RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11355
         (177 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 79.0 bits (194), Expect = 3e-20
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 1/111 (0%)

Query: 47  LRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKE-IDGY 105
           +++  + + +L  L +L   + LTDV +       +AHK VL ACS  F  +F + +   
Sbjct: 3   IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 62

Query: 106 QHPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLAD 156
              + + P +       L+ FMY   +N+ +  + ++++ A  L +  + D
Sbjct: 63  LSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 113


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 70.8 bits (173), Expect = 5e-17
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 47  LRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKEIDGYQ 106
           L+  ++ T LL    Q+     L DV +    +   AH+ VL+  S  F+ LF       
Sbjct: 6   LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR----N 61

Query: 107 HPVIILPGVEFNDLYALVTFMYNGEVNIYQQQLSSLLSMADALHIRGLAD 156
                L  +       ++ + Y   +    + L  LL  A+ L I  L +
Sbjct: 62  SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEE 111


>d1odza_ c.1.8.3 (A:) Mannanase A, ManA {Pseudomonas cellulosa
           (Cellvibrio japonicus) [TaxId: 155077]}
          Length = 381

 Score = 30.0 bits (67), Expect = 0.14
 Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 3/78 (3%)

Query: 44  QFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSA--GGRHMKAHKVVLSACSHYFKQLFKE 101
                + N +T     +  +    D T   + +  GG +       L   + +   L  +
Sbjct: 98  TVSSHFDNPKTDTQKGVWPVGTSWDQTPAVVDSLPGGAYNPVLNGYLDQVAEWANNLK-D 156

Query: 102 IDGYQHPVIILPGVEFND 119
             G   PVI     E   
Sbjct: 157 EQGRLIPVIFRLYHENTG 174


>d1dcea2 b.7.4.1 (A:242-350) Rab geranylgeranyltransferase
          alpha-subunit, insert domain {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 109

 Score = 26.4 bits (58), Expect = 1.1
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 17 CLTSSFTSLFTVRSSQSTMDPQLDGSQQFCLRWHN 51
          CL+  F+   TV S   T+   +D +    + W  
Sbjct: 15 CLSVCFSRPLTVGSRMGTLLLMVDEAPLS-VEWRT 48


>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 42

 Score = 23.9 bits (52), Expect = 2.4
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 91  CSHYFKQLFKE 101
           C  +F QLFK 
Sbjct: 23  CKPHFNQLFKS 33


>d2v3ga1 c.1.8.3 (A:8-280) Endoglucanase H N-terminal domain
           {Clostridium thermocellum [TaxId: 1515]}
          Length = 273

 Score = 25.3 bits (55), Expect = 4.0
 Identities = 5/26 (19%), Positives = 12/26 (46%)

Query: 94  YFKQLFKEIDGYQHPVIILPGVEFND 119
           Y  ++ +++  Y   + + P  E N 
Sbjct: 80  YITRMAQDMKAYGKEIWLRPLHEANG 105


>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
           aries) [TaxId: 9940]}
          Length = 511

 Score = 24.9 bits (54), Expect = 7.1
 Identities = 13/55 (23%), Positives = 15/55 (27%)

Query: 15  HHCLTSSFTSLFTVRSSQSTMDPQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDL 69
           H+       S   V      + P L       LR HN    LL         E L
Sbjct: 201 HYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQL 255


>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 511

 Score = 24.9 bits (54), Expect = 7.2
 Identities = 10/44 (22%), Positives = 12/44 (27%)

Query: 26  FTVRSSQSTMDPQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDL 69
           F V      + P L       LR H     +L         E L
Sbjct: 213 FAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQL 256


>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 113

 Score = 23.7 bits (51), Expect = 8.9
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 11 QLVHHHCLTSSFTSLFTVRSSQSTMDPQLD 40
             HHH  +S  + +       +TM+   D
Sbjct: 4  SSHHHHHHSSGASLVPRGSEGAATMELSAD 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 656,083
Number of extensions: 27739
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 15
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.5 bits)