Query psy11356
Match_columns 70
No_of_seqs 102 out of 176
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 16:17:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2562|consensus 99.9 1.5E-27 3.3E-32 180.7 3.7 67 2-69 308-380 (493)
2 KOG0034|consensus 98.9 2.8E-09 6E-14 73.3 6.2 64 2-65 63-129 (187)
3 COG5126 FRQ1 Ca2+-binding prot 98.8 1.7E-08 3.7E-13 68.3 7.2 65 2-66 53-118 (160)
4 KOG0044|consensus 98.8 1.5E-08 3.2E-13 70.2 5.4 66 2-67 61-127 (193)
5 PF13499 EF-hand_7: EF-hand do 98.6 6.8E-08 1.5E-12 54.3 3.9 60 7-66 2-66 (66)
6 PTZ00184 calmodulin; Provision 98.4 2.8E-06 6.1E-11 52.6 7.2 63 5-67 47-111 (149)
7 KOG0027|consensus 98.4 1.7E-06 3.8E-11 56.0 6.3 62 6-67 45-112 (151)
8 PLN02964 phosphatidylserine de 98.2 5.3E-06 1.2E-10 65.8 6.9 64 5-68 179-243 (644)
9 PF13833 EF-hand_8: EF-hand do 98.2 7.8E-06 1.7E-10 44.4 5.3 51 18-68 2-53 (54)
10 cd00051 EFh EF-hand, calcium b 98.1 2.6E-05 5.6E-10 40.8 7.0 60 7-66 2-62 (63)
11 PTZ00183 centrin; Provisional 98.1 1.6E-05 3.6E-10 50.0 7.0 63 5-67 53-117 (158)
12 PF13202 EF-hand_5: EF hand; P 97.9 1.9E-05 4.1E-10 38.2 3.0 24 42-65 1-24 (25)
13 PF00036 EF-hand_1: EF hand; 97.8 2.7E-05 5.9E-10 38.9 3.0 26 42-67 2-27 (29)
14 PF13405 EF-hand_6: EF-hand do 97.8 3.3E-05 7.2E-10 38.3 3.1 26 42-67 2-27 (31)
15 KOG0038|consensus 97.8 2.4E-05 5.1E-10 53.7 3.2 61 4-64 70-132 (189)
16 PTZ00183 centrin; Provisional 97.7 0.00019 4.2E-09 45.0 6.8 63 6-68 91-154 (158)
17 PF13499 EF-hand_7: EF-hand do 97.5 0.00014 3E-09 40.5 3.2 28 41-68 1-28 (66)
18 PTZ00184 calmodulin; Provision 97.3 0.0015 3.3E-08 40.3 6.5 59 7-65 13-72 (149)
19 cd00052 EH Eps15 homology doma 96.9 0.0073 1.6E-07 33.0 6.2 57 8-66 2-59 (67)
20 cd00252 SPARC_EC SPARC_EC; ext 96.9 0.0012 2.6E-08 42.3 3.2 28 39-66 47-74 (116)
21 cd05027 S-100B S-100B: S-100B 96.9 0.0062 1.4E-07 36.9 6.2 58 7-64 10-75 (88)
22 cd05030 calgranulins Calgranul 96.8 0.0044 9.5E-08 37.2 5.4 61 7-67 10-78 (88)
23 KOG0028|consensus 96.7 0.0045 9.8E-08 42.5 5.2 47 18-64 83-130 (172)
24 cd05029 S-100A6 S-100A6: S-100 96.7 0.0079 1.7E-07 36.4 5.8 58 8-65 13-76 (88)
25 smart00054 EFh EF-hand, calciu 96.6 0.0038 8.2E-08 27.8 3.1 27 42-68 2-28 (29)
26 cd05031 S-100A10_like S-100A10 96.6 0.014 3E-07 35.1 6.1 59 7-65 10-76 (94)
27 smart00027 EH Eps15 homology d 96.4 0.025 5.3E-07 34.0 6.6 58 7-66 12-70 (96)
28 cd05025 S-100A1 S-100A1: S-100 96.4 0.017 3.7E-07 34.4 5.9 60 7-66 11-78 (92)
29 cd05022 S-100A13 S-100A13: S-1 96.4 0.014 3.1E-07 35.6 5.4 56 7-62 10-69 (89)
30 cd05023 S-100A11 S-100A11: S-1 96.4 0.017 3.6E-07 35.1 5.6 58 7-64 11-76 (89)
31 cd00213 S-100 S-100: S-100 dom 96.3 0.029 6.4E-07 32.9 6.2 60 7-66 10-77 (88)
32 KOG0027|consensus 96.2 0.024 5.1E-07 36.5 6.1 55 7-61 87-142 (151)
33 KOG0036|consensus 96.1 0.016 3.6E-07 44.8 5.8 57 7-68 53-110 (463)
34 cd00252 SPARC_EC SPARC_EC; ext 96.1 0.032 6.9E-07 35.7 6.2 55 8-66 51-106 (116)
35 PF14788 EF-hand_10: EF hand; 96.0 0.026 5.7E-07 31.8 4.8 49 20-68 1-49 (51)
36 cd00052 EH Eps15 homology doma 95.9 0.0073 1.6E-07 33.0 2.3 25 44-68 3-27 (67)
37 cd05026 S-100Z S-100Z: S-100Z 95.9 0.043 9.3E-07 33.2 5.8 60 7-66 12-79 (93)
38 COG5126 FRQ1 Ca2+-binding prot 95.8 0.055 1.2E-06 36.7 6.5 50 17-66 105-154 (160)
39 KOG0031|consensus 95.8 0.007 1.5E-07 41.5 2.2 39 30-68 22-60 (171)
40 cd05024 S-100A10 S-100A10: A s 95.8 0.052 1.1E-06 33.7 5.8 54 9-62 12-70 (91)
41 PF10591 SPARC_Ca_bdg: Secrete 95.7 0.01 2.2E-07 37.7 2.5 34 34-67 48-81 (113)
42 PRK12309 transaldolase/EF-hand 95.7 0.029 6.2E-07 42.5 5.3 49 7-68 336-385 (391)
43 smart00027 EH Eps15 homology d 95.2 0.028 6.1E-07 33.8 3.3 30 39-68 9-38 (96)
44 KOG4666|consensus 95.1 0.027 5.9E-07 42.8 3.6 49 18-66 273-322 (412)
45 KOG0044|consensus 95.0 0.069 1.5E-06 37.1 5.2 52 17-68 113-175 (193)
46 KOG4223|consensus 94.9 0.08 1.7E-06 39.6 5.5 50 15-64 211-265 (325)
47 cd05025 S-100A1 S-100A1: S-100 94.8 0.038 8.2E-07 32.9 3.0 30 39-68 8-39 (92)
48 PF12763 EF-hand_4: Cytoskelet 94.7 0.17 3.7E-06 31.7 5.9 53 8-62 13-65 (104)
49 PF00036 EF-hand_1: EF hand; 94.5 0.055 1.2E-06 26.7 2.6 26 7-32 2-28 (29)
50 cd05031 S-100A10_like S-100A10 94.2 0.065 1.4E-06 32.1 3.1 30 39-68 7-38 (94)
51 cd00213 S-100 S-100: S-100 dom 94.2 0.059 1.3E-06 31.6 2.8 29 40-68 8-38 (88)
52 PF08726 EFhand_Ca_insen: Ca2+ 93.9 0.11 2.4E-06 30.8 3.5 29 35-64 1-29 (69)
53 cd05024 S-100A10 S-100A10: A s 93.7 0.11 2.4E-06 32.2 3.5 31 3-33 46-77 (91)
54 KOG2643|consensus 93.5 0.04 8.6E-07 43.0 1.5 46 18-65 213-258 (489)
55 cd00051 EFh EF-hand, calcium b 93.2 0.13 2.8E-06 26.2 2.8 26 42-67 2-27 (63)
56 cd05027 S-100B S-100B: S-100B 92.6 0.2 4.4E-06 30.2 3.4 30 39-68 7-38 (88)
57 cd05022 S-100A13 S-100A13: S-1 92.5 0.19 4.1E-06 30.6 3.2 29 40-68 8-37 (89)
58 PRK12309 transaldolase/EF-hand 91.9 0.3 6.6E-06 37.0 4.3 27 37-63 331-357 (391)
59 KOG4347|consensus 91.6 0.22 4.8E-06 40.3 3.5 58 3-61 553-611 (671)
60 cd05023 S-100A11 S-100A11: S-1 91.5 0.36 7.8E-06 29.2 3.7 30 4-33 51-81 (89)
61 cd05026 S-100Z S-100Z: S-100Z 91.0 0.33 7.2E-06 29.2 3.1 29 40-68 10-40 (93)
62 PF13833 EF-hand_8: EF-hand do 90.4 0.45 9.7E-06 25.2 3.0 29 3-31 23-52 (54)
63 PF00404 Dockerin_1: Dockerin 89.9 0.21 4.4E-06 23.4 1.2 15 50-64 1-15 (21)
64 KOG0031|consensus 89.1 1.3 2.9E-05 30.5 5.1 48 18-65 78-126 (171)
65 KOG2562|consensus 89.1 0.64 1.4E-05 36.5 4.0 66 4-69 224-307 (493)
66 cd05029 S-100A6 S-100A6: S-100 88.6 0.79 1.7E-05 27.6 3.4 31 3-33 49-80 (88)
67 PF09279 EF-hand_like: Phospho 87.7 2.2 4.9E-05 24.6 4.9 60 7-66 2-67 (83)
68 KOG4223|consensus 87.5 1.2 2.5E-05 33.5 4.4 53 9-61 167-221 (325)
69 KOG0034|consensus 87.1 3.5 7.6E-05 28.4 6.3 52 17-68 117-175 (187)
70 KOG3866|consensus 86.8 0.28 6E-06 37.4 0.8 25 43-67 247-271 (442)
71 KOG0036|consensus 86.0 3.1 6.8E-05 32.5 6.1 60 7-66 16-77 (463)
72 KOG0037|consensus 85.6 2.7 5.8E-05 30.1 5.2 52 3-60 158-210 (221)
73 cd05030 calgranulins Calgranul 84.8 1.8 3.8E-05 25.8 3.5 30 4-33 50-80 (88)
74 PF10591 SPARC_Ca_bdg: Secrete 82.0 0.77 1.7E-05 29.0 1.1 44 17-62 67-110 (113)
75 PF14658 EF-hand_9: EF-hand do 78.9 8.2 0.00018 22.6 4.8 54 9-62 2-58 (66)
76 PLN02964 phosphatidylserine de 78.3 9 0.0002 31.1 6.3 55 8-67 146-206 (644)
77 KOG4065|consensus 76.5 2.4 5.1E-05 28.3 2.2 29 35-63 61-90 (144)
78 KOG0030|consensus 75.9 12 0.00026 25.4 5.4 46 19-64 64-112 (152)
79 KOG0040|consensus 74.1 7.8 0.00017 35.2 5.1 47 15-62 2307-2355(2399)
80 KOG1707|consensus 74.0 2.8 6.1E-05 33.9 2.4 27 40-66 195-221 (625)
81 KOG4251|consensus 73.7 2.3 5E-05 31.7 1.8 32 37-68 98-129 (362)
82 PLN02952 phosphoinositide phos 72.2 11 0.00023 30.4 5.3 50 18-68 14-65 (599)
83 PF09069 EF-hand_3: EF-hand; 69.2 7.8 0.00017 23.9 3.1 28 40-68 3-30 (90)
84 KOG0030|consensus 68.2 6.6 0.00014 26.6 2.9 26 7-32 126-151 (152)
85 KOG3555|consensus 67.8 4.3 9.3E-05 31.4 2.1 29 40-68 250-278 (434)
86 KOG1955|consensus 64.1 4.7 0.0001 32.7 1.7 24 39-62 264-287 (737)
87 KOG0377|consensus 63.4 8.4 0.00018 30.8 3.0 49 18-66 513-573 (631)
88 PF02761 Cbl_N2: CBL proto-onc 60.3 38 0.00082 20.9 5.2 45 20-67 22-69 (85)
89 KOG0041|consensus 59.7 6.4 0.00014 28.4 1.7 32 36-67 95-126 (244)
90 PF05042 Caleosin: Caleosin re 59.6 56 0.0012 22.6 6.4 63 6-68 97-166 (174)
91 PF05476 PET122: PET122; Inte 57.6 7.8 0.00017 28.5 1.8 41 6-47 13-67 (267)
92 PF05383 La: La domain; Inter 57.2 13 0.00027 21.1 2.3 38 27-67 5-42 (61)
93 KOG0377|consensus 57.0 53 0.0012 26.5 6.4 47 18-64 561-611 (631)
94 KOG0028|consensus 53.7 51 0.0011 22.8 5.2 46 18-63 47-92 (172)
95 PRK13704 plasmid SOS inhibitio 53.6 14 0.0003 26.8 2.6 23 41-65 40-62 (240)
96 cd08032 LARP_7 La RNA-binding 52.8 20 0.00043 21.7 2.8 38 27-67 13-50 (82)
97 PF05901 Excalibur: Excalibur 50.5 7.3 0.00016 20.0 0.6 8 49-56 27-34 (37)
98 KOG0038|consensus 50.5 24 0.00052 24.5 3.2 29 4-32 148-177 (189)
99 PF06952 PsiA: PsiA protein; 49.1 15 0.00032 26.6 2.1 23 41-65 40-62 (238)
100 KOG2643|consensus 48.8 4.8 0.0001 31.7 -0.4 23 41-63 426-448 (489)
101 KOG2557|consensus 48.6 37 0.0008 26.4 4.3 51 19-69 73-123 (427)
102 PF08337 Plexin_cytopl: Plexin 48.5 19 0.00041 28.8 2.8 38 25-62 371-410 (539)
103 PF01839 FG-GAP: FG-GAP repeat 46.5 8.9 0.00019 19.3 0.5 9 49-57 8-16 (34)
104 PF01287 eIF-5a: Eukaryotic el 45.7 2.7 5.9E-05 24.7 -1.7 15 47-61 8-22 (69)
105 PF09068 EF-hand_2: EF hand; 43.0 31 0.00068 22.1 2.8 57 7-63 43-120 (127)
106 KOG4251|consensus 41.8 20 0.00043 26.8 1.9 57 7-63 103-163 (362)
107 cd08033 LARP_6 La RNA-binding 41.4 37 0.00079 20.3 2.7 38 27-67 8-45 (77)
108 KOG0037|consensus 41.3 1.2E+02 0.0025 21.8 5.6 41 18-64 108-148 (221)
109 cd07323 LAM LA motif RNA-bindi 39.9 30 0.00065 20.3 2.2 36 27-67 8-43 (75)
110 KOG3719|consensus 38.7 6.3 0.00014 31.9 -1.2 23 43-66 225-247 (638)
111 KOG4347|consensus 36.8 30 0.00065 28.5 2.3 23 40-62 555-577 (671)
112 KOG4403|consensus 36.8 24 0.00053 28.1 1.8 37 34-70 62-98 (575)
113 KOG1029|consensus 36.6 15 0.00033 31.3 0.7 22 40-61 229-250 (1118)
114 TIGR01894 cas_TM1795_cmr1 CRIS 36.3 23 0.0005 23.6 1.4 12 39-50 26-37 (153)
115 PHA03379 EBNA-3A; Provisional 36.1 39 0.00085 28.4 2.9 34 10-47 262-295 (935)
116 KOG0039|consensus 35.8 48 0.001 26.7 3.3 39 21-65 4-42 (646)
117 PHA03378 EBNA-3B; Provisional 35.6 40 0.00086 28.5 2.8 24 20-47 278-301 (991)
118 PF06226 DUF1007: Protein of u 35.4 19 0.00042 24.7 0.9 21 48-68 58-78 (212)
119 cd01205 WASP WASP-type EVH1 do 35.0 4.5 9.7E-05 25.7 -2.1 20 43-62 42-61 (105)
120 PF13181 TPR_8: Tetratricopept 33.4 41 0.00088 15.4 1.7 19 36-54 15-33 (34)
121 PF12862 Apc5: Anaphase-promot 33.1 50 0.0011 19.4 2.4 31 26-56 2-32 (94)
122 KOG1707|consensus 31.8 46 0.001 27.2 2.6 27 42-68 317-343 (625)
123 cd08028 LARP_3 La RNA-binding 31.5 56 0.0012 19.7 2.4 37 27-67 12-48 (82)
124 PF12226 Astro_capsid_p: Turke 30.5 7.9 0.00017 27.4 -1.6 14 44-57 60-73 (230)
125 KOG0751|consensus 29.1 2.2E+02 0.0047 23.5 5.9 56 9-67 77-135 (694)
126 cd08031 LARP_4_5_like La RNA-b 29.1 77 0.0017 18.8 2.7 36 27-67 8-43 (75)
127 PLN02228 Phosphoinositide phos 28.2 2.7E+02 0.0058 22.5 6.3 62 4-66 23-90 (567)
128 smart00684 DM15 Tandem repeat 28.0 72 0.0016 16.7 2.2 27 23-49 7-33 (39)
129 PF05042 Caleosin: Caleosin re 27.0 1.3E+02 0.0028 20.8 3.8 36 34-69 90-125 (174)
130 KOG1954|consensus 26.7 39 0.00085 26.8 1.4 23 40-62 477-499 (532)
131 cd04469 S1_Hex1 S1_Hex1: Hex1, 26.6 12 0.00026 22.4 -1.1 13 46-59 5-17 (75)
132 PHA03377 EBNA-3C; Provisional 26.5 75 0.0016 27.1 3.0 26 18-47 282-307 (1000)
133 cd08029 LA_like_fungal La-moti 26.2 75 0.0016 18.8 2.3 38 27-67 8-45 (76)
134 PF05009 EBV-NA3: Epstein-Barr 25.4 19 0.00042 26.3 -0.4 29 15-47 130-158 (255)
