BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11356
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 19 TQMDYKTYLDFVLSLENKHEP-QALQYLFRFLDIKHQGYLDTFTLFYFFKI 68
++D+K +++ V K + Q L++ FR D+ GY+ LF K+
Sbjct: 68 GEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM 118
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 19 TQMDYKTYLDFVLSLENKHEP-QALQYLFRFLDIKHQGYLDTFTLFYFFKI 68
++D+K +++ V K + Q L++ FR D+ GY+ LF K+
Sbjct: 67 GEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM 117
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 19 TQMDYKTYLDFVLSLENKHEP-QALQYLFRFLDIKHQGYLDTFTLFYFFKI 68
++D+K +++ V K + Q L++ FR D+ GY+ LF K+
Sbjct: 53 GEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM 103
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 19 TQMDYKTYLDFVLSLENKHEP-QALQYLFRFLDIKHQGYLDTFTLFYFFKI 68
++D+K +++ V K + Q L++ FR D+ GY+ LF K+
Sbjct: 54 GEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM 104
>pdb|1OMD|A Chain A, Structure Of Oncomodulin Refined At 1.85 Angstroms
Resolution. An Example Of Extensive Molecular
Aggregation Via Ca2+
pdb|1RRO|A Chain A, Refinement Of Recombinant Oncomodulin At 1.30 Angstroms
Resolution
pdb|2NLN|A Chain A, Solution Structure Of Calcium-Free Rat Beta-Parvalbumin
Length = 108
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 11 LTECL---TFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67
L EC TFE Q ++T S +K ++ +FRF+D GYLD L YF +
Sbjct: 15 LQECQDPDTFEPQKFFQT------SGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQ 68
>pdb|3HS3|A Chain A, Crystal Structure Of Periplasmic Binding Ribose Operon
Repressor Protein From Lactobacillus Acidophilus
pdb|3HS3|B Chain B, Crystal Structure Of Periplasmic Binding Ribose Operon
Repressor Protein From Lactobacillus Acidophilus
Length = 277
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 5 IVTKELLTECLTFETQMDYKTYLDFVLSLENKH 37
++ KE T ++F T D K Y + +++ EN +
Sbjct: 35 VIQKEGYTALISFSTNSDVKKYQNAIINFENNN 67
>pdb|1TTX|A Chain A, Solution Stucture Of Human Beta Parvalbumin
(Oncomodulin) Refined With A Paramagnetism Based
Strategy
Length = 109
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 11 LTECL---TFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67
L EC TFE Q ++T S +K ++ +FRF+D GYLD L +F +
Sbjct: 16 LQECRDPDTFEPQKFFQT------SGLSKMSANQVKDVFRFIDNDQSGYLDEEELKFFLQ 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.143 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,924,427
Number of Sequences: 62578
Number of extensions: 57794
Number of successful extensions: 155
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 7
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)