BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1136
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 47 VALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCY 106
V LN+ +Y + ER Y +++++AD+I V+P+ ++ L+ W+ G LC
Sbjct: 23 VGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCL 82
Query: 107 F 107
F
Sbjct: 83 F 83
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 115 ERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
ER Y +++++AD+I V+P+ ++ L+ W+ G LC F
Sbjct: 36 ERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLF 83
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 37 ILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQ 96
+L + +L VA N+ I I + + T + ++A AD++ + V+P + +
Sbjct: 16 LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG 75
Query: 97 NWTWGSFLCYFLPMLQVM 114
W WGSFLC L V+
Sbjct: 76 TWLWGSFLCELWTSLDVL 93
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 125 YFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 160
+ ++A AD++ + V+P + + W WGSFLC
Sbjct: 49 FITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLC 84
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 37 ILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQ 96
+L + +L VA N+ I I + + T + ++A AD++ + V+P + +
Sbjct: 16 LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG 75
Query: 97 NWTWGSFLCYFLPMLQVM 114
W WGSFLC L V+
Sbjct: 76 TWLWGSFLCELWTSLDVL 93
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 125 YFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 160
+ ++A AD++ + V+P + + W WGSFLC
Sbjct: 49 FITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLC 84
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 20 DKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADI 79
+ HI P + V +Y V + G+ N ++ II + AT Y N+ALAD
Sbjct: 13 EPAHISPA---IPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADA 69
Query: 80 IKCMFVLPITLMVTLVQNWTWGSFLC 105
+ +P V L+ +W +G LC
Sbjct: 70 L-VTTTMPFQSTVYLMNSWPFGDVLC 94
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 119 RDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 160
+ AT Y N+ALAD + +P V L+ +W +G LC
Sbjct: 54 KTATNIYIFNLALADAL-VTTTMPFQSTVYLMNSWPFGDVLC 94
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 33 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITL-M 91
+F +Y + L+G+ N I + ++ R T Y +++++AD+ +FV+ +
Sbjct: 49 IFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL---LFVITLPFWA 105
Query: 92 VTLVQNWTWGSFLC 105
V V NW +G+FLC
Sbjct: 106 VDAVANWYFGNFLC 119
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 115 ERLFRDATCGYFINIALADIIKCMFVLPITL-MVTLVQNWTWGSFLC 160
++ R T Y +++++AD+ +FV+ + V V NW +G+FLC
Sbjct: 76 QKKLRSMTDKYRLHLSVADL---LFVITLPFWAVDAVANWYFGNFLC 119
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 33 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITL-M 91
+F +Y + L+G+ N I + ++ R T Y +++++AD+ +FV+ +
Sbjct: 49 IFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL---LFVITLPFWA 105
Query: 92 VTLVQNWTWGSFLC 105
V V NW +G+FLC
Sbjct: 106 VDAVANWYFGNFLC 119
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 115 ERLFRDATCGYFINIALADIIKCMFVLPITL-MVTLVQNWTWGSFLC 160
++ R T Y +++++AD+ +FV+ + V V NW +G+FLC
Sbjct: 76 QKKLRSMTDKYRLHLSVADL---LFVITLPFWAVDAVANWYFGNFLC 119
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 33 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITL-M 91
+F +Y + L+G+ N I + ++ R T Y +++++AD+ +FV+ +
Sbjct: 49 IFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL---LFVITLPFWA 105
Query: 92 VTLVQNWTWGSFLC 105
V V NW +G+FLC
Sbjct: 106 VDAVANWYFGNFLC 119
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 115 ERLFRDATCGYFINIALADIIKCMFVLPITL-MVTLVQNWTWGSFLC 160
++ R T Y +++++AD+ +FV+ + V V NW +G+FLC
Sbjct: 76 QKKLRSMTDKYRLHLSVADL---LFVITLPFWAVDAVANWYFGNFLC 119
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 38 LYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQN 97
LY G+ N+ ++ I+ + AT Y N+ALAD + LP L++
Sbjct: 20 LYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADAL-ATSTLPFQSAKYLMET 78
Query: 98 WTWGSFLC 105
W +G LC
Sbjct: 79 WPFGELLC 86
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 118 FRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 160
+ AT Y N+ALAD + LP L++ W +G LC
Sbjct: 45 LKTATNIYIFNLALADAL-ATSTLPFQSAKYLMETWPFGELLC 86
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 60 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
ERL YFI ++A AD++ + V+P L + WT+G+F C F + V+
Sbjct: 211 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVL 264
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 115 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
ERL YFI ++A AD++ + V+P L + WT+G+F C F
Sbjct: 211 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEF 257
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 29 LNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPI 88
L + V + LY + G+ N +Y I+ + AT Y N+ALAD + + LP
Sbjct: 122 LGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTL-VLLTLPF 180
Query: 89 TLMVTLVQNWTWGSFLC 105
L+ W +G+ LC
Sbjct: 181 QGTDILLGFWPFGNALC 197
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 60 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