135 PF12256 TcdB_toxin_midN: Inse 25.2 23 0.00049 23.4 -0.1 13 46-58 27-39 (175)
136 smart00389 HOX Homeodomain. DN 24.6 1.1E+02 0.0024 15.6 2.9 36 6-47 14-49 (56)
137 KOG0169|consensus 24.5 2.2E+02 0.0048 24.0 5.3 58 7-68 174-232 (746)
138 cd00086 homeodomain Homeodomai 23.8 1.2E+02 0.0026 15.5 3.0 36 6-47 14-49 (59)
139 PF07483 W_rich_C: Tryptophan- 22.9 36 0.00077 21.7 0.5 18 39-57 91-108 (109)
140 cd04440 DEP_2_P-Rex DEP (Dishe 22.8 1.6E+02 0.0034 18.2 3.4 34 18-51 35-69 (93)
141 cd08030 LA_like_plant La-motif 22.7 93 0.002 19.1 2.3 38 27-67 9-46 (90)
142 cd00078 HECTc HECT domain; C-t 22.1 1.6E+02 0.0034 21.4 3.8 43 19-66 240-283 (352)
143 KOG0169|consensus 22.0 2.2E+02 0.0047 24.0 4.8 63 6-68 137-200 (746)
144 COG1439 Predicted nucleic acid 21.7 1.4E+02 0.0031 20.6 3.3 28 36-63 61-89 (177)
145 PF13517 VCBS: Repeat domain i 21.6 38 0.00081 18.0 0.4 12 47-58 47-58 (61)
146 cd08037 LARP_1 La RNA-binding 21.2 1.3E+02 0.0029 17.7 2.7 36 27-67 8-43 (73)
147 KOG3434|consensus 20.7 64 0.0014 21.3 1.3 16 53-68 29-44 (125)
148 PF15017 AF1Q: Drug resistance 20.4 53 0.0012 20.3 0.9 15 50-64 69-83 (87)
149 TIGR03036 trp_2_3_diox tryptop 20.1 2.1E+02 0.0046 20.9 4.0 33 17-49 2-47 (264)
No 1
>KOG2562|consensus
Probab=99.94 E-value=1.5e-27 Score=180.70 Aligned_cols=67 Identities=33% Similarity=0.655 Sum_probs=62.8
Q ss_pred cchhhHHHHHhhccC------CCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhhcc
Q psy11356 2 SCSIVTKELLTECLT------FETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKID 69 (70)
Q Consensus 2 ~t~~~i~RiF~~~~~------~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~~ 69 (70)
.|.+||||||+ +++ .+|+|||++|||||+|+|+|++|+||+|||||||+||||+||..||++||++|
T Consensus 308 lt~~ivdRIFs-~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq 380 (493)
T KOG2562|consen 308 LTERIVDRIFS-QVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQ 380 (493)
T ss_pred hhhHHHHHHHh-hccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHH
Confidence 47899999999 444 36999999999999999999999999999999999999999999999999997
No 2
>KOG0034|consensus
Probab=98.93 E-value=2.8e-09 Score=73.30 Aligned_cols=64 Identities=14% Similarity=0.335 Sum_probs=56.1
Q ss_pred cchhhHHHHHhhccC-CCCc-ccHHHHHHHHhhhcCCCChH-HHHHHHHHhccCCCCeecHHHHHhh
Q psy11356 2 SCSIVTKELLTECLT-FETQ-MDYKTYLDFVLSLENKHEPQ-ALQYLFRFLDIKHQGYLDTFTLFYF 65 (70)
Q Consensus 2 ~t~~~i~RiF~~~~~-~~g~-mdy~~Fv~fvla~e~k~~~~-sl~y~FrilD~dgdG~Ls~~eL~~F 65 (70)
+.|++.+||+...-+ .+|. ++|++|+..+.....++.+. .++|.||++|++++|+|++.|+..-
T Consensus 63 ~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~i 129 (187)
T KOG0034|consen 63 ALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQI 129 (187)
T ss_pred hcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHH
Confidence 458899999998854 4565 99999999999999998866 9999999999999999999998653
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.84 E-value=1.7e-08 Score=68.26 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=56.7
Q ss_pred cchhhHHHHHhhccCCCCcccHHHHHHHHhhhcCC-CChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 2 SCSIVTKELLTECLTFETQMDYKTYLDFVLSLENK-HEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 2 ~t~~~i~RiF~~~~~~~g~mdy~~Fv~fvla~e~k-~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
++...+.++|+.....++.|||.+|+.++--...+ ..++.+++.|+++|.|+||+|+..+|.+--
T Consensus 53 ~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl 118 (160)
T COG5126 53 PSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVL 118 (160)
T ss_pred CcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHH
Confidence 56788999999987655799999999999888644 568999999999999999999999997643
No 4
>KOG0044|consensus
Probab=98.77 E-value=1.5e-08 Score=70.16 Aligned_cols=66 Identities=12% Similarity=0.257 Sum_probs=56.4
Q ss_pred cchhhHHHHHhhcc-CCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 2 SCSIVTKELLTECL-TFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 2 ~t~~~i~RiF~~~~-~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
.+..+.+|||+..- ..+|.++|++||..+......+..+.++|.|+++|+||||+||..|+-..-+
T Consensus 61 d~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~ 127 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQ 127 (193)
T ss_pred CHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHH
Confidence 34568899999884 4679999999988887777778899999999999999999999999876544
No 5
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.60 E-value=6.8e-08 Score=54.27 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=50.5
Q ss_pred HHHHHhhc-cCCCCcccHHHHHHHHhhhcCC----CChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 7 TKELLTEC-LTFETQMDYKTYLDFVLSLENK----HEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 7 i~RiF~~~-~~~~g~mdy~~Fv~fvla~e~k----~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
+.++|... ...+|.++.+++...+-..... .....++.+|+.+|.|+||.||..|...++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 56788877 4467999999999999988743 345788999999999999999999988764
No 6
>PTZ00184 calmodulin; Provisional
Probab=98.36 E-value=2.8e-06 Score=52.64 Aligned_cols=63 Identities=11% Similarity=0.280 Sum_probs=50.9
Q ss_pred hhHHHHHhhc-cCCCCcccHHHHHHHHhhhcC-CCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 5 IVTKELLTEC-LTFETQMDYKTYLDFVLSLEN-KHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 5 ~~i~RiF~~~-~~~~g~mdy~~Fv~fvla~e~-k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
.-+.++|... .+.+|.++|++|+..+...-. ......++-+|+.+|.+|+|+|+..++..+.+
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~ 111 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMT 111 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHH
Confidence 3567788866 345689999999999887633 34567889999999999999999999987764
No 7
>KOG0027|consensus
Probab=98.36 E-value=1.7e-06 Score=56.00 Aligned_cols=62 Identities=21% Similarity=0.428 Sum_probs=49.4
Q ss_pred hHHHHHhhc-cCCCCcccHHHHHHHHhhhcCCCC-----hHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 6 VTKELLTEC-LTFETQMDYKTYLDFVLSLENKHE-----PQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 6 ~i~RiF~~~-~~~~g~mdy~~Fv~fvla~e~k~~-----~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
=+..+++.. ...+|.+++.+|+..+.......+ ...++=.||++|.||+|+||..||.....
T Consensus 45 el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~ 112 (151)
T KOG0027|consen 45 ELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLT 112 (151)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHH
Confidence 355666655 335799999999999987755433 34899999999999999999999988754
No 8
>PLN02964 phosphatidylserine decarboxylase
Probab=98.19 E-value=5.3e-06 Score=65.84 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=54.5
Q ss_pred hhHHHHHhhcc-CCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 5 IVTKELLTECL-TFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 5 ~~i~RiF~~~~-~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
.+++++|+..- ..+|.|+|++|+.++.......+.+.++..|+++|.|++|+||..||..-.+.
T Consensus 179 ~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 179 SFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 36889999763 35689999999999998766677788999999999999999999999876543
No 9
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.16 E-value=7.8e-06 Score=44.44 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=44.4
Q ss_pred CCcccHHHHHHHHhhhcCC-CChHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 18 ETQMDYKTYLDFVLSLENK-HEPQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 18 ~g~mdy~~Fv~fvla~e~k-~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
+|.|+.++|..++....-+ -+++.++-.|+.+|.|++|+|+-.|.-.+++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 5899999999999665556 77888999999999999999999998877654
No 10
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.14 E-value=2.6e-05 Score=40.79 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=50.2
Q ss_pred HHHHHhhc-cCCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 7 TKELLTEC-LTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 7 i~RiF~~~-~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
+.++|..+ ...+|.+++++|...+-+.-...+.+.++-+|+.+|.+++|.|+..+...+.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 45677766 3456999999999998887766778888999999999999999999987764
No 11
>PTZ00183 centrin; Provisional
Probab=98.13 E-value=1.6e-05 Score=49.96 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=48.4
Q ss_pred hhHHHHHhhcc-CCCCcccHHHHHHHHhhh-cCCCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 5 IVTKELLTECL-TFETQMDYKTYLDFVLSL-ENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 5 ~~i~RiF~~~~-~~~g~mdy~~Fv~fvla~-e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
..+..+|.... ..+|.++|++|+..+... ..+...+.++-.|+.+|.+++|+|+..|+..+..
T Consensus 53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 34667777653 356899999999877654 3445567899999999999999999999887754
No 12
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.88 E-value=1.9e-05 Score=38.19 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.4
Q ss_pred HHHHHHHhccCCCCeecHHHHHhh
Q psy11356 42 LQYLFRFLDIKHQGYLDTFTLFYF 65 (70)
Q Consensus 42 l~y~FrilD~dgdG~Ls~~eL~~F 65 (70)
|+-+|+.+|.|+||.||..|+..|
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456899999999999999999865
No 13
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.81 E-value=2.7e-05 Score=38.90 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.1
Q ss_pred HHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 42 LQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 42 l~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
++-+|+.+|.||||+||..|+....+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 57899999999999999999987654
No 14
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.78 E-value=3.3e-05 Score=38.31 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.9
Q ss_pred HHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 42 LQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 42 l~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
++.+|+.+|.|++|+||..|+....+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 67899999999999999999998765
No 15
>KOG0038|consensus
Probab=97.78 E-value=2.4e-05 Score=53.65 Aligned_cols=61 Identities=10% Similarity=0.199 Sum_probs=48.7
Q ss_pred hhhHHHHHhhccC-CCCcccHHHHHHHHhhhcCC-CChHHHHHHHHHhccCCCCeecHHHHHh
Q psy11356 4 SIVTKELLTECLT-FETQMDYKTYLDFVLSLENK-HEPQALQYLFRFLDIKHQGYLDTFTLFY 64 (70)
Q Consensus 4 ~~~i~RiF~~~~~-~~g~mdy~~Fv~fvla~e~k-~~~~sl~y~FrilD~dgdG~Ls~~eL~~ 64 (70)
|+|-.||-+.... .+|.|+|.+|++....+.-. .-.-.+.|.|+|+|.|+|++|...+|+.
