RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1136
(167 letters)
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 36.3 bits (84), Expect = 0.004
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 36 IILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLV 95
I++Y G+ NI IY ++ + + Y +N+A++D++ M LP + ++
Sbjct: 44 IVVYSTIFFFGLVGNIIVIY-VLTKTKIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYIL 101
Query: 96 QNWTWGSFLCYFLPML 111
W++G F C + L
Sbjct: 102 FQWSFGEFACKIVSGL 117
Score = 32.1 bits (73), Expect = 0.12
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 125 YFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPML 166
Y +N+A++D++ M LP + ++ W++G F C + L
Sbjct: 77 YLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSGL 117
>gnl|CDD|109884 pfam00846, Hanta_nucleocap, Hantavirus nucleocapsid protein.
Length = 428
Score = 29.1 bits (65), Expect = 1.1
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 63 FRDATCGYF-INIALADIIKCMFVLPITLMVTLVQNWT-----WGSFLCYFLPMLQVMER 116
FR CG F I +II V+ + + V++W+ + C FLP +
Sbjct: 198 FRTIVCGLFPAQIKARNIISP--VMGVIGFLFFVKDWSDRIDQFLIEDCPFLPKTAAVSE 255
Query: 117 LFRDATCGYFIN 128
LF Y N
Sbjct: 256 LFLSTNRAYLRN 267
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 28.0 bits (63), Expect = 2.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 70 YFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
+ +N+A+AD++ + + P L + +W +G LC + L V+
Sbjct: 16 FLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Score = 27.3 bits (61), Expect = 4.3
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 125 YFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 160
+ +N+A+AD++ + + P L + +W +G LC
Sbjct: 16 FLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALC 51
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 27.6 bits (61), Expect = 3.3
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 19 EDKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALAD 78
E++ + +V F I+ Y + + G+ N+ I +IV+R F Y NIA++D
Sbjct: 15 EEECDFEMVNSDVNYFVIVFYILLFIFGLIGNVLVIAVLIVKR-FMFVVDVYLFNIAMSD 73
Query: 79 IIKCMFVLPITLMVTLVQNWTWGSFLC 105
++ +F P + L W +G F+C
Sbjct: 74 LM-LVFSFPFIIHNDL-NEWIFGEFMC 98
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 26.5 bits (59), Expect = 7.7
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 56 HIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQV 113
+ +E + +A GYF L ++ + V L Q+W G L P++ +
Sbjct: 105 TLALEGV--EALDGYFARY-LPQLVLAVIVPLAILAAVFPQDWISGLILLLTAPLIPI 159
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.335 0.146 0.477
Gapped
Lambda K H
0.267 0.0842 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,591,222
Number of extensions: 803402
Number of successful extensions: 1398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1384
Number of HSP's successfully gapped: 82
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (24.8 bits)