RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11355
(177 letters)
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 86.9 bits (216), Expect = 8e-23
Identities = 29/117 (24%), Positives = 50/117 (42%)
Query: 41 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 100
GS + + T++L L + L DVTL + +AH+ VL+ACS YF Q
Sbjct: 4 GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALV 63
Query: 101 EIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADF 157
V + V L+ F Y ++ + ++ + ++ A+ L + L D
Sbjct: 64 GQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 85.3 bits (212), Expect = 3e-22
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 41 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 100
GS +++ + + +L L +L + LTDV + +AHK VL ACS F +F
Sbjct: 1 GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFT 60
Query: 101 -EIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADF 157
++ + + P + L+ FMY +N+ + + ++++ A L + + D
Sbjct: 61 DQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 118
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 85.4 bits (212), Expect = 5e-22
Identities = 25/116 (21%), Positives = 48/116 (41%)
Query: 42 SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKE 101
S F + T++L +L + L DVT+ G+ +AH+ VL+ACS YF
Sbjct: 9 SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG 68
Query: 102 IDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADF 157
+ V + V L+ F Y ++ + + + + + L + + +
Sbjct: 69 QTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 84.2 bits (209), Expect = 1e-21
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 42 SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKE 101
+Q + N+ S+L L + DV++ G KAH+ VL+A S YF+ LF
Sbjct: 6 AQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNN 65
Query: 102 IDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADF 157
V + V+ +++F Y G +++ L+ A L I+ + +
Sbjct: 66 --SRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEK 119
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 83.4 bits (207), Expect = 2e-21
Identities = 22/110 (20%), Positives = 47/110 (42%)
Query: 48 RWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQH 107
+ T++L +L + L DVT+ G+ +AH+ VL+ACS YF +
Sbjct: 8 ESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGEL 67
Query: 108 PVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADF 157
+ + V L+ F Y ++ + ++ + + + L + + +
Sbjct: 68 NITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEES 117
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 83.9 bits (208), Expect = 3e-21
Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 5/134 (3%)
Query: 29 RSSQSTMDPQLDGS--QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKV 86
S +D + Q + + LL L + D L G + K
Sbjct: 5 HHHSSGVDLGTENLYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKN 64
Query: 87 VLSACSHYFKQLFKEIDGY---QHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLL 143
+L+A S Y + I L G+ + ++ ++++G++ + + + ++
Sbjct: 65 ILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVV 124
Query: 144 SMADALHIRGLADF 157
AD L + L
Sbjct: 125 QAADLLLLTDLKTL 138
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 83.0 bits (206), Expect = 3e-21
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 46 CLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF-KEIDG 104
+ + ++ + +L+ L + L DV + GR H+ VL+ACS YFK+LF
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVV 61
Query: 105 YQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADF 157
Q V + V L AL+ F Y + + + +LS A L I ++
Sbjct: 62 DQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHV 114
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 83.1 bits (206), Expect = 4e-21
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 51 NYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVI 110
+ +L L + + D TL GG KAH VL+ CSH+F++++ + +
Sbjct: 7 GHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGD---GTGGSV 63
Query: 111 ILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADF 157
+LP L+ F Y G + + +L A L + +
Sbjct: 64 VLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVEL 110
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 82.3 bits (204), Expect = 5e-21
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 41 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 100
G H +L L Q L D T G H KAHK VL+ACS YFK LF