T Consensus 70 npfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~ 132 (189)
T KOG0038|consen 70 NPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEK 132 (189)
T ss_pred ChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHH
Confidence 6777888776633 45899999999987766433 3456789999999999999999999874
No 16
>PTZ00183 centrin; Provisional
Probab=97.74 E-value=0.00019 Score=45.03 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=52.7
Q ss_pred hHHHHHhhcc-CCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 6 VTKELLTECL-TFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 6 ~i~RiF~~~~-~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
-+.++|...- ..+|.++..+|..++.....+-++..++-+|.-+|.|++|.|+..++....+.
T Consensus 91 ~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 3677888773 45689999999999987766677888999999999999999999998777654
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.49 E-value=0.00014 Score=40.53 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.9
Q ss_pred HHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 41 ALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 41 sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
.|+..|+.+|.|++|+||..||....+.
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~ 28 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKH 28 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHH
Confidence 3788999999999999999999987754
No 18
>PTZ00184 calmodulin; Provisional
Probab=97.30 E-value=0.0015 Score=40.25 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=46.9
Q ss_pred HHHHHhhc-cCCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhh
Q psy11356 7 TKELLTEC-LTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYF 65 (70)
Q Consensus 7 i~RiF~~~-~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F 65 (70)
+.+.|... ...+|.+++++|..++-........+.++.+|+.+|.+++|.|+..+....
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 72 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTL 72 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHH
Confidence 44566655 346799999999998866555556789999999999999999999887654
No 19
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.90 E-value=0.0073 Score=33.01 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=44.2
Q ss_pred HHHHhhc-cCCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 8 KELLTEC-LTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 8 ~RiF~~~-~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
.++|... ...+|.++..++..++.+.. .+++.++-+|+.+|.+++|.|+..+....+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence 3566655 34579999999999887753 266778999999999999999988765433
No 20
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.88 E-value=0.0012 Score=42.28 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 39 PQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 39 ~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
...+.+.|..+|.|+||+||..||..+.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 3679999999999999999999998663
No 21
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=96.87 E-value=0.0062 Score=36.87 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=48.6
Q ss_pred HHHHHhhcc--CCCC-cccHHHHHHHHhh-----hcCCCChHHHHHHHHHhccCCCCeecHHHHHh
Q psy11356 7 TKELLTECL--TFET-QMDYKTYLDFVLS-----LENKHEPQALQYLFRFLDIKHQGYLDTFTLFY 64 (70)
Q Consensus 7 i~RiF~~~~--~~~g-~mdy~~Fv~fvla-----~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~ 64 (70)
+.++|..+- ..+| .|+..++...+-+ .....+++.++=+++-+|.|+||.|+-.+.-.
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~ 75 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMA 75 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 567787773 3578 6999999999998 66777888899999999999999999887643
No 22
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.85 E-value=0.0044 Score=37.25 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=47.6
Q ss_pred HHHHHhhccCC---CCcccHHHHHHHHhhh-cCCCC----hHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 7 TKELLTECLTF---ETQMDYKTYLDFVLSL-ENKHE----PQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 7 i~RiF~~~~~~---~g~mdy~~Fv~fvla~-e~k~~----~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
+-++|..+... +|.|+-.++..++-.. .+..+ ++.++.+|+.+|.|++|.|+..+......
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 56788888665 4699999999999643 22233 78899999999999999999988765543
No 23
>KOG0028|consensus
Probab=96.72 E-value=0.0045 Score=42.55 Aligned_cols=47 Identities=11% Similarity=0.230 Sum_probs=39.9
Q ss_pred CCcccHHHHHHHHhhhcCC-CChHHHHHHHHHhccCCCCeecHHHHHh
Q psy11356 18 ETQMDYKTYLDFVLSLENK-HEPQALQYLFRFLDIKHQGYLDTFTLFY 64 (70)
Q Consensus 18 ~g~mdy~~Fv~fvla~e~k-~~~~sl~y~FrilD~dgdG~Ls~~eL~~ 64 (70)
.|.|+|.+|+.-+...-.+ .+..-|+..||+.|.|++|-||+.+|..
T Consensus 83 ~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkr 130 (172)
T KOG0028|consen 83 SGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKR 130 (172)
T ss_pred CceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHH
Confidence 4899999999987766444 4678999999999999999999988754
No 24
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.71 E-value=0.0079 Score=36.42 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=46.0
Q ss_pred HHHHhhccCC---CCcccHHHHHHHHh---hhcCCCChHHHHHHHHHhccCCCCeecHHHHHhh
Q psy11356 8 KELLTECLTF---ETQMDYKTYLDFVL---SLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYF 65 (70)
Q Consensus 8 ~RiF~~~~~~---~g~mdy~~Fv~fvl---a~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F 65 (70)
=.+|..+... +|.|+-.++...+- +.-.+.+++.++-+++-+|.|++|.|+-.|.-.+
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~l 76 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTF 76 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHH
Confidence 3566666543 35999999999884 4566678899999999999999999998876443
No 25
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.62 E-value=0.0038 Score=27.78 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=22.9
Q ss_pred HHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 42 LQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 42 l~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
++-.|+.+|.+++|+|+..++....++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456789999999999999999887765
No 26
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.56 E-value=0.014 Score=35.07 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=46.2
Q ss_pred HHHHHhhcc--CC-CCcccHHHHHHHHhh-----hcCCCChHHHHHHHHHhccCCCCeecHHHHHhh
Q psy11356 7 TKELLTECL--TF-ETQMDYKTYLDFVLS-----LENKHEPQALQYLFRFLDIKHQGYLDTFTLFYF 65 (70)
Q Consensus 7 i~RiF~~~~--~~-~g~mdy~~Fv~fvla-----~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F 65 (70)
+.++|...- .. +|.++..++...+-+ ...+.+.+.++-+++.+|.|++|.|+..+....
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l 76 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSL 76 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 456777763 33 489999999998876 233556788999999999999999998876544
No 27
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.42 E-value=0.025 Score=34.02 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=46.2
Q ss_pred HHHHHhhc-cCCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 7 TKELLTEC-LTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 7 i~RiF~~~-~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
+.++|... ...+|.++.+++...+-.. .-+++.++-+|+.+|.+++|.|+..+.....
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~ 70 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAM 70 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence 56777776 3467999999999988663 3456778999999999999999988766544
No 28
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.42 E-value=0.017 Score=34.45 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=46.4
Q ss_pred HHHHHhhcc--CCCC-cccHHHHHHHHhh-hcC----CCChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 7 TKELLTECL--TFET-QMDYKTYLDFVLS-LEN----KHEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 7 i~RiF~~~~--~~~g-~mdy~~Fv~fvla-~e~----k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
+.++|...- ..+| .|+.+++...+-+ ... ..+++.++-+++-+|.|++|.|+-.+.....
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~ 78 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLV 78 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 567787773 3568 5999999999965 221 2467889999999999999999988775544
No 29
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.36 E-value=0.014 Score=35.59 Aligned_cols=56 Identities=9% Similarity=0.121 Sum_probs=43.6
Q ss_pred HHHHHhhccC--CCCcccHHHHHHHHhh-hcCCCCh-HHHHHHHHHhccCCCCeecHHHH
Q psy11356 7 TKELLTECLT--FETQMDYKTYLDFVLS-LENKHEP-QALQYLFRFLDIKHQGYLDTFTL 62 (70)
Q Consensus 7 i~RiF~~~~~--~~g~mdy~~Fv~fvla-~e~k~~~-~sl~y~FrilD~dgdG~Ls~~eL 62 (70)
+-.+|..+-. .+|.|+..++-..+-. .-++-+. ..++-.++-+|.|+||.|+-.|-
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF 69 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEF 69 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHH
Confidence 3445655533 5689999999999988 4344444 88999999999999999998874
No 30
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.36 E-value=0.017 Score=35.10 Aligned_cols=58 Identities=19% Similarity=0.376 Sum_probs=45.8
Q ss_pred HHHHHhhccCCC--C-cccHHHHHHHHhhh-----cCCCChHHHHHHHHHhccCCCCeecHHHHHh
Q psy11356 7 TKELLTECLTFE--T-QMDYKTYLDFVLSL-----ENKHEPQALQYLFRFLDIKHQGYLDTFTLFY 64 (70)
Q Consensus 7 i~RiF~~~~~~~--g-~mdy~~Fv~fvla~-----e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~ 64 (70)
+-++|..+-..+ | .|+-.+|..++-.+ ..+.++..++-+++-+|.|+||.|+-.|.-.
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~ 76 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLN 76 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence 556777743332 3 79999999999887 3456789999999999999999999887643
No 31
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.27 E-value=0.029 Score=32.89 Aligned_cols=60 Identities=13% Similarity=0.274 Sum_probs=46.0
Q ss_pred HHHHHhhccC---CCCcccHHHHHHHHhhhc-----CCCChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 7 TKELLTECLT---FETQMDYKTYLDFVLSLE-----NKHEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 7 i~RiF~~~~~---~~g~mdy~~Fv~fvla~e-----~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
+.++|...-+ .+|.++..++...+-+.- ...+.+.++-+++-+|.+++|.|+..+....+
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 4556776644 568999999999986522 22357889999999999999999998875543
No 32
>KOG0027|consensus
Probab=96.20 E-value=0.024 Score=36.54 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=46.7
Q ss_pred HHHHHhhc-cCCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHH
Q psy11356 7 TKELLTEC-LTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFT 61 (70)
Q Consensus 7 i~RiF~~~-~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~e 61 (70)
+..+|... ...+|.++..++...+.....+.+.+-++-.+|-.|+||||.|+-.+
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~e 142 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEE 142 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHH
Confidence 44555555 33679999999999999999999999999999999999999996644
No 33
>KOG0036|consensus
Probab=96.13 E-value=0.016 Score=44.79 Aligned_cols=57 Identities=21% Similarity=0.443 Sum_probs=46.2
Q ss_pred HHHHHhhc-cCCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 7 TKELLTEC-LTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 7 i~RiF~~~-~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
.+-+|+.. ..++|.+||.+|..++.+.| +.+.-.|.-+|+++||.|++.||...+++
T Consensus 53 ~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E-----~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~ 110 (463)
T KOG0036|consen 53 AKMLFSAMDANRDGRVDYSEFKRYLDNKE-----LELYRIFQSIDLEHDGKIDPNEIWRYLKD 110 (463)
T ss_pred HHHHHHhcccCcCCcccHHHHHHHHHHhH-----HHHHHHHhhhccccCCccCHHHHHHHHHH
Confidence 45566655 55789999999999998755 56677888899999999999999887764
No 34
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.11 E-value=0.032 Score=35.67 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=40.9
Q ss_pred HHHHhhc-cCCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 8 KELLTEC-LTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 8 ~RiF~~~-~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
.-.|... ...+|.++.++.-.+.+ ....+-++-||+-.|.|+||+||..|-..++
T Consensus 51 ~w~F~~lD~d~DG~Ls~~EL~~~~l----~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 51 GWMFNQLDGNYDGKLSHHELAPIRL----DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHc----cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3345444 34679999999987761 1224666889999999999999999977665
No 35
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.01 E-value=0.026 Score=31.85 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=34.0
Q ss_pred cccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 20 QMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 20 ~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
+|+|++--.++--+.-.-+.+=.+-.|+-.|.+++|.|...|+..||+.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4677776666555433334444455999999999999999999999985
No 36
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.91 E-value=0.0073 Score=33.03 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.9
Q ss_pred HHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 44 YLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 44 y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
-.|+.+|.|++|.|+..|+...++.
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~ 27 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGK 27 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4799999999999999999887753
No 37
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=95.88 E-value=0.043 Score=33.20 Aligned_cols=60 Identities=7% Similarity=0.116 Sum_probs=46.3
Q ss_pred HHHHHhhccC--CCC-cccHHHHHHHHhhh-----cCCCChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 7 TKELLTECLT--FET-QMDYKTYLDFVLSL-----ENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 7 i~RiF~~~~~--~~g-~mdy~~Fv~fvla~-----e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
+-|+|..+-. .+| .|+-.++...+-.. ..+.++..++-+++-+|.|+||.|+-.|.-...
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 4566887753 346 59999999988553 334477899999999999999999998865543
No 38
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=95.79 E-value=0.055 Score=36.67 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=45.4
Q ss_pred CCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 17 FETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 17 ~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
.+|.++..+.+.-+-....+-+.+.++-.++.+|.|+||.|+-.+.-..+
T Consensus 105 ~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 105 HDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred CCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 45999999999999999999999999999999999999999988876544
No 39
>KOG0031|consensus
Probab=95.78 E-value=0.007 Score=41.52 Aligned_cols=39 Identities=18% Similarity=0.363 Sum_probs=33.7
Q ss_pred HhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 30 VLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 30 vla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
++|+-+++..|-++-.|.++|.|+||+|...||+..|..
T Consensus 22 vFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aS 60 (171)
T KOG0031|consen 22 VFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLAS 60 (171)
T ss_pred HHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHH
Confidence 456666777899999999999999999999999998853
No 40
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.75 E-value=0.052 Score=33.73 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=43.6
Q ss_pred HHHhhccCCCCcccHHHHHHHHhhh-----cCCCChHHHHHHHHHhccCCCCeecHHHH
Q psy11356 9 ELLTECLTFETQMDYKTYLDFVLSL-----ENKHEPQALQYLFRFLDIKHQGYLDTFTL 62 (70)
Q Consensus 9 RiF~~~~~~~g~mdy~~Fv~fvla~-----e~k~~~~sl~y~FrilD~dgdG~Ls~~eL 62 (70)
++|..+.-..+.|+-++|-.++-++ .++..|.++.=+++-||.|+||-|+-.|-
T Consensus 12 ~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF 70 (91)
T cd05024 12 LTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSF 70 (91)
T ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 5676665344689999999999655 34567999999999999999999998764
No 41
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.67 E-value=0.01 Score=37.65 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=25.1
Q ss_pred cCCCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 34 ENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 34 e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
.......++.+.|.=||.|+||+|+..||..+.+
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~ 81 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRR 81 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGS
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHH
Confidence 3444568999999999999999999999988765
No 42
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.67 E-value=0.029 Score=42.46 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=37.4
Q ss_pred HHHHHhhc-cCCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 7 TKELLTEC-LTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 7 i~RiF~~~-~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
+..+|..+ ...+|.++..+|+. .+-+|+.+|.||||.||..|+...++.