ERL YFI ++A AD++ + V+P L + WT+G+F C F + V+
Sbjct: 34 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVL 87
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 115 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
ERL YFI ++A AD++ + V+P L + WT+G+F C F
Sbjct: 34 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEF 80
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 38 LYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQN 97
LY + + G+ N +Y I+ + AT Y N+ALAD + LP + L+
Sbjct: 23 LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATS-TLPFQSVNYLMGT 81
Query: 98 WTWGSFLC 105
W +G+ LC
Sbjct: 82 WPFGNILC 89
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 60 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
ERL YFI ++A AD++ + V+P L++ WT+G+F C F + V+
Sbjct: 38 ERL--QTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTSIDVL 91
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 115 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
ERL YFI ++A AD++ + V+P L++ WT+G+F C F
Sbjct: 38 ERL--QTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEF 84
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 60 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
ERL YFI ++A AD++ + V+P L++ WT+G+F C F + V+
Sbjct: 63 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVL 116
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 115 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
ERL YFI ++A AD++ + V+P L++ WT+G+F C F
Sbjct: 63 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF 109
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 60 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
ERL YFI ++A AD++ + V+P L++ WT+G+F C F + V+
Sbjct: 70 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVL 123
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 115 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
ERL YFI ++A AD++ + V+P L++ WT+G+F C F
Sbjct: 70 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF 116
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 60 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
ERL YFI ++A AD++ + V+P L++ WT+G+F C F + V+
Sbjct: 69 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVL 122
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 115 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
ERL YFI ++A AD++ + V+P L++ WT+G+F C F
Sbjct: 69 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF 115
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 60 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
ERL YFI ++A AD++ + V+P L++ WT+G+F C F + V+
Sbjct: 70 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVL 123
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 115 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
ERL YFI ++A AD++ + V+P L++ WT+G+F C F
Sbjct: 70 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF 116
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 60 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
ERL YFI ++A AD++ + V+P L++ WT+G+F C F + V+
Sbjct: 62 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVL 115
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 115 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
ERL YFI ++A AD++ + V+P L++ WT+G+F C F
Sbjct: 62 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF 108
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 60 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
ERL YFI ++A AD++ + V+P L++ WT+G+F C F + V+
Sbjct: 39 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVL 92
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 115 ERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
ERL YFI ++A AD++ + V+P L++ WT+G+F C F
Sbjct: 39 ERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF 85
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 40 GVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLV-QNW 98
GV ++S + LNI AI I++ + Y +++A AD++ + VLP + +W
Sbjct: 29 GVFVVS-LPLNIMAIVVFILKMKVKKPAVVYMLHLATADVL-FVSVLPFKISYYFSGSDW 86
Query: 99 TWGSFLCYFL 108
+GS LC F+
Sbjct: 87 QFGSELCRFV 96
>pdb|3HUM|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From
Staphylococcus Aureus Col In Complex With Cefotaxime
pdb|3HUM|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From
Staphylococcus Aureus Col In Complex With Cefotaxime
pdb|3HUN|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From
Staphylococcus Aureus Col In Complex With Ampicillin
pdb|3HUN|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From
Staphylococcus Aureus Col In Complex With Ampicillin
Length = 453
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 32 YVFFIILYGVTILSGVALNIFAIYHIIVERLFR 64
+ F I+ G +++G+AL I H+I+ RLFR
Sbjct: 422 HPLFTIIGGTCLVAGLAL----IVHMIINRLFR 450
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.335 0.146 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,453,010
Number of Sequences: 62578
Number of extensions: 152612
Number of successful extensions: 305
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 52
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 48 (23.1 bits)