Sbjct: 1 GPLGSDFPQH--SQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV 58
Query: 101 EIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADF 157
+ Q V+ L L ++ FMY ++++ + + +L++A L ++ +
Sbjct: 59 D----QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITA 111
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 81.5 bits (202), Expect = 8e-21
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 51 NYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVI 110
++ LL L + + L D T+ G KAH+ VL++ S YF +++ + +
Sbjct: 4 HHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRS-TSENNVFL 62
Query: 111 ILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADF 157
V+ + L+ F+Y G +N+ + + AD L + +
Sbjct: 63 DQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTK 109
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 81.5 bits (202), Expect = 9e-21
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 51 NYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVI 110
+ +L L + + D TL GG KAH VL+ CSH+F+ L+ + +
Sbjct: 6 QHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGD---GSGGSV 62
Query: 111 ILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADF 157
+LP L+ F Y G + + +L A L + +
Sbjct: 63 VLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVEL 109
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 80.3 bits (199), Expect = 3e-20
Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 6/117 (5%)
Query: 41 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 100
G Q H T LL Q+ L DV + + AH+ VL+ S F+ LF
Sbjct: 2 GMIQLQNPSH--PTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH 59
Query: 101 EIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLADF 157
L + ++ + Y + + L LL A+ L I L +
Sbjct: 60 R----NSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQ 112
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 80.3 bits (199), Expect = 4e-19
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 3/110 (2%)
Query: 50 HNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGY---Q 106
+ LL L + D L G + K +L+A S Y +
Sbjct: 12 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGS 71
Query: 107 HPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLAD 156
I L G+ + ++ ++++G++ + + + ++ AD L + L
Sbjct: 72 TYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKT 121
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 76.8 bits (190), Expect = 1e-18
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 56 LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFK-QLFKEIDGYQHPVIILPG 114
L L L + TD L G+ +AHK +L+A S F E++ + + +
Sbjct: 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 71
Query: 115 VEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGL 154
VE ++ F+Y G+ + LL+ AD + L
Sbjct: 72 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 111
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 75.4 bits (186), Expect = 2e-18
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 39 LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 98
++ + Y SLL +L + DVT+ R +AHK +LSA S YF QL
Sbjct: 1 MESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQL 60
Query: 99 FKEIDGYQHPVIILPGVEFNDLYALVTFMYNGE-VNIYQQQLSSLLSMADALHIRGLAD 156
F V+ L + ++ ++Y+ + V + L L+ L ++ +A
Sbjct: 61 FSV----AGQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 75.4 bits (186), Expect = 2e-18
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 52 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVII 111
Y + L L L L D ++ G + AH +VL+ S + + +
Sbjct: 14 YGSDRLVQLAARLRPA-LCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQ--------WAL 64
Query: 112 LPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLAD 156
G+ + L+ F+Y V + +L L A AL ++ L +
Sbjct: 65 GEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEE 109
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 75.8 bits (187), Expect = 6e-18
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 56 LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFK-QLFKEIDGYQHPVIILPG 114
L L L + TD L G+ +AHK +L+A S F E++ + + +
Sbjct: 21 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 80
Query: 115 VEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGL 154
VE ++ F+Y G+ + LL+ AD + L
Sbjct: 81 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 120
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 74.6 bits (184), Expect = 1e-16
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 16/128 (12%)