T Consensus 336 l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 336 AQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45556655 33568899998842 577899999999999999998877654
No 43
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.21 E-value=0.028 Score=33.77 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 39 PQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 39 ~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
...++-.|+.+|.|++|.|+..++...++.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 356778899999999999999999988754
No 44
>KOG4666|consensus
Probab=95.14 E-value=0.027 Score=42.77 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=41.8
Q ss_pred CCcccHHHHHHHHhhhcCC-CChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 18 ETQMDYKTYLDFVLSLENK-HEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 18 ~g~mdy~~Fv~fvla~e~k-~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
.|..||++.+--+.-.-+. .+|.-|+|-|+.++++.||+++..+|..-.
T Consensus 273 tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~il 322 (412)
T KOG4666|consen 273 TGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLIL 322 (412)
T ss_pred CCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHH
Confidence 4899999999887666555 579999999999999999999998887543
No 45
>KOG0044|consensus
Probab=95.03 E-value=0.069 Score=37.07 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=41.4
Q ss_pred CCCcccHHHHHHHHhhhcC----------CCC-hHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 17 FETQMDYKTYLDFVLSLEN----------KHE-PQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 17 ~~g~mdy~~Fv~fvla~e~----------k~~-~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
.+|.+++.++++.+-|.-. ..+ .+....+|+=+|.|.||.||..|.....+.
T Consensus 113 gdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 113 GDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred CCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 4689999999998876521 222 477899999999999999999998766543
No 46
>KOG4223|consensus
Probab=94.91 E-value=0.08 Score=39.59 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=39.5
Q ss_pred cCCCCcccHHHHHHHHhhhcCC-CCh----HHHHHHHHHhccCCCCeecHHHHHh
Q psy11356 15 LTFETQMDYKTYLDFVLSLENK-HEP----QALQYLFRFLDIKHQGYLDTFTLFY 64 (70)
Q Consensus 15 ~~~~g~mdy~~Fv~fvla~e~k-~~~----~sl~y~FrilD~dgdG~Ls~~eL~~ 64 (70)
.+.+|++++++||-=+.+.+.. .+| .--+-|+.-.|.|+||+|+..||..
T Consensus 211 kn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~ 265 (325)
T KOG4223|consen 211 KNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLD 265 (325)
T ss_pred cCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhc
Confidence 4457999999999888877642 223 3446889999999999999999863
No 47
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=94.81 E-value=0.038 Score=32.94 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhc-cCCCCe-ecHHHHHhhhhc
Q psy11356 39 PQALQYLFRFLD-IKHQGY-LDTFTLFYFFKI 68 (70)
Q Consensus 39 ~~sl~y~FrilD-~dgdG~-Ls~~eL~~F~~~ 68 (70)
...++=.|+++| .||+|+ |+..||...++.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~ 39 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHH
Confidence 356778999997 999995 999999988864
No 48
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.67 E-value=0.17 Score=31.75 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=40.9
Q ss_pred HHHHhhccCCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHH
Q psy11356 8 KELLTECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTL 62 (70)
Q Consensus 8 ~RiF~~~~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL 62 (70)
+++|+.....+|.++-.+-..++. .. +=..+.|.-+|.+-|.|+||+|+..|-
T Consensus 13 ~~~F~~l~~~~g~isg~~a~~~f~-~S-~L~~~~L~~IW~LaD~~~dG~L~~~EF 65 (104)
T PF12763_consen 13 DQIFQSLDPQDGKISGDQAREFFM-KS-GLPRDVLAQIWNLADIDNDGKLDFEEF 65 (104)
T ss_dssp HHHHHCTSSSTTEEEHHHHHHHHH-HT-TSSHHHHHHHHHHH-SSSSSEEEHHHH
T ss_pred HHHHHhcCCCCCeEeHHHHHHHHH-Hc-CCCHHHHHHHHhhhcCCCCCcCCHHHH
Confidence 578887766779999999887644 22 223488999999999999999998874
No 49
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=94.47 E-value=0.055 Score=26.69 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=20.9
Q ss_pred HHHHHhhc-cCCCCcccHHHHHHHHhh
Q psy11356 7 TKELLTEC-LTFETQMDYKTYLDFVLS 32 (70)
Q Consensus 7 i~RiF~~~-~~~~g~mdy~~Fv~fvla 32 (70)
++++|+.. ...+|.+++++|+..+-+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 46788877 557899999999988754
No 50
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.22 E-value=0.065 Score=32.08 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcc-CC-CCeecHHHHHhhhhc
Q psy11356 39 PQALQYLFRFLDI-KH-QGYLDTFTLFYFFKI 68 (70)
Q Consensus 39 ~~sl~y~FrilD~-dg-dG~Ls~~eL~~F~~~ 68 (70)
-..++-.|+.+|. || +|+||..||...++.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 3567788999997 98 699999999987653
No 51
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=94.20 E-value=0.059 Score=31.57 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcc--CCCCeecHHHHHhhhhc
Q psy11356 40 QALQYLFRFLDI--KHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 40 ~sl~y~FrilD~--dgdG~Ls~~eL~~F~~~ 68 (70)
..++-.|+.+|. |++|+|+..++...++.
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 456677999999 89999999999988754
No 52
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.85 E-value=0.11 Score=30.77 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCCChHHHHHHHHHhccCCCCeecHHHHHh
Q psy11356 35 NKHEPQALQYLFRFLDIKHQGYLDTFTLFY 64 (70)
Q Consensus 35 ~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~ 64 (70)
|..++..+.--||.| -+|++|||..||+.
T Consensus 1 d~~s~eqv~~aFr~l-A~~KpyVT~~dLr~ 29 (69)
T PF08726_consen 1 DQDSAEQVEEAFRAL-AGGKPYVTEEDLRR 29 (69)
T ss_dssp TSSTCHHHHHHHHHH-CTSSSCEEHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCcccHHHHHH
Confidence 456888999999999 99999999999975
No 53
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=93.67 E-value=0.11 Score=32.23 Aligned_cols=31 Identities=3% Similarity=0.319 Sum_probs=26.0
Q ss_pred chhhHHHHHhhc-cCCCCcccHHHHHHHHhhh
Q psy11356 3 CSIVTKELLTEC-LTFETQMDYKTYLDFVLSL 33 (70)
Q Consensus 3 t~~~i~RiF~~~-~~~~g~mdy~~Fv~fvla~ 33 (70)
.|..|++|++.- .+.+|++||.+|+.+|.+.
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 367899999877 5678999999999998765
No 54
>KOG2643|consensus
Probab=93.52 E-value=0.04 Score=42.97 Aligned_cols=46 Identities=13% Similarity=0.296 Sum_probs=36.8
Q ss_pred CCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhh
Q psy11356 18 ETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYF 65 (70)
Q Consensus 18 ~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F 65 (70)
+|-|+|++|+-++.-..-.. .+.+-.|+++|+||||-|+..|...-
T Consensus 213 ~GLIsfSdYiFLlTlLS~p~--~~F~IAFKMFD~dgnG~IdkeEF~~v 258 (489)
T KOG2643|consen 213 SGLISFSDYIFLLTLLSIPE--RNFRIAFKMFDLDGNGEIDKEEFETV 258 (489)
T ss_pred CCeeeHHHHHHHHHHHccCc--ccceeeeeeeecCCCCcccHHHHHHH
Confidence 38899999998887765433 34566799999999999999987653
No 55
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=93.19 E-value=0.13 Score=26.24 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.1
Q ss_pred HHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 42 LQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 42 l~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
++-.|+.+|.+++|.|+..++....+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~ 27 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALK 27 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45578999999999999999987665
No 56
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=92.57 E-value=0.2 Score=30.19 Aligned_cols=30 Identities=17% Similarity=0.012 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhc-cCCCC-eecHHHHHhhhhc
Q psy11356 39 PQALQYLFRFLD-IKHQG-YLDTFTLFYFFKI 68 (70)
Q Consensus 39 ~~sl~y~FrilD-~dgdG-~Ls~~eL~~F~~~ 68 (70)
-..|+-.|+.+| .||+| +|+..||....+.
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 357888999998 89999 6999999876654
No 57
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=92.51 E-value=0.19 Score=30.59 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcc-CCCCeecHHHHHhhhhc
Q psy11356 40 QALQYLFRFLDI-KHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 40 ~sl~y~FrilD~-dgdG~Ls~~eL~~F~~~ 68 (70)
..|.=.|+.+|. +|+|+|+..||..-.+.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHH
Confidence 567789999999 99999999999876554
No 58
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.86 E-value=0.3 Score=36.99 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHhccCCCCeecHHHHH
Q psy11356 37 HEPQALQYLFRFLDIKHQGYLDTFTLF 63 (70)
Q Consensus 37 ~~~~sl~y~FrilD~dgdG~Ls~~eL~ 63 (70)
.-.+.++..|+++|.||||+|+..|+.
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 347899999999999999999999973
No 59
>KOG4347|consensus
Probab=91.61 E-value=0.22 Score=40.33 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=48.2
Q ss_pred chhhHHHHHhhc-cCCCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHH
Q psy11356 3 CSIVTKELLTEC-LTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFT 61 (70)
Q Consensus 3 t~~~i~RiF~~~-~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~e 61 (70)
+..|+.|+|.-- ...+|.++|+++|.=+-..-...--++|+++|+++|.+++ -+...+
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 456788888855 3356999999999999888888889999999999999998 666554
No 60
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=91.54 E-value=0.36 Score=29.18 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=24.3
Q ss_pred hhhHHHHHhhc-cCCCCcccHHHHHHHHhhh
Q psy11356 4 SIVTKELLTEC-LTFETQMDYKTYLDFVLSL 33 (70)
Q Consensus 4 ~~~i~RiF~~~-~~~~g~mdy~~Fv~fvla~ 33 (70)
+.-++++++.. ...+|+++|++|+.++...
T Consensus 51 ~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 51 PGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45688999876 4567999999999988754
No 61
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=90.98 E-value=0.33 Score=29.25 Aligned_cols=29 Identities=14% Similarity=0.065 Sum_probs=23.1
Q ss_pred HHHHHHHHHhc-cCCCC-eecHHHHHhhhhc
Q psy11356 40 QALQYLFRFLD-IKHQG-YLDTFTLFYFFKI 68 (70)
Q Consensus 40 ~sl~y~FrilD-~dgdG-~Ls~~eL~~F~~~ 68 (70)
..+.=.|+.+| .||+| .||..||...++.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~ 40 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQR 40 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHH
Confidence 34455599999 89999 5999999988754
No 62
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=90.41 E-value=0.45 Score=25.25 Aligned_cols=29 Identities=7% Similarity=0.198 Sum_probs=22.7
Q ss_pred chhhHHHHHhhc-cCCCCcccHHHHHHHHh
Q psy11356 3 CSIVTKELLTEC-LTFETQMDYKTYLDFVL 31 (70)
Q Consensus 3 t~~~i~RiF~~~-~~~~g~mdy~~Fv~fvl 31 (70)
++--++++|... ...+|.++|.+|+.++.
T Consensus 23 s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 23 SEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp CHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 344578888877 44679999999999875
No 63
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=89.89 E-value=0.21 Score=23.40 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=12.0
Q ss_pred ccCCCCeecHHHHHh
Q psy11356 50 DIKHQGYLDTFTLFY 64 (70)
Q Consensus 50 D~dgdG~Ls~~eL~~ 64 (70)
|+||||.++.-|+..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 899999999988753
No 64
>KOG0031|consensus
Probab=89.10 E-value=1.3 Score=30.46 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=39.1
Q ss_pred CCcccHHHHHHHHhhhcCCCC-hHHHHHHHHHhccCCCCeecHHHHHhh
Q psy11356 18 ETQMDYKTYLDFVLSLENKHE-PQALQYLFRFLDIKHQGYLDTFTLFYF 65 (70)
Q Consensus 18 ~g~mdy~~Fv~fvla~e~k~~-~~sl~y~FrilD~dgdG~Ls~~eL~~F 65 (70)
+|.|+|.-|+-..-..-+... ...|.=.|+++|-+|+|.|..+.|..-
T Consensus 78 ~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~ 126 (171)
T KOG0031|consen 78 PGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLREL 126 (171)
T ss_pred CCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHH
Confidence 378999998877665555555 588999999999999999999888754
No 65
>KOG2562|consensus
Probab=89.05 E-value=0.64 Score=36.54 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=46.4
Q ss_pred hhhHHHHHhhc-cCCCCcccHHHHH-----HHH-hhhcCCCChHHHHHH-----------HHHhccCCCCeecHHHHHhh
Q psy11356 4 SIVTKELLTEC-LTFETQMDYKTYL-----DFV-LSLENKHEPQALQYL-----------FRFLDIKHQGYLDTFTLFYF 65 (70)
Q Consensus 4 ~~~i~RiF~~~-~~~~g~mdy~~Fv-----~fv-la~e~k~~~~sl~y~-----------FrilD~dgdG~Ls~~eL~~F 65 (70)
-.+|.|||=-+ .++.|++..++-. +-| .+.|.-..++.++|| |.-||-|+||.|+..+|..|
T Consensus 224 ~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry 303 (493)
T KOG2562|consen 224 ETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRY 303 (493)
T ss_pred HHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHH
Confidence 45788998755 4567888777653 322 233333567777775 77799999999999999887
Q ss_pred hhcc
Q psy11356 66 FKID 69 (70)
Q Consensus 66 ~~~~ 69 (70)
-.+.
T Consensus 304 ~d~t 307 (493)
T KOG2562|consen 304 GDHT 307 (493)
T ss_pred hccc
Confidence 5543
No 66
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=88.59 E-value=0.79 Score=27.56 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=23.5
Q ss_pred chhhHHHHHhhc-cCCCCcccHHHHHHHHhhh
Q psy11356 3 CSIVTKELLTEC-LTFETQMDYKTYLDFVLSL 33 (70)
Q Consensus 3 t~~~i~RiF~~~-~~~~g~mdy~~Fv~fvla~ 33 (70)
++.-++++++.. ...+|.++|++|+.++...
