BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11356
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JK24|P2R3C_MOUSE Serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit gamma OS=Mus musculus GN=Ppp2r3c PE=1 SV=2
Length = 453
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 49/55 (89%)
Query: 13 ECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67
ECLT++ +MDYKTYLDFVL+LEN+ EP ALQY+F+ LDI+++GYL+ F+L YFF+
Sbjct: 317 ECLTYDGEMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFR 371
>sp|Q6AXZ3|P2R3C_RAT Serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit gamma OS=Rattus norvegicus GN=Ppp2r3c PE=2 SV=1
Length = 453
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 49/55 (89%)
Query: 13 ECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67
ECLT++ +MDYKTYLDFVL+LEN+ EP ALQY+F+ LDI+++GYL+ F+L YFF+
Sbjct: 317 ECLTYDGEMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFR 371
>sp|Q969Q6|P2R3C_HUMAN Serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit gamma OS=Homo sapiens GN=PPP2R3C PE=1 SV=1
Length = 453
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 49/55 (89%)
Query: 13 ECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67
ECLT++ +MDYKTYLDFVL+LEN+ EP ALQY+F+ LDI+++GYL+ F+L YFF+
Sbjct: 317 ECLTYDGEMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFR 371
>sp|Q5E9G1|P2R3C_BOVIN Serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit gamma OS=Bos taurus GN=PPP2R3C PE=2 SV=1
Length = 453
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 49/55 (89%)
Query: 13 ECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67
ECLT++ +MDYKTYLDFVL+LEN+ EP ALQY+F+ LDI+++GYL+ F+L YFF+
Sbjct: 317 ECLTYDGEMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFR 371
>sp|Q803V3|P2R3C_DANRE Serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit gamma OS=Danio rerio GN=ppp2r3c PE=2 SV=1
Length = 457
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%)
Query: 3 CSIVTKELLTECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTL 62
S+ + CLT++ +MDYKTYLDFVL+LEN+ EP ALQY+F+ LD++++GYL+ F L
Sbjct: 310 TSVFLDRVYQACLTYDGEMDYKTYLDFVLALENRKEPAALQYIFKLLDMENKGYLNVFAL 369
Query: 63 FYFFK 67
YFF+
Sbjct: 370 NYFFR 374
>sp|Q6DJ05|P2R3C_XENTR Serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit gamma OS=Xenopus tropicalis GN=ppp2r3c PE=2 SV=1
Length = 448
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 48/55 (87%)
Query: 13 ECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67
ECLT++ +MDYKTYLDFVL+LEN+ EP ALQY+F+ LDI+++G L+ F+L +FF+
Sbjct: 312 ECLTYDGEMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGSLNVFSLNFFFR 366
>sp|Q9FEE2|TON2_ARATH Probable serine/threonine-protein phosphatase 2A regulatory subunit
B'' subunit TON2 OS=Arabidopsis thaliana GN=TON2 PE=1
SV=1
Length = 480
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 20 QMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67
+MD+ ++LDFVL+LENK P+ L YLFR LD++ +G+L T + F+
Sbjct: 352 EMDFDSFLDFVLALENKDTPEGLTYLFRCLDLQGRGFLTTADIHSLFR 399
>sp|Q06190|P2R3A_HUMAN Serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit alpha OS=Homo sapiens GN=PPP2R3A PE=1 SV=1
Length = 1150
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 18 ETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67
E +M Y ++ F++S E+K P +++Y FR +D+ G L + L YF++
Sbjct: 953 EGRMSYADFVWFLISEEDKRNPTSIEYWFRCMDVDGDGVLSMYELEYFYE 1002
>sp|Q9Y5P8|P2R3B_HUMAN Serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit beta OS=Homo sapiens GN=PPP2R3B PE=1 SV=2
Length = 575
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 18 ETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67
E ++ Y ++ F++S E+K P +++Y FR +D+ G L F L YF++
Sbjct: 369 EGKISYADFVWFLISEEDKKTPTSIEYWFRCMDLDGDGALSMFELEYFYE 418
>sp|Q9Z176|P2R3A_MOUSE Serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit alpha OS=Mus musculus GN=Ppp2r3a PE=2 SV=1
Length = 491
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 20 QMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67
++ Y ++ F+LS E+K P + +Y FR +D+ G L F L +F++
Sbjct: 314 KLSYADFVWFLLSEEDKTTPTSTEYWFRCMDLDGDGALSMFELEFFYE 361
>sp|Q8VEG4|EXD2_MOUSE Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus
GN=Exd2 PE=2 SV=1
Length = 496
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 5 IVTKELLTECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDT 59
I+T+E+L E + ET++ ++Y+ L + +H L+ L + Q +LD+
Sbjct: 410 IITEEMLHEAASLETRIYNESYIPHGLKVVQRHTEGGLRSLMQLESRWRQHFLDS 464
>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens
GN=EXD2 PE=1 SV=2
Length = 621
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 IVTKELLTECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDT 59
+VT+E+L E + ET++ + Y+ L + H L+ L + Q +LD+
Sbjct: 535 VVTEEMLQEAASLETRISNENYVPHGLKVVQCHSQGGLRSLMQLESRWRQHFLDS 589
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.143 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,813,488
Number of Sequences: 539616
Number of extensions: 714135
Number of successful extensions: 2135
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2123
Number of HSP's gapped (non-prelim): 12
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)