Query: 42 SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTL---SAGGRHMKAHKVVLSACSHYFKQL 98
++ F H + L + D+TL AGGR +AH+ VL+A + YF L
Sbjct: 7 AEDFECSSH--CSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPL 64
Query: 99 F---------KEIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADAL 149
++ PG E + + A++ +MY G + + + +L +AD
Sbjct: 65 LSGQFSESRSGRVE--MRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRF 122
Query: 150 HIRGLADF 157
+ L +F
Sbjct: 123 LLIRLKEF 130
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 69.5 bits (171), Expect = 3e-16
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 12/102 (11%)
Query: 63 LLDGEDLTDVTLSAG----GRHMKAHKVVLSACSHYFKQLF----KEIDGYQHPVIILPG 114
+ + E + DV G R + AHK VL+ S F +F E I +P
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAE----VKSEIHIPD 57
Query: 115 VEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLAD 156
VE L+ +MY+ E+++ + + L A + LA
Sbjct: 58 VEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAK 99
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 72.2 bits (177), Expect = 9e-16
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 56 LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFK-QLFKEIDGYQHPVIILPG 114
L L L + TD L G+ +AHK +L+A S F E++ + + +
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 220
Query: 115 VEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGL 154
VE ++ F+Y G+ + LL+ AD + L
Sbjct: 221 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 260
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.17
Identities = 32/230 (13%), Positives = 63/230 (27%), Gaps = 86/230 (37%)
Query: 5 LLLFIRQLVHHHCLTSSFTSLFTVRSSQSTMDPQLDGSQQFCLR----WHNYQTSLLATL 60
+L + Q + + +T RS S+ S Q LR Y+ LL L
Sbjct: 197 TVLEMLQKLLYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VL 250
Query: 61 -----PQLLDGEDL-------------TDVTLSAGGRH---------------------- 80
+ + +L TD +A H
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 81 --MKAHKVVLSACSHY------FKQLFKE----IDGYQHP-------VI-----ILPGVE 116
+ + + + ++ D ++H +I +L E
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 117 FNDLY-ALVTFMYNGEVNIYQQQLSSL---------LSMADALHIRGLAD 156
+ ++ L F + +I LS + + + + LH L +
Sbjct: 371 YRKMFDRLSVFPPS--AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Score = 27.9 bits (61), Expect = 2.2
Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 42/152 (27%)
Query: 10 RQLVHHHCLTSSFTSLFTVRSSQSTMDPQLDGSQQFCLRWHNY---------QTSLLATL 60
R +V H+ + +F S + P LD ++++ +
Sbjct: 447 RSIVDHYNIPKTF-------DSDDLIPPYLDQY------FYSHIGHHLKNIEHPERMTLF 493
Query: 61 PQLLDGEDLTDVTLSAGGRHMKA---HKVVLSACSHYFKQLFKEIDGY-QHPVIILPGVE 116
+ D R ++ H S +++ Y + I
Sbjct: 494 RMVF--LDF---------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY---ICDNDP 539
Query: 117 FND--LYALVTFMYNGEVNIYQQQLSSLLSMA 146
+ + A++ F+ E N+ + + LL +A
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.29
Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 101/194 (52%)
Query: 38 QLDGSQQ------FCLRWHNYQTSLLATLPQLLD----------GEDLTDV--------T 73
Q GSQ+ Y+TS A + + G + D+ T
Sbjct: 1624 Q--GSQEQGMGMDL------YKTSKAAQ--DVWNRADNHFKDTYGFSILDIVINNPVNLT 1673
Query: 74 LSAGG--------RHMKAHKVVLSACSHYFKQLFKEIDG------YQHPVIIL------- 112
+ GG + + +++FKEI+ ++ +L
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 113 PGVEFNDLYALVTF---MYN-------------------GEVNIYQQQLSSLLSMADAL- 149
P AL + GE Y ++L S+AD +
Sbjct: 1734 P--------ALTLMEKAAFEDLKSKGLIPADATFAGHSLGE---Y----AALASLADVMS 1778
Query: 150 --------HIRGLA 155
RG+
Sbjct: 1779 IESLVEVVFYRGMT 1792
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin,
transglutaminase fold, DNA-damage recognition, DNA
repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB:
2qsg_A* 2qsh_A*
Length = 533
Score = 29.9 bits (66), Expect = 0.52
Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 11/88 (12%)
Query: 46 CLRWHNY-----------QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHY 94
CL H + L +P+ + R + L C
Sbjct: 51 CLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMEL 110
Query: 95 FKQLFKEIDGYQHPVIILPGVEFNDLYA 122
+++ +K Y + + + + ++ A
Sbjct: 111 WQKHWKITKKYDNEGLYMRTWKEIEMSA 138
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 28.0 bits (61), Expect = 1.8
Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 3/127 (2%)
Query: 15 HHCLTSSFTSLFTVRSSQSTMDPQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVT- 73