T Consensus 49 t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 49 QDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 445588888876 4567999999999887543
No 67
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=87.68 E-value=2.2 Score=24.59 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHhhhcC--CCChHHHHHHHHHhccC----CCCeecHHHHHhhh
Q psy11356 7 TKELLTECLTFETQMDYKTYLDFVLSLEN--KHEPQALQYLFRFLDIK----HQGYLDTFTLFYFF 66 (70)
Q Consensus 7 i~RiF~~~~~~~g~mdy~~Fv~fvla~e~--k~~~~sl~y~FrilD~d----gdG~Ls~~eL~~F~ 66 (70)
|+.||..+..-.+.|+-++|..|+--+-. ..++..++-+++-+..+ .+|.||......|-
T Consensus 2 i~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 2 IEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 57889988554579999999999876622 23577777777766444 47999988877764
No 68
>KOG4223|consensus
Probab=87.48 E-value=1.2 Score=33.51 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=39.0
Q ss_pred HHHhhc-cCCCCcccHHHHHHHHhhhcCCCC-hHHHHHHHHHhccCCCCeecHHH
Q psy11356 9 ELLTEC-LTFETQMDYKTYLDFVLSLENKHE-PQALQYLFRFLDIKHQGYLDTFT 61 (70)
Q Consensus 9 RiF~~~-~~~~g~mdy~~Fv~fvla~e~k~~-~~sl~y~FrilD~dgdG~Ls~~e 61 (70)
|=|..+ ...+|.++-++|..|+=++++..- +--|+==-+=+|-||||.|+..|
T Consensus 167 ~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eE 221 (325)
T KOG4223|consen 167 ERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEE 221 (325)
T ss_pred HHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHH
Confidence 345544 445689999999999999997654 44444445558999999999776
No 69
>KOG0034|consensus
Probab=87.07 E-value=3.5 Score=28.35 Aligned_cols=52 Identities=6% Similarity=0.040 Sum_probs=40.8
Q ss_pred CCCcccHHHHHHHHhhhcCCCC-------hHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 17 FETQMDYKTYLDFVLSLENKHE-------PQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 17 ~~g~mdy~~Fv~fvla~e~k~~-------~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
.+|.++-+++...|-++-.-.. .+=+...|.-.|.|+||.||-.|-..+...
T Consensus 117 ~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 117 GDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred CCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 3589999999988888754321 356788999999999999999987766543
No 70
>KOG3866|consensus
Probab=86.80 E-value=0.28 Score=37.41 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.2
Q ss_pred HHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 43 QYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 43 ~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
+-||.+.|+|+||+++..||+.-|.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFt 271 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFT 271 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHH
Confidence 5689999999999999999987663
No 71
>KOG0036|consensus
Probab=85.99 E-value=3.1 Score=32.53 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=49.8
Q ss_pred HHHHHhhccC-CCCcccHHHHHHHHhhhcCC-CChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 7 TKELLTECLT-FETQMDYKTYLDFVLSLENK-HEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 7 i~RiF~~~~~-~~g~mdy~~Fv~fvla~e~k-~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
+.++|+..-. .+|.+|..+-..-+.+.... ..+++.+-.|+..|.|.||.++-+|-..+-
T Consensus 16 ~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~ 77 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYL 77 (463)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHH
Confidence 5678887744 56999999999888888666 557999999999999999999988766543
No 72
>KOG0037|consensus
Probab=85.62 E-value=2.7 Score=30.09 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=40.8
Q ss_pred chhhHHHHHhhccCC-CCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHH
Q psy11356 3 CSIVTKELLTECLTF-ETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTF 60 (70)
Q Consensus 3 t~~~i~RiF~~~~~~-~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~ 60 (70)
+|-+++-|+...-.. +|+|+|.+|+..+.-. +++.=.||-+|-+.+|.|+..
T Consensus 158 spq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L------~~lt~~Fr~~D~~q~G~i~~~ 210 (221)
T KOG0037|consen 158 SPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL------QRLTEAFRRRDTAQQGSITIS 210 (221)
T ss_pred CHHHHHHHHHHhccccCCceeHHHHHHHHHHH------HHHHHHHHHhccccceeEEEe
Confidence 566677777766554 7899999999888654 677788999999999998754
No 73
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=84.82 E-value=1.8 Score=25.75 Aligned_cols=30 Identities=10% Similarity=0.326 Sum_probs=23.5
Q ss_pred hhhHHHHHhhcc-CCCCcccHHHHHHHHhhh
Q psy11356 4 SIVTKELLTECL-TFETQMDYKTYLDFVLSL 33 (70)
Q Consensus 4 ~~~i~RiF~~~~-~~~g~mdy~~Fv~fvla~ 33 (70)
+.-++.+|...- ..+|.++|++|+.++...
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 456888888773 357999999999988754
No 74
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=82.00 E-value=0.77 Score=28.97 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=28.4
Q ss_pred CCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHH
Q psy11356 17 FETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTL 62 (70)
Q Consensus 17 ~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL 62 (70)
.+|.++-++.-.+.... .....-++.||+-=|+|+||.||..|-
T Consensus 67 ~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW 110 (113)
T PF10591_consen 67 KDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEW 110 (113)
T ss_dssp -SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHH
T ss_pred CCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 46777777755444333 233345688999999999999999885
No 75
>PF14658 EF-hand_9: EF-hand domain
Probab=78.92 E-value=8.2 Score=22.63 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=44.8
Q ss_pred HHHhhccC-CCCcccHHHHHHHHhhhcC-CCChHHHHHHHHHhccCCC-CeecHHHH
Q psy11356 9 ELLTECLT-FETQMDYKTYLDFVLSLEN-KHEPQALQYLFRFLDIKHQ-GYLDTFTL 62 (70)
Q Consensus 9 RiF~~~~~-~~g~mdy~~Fv~fvla~e~-k~~~~sl~y~FrilD~dgd-G~Ls~~eL 62 (70)
+.|+-+-+ ..|.+.-+..+.++-|.-. ..+...|+=+-+.+|-+|. |-|+.++-
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F 58 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTF 58 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHH
Confidence 45676644 4599999999999999988 4667899999999999997 99987763
No 76
>PLN02964 phosphatidylserine decarboxylase
Probab=78.27 E-value=9 Score=31.09 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=34.9
Q ss_pred HHHHhhc-cCCCCcccHHHHHHHHhhhcC--CCChHH---HHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 8 KELLTEC-LTFETQMDYKTYLDFVLSLEN--KHEPQA---LQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 8 ~RiF~~~-~~~~g~mdy~~Fv~fvla~e~--k~~~~s---l~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
.+.|... ...+|.+ +-.++.... ..+... ++-.|+.+|.|++|.|+..|+.....
T Consensus 146 keaF~lfD~dgdG~i-----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~ 206 (644)
T PLN02964 146 CESFDLLDPSSSNKV-----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIK 206 (644)
T ss_pred HHHHHHHCCCCCCcC-----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 4455544 3345665 333333333 233333 78889999999999999998876553
No 77
>KOG4065|consensus
Probab=76.49 E-value=2.4 Score=28.26 Aligned_cols=29 Identities=31% Similarity=0.669 Sum_probs=23.7
Q ss_pred CCCChHHHHH-HHHHhccCCCCeecHHHHH
Q psy11356 35 NKHEPQALQY-LFRFLDIKHQGYLDTFTLF 63 (70)
Q Consensus 35 ~k~~~~sl~y-~FrilD~dgdG~Ls~~eL~ 63 (70)
.+-+|+.+++ .|+..|+|++|.|+--||.
T Consensus 61 a~mtpeqlqfHYF~MHDldknn~lDGiEl~ 90 (144)
T KOG4065|consen 61 AKMTPEQLQFHYFSMHDLDKNNFLDGIELL 90 (144)
T ss_pred hhCCHHHHhhhhhhhhccCcCCcchHHHHH
Confidence 3456888876 5899999999999988874
No 78
>KOG0030|consensus
Probab=75.90 E-value=12 Score=25.44 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=34.0
Q ss_pred CcccHHHHHHHHhhh-cCCCC--hHHHHHHHHHhccCCCCeecHHHHHh
Q psy11356 19 TQMDYKTYLDFVLSL-ENKHE--PQALQYLFRFLDIKHQGYLDTFTLFY 64 (70)
Q Consensus 19 g~mdy~~Fv~fvla~-e~k~~--~~sl~y~FrilD~dgdG~Ls~~eL~~ 64 (70)
..++|+.|+-.+-+. .+|.. -.-.--=.|+.|-+|+|.|...+|+.
T Consensus 64 ~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRh 112 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRH 112 (152)
T ss_pred hhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHH
Confidence 469999999988777 34432 22222347899999999999999875
No 79
>KOG0040|consensus
Probab=74.14 E-value=7.8 Score=35.20 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=41.7
Q ss_pred cCCCCcccHHHHHHHHhhhcCC--CChHHHHHHHHHhccCCCCeecHHHH
Q psy11356 15 LTFETQMDYKTYLDFVLSLENK--HEPQALQYLFRFLDIKHQGYLDTFTL 62 (70)
Q Consensus 15 ~~~~g~mdy~~Fv~fvla~e~k--~~~~sl~y~FrilD~dgdG~Ls~~eL 62 (70)
|.+.|.+.-.+|+.|+++.|-. .+..+|+-.||-||- |..|+|..++
T Consensus 2307 P~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2307 PNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred CCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHH
Confidence 5678999999999999998544 566799999999999 9999999888
No 80
>KOG1707|consensus
Probab=73.95 E-value=2.8 Score=33.94 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=21.8
Q ss_pred HHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 40 QALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 40 ~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
.|+.=.|+|-|.|.||+||..||+.|=
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ 221 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQ 221 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHH
Confidence 455555666799999999999999873
No 81
>KOG4251|consensus
Probab=73.74 E-value=2.3 Score=31.68 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 37 HEPQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 37 ~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
.+..+|.-.|.-.|+|.||.||..||...-.+
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwIme 129 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIME 129 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHH
Confidence 44577888888888888888888888765443
No 82
>PLN02952 phosphoinositide phospholipase C
Probab=72.21 E-value=11 Score=30.44 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=40.8
Q ss_pred CCcccHHHHHHHHhhhcCCC--ChHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 18 ETQMDYKTYLDFVLSLENKH--EPQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 18 ~g~mdy~~Fv~fvla~e~k~--~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
.|.++|++|..|+-....+. .+.-|+..|+=+= .+++.+|..++..|.++
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~-~~~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFS-VGGGHMGADQLRRFLVL 65 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHh-CCCCccCHHHHHHHHHH
Confidence 47899999999988776554 5889999998874 45578999999999865
No 83
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=69.18 E-value=7.8 Score=23.90 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=21.6
Q ss_pred HHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 40 QALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 40 ~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
...+|.|+.+ -|.+|.++..-|..|.++
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHH
Confidence 5789999999 788999999999888765
No 84
>KOG0030|consensus
Probab=68.16 E-value=6.6 Score=26.64 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=19.3
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHhh
Q psy11356 7 TKELLTECLTFETQMDYKTYLDFVLS 32 (70)
Q Consensus 7 i~RiF~~~~~~~g~mdy~~Fv~fvla 32 (70)
++-+-+++...+|.++|++||.-+++
T Consensus 126 Ve~Llag~eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 126 VEELLAGQEDSNGCINYEAFVKHIMS 151 (152)
T ss_pred HHHHHccccccCCcCcHHHHHHHHhc
Confidence 34455555556799999999998875
No 85
>KOG3555|consensus
Probab=67.83 E-value=4.3 Score=31.35 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=26.1
Q ss_pred HHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 40 QALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 40 ~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
.++.|.|+=||.|-||.|+..||+--+.+
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ld 278 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELD 278 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhcc
Confidence 78999999999999999999999876654
No 86
>KOG1955|consensus
Probab=64.06 E-value=4.7 Score=32.67 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhccCCCCeecHHHH
Q psy11356 39 PQALQYLFRFLDIKHQGYLDTFTL 62 (70)
Q Consensus 39 ~~sl~y~FrilD~dgdG~Ls~~eL 62 (70)
...|.++|.+-|+|.||-||..|.
T Consensus 264 i~ELshIWeLsD~d~DGALtL~EF 287 (737)
T KOG1955|consen 264 IEELSHIWELSDVDRDGALTLSEF 287 (737)
T ss_pred hHHHHHHHhhcccCccccccHHHH
Confidence 578999999999999999998774
No 87
>KOG0377|consensus
Probab=63.36 E-value=8.4 Score=30.84 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=35.8
Q ss_pred CCcccHHHHHHHHhhh----c-C-------CCChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 18 ETQMDYKTYLDFVLSL----E-N-------KHEPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 18 ~g~mdy~~Fv~fvla~----e-~-------k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
+|.+.|+.-++-+-.+ | . -.+..+++-+||++|-|+.|.||..|...=+
T Consensus 513 d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~ 573 (631)
T KOG0377|consen 513 DGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAW 573 (631)
T ss_pred CcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHH
Confidence 5888998877654322 1 0 1234788999999999999999999876543
No 88
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=60.33 E-value=38 Score=20.86 Aligned_cols=45 Identities=13% Similarity=0.294 Sum_probs=33.3
Q ss_pred cccHHHHHHHHhhhcCCCC---hHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 20 QMDYKTYLDFVLSLENKHE---PQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 20 ~mdy~~Fv~fvla~e~k~~---~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
-+..+.|...+-...+... ..||++ .+|+-++|+||..|..-|=|
T Consensus 22 IVPW~~F~~~L~~~h~~~~~~~~~aLk~---TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSGLEAMALKS---TIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSHHHHHHHHH---HH-TTSSSEEEHHHHHHHHH
T ss_pred EeeHHHHHHHHHHhcCCCchHHHHHHHH---HHhcccCCccchhhhHHHHH
Confidence 4778888888877777665 366776 69999999999999887743
No 89
>KOG0041|consensus
Probab=59.71 E-value=6.4 Score=28.40 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=25.3
Q ss_pred CCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 36 KHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 36 k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
+...+-.+=.|+-+|-|-||||+..||..+-+
T Consensus 95 rkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmE 126 (244)
T KOG0041|consen 95 RKQIKDAESMFKQYDEDRDGFIDLMELKRMME 126 (244)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 34445566679999999999999999987643
No 90
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=59.63 E-value=56 Score=22.60 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=44.2
Q ss_pred hHHHHHhhcc-CCCCcccHHHHHHHHhhhcCCCCh-----HHHHHHHH-HhccCCCCeecHHHHHhhhhc
Q psy11356 6 VTKELLTECL-TFETQMDYKTYLDFVLSLENKHEP-----QALQYLFR-FLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 6 ~i~RiF~~~~-~~~g~mdy~~Fv~fvla~e~k~~~-----~sl~y~Fr-ilD~dgdG~Ls~~eL~~F~~~ 68 (70)
=.+.||+.+. +..+.+.+++....+-+..+...| ..+|+.=- +|=-|.||+|+..+++-=|.+
T Consensus 97 kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~vYDG 166 (174)
T PF05042_consen 97 KFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGVYDG 166 (174)
T ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhhcch
Confidence 3567888774 356899999999999998887666 33333211 122478999999999876654
No 91
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=57.57 E-value=7.8 Score=28.47 Aligned_cols=41 Identities=27% Similarity=0.610 Sum_probs=32.3
Q ss_pred hHHHHHhhccCCC-------------CcccHHHHHHHHhhhcCC-CChHHHHHHHH
Q psy11356 6 VTKELLTECLTFE-------------TQMDYKTYLDFVLSLENK-HEPQALQYLFR 47 (70)
Q Consensus 6 ~i~RiF~~~~~~~-------------g~mdy~~Fv~fvla~e~k-~~~~sl~y~Fr 47 (70)
+=.||+..|.+++ .+||| +|+.+.|+-..+ .|-+||.|.|.
