RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11356
         (70 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 1.6
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 20/62 (32%)

Query: 18  ETQMDYKTYLDFV----------LSLENKHEPQALQYLFRFLDIKH----------QGYL 57
           E +  Y+TY   V          LS   +    A +   + L+I            + YL
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231

Query: 58  DT 59
            +
Sbjct: 232 LS 233



 Score = 25.0 bits (54), Expect = 2.5
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 25/57 (43%)

Query: 9   ELLTECLTFETQMDYKTYLDFVLSLENKHEP----QALQYLFR-----FL---DIKH 53
           EL+ +            +L +V SL    +     Q L          +L   DI H
Sbjct: 59  ELVGK------------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-H 102


>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase,
           nonhomologous END joining (NHEJ), DNA damage, DNA
           repair, DNA replication, DNA synthesis; HET: DNA; NMR
           {Homo sapiens}
          Length = 106

 Score = 24.2 bits (52), Expect = 3.6
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 4   SIVTKELLTECLTFETQMDYKTYLDFV 30
            +V    L+ CL     +D   +  F+
Sbjct: 79  QLVKSAWLSLCLQERRLVDVAGFSIFI 105


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
          programmed cell death; HET: DTP; 6.90A {Drosophila
          melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 24.0 bits (51), Expect = 5.4
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 10/48 (20%)

Query: 15 LTFET-QMDYKTYLD--------FVLSLENKHEPQALQYLFRFLDIKH 53
          + FET +  Y+ Y D        FV + + K      + +    +I H
Sbjct: 7  MDFETGEHQYQ-YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH 53



 Score = 23.7 bits (50), Expect = 6.7
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 23/64 (35%)

Query: 2   SCSIVTKELLTECLTFETQMDYKTYLDFVLSLENKH-----------EPQALQYLFRFLD 50
           SC I    LLT      T+  +K   DF+ +    H             +    L ++LD
Sbjct: 265 SCKI----LLT------TR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 51  IKHQ 54
            + Q
Sbjct: 313 CRPQ 316


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.143    0.430 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,022,254
Number of extensions: 43869
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 20
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.9 bits)