T++ F +++ L + LR HN L L +GE L
Sbjct: 238 EFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEAR 297
Query: 74 --LSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMYNGE 131
L A + + + ++ GY + V F +
Sbjct: 298 KILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPST 357
Query: 132 VNIYQQQ 138
V+ +
Sbjct: 358 VSRLDEN 364
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural
genomics, southeast collaboratory for structural
genomics, secsg; 2.30A {Pyrococcus furiosus}
Length = 395
Score = 27.9 bits (63), Expect = 1.8
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 71 DVTLSAGGRHMKAHKVVLSACSH----YFKQL-FKEIDGYQHPVIIL 112
D+ + G H +VLS + F F + Y+ PVI+L
Sbjct: 138 DIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILL 184
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 27.3 bits (60), Expect = 2.6
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 56 LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGY---QHPVIIL 112
++A P L +T G A +++ + + + I Y +I+
Sbjct: 49 IIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILN 108
Query: 113 PGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMA 146
PG L NG + + SS+L
Sbjct: 109 PGATGGALEFRKILRENGAPEVTIGETSSMLFTC 142
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A
{Aspergillus fumigatus}
Length = 290
Score = 27.2 bits (60), Expect = 3.2
Identities = 7/61 (11%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 49 WHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVL---SACSHYFKQLFKEIDGY 105
+ ++ LP + + +T + ++A + + L + L+ E+
Sbjct: 22 LCPNRGDYVSVLPLVKNNTGVTHIIIAAFHLNEDPGHITLNDDPPDHEMYNPLWAEVPVL 81
Query: 106 Q 106
+
Sbjct: 82 K 82
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Length = 321
Score = 27.1 bits (61), Expect = 3.3
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 142 LLSMADALHIRGLADFT 158
+LSMA L GL F
Sbjct: 126 MLSMARQLRAEGLRSFR 142
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 27.1 bits (59), Expect = 3.4
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 4/106 (3%)
Query: 20 SSFTSLFTVRSSQSTMDPQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVT---LSA 76
S+ F ++S+ P+L LR HN + L +L DGE L + A
Sbjct: 115 SARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGA 174
Query: 77 GGRHMKAHKVVLSACSHYFKQLFK-EIDGYQHPVIILPGVEFNDLY 121
+ + + + + Y V F + +
Sbjct: 175 MVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAF 220
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A
{Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Length = 46
Score = 24.2 bits (53), Expect = 5.8
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 135 YQQQLSSLLSMADALHIRGLADFTGMVSVIIVTSGHV 171
Y+ QL L M G DF V+ + + G V
Sbjct: 7 YEHQLRQLNDM-------GFFDFDRNVAALRRSGGSV 36
>3dgp_B RNA polymerase II transcription factor B subunit; protein-protein
complex, beta-alpha-beta spilt, heterodimer, damage, DNA
excision; 1.80A {Saccharomyces cerevisiae} PDB: 3dom_B
Length = 71
Score = 24.3 bits (53), Expect = 8.0
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 82 KAHKVVLSACSHYFKQLFKEIDGYQHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSS 141
+A K L C K L +ID +++ E +D + LV +V + +L+
Sbjct: 2 RARKGALVQCDPSIKALILQIDAKMSDIVL---EELDDTHLLVN---PSKVEFVKHELNR 55
Query: 142 LLS 144
LLS
Sbjct: 56 LLS 58
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta,
cobalamin biosynthesis, metal-bindin parallel beta
sheet; HET: SIR; 1.90A {Salmonella enterica} PDB:
1qgo_A*
Length = 264
Score = 25.7 bits (56), Expect = 9.0
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 103 DGYQH----PVIILPGVEFNDLYALV 124
GYQ + I+ G E+ + V
Sbjct: 72 QGYQDVAIQSLHIINGDEYEKIVREV 97
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 25.7 bits (56), Expect = 9.1
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 51 NYQTSLLATLPQL--LDGEDLT 70
Y +++ P+L LDG +L
Sbjct: 241 TYISAIRERFPKLLRLDGHELP 262
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 25.5 bits (56), Expect = 9.9
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 46 CLRWHNYQTSLLATLPQL--LDGEDLTD 71
++Y+ S+ LPQL LDG D D
Sbjct: 132 VTNLNDYRESVFKLLPQLTYLDGYDRED 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.138 0.412
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,732,141
Number of extensions: 150211
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 45
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.4 bits)