T Consensus 13 ~r~~l~~~CLNr~Fd~vL~~~R~~p~~emd~-~fLq~yL~~S~qwgHv~Si~yIW~ 67 (267)
T PF05476_consen 13 VRRRLYLQCLNREFDDVLAELRQIPVDEMDY-SFLQLYLARSCQWGHVPSIDYIWY 67 (267)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHcCcHhHhhH-HHHHHHHHHHHHHhcchHHHHHHH
Confidence 3457777776652 58998 599999999888 68999999985
No 92
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=57.20 E-value=13 Score=21.13 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=28.1
Q ss_pred HHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 27 LDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 27 v~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
|.|.++.+|-... +|+.+.++-+++|++....|..|=|
T Consensus 5 vEfYFSd~NL~~D---~fL~~~~~~~~~g~Vpi~~i~~F~r 42 (61)
T PF05383_consen 5 VEFYFSDENLPRD---KFLRSQMDSNPDGWVPISTILSFNR 42 (61)
T ss_dssp HHHHTSHHHHCC----HHHHHHHCTTTTTBEEHHHHTTSHH
T ss_pred HHHhcCHHHhCcC---HHHHHHHHhcCCCcEeHHHHHchHH
Confidence 4455666555443 5888999999999999999887744
No 93
>KOG0377|consensus
Probab=57.00 E-value=53 Score=26.50 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=35.3
Q ss_pred CCcccHHHHHH---HHhhhcCCC-ChHHHHHHHHHhccCCCCeecHHHHHh
Q psy11356 18 ETQMDYKTYLD---FVLSLENKH-EPQALQYLFRFLDIKHQGYLDTFTLFY 64 (70)
Q Consensus 18 ~g~mdy~~Fv~---fvla~e~k~-~~~sl~y~FrilD~dgdG~Ls~~eL~~ 64 (70)
.|+++-++|.. ++.+.-+.+ +..-+--.=|.+|+|+||.|+..|+-.
T Consensus 561 SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLe 611 (631)
T KOG0377|consen 561 SGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLE 611 (631)
T ss_pred CCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHH
Confidence 48999888854 444555554 456777788999999999999887544
No 94
>KOG0028|consensus
Probab=53.73 E-value=51 Score=22.81 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=30.9
Q ss_pred CCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHH
Q psy11356 18 ETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLF 63 (70)
Q Consensus 18 ~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~ 63 (70)
.|.||++++---+.|.-.....+.|.-.-.=.|-+|.|+|+..++.
T Consensus 47 ~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~ 92 (172)
T KOG0028|consen 47 AGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFR 92 (172)
T ss_pred CCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHH
Confidence 4788888876566666555555555555555677778888877654
No 95
>PRK13704 plasmid SOS inhibition protein A; Provisional
Probab=53.62 E-value=14 Score=26.79 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.5
Q ss_pred HHHHHHHHhccCCCCeecHHHHHhh
Q psy11356 41 ALQYLFRFLDIKHQGYLDTFTLFYF 65 (70)
Q Consensus 41 sl~y~FrilD~dgdG~Ls~~eL~~F 65 (70)
=.+-|||+| +|.|-||..||..|
T Consensus 40 Ya~aFfr~L--tGs~rI~~~dvr~~ 62 (240)
T PRK13704 40 YAKAFFRCL--NGSRRISLSDLRFF 62 (240)
T ss_pred HHHHHHHHh--cCCCcccHHHHHHh
Confidence 357799996 79999999999765
No 96
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=52.77 E-value=20 Score=21.71 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 27 LDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 27 v~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
|.|.++.+|-.+. .|+.+.++-+.+|++....|..|-|
T Consensus 13 vEfYFSd~NL~~D---~fL~~~~~~~~dG~Vpl~~i~~F~r 50 (82)
T cd08032 13 VDFWFGDVNLHKD---RFLREQIEKSRDGYIDISLLVSFNK 50 (82)
T ss_pred HHhhcchhhcccC---HHHHHHhcCCCCCCEeHHHHhcchH
Confidence 4566777776554 5888999999999999999988854
No 97
>PF05901 Excalibur: Excalibur calcium-binding domain; InterPro: IPR008613 Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated [].
Probab=50.48 E-value=7.3 Score=20.03 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=7.1
Q ss_pred hccCCCCe
Q psy11356 49 LDIKHQGY 56 (70)
Q Consensus 49 lD~dgdG~ 56 (70)
||.|+||+
T Consensus 27 LDrD~DGi 34 (37)
T PF05901_consen 27 LDRDGDGI 34 (37)
T ss_pred ccCCCCCC
Confidence 79999997
No 98
>KOG0038|consensus
Probab=50.46 E-value=24 Score=24.46 Aligned_cols=29 Identities=10% Similarity=0.416 Sum_probs=22.4
Q ss_pred hhhHHHHHhhc-cCCCCcccHHHHHHHHhh
Q psy11356 4 SIVTKELLTEC-LTFETQMDYKTYLDFVLS 32 (70)
Q Consensus 4 ~~~i~RiF~~~-~~~~g~mdy~~Fv~fvla 32 (70)
..+++||.+++ +..+|++++.+|-+-++-
T Consensus 148 ~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 148 ELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 36788999888 556789999998877653
No 99
>PF06952 PsiA: PsiA protein; InterPro: IPR009713 This family consists of several Enterobacterial PsiA proteins. The function of PsiA is unknown although it is thought that it may affect the generation of an SOS signal in Escherichia coli [].
Probab=49.15 E-value=15 Score=26.64 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.7
Q ss_pred HHHHHHHHhccCCCCeecHHHHHhh
Q psy11356 41 ALQYLFRFLDIKHQGYLDTFTLFYF 65 (70)
Q Consensus 41 sl~y~FrilD~dgdG~Ls~~eL~~F 65 (70)
=.+-|||+| +|.|-|+..+|+.+
T Consensus 40 ya~aFfR~L--~G~~rI~~~dlr~i 62 (238)
T PF06952_consen 40 YARAFFRVL--NGSGRISSKDLRQI 62 (238)
T ss_pred hHHHHHHHh--cCCCccchhhhhhc
Confidence 357799996 99999999999865
No 100
>KOG2643|consensus
Probab=48.83 E-value=4.8 Score=31.74 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=19.1
Q ss_pred HHHHHHHHhccCCCCeecHHHHH
Q psy11356 41 ALQYLFRFLDIKHQGYLDTFTLF 63 (70)
Q Consensus 41 sl~y~FrilD~dgdG~Ls~~eL~ 63 (70)
-+.-.|+|+|.|+||.||..|.-
T Consensus 426 VvdvvF~IFD~N~Dg~LS~~EFl 448 (489)
T KOG2643|consen 426 VVDVVFTIFDENNDGTLSHKEFL 448 (489)
T ss_pred eeeeEEEEEccCCCCcccHHHHH
Confidence 45567999999999999988753
No 101
>KOG2557|consensus
Probab=48.61 E-value=37 Score=26.45 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=44.1
Q ss_pred CcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhhcc
Q psy11356 19 TQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKID 69 (70)
Q Consensus 19 g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~~ 69 (70)
..|.++.++--....|-.+..|-.+.+.--+|++|+|.++...++.|+.+.
T Consensus 73 ~~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 73 DKMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred ccchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 379999998877777777778888999999999999999999999998653
No 102
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=48.49 E-value=19 Score=28.75 Aligned_cols=38 Identities=32% Similarity=0.586 Sum_probs=21.1
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHhccCC--CCeecHHHH
Q psy11356 25 TYLDFVLSLENKHEPQALQYLFRFLDIKH--QGYLDTFTL 62 (70)
Q Consensus 25 ~Fv~fvla~e~k~~~~sl~y~FrilD~dg--dG~Ls~~eL 62 (70)
++..-+++..+..-|.||+|+|..||-.. -|+-++..+
T Consensus 371 dlf~si~s~~~~~~P~aIKY~FDfLDeqA~k~~i~Dpev~ 410 (539)
T PF08337_consen 371 DLFESIFSVRNSKLPLAIKYFFDFLDEQAEKHGITDPEVL 410 (539)
T ss_dssp HHHHHHT-SCCCB--HHHHHHHHHHHHHHHTTT---HHHH
T ss_pred HHHHHHhcCCCCCCCccHHHHhcccHHHHHhcCCCCcchh
Confidence 34445555545556999999999999643 565444433
No 103
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=46.51 E-value=8.9 Score=19.33 Aligned_cols=9 Identities=33% Similarity=0.445 Sum_probs=6.9
Q ss_pred hccCCCCee
Q psy11356 49 LDIKHQGYL 57 (70)
Q Consensus 49 lD~dgdG~L 57 (70)
-|+||||+-
T Consensus 8 gD~ngDG~~ 16 (34)
T PF01839_consen 8 GDFNGDGYD 16 (34)
T ss_dssp ESTSSSSS-
T ss_pred EEcCCCCCc
Confidence 489999974
No 104
>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands []. Two ribosomal proteins, S17 and S1, are members of this class, and have different variations of the OB fold theme. Comparisons with other OB fold nucleic acid binding proteins suggest somewhat different mechanisms of nucleic acid recognition in each case []. There are many nucleic acid-binding proteins that contain domains with this OB-fold structure, including anticodon-binding tRNA synthetases, ssDNA-binding proteins (CDC13, telomere-end binding proteins), phage ssDNA-binding proteins (gp32, gp2.5, gpV), cold shock proteins, DNA ligases, RNA-capping enzymes, DNA replication initiators and RNA polymerase subunit RBP8 []. This entry represents the RNA-binding domain of translation elongation factor IF5A [].; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0043022 ribosome binding, 0006452 translational frameshifting, 0045901 positive regulation of translational elongation, 0045905 positive regulation of translational termination; PDB: 1IZ6_B 3CPF_A 1KHI_A 1BKB_A 1XTD_A 3ER0_A 3HKS_B 1X6O_A 2EIF_A 1EIF_A.
Probab=45.67 E-value=2.7 Score=24.66 Aligned_cols=15 Identities=27% Similarity=0.700 Sum_probs=11.8
Q ss_pred HHhccCCCCeecHHH
Q psy11356 47 RFLDIKHQGYLDTFT 61 (70)
Q Consensus 47 rilD~dgdG~Ls~~e 61 (70)
.++|+++||+++..+
T Consensus 8 qli~I~~Dg~lsLMd 22 (69)
T PF01287_consen 8 QLIDIDGDGFLSLMD 22 (69)
T ss_dssp EEEEEETTTEEEEEE
T ss_pred EEEEEccCcEEEEEc
Confidence 478999999987543
No 105
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=43.00 E-value=31 Score=22.12 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=33.7
Q ss_pred HHHHHhhccC---CCCcccHHHHHHHHhhh------cCCCC---h---------HHHHHHHHHhccCCCCeecHHHHH
Q psy11356 7 TKELLTECLT---FETQMDYKTYLDFVLSL------ENKHE---P---------QALQYLFRFLDIKHQGYLDTFTLF 63 (70)
Q Consensus 7 i~RiF~~~~~---~~g~mdy~~Fv~fvla~------e~k~~---~---------~sl~y~FrilD~dgdG~Ls~~eL~ 63 (70)
+..+|.++.- .+..++..+....+... +.+.. | -.+.|.+.++|.+++|.|+...+.
T Consensus 43 v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~K 120 (127)
T PF09068_consen 43 VIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFK 120 (127)
T ss_dssp HHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHH
T ss_pred HHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHH
Confidence 3456666622 24567777776555433 22221 1 357899999999999999987765
No 106
>KOG4251|consensus
Probab=41.84 E-value=20 Score=26.83 Aligned_cols=57 Identities=9% Similarity=0.115 Sum_probs=38.2
Q ss_pred HHHHHhhc-cCCCCcccHHHHHHHHh---hhcCCCChHHHHHHHHHhccCCCCeecHHHHH
Q psy11356 7 TKELLTEC-LTFETQMDYKTYLDFVL---SLENKHEPQALQYLFRFLDIKHQGYLDTFTLF 63 (70)
Q Consensus 7 i~RiF~~~-~~~~g~mdy~~Fv~fvl---a~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~ 63 (70)
+--||+.. ++.+|+++-++.-..+. |+.......--+-+||+.|-||||-++=.|-.
T Consensus 103 lmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 103 LMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhh
Confidence 33467654 66678888888766553 22222223334678999999999999877654
No 107
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=41.36 E-value=37 Score=20.25 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=28.4
Q ss_pred HHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 27 LDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 27 v~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
|.|.++.+|-... .|+.+.+.-|.+|++....|..|-|
T Consensus 8 vEfYFSd~NL~~D---~fL~~~~~~~~dG~Vpl~~i~~F~r 45 (77)
T cd08033 8 VEYYFSDENLLKD---AFLLKHVRRNKEGYVPIKLIASFKK 45 (77)
T ss_pred HHhhcCHhhhccC---HHHHHHhccCCCCcEehHHHhcchH
Confidence 4566666666544 4777888789999999999988854
No 108
>KOG0037|consensus
Probab=41.35 E-value=1.2e+02 Score=21.84 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=30.7
Q ss_pred CCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHh
Q psy11356 18 ETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFY 64 (70)
Q Consensus 18 ~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~ 64 (70)
.|+|++++|..+--.. ++-+-.|+=.|.|+-|-|+..||..
