RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1136
(167 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 56.2 bits (136), Expect = 4e-10
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 31 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI-NIALADIIKCMFVLPIT 89
V + Y V +++ V N+ ++ I+ + R T YF+ N+A A+ F +
Sbjct: 31 QIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVT-NYFLVNLAFAEASMAAFNTVVