD-NDL 63
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 28.4 bits (63), Expect = 2.8
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 26/84 (30%)
Query: 35 MDPQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHY 94
MDPQL ++ C PQ DG D D R+ + V +
Sbjct: 515 MDPQL--GKKLCY----------VQFPQRFDGIDRHD-------RYANRNVV-------F 548
Query: 95 FKQLFKEIDGYQHPVIILPGVEFN 118
F K +DG Q PV + G FN
Sbjct: 549 FDINMKGLDGIQGPVYVGTGCVFN 572
>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase,
Axl. Protein Tyrosine Kinase (PTK) family; Axl;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl is a member of the
Axl subfamily, which is composed of receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with two immunoglobulin-like domains followed by two
fibronectin type III repeats, a transmembrane segment,
and an intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl is widely expressed in a
variety of organs and cells including epithelial,
mesenchymal, hematopoietic, as well as non-transformed
cells. Axl signaling is important in many cellular
functions such as survival, anti-apoptosis,
proliferation, migration, and adhesion. Axl was
originally isolated from patients with chronic
myelogenous leukemia and a chronic myeloproliferative
disorder. Axl is overexpressed in many human cancers
including colon, squamous cell, thyroid, breast, and
lung carcinomas.
Length = 272
Score = 27.7 bits (61), Expect = 3.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 101 EIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMAD 147
E +GY PV+ILP ++ DL++ + + G+ Y + M D
Sbjct: 74 ESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTD 120
>gnl|CDD|182600 PRK10631, PRK10631, p-hydroxybenzoic acid efflux subunit AaeB;
Provisional.
Length = 652
Score = 28.1 bits (63), Expect = 3.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 73 TLSAGGRHMK--AHKVVLSA----CSHYFKQLFKEIDGYQH 107
LSA R ++ A V+ + YF QL +E+D YQ
Sbjct: 581 DLSAFHRQLRRTADHVISARSDDKRRRYFGQLLEELDIYQE 621
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 27.0 bits (60), Expect = 6.1
Identities = 14/65 (21%), Positives = 17/65 (26%)
Query: 5 LLLFIRQLVHHHCLTSSFTSLFTVRSSQSTMDPQLDGSQQFCLRWHNYQTSLLATLPQLL 64
LL F + T F + + L LR HN L
Sbjct: 47 LLPFNNPNPSMGTIGLPPTRCFIAGDPRVNENLLLLAVHTLFLREHNRLADRLKKEHPEW 106
Query: 65 DGEDL 69
D E L
Sbjct: 107 DDERL 111
>gnl|CDD|217532 pfam03395, Pox_P4A, Poxvirus P4A protein.
Length = 889
Score = 27.1 bits (60), Expect = 6.7
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 102 IDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLL 143
+ +H ++ + F D Y V YNG Y+ ++ ++
Sbjct: 246 MPTKKHLIMYIQ--YFVDNYHEVPLKYNGGDVAYEDEIINIS 285
>gnl|CDD|218986 pfam06317, Arena_RNA_pol, Arenavirus RNA polymerase. This family
consists of several Arenavirus RNA polymerase proteins
(EC:2.7.7.48).
Length = 2206
Score = 26.9 bits (60), Expect = 7.7
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 5 LLLFIRQLVHHHCLTSSFTSLFTVRSSQSTMDPQLDGSQQ-FCLRWHNYQTSLLATL 60
+ + L L+S +L+ R S +D +Q+ F L NY+ L +L
Sbjct: 2100 IEKALGALEDSELLSSFLANLWPYRKSTGLHWLGIDITQEDFRLMIDNYEEFLTESL 2156
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 26.6 bits (59), Expect = 9.1
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 16/58 (27%)
Query: 72 VTLSAGGRHMKAHKVVLSA------CSHYFKQ---LFKEIDGYQHPVIILPGVEFNDL 120
V L++ G +++A +V+ A ++ L E+ LPG + DL
Sbjct: 184 VELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQT------ELPG-QLQDL 234
>gnl|CDD|239505 cd03412, CbiK_N, Anaerobic cobalamin biosynthetic cobalt chelatase
(CbiK), N-terminal domain. CbiK is part of the
cobalt-early path for cobalamin biosynthesis. It
catalyzes the insertion of cobalt into the oxidized form
of precorrin-2, factor II (sirohydrochlorin), the second
step of the anaerobic branch of vitamin B12
biosynthesis. CbiK belongs to the class II family of
chelatases and is a homomeric enzyme that does not
require ATP for its enzymatic activity.
Length = 127
Score = 25.6 bits (57), Expect = 9.1
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 103 DGYQHPVI----ILPGVEFNDLYALVT 125
DGY ++ I+PG E+ L V
Sbjct: 68 DGYTEVIVQSLHIIPGEEYEKLKREVD 94
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.138 0.412
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,899,852
Number of extensions: 797006
Number of successful extensions: 950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 947
Number of HSP's successfully gapped: 21
Length of query: 177
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 86
Effective length of database: 6,901,388
Effective search space: 593519368
Effective search space used: 593519368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.3 bits)