T Consensus 108 ~G~i~f~EF~~Lw~~i------~~Wr~vF~~~D~D~SG~I~~sEL~~ 148 (221)
T KOG0037|consen 108 SGTIGFKEFKALWKYI------NQWRNVFRTYDRDRSGTIDSSELRQ 148 (221)
T ss_pred CCccCHHHHHHHHHHH------HHHHHHHHhcccCCCCcccHHHHHH
Confidence 4889999986554332 3456678889999999999998864
No 109
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=39.85 E-value=30 Score=20.30 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=26.9
Q ss_pred HHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 27 LDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 27 v~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
|.|.++.+|-... .|+.+.+ +.+|++....|..|-|
T Consensus 8 vEfYFSd~NL~~D---~fL~~~~--~~~g~Vpl~~i~~F~r 43 (75)
T cd07323 8 VEYYFSDENLCKD---RFLRSLM--DDDGWVPLSLLASFNR 43 (75)
T ss_pred hHhccCHhhhCcC---HHHHHhc--CCCCCEEHHHHhCchH
Confidence 5667777776655 4666676 8899999999988754
No 110
>KOG3719|consensus
Probab=38.72 E-value=6.3 Score=31.90 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.9
Q ss_pred HHHHHHhccCCCCeecHHHHHhhh
Q psy11356 43 QYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 43 ~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
-|||+|||-+|. +.|+.||..=+
T Consensus 225 ~Y~~~VLDs~g~-i~tp~el~~~l 247 (638)
T KOG3719|consen 225 FYAFDVLDSDGK-IYTPEELTAIL 247 (638)
T ss_pred eEEEEEecCCCc-CcCHHHHHHHH
Confidence 599999999999 99999987544
No 111
>KOG4347|consensus
Probab=36.82 E-value=30 Score=28.48 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.2
Q ss_pred HHHHHHHHHhccCCCCeecHHHH
Q psy11356 40 QALQYLFRFLDIKHQGYLDTFTL 62 (70)
Q Consensus 40 ~sl~y~FrilD~dgdG~Ls~~eL 62 (70)
-=+++.||.+|-.++|.||-.++
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~l 577 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDL 577 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHH
Confidence 44789999999999999998775
No 112
>KOG4403|consensus
Probab=36.81 E-value=24 Score=28.13 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=32.9
Q ss_pred cCCCChHHHHHHHHHhccCCCCeecHHHHHhhhhccC
Q psy11356 34 ENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKIDM 70 (70)
Q Consensus 34 e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~~~ 70 (70)
++|=.-.||+=+-|-+|=|.+|=|+..|=..|-||.|
T Consensus 62 ~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdm 98 (575)
T KOG4403|consen 62 QDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDM 98 (575)
T ss_pred cchhhHHHHHHHHHhcccccCCCcccccchHHHHHHh
Confidence 4455568999999999999999999999999999987
No 113
>KOG1029|consensus
Probab=36.62 E-value=15 Score=31.26 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=18.8
Q ss_pred HHHHHHHHHhccCCCCeecHHH
Q psy11356 40 QALQYLFRFLDIKHQGYLDTFT 61 (70)
Q Consensus 40 ~sl~y~FrilD~dgdG~Ls~~e 61 (70)
..|.-+|.+-|+||||.|+.+|
T Consensus 229 ~~LA~IW~LsDvd~DGkL~~dE 250 (1118)
T KOG1029|consen 229 NQLAHIWTLSDVDGDGKLSADE 250 (1118)
T ss_pred hhHhhheeeeccCCCCcccHHH
Confidence 3467789999999999999887
No 114
>TIGR01894 cas_TM1795_cmr1 CRISPR-associated RAMP protein, Cmr1 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents the region of stongest conservation, the N-terminal half, of one such family, represented by TM1795 from Thermotoga maritima. This protein is the first of a set of six genes, mostly from the RAMP superfamily, that we designated the CRISPR-associated RAMP module.
Probab=36.29 E-value=23 Score=23.59 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=10.2
Q ss_pred hHHHHHHHHHhc
Q psy11356 39 PQALQYLFRFLD 50 (70)
Q Consensus 39 ~~sl~y~FrilD 50 (70)
.-+++||||.+=
T Consensus 26 kG~lR~W~Ra~~ 37 (153)
T TIGR01894 26 KGLLRWWFRALI 37 (153)
T ss_pred hhHHHHHHHHHh
Confidence 478999999974
No 115
>PHA03379 EBNA-3A; Provisional
Probab=36.08 E-value=39 Score=28.39 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=23.3
Q ss_pred HHhhccCCCCcccHHHHHHHHhhhcCCCChHHHHHHHH
Q psy11356 10 LLTECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFR 47 (70)
Q Consensus 10 iF~~~~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~Fr 47 (70)
|.++-.+.+..++|-+|+-++ .|.+-+.|+|||+
T Consensus 262 IW~~vLtpeQRvsFmeFmG~L----qktDn~~Ik~Wf~ 295 (935)
T PHA03379 262 IWEEVLTPDQRVPFMEFLGFL----QRTDLIYIKSFVS 295 (935)
T ss_pred HHhhccChhhhhhHHHHHHHH----hccCcHHHHHHHH
Confidence 344444444678888888777 4556688999996
No 116
>KOG0039|consensus
Probab=35.81 E-value=48 Score=26.68 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=30.8
Q ss_pred ccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhh
Q psy11356 21 MDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYF 65 (70)
Q Consensus 21 mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F 65 (70)
+++.++. .-+.+-.++++-||.+.|. ++|.++..++...
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~ 42 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVREL 42 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHH
Confidence 5666655 4455668999999999999 9999999887653
No 117
>PHA03378 EBNA-3B; Provisional
Probab=35.58 E-value=40 Score=28.53 Aligned_cols=24 Identities=13% Similarity=0.472 Sum_probs=17.8
Q ss_pred cccHHHHHHHHhhhcCCCChHHHHHHHH
Q psy11356 20 QMDYKTYLDFVLSLENKHEPQALQYLFR 47 (70)
Q Consensus 20 ~mdy~~Fv~fvla~e~k~~~~sl~y~Fr 47 (70)
.++|-+|+-++ .|.+.++|+|||+
T Consensus 278 RVaFveFmG~L----~k~d~~~Ik~Wf~ 301 (991)
T PHA03378 278 RVAFVEFVGWL----CKKDHTHIREWFR 301 (991)
T ss_pred hhHHHHHHHHH----hccccHHHHHHHH
Confidence 67777776665 4566789999997
No 118
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=35.38 E-value=19 Score=24.72 Aligned_cols=21 Identities=33% Similarity=0.167 Sum_probs=17.5
Q ss_pred HhccCCCCeecHHHHHhhhhc
Q psy11356 48 FLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 48 ilD~dgdG~Ls~~eL~~F~~~ 68 (70)
=+|.|+||.++..|+...-++
T Consensus 58 ~~D~~~dg~~~~~el~~l~~~ 78 (212)
T PF06226_consen 58 GLDKDGDGKLDPEELAALAKE 78 (212)
T ss_pred hhhhcccCCCCHHHHHHHHHH
Confidence 479999999999999876554
No 119
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=35.01 E-value=4.5 Score=25.67 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=16.1
Q ss_pred HHHHHHhccCCCCeecHHHH
Q psy11356 43 QYLFRFLDIKHQGYLDTFTL 62 (70)
Q Consensus 43 ~y~FrilD~dgdG~Ls~~eL 62 (70)
.||+|++|+.+.|+|=..||
T Consensus 42 sy~lrl~D~~~~~v~weqEl 61 (105)
T cd01205 42 SYFIRLFDIKANRIIWEQEL 61 (105)
T ss_pred EEEEEEEEccCCcEEEEEEc
Confidence 49999999999888755544
No 120
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=33.38 E-value=41 Score=15.40 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=15.1
Q ss_pred CCChHHHHHHHHHhccCCC
Q psy11356 36 KHEPQALQYLFRFLDIKHQ 54 (70)
Q Consensus 36 k~~~~sl~y~FrilD~dgd 54 (70)
+....|++++-++++++.|
T Consensus 15 ~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 15 GDYEEALEYFEKALELNPD 33 (34)
T ss_dssp TSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhhCCC
Confidence 3458999999999988764
No 121
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.13 E-value=50 Score=19.39 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=26.4
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHhccCCCCe
Q psy11356 26 YLDFVLSLENKHEPQALQYLFRFLDIKHQGY 56 (70)
Q Consensus 26 Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~ 56 (70)
|+.++-+...++-+.|++.+-|.+|.-....
T Consensus 2 ~l~~~~~~~~~dy~~A~d~L~~~fD~~~~~~ 32 (94)
T PF12862_consen 2 YLRYLNALRSGDYSEALDALHRYFDYAKQSN 32 (94)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcc
Confidence 6788889999999999999999999866444
No 122
>KOG1707|consensus
Probab=31.76 E-value=46 Score=27.23 Aligned_cols=27 Identities=26% Similarity=0.296 Sum_probs=22.6
Q ss_pred HHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 42 LQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 42 l~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
+.-.|--.|.|+||-|++.|+..-|+.
T Consensus 317 l~~~f~~~D~d~Dg~L~p~El~~LF~~ 343 (625)
T KOG1707|consen 317 LVDVFEKFDRDNDGALSPEELKDLFST 343 (625)
T ss_pred HHHHHHhccCCCCCCcCHHHHHHHhhh
Confidence 444688899999999999999887764
No 123
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=31.53 E-value=56 Score=19.68 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=26.2
Q ss_pred HHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 27 LDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 27 v~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
|.|.++.+|-..- +|+.+.++-+ +|++....|..|-|
T Consensus 12 vEfYFSd~NL~~D---~fLr~~m~~~-~G~Vpl~~i~~F~r 48 (82)
T cd08028 12 IEYYFGDFNLPRD---KFLKEQIKED-DGWVPMEVMLKFNR 48 (82)
T ss_pred HHhhcCHhhhccC---HHHHHHHhcc-CCCEEhHHHhCChh
Confidence 4555666665443 4677777765 99999999988865
No 124
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=30.47 E-value=7.9 Score=27.38 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=10.7
Q ss_pred HHHHHhccCCCCee
Q psy11356 44 YLFRFLDIKHQGYL 57 (70)
Q Consensus 44 y~FrilD~dgdG~L 57 (70)
=||.|||+-..|+|
T Consensus 60 ~Ww~ILDvTQTGVl 73 (230)
T PF12226_consen 60 DWWNILDVTQTGVL 73 (230)
T ss_dssp EEEEEEE-TTT-EE
T ss_pred cceeeeeeeecceE
Confidence 39999999999987
No 125
>KOG0751|consensus
Probab=29.10 E-value=2.2e+02 Score=23.46 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=38.2
Q ss_pred HHHhhc--cCCCCcccHHHHHHHHhhhcCCCChHH-HHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 9 ELLTEC--LTFETQMDYKTYLDFVLSLENKHEPQA-LQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 9 RiF~~~--~~~~g~mdy~~Fv~fvla~e~k~~~~s-l~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
|+-+.. .+.+|-++|.+|+.|=.- +-.|.+ -+-.|.++|..|+|-+|-.+...-|+
T Consensus 77 ~Lla~iaD~tKDglisf~eF~afe~~---lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~ 135 (694)
T KOG0751|consen 77 RLLASIADQTKDGLISFQEFRAFESV---LCAPDALFEVAFQLFDRLGNGEVSFEDVADIFG 135 (694)
T ss_pred HHHHhhhhhcccccccHHHHHHHHhh---ccCchHHHHHHHHHhcccCCCceehHHHHHHHh
Confidence 444433 456899999999866322 234443 35679999999999998887765544
No 126
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=29.07 E-value=77 Score=18.75 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=25.0
Q ss_pred HHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 27 LDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 27 v~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
|.|.++.+|-... +|+.+.+ +.+|++....|..|-|
T Consensus 8 vEfYFSd~NL~~D---~fL~~~m--~~dG~Vpl~~i~~F~r 43 (75)
T cd08031 8 LEYYFSRENLAND---AYLLSQM--DSDQYVPIWTIANFNK 43 (75)
T ss_pred HHHHcCHhhhccC---HHHHHHh--CCCCCEEHHHHhCchh
Confidence 4566666666544 3555665 4789999999988865
No 127
>PLN02228 Phosphoinositide phospholipase C
Probab=28.15 E-value=2.7e+02 Score=22.52 Aligned_cols=62 Identities=16% Similarity=0.361 Sum_probs=40.1
Q ss_pred hhhHHHHHhhccCCCCcccHHHHHHHHhhhcCC--CChHHHHHHHHHhccC----CCCeecHHHHHhhh
Q psy11356 4 SIVTKELLTECLTFETQMDYKTYLDFVLSLENK--HEPQALQYLFRFLDIK----HQGYLDTFTLFYFF 66 (70)
Q Consensus 4 ~~~i~RiF~~~~~~~g~mdy~~Fv~fvla~e~k--~~~~sl~y~FrilD~d----gdG~Ls~~eL~~F~ 66 (70)
|.=|.+||..+.. ++.|+.++|..|+-..-.. .+.+..+-+++-+--. ..|.++......|.
T Consensus 23 ~~ei~~if~~~s~-~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 23 PVSIKRLFEAYSR-NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred cHHHHHHHHHhcC-CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 4558899988743 3689999999999776332 3345555555554322 34677777665553
No 128
>smart00684 DM15 Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function.
Probab=28.00 E-value=72 Score=16.72 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHh
Q psy11356 23 YKTYLDFVLSLENKHEPQALQYLFRFL 49 (70)
Q Consensus 23 y~~Fv~fvla~e~k~~~~sl~y~Fril 49 (70)
|++|-...+....+..++.++..||-.
T Consensus 7 Y~eFr~laled~~~~~~~gm~~LfRFw 33 (39)
T smart00684 7 YEEFRQLCLEDRKSLGRYELNCLYRFW 33 (39)
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 788888777766666688888888754
No 129
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=26.96 E-value=1.3e+02 Score=20.82 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=31.1
Q ss_pred cCCCChHHHHHHHHHhccCCCCeecHHHHHhhhhcc
Q psy11356 34 ENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKID 69 (70)
Q Consensus 34 e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~~ 69 (70)
|.+=.|+..+-.|.-++..+.+.||..|+..--++|
T Consensus 90 eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 90 EGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred CCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 344468999999999999999999999999887765
No 130
>KOG1954|consensus
Probab=26.69 E-value=39 Score=26.77 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.1
Q ss_pred HHHHHHHHHhccCCCCeecHHHH
Q psy11356 40 QALQYLFRFLDIKHQGYLDTFTL 62 (70)
Q Consensus 40 ~sl~y~FrilD~dgdG~Ls~~eL 62 (70)
.-+--.|++-|+|.||.|+..|.
T Consensus 477 svlgkiwklad~d~dg~ld~eef 499 (532)
T KOG1954|consen 477 SVLGKIWKLADIDKDGMLDDEEF 499 (532)
T ss_pred hHHHhhhhhhcCCcccCcCHHHH
Confidence 55778999999999999998874
No 131
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Probab=26.63 E-value=12 Score=22.45 Aligned_cols=13 Identities=38% Similarity=0.767 Sum_probs=10.0
Q ss_pred HHHhccCCCCeecH
Q psy11356 46 FRFLDIKHQGYLDT 59 (70)
Q Consensus 46 FrilD~dgdG~Ls~ 59 (70)
|+++|+ .||++|.
T Consensus 5 YqLidI-~DG~lsL 17 (75)
T cd04469 5 YRVLDI-QDGSIVA 17 (75)
T ss_pred EEEEEe-cCCeEEE
Confidence 457899 7899884
No 132
>PHA03377 EBNA-3C; Provisional
Probab=26.47 E-value=75 Score=27.05 Aligned_cols=26 Identities=19% Similarity=0.539 Sum_probs=19.0
Q ss_pred CCcccHHHHHHHHhhhcCCCChHHHHHHHH
Q psy11356 18 ETQMDYKTYLDFVLSLENKHEPQALQYLFR 47 (70)
Q Consensus 18 ~g~mdy~~Fv~fvla~e~k~~~~sl~y~Fr 47 (70)
+..++|-+|+-++ .|.+.++|+|||+
T Consensus 282 eqrv~FvrFmG~L----~k~dn~~Ik~Wf~ 307 (1000)
T PHA03377 282 ENLLDFVRFMGVM----SSCNNPAVNYWFH 307 (1000)
T ss_pred HHhhhHHHHHHHh----hccCcHHHHHHHH
Confidence 4567777777766 4555688999996
No 133
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=26.19 E-value=75 Score=18.78 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=27.9
Q ss_pred HHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 27 LDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 27 v~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
|.|.++.+|-..- .|+-+.+.-+.+|++....|..|=|
T Consensus 8 vEfYFSd~NL~~D---~fLr~~~~~~~~G~Vpl~~i~~F~r 45 (76)
T cd08029 8 VEFYFSDSNLPTD---KFLWTLTGGSNNGWVPIKTIASFKR 45 (76)
T ss_pred HHhhcCHhhhccC---HHHHHHhccCCCCcEehHHHhCchH
Confidence 4456666665544 4677788889999999999988854
No 134
>PF05009 EBV-NA3: Epstein-Barr virus nuclear antigen 3 (EBNA-3); InterPro: IPR007706 This family contains EBNA-3A, -3B, and -3C which are latent infection nuclear proteins important for Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)-induced B-cell immortalisation and the immune response to EBVG infection. ; GO: 0016032 viral reproduction, 0042025 host cell nucleus; PDB: 3SJV_H 3DXA_M.
Probab=25.45 E-value=19 Score=26.28 Aligned_cols=29 Identities=17% Similarity=0.562 Sum_probs=1.6
Q ss_pred cCCCCcccHHHHHHHHhhhcCCCChHHHHHHHH
Q psy11356 15 LTFETQMDYKTYLDFVLSLENKHEPQALQYLFR 47 (70)
Q Consensus 15 ~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~Fr 47 (70)
.+.+.-++|-+|+-++ .|.+.++|+|||+
T Consensus 130 l~~dqrv~Fv~F~G~l----~~~d~~~i~~wf~ 158 (255)
T PF05009_consen 130 LQPDQRVSFVEFMGWL----QKCDNPAIKYWFH 158 (255)
T ss_dssp -------SS------------------------
T ss_pred CChhhhhhHHHHHHHH----hcCCcHHHHHHHH
Confidence 3345568888887776 4555678999985
No 135
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=25.24 E-value=23 Score=23.42 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=11.0
Q ss_pred HHHhccCCCCeec
Q psy11356 46 FRFLDIKHQGYLD 58 (70)
Q Consensus 46 FrilD~dgdG~Ls 58 (70)
..+.|+||||..+
T Consensus 27 ~~~~DinGdG~~d 39 (175)
T PF12256_consen 27 VSVADINGDGTAD 39 (175)
T ss_pred EEEEEeCCCCCEE
Confidence 6779999999865
No 136
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=24.57 E-value=1.1e+02 Score=15.59 Aligned_cols=36 Identities=6% Similarity=0.124 Sum_probs=21.0
Q ss_pred hHHHHHhhccCCCCcccHHHHHHHHhhhcCCCChHHHHHHHH
Q psy11356 6 VTKELLTECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFR 47 (70)
Q Consensus 6 ~i~RiF~~~~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~Fr 47 (70)
++.+.|+.+. +.+.-.... +|.+-.-++..|+.||.
T Consensus 14 ~L~~~f~~~~-~P~~~~~~~-----la~~~~l~~~qV~~WF~ 49 (56)
T smart00389 14 ELEKEFQKNP-YPSREEREE-----LAAKLGLSERQVKVWFQ 49 (56)
T ss_pred HHHHHHHhCC-CCCHHHHHH-----HHHHHCcCHHHHHHhHH
Confidence 4677777665 222222222 45555566788888885
No 137
>KOG0169|consensus
Probab=24.55 E-value=2.2e+02 Score=23.97 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=37.8
Q ss_pred HHHHHhhccC-CCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 7 TKELLTECLT-FETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 7 i~RiF~~~~~-~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
+.|+|.++.. ..+++....++.|--....+. .+...|.=+ .++.+++|..+|..|.++
T Consensus 174 ~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~-s~~~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 174 ARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQY-SHGKEYLSTDDLLRFLEE 232 (746)
T ss_pred HHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHH-hCCCCccCHHHHHHHHHH
Confidence 4567776622 246788888877765554444 444555432 555889999999888775
No 138
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=23.75 E-value=1.2e+02 Score=15.53 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=19.5
Q ss_pred hHHHHHhhccCCCCcccHHHHHHHHhhhcCCCChHHHHHHHH
Q psy11356 6 VTKELLTECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFR 47 (70)
Q Consensus 6 ~i~RiF~~~~~~~g~mdy~~Fv~fvla~e~k~~~~sl~y~Fr 47 (70)
++..+|+.++ +.+.-+..+ ||.+-.-++..|+.||+
T Consensus 14 ~Le~~f~~~~-~P~~~~~~~-----la~~~~l~~~qV~~WF~ 49 (59)
T cd00086 14 ELEKEFEKNP-YPSREEREE-----LAKELGLTERQVKIWFQ 49 (59)
T ss_pred HHHHHHHhCC-CCCHHHHHH-----HHHHHCcCHHHHHHHHH
Confidence 4566666643 222222222 44444566777888885
No 139
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=22.91 E-value=36 Score=21.71 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhccCCCCee
Q psy11356 39 PQALQYLFRFLDIKHQGYL 57 (70)
Q Consensus 39 ~~sl~y~FrilD~dgdG~L 57 (70)
-.++|=.|.. |+||||.|
T Consensus 91 ~~~~E~~F~q-DlNgDG~I 108 (109)
T PF07483_consen 91 LEQLETSFHQ-DLNGDGTI 108 (109)
T ss_pred HHHHHHHhCc-cccCCCcC
Confidence 3556666764 99999987
No 140
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=22.77 E-value=1.6e+02 Score=18.20 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=25.4
Q ss_pred CCcccHHHHHHHHhhhcCCCC-hHHHHHHHHHhcc
Q psy11356 18 ETQMDYKTYLDFVLSLENKHE-PQALQYLFRFLDI 51 (70)
Q Consensus 18 ~g~mdy~~Fv~fvla~e~k~~-~~sl~y~FrilD~ 51 (70)
....-=+++|+.++......+ ++|+.|+=+++|-
T Consensus 35 ~~cFvGsElVdWLi~~g~~~tR~eAv~~gq~Ll~~ 69 (93)
T cd04440 35 KSVVPASKLVDWLLAQGDCRTREEAVILGVGLCNN 69 (93)
T ss_pred ccccchhHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 344444688999998766656 8999999888864
No 141
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=22.73 E-value=93 Score=19.13 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=27.4
Q ss_pred HHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 27 LDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 27 v~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
|.|.++.+|-... +|+.+.+--|.+|++....|..|-|
T Consensus 9 vEfYFSd~NL~~D---~fL~~~~~~~~dG~V~i~~i~~F~r 46 (90)
T cd08030 9 VEFYFSDSNLPRD---DFLLEEVEEDPDGMVSLALICSFSR 46 (90)
T ss_pred HHcccchhhcccC---HHHHHHhccCCCCCEehHHHhcChH
Confidence 3455555555443 5777887778999999999988854
No 142
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=22.06 E-value=1.6e+02 Score=21.40 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=31.8
Q ss_pred CcccHHHHHHHHhhhcCCC-ChHHHHHHHHHhccCCCCeecHHHHHhhh
Q psy11356 19 TQMDYKTYLDFVLSLENKH-EPQALQYLFRFLDIKHQGYLDTFTLFYFF 66 (70)
Q Consensus 19 g~mdy~~Fv~fvla~e~k~-~~~sl~y~FrilD~dgdG~Ls~~eL~~F~ 66 (70)
.++|.++.....-...... +.+.++++|+++. + .|..+...|-
T Consensus 240 ~~id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~----~-~s~eer~~fL 283 (352)
T cd00078 240 EDIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLE----S-FTNEERKKFL 283 (352)
T ss_pred CCCCHHHHHhceEecCCCCCCCHHHHHHHHHHH----h-CCHHHHHHhh
Confidence 5899999888777666554 6788999999973 1 6666666553
No 143
>KOG0169|consensus
Probab=22.01 E-value=2.2e+02 Score=24.02 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=50.6
Q ss_pred hHHHHHhhccC-CCCcccHHHHHHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhhc
Q psy11356 6 VTKELLTECLT-FETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKI 68 (70)
Q Consensus 6 ~i~RiF~~~~~-~~g~mdy~~Fv~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~~ 68 (70)
-|.++|+++.+ .+|.|++.+=++++.-+...-....++-.|+=.|--++|-+...+...|+.+
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 36778887744 5799999999999888877766666677777778889999999999888865
No 144
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=21.72 E-value=1.4e+02 Score=20.65 Aligned_cols=28 Identities=7% Similarity=0.008 Sum_probs=24.4
Q ss_pred CCChHHHHHHHHHhccCCC-CeecHHHHH
Q psy11356 36 KHEPQALQYLFRFLDIKHQ-GYLDTFTLF 63 (70)
Q Consensus 36 k~~~~sl~y~FrilD~dgd-G~Ls~~eL~ 63 (70)
..++.+++=.......+|| |.||+.||+
T Consensus 61 ~P~~e~vk~V~e~a~~tgd~~~LS~tDi~ 89 (177)
T COG1439 61 EPSTEYVKEVREAAKKTGDLGNLSPTDIE 89 (177)
T ss_pred cCCHHHHHHHHHHHHhhCcccccChhhHH
Confidence 3567899999999999998 999999986
No 145
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=21.62 E-value=38 Score=17.96 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=7.7
Q ss_pred HHhccCCCCeec
Q psy11356 47 RFLDIKHQGYLD 58 (70)
Q Consensus 47 rilD~dgdG~Ls 58 (70)
.+-|+|+||.+.
T Consensus 47 ~~~D~d~DG~~D 58 (61)
T PF13517_consen 47 AFADIDGDGKPD 58 (61)
T ss_dssp CEE-SSSSSS-E
T ss_pred EEEEccCCCccc
Confidence 468999999764
No 146
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=21.24 E-value=1.3e+02 Score=17.75 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=25.1
Q ss_pred HHHHhhhcCCCChHHHHHHHHHhccCCCCeecHHHHHhhhh
Q psy11356 27 LDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 67 (70)
Q Consensus 27 v~fvla~e~k~~~~sl~y~FrilD~dgdG~Ls~~eL~~F~~ 67 (70)
|.|.++.+|-.... |+.+.+ |.+|++....|..|-|
T Consensus 8 vEyYFSd~NL~~D~---fLr~~m--d~dG~Vpi~~ia~F~r 43 (73)
T cd08037 8 IEYYFSVDNLERDF---FLRRKM--DEDGFLPVTLIASFHR 43 (73)
T ss_pred HHHhccHhhhccCH---HHHHHh--ccCCCEeHHHHhcchH
Confidence 45666777765553 444555 4789999999988865
No 147
>KOG3434|consensus
Probab=20.66 E-value=64 Score=21.27 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.8
Q ss_pred CCCeecHHHHHhhhhc
Q psy11356 53 HQGYLDTFTLFYFFKI 68 (70)
Q Consensus 53 gdG~Ls~~eL~~F~~~ 68 (70)
.||++++.+++.|.++
T Consensus 29 eDgI~d~A~fe~fLqe 44 (125)
T KOG3434|consen 29 EDGILDIADLEKFLQE 44 (125)
T ss_pred ccccccHHHHHHHHHH
Confidence 4899999999999876
No 148
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=20.41 E-value=53 Score=20.26 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=12.0
Q ss_pred ccCCCCeecHHHHHh
Q psy11356 50 DIKHQGYLDTFTLFY 64 (70)
Q Consensus 50 D~dgdG~Ls~~eL~~ 64 (70)
|=||.|.||++-|..
T Consensus 69 ddD~gGWITPsNIkq 83 (87)
T PF15017_consen 69 DDDGGGWITPSNIKQ 83 (87)
T ss_pred cCCCCccccchhhhh
Confidence 567889999988764
No 149
>TIGR03036 trp_2_3_diox tryptophan 2,3-dioxygenase. Members of this family are tryptophan 2,3-dioxygenase, as confirmed by several experimental characterizations, and by conserved operon structure for many of the other members. This enzyme represents the first of a two-step degradation to L-kynurenine, and a three-step pathway (via kynurenine) to anthranilate plus alanine.
Probab=20.11 E-value=2.1e+02 Score=20.87 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=24.2
Q ss_pred CCCcccHHHHH--HHHhhhcCCCCh-----------HHHHHHHHHh
Q psy11356 17 FETQMDYKTYL--DFVLSLENKHEP-----------QALQYLFRFL 49 (70)
Q Consensus 17 ~~g~mdy~~Fv--~fvla~e~k~~~-----------~sl~y~Fril 49 (70)
++|.++|.+|+ +-+++.-...++ |+-+-||+.+
T Consensus 2 ~~~~~~Y~~Yl~ld~LLslQ~p~s~~hDE~lFIv~HQ~~ELwfkli 47 (264)
T TIGR03036 2 FSGSMSYGDYLQLDTLLSAQHPLSDDHDEMLFIVQHQTSELWMKLI 47 (264)
T ss_pred CCCCCCHHHHHchHHHHhcCCCCCCCCchhhhHHHHHHHHHHHHHH
Confidence 35789999999 777877555332 7888888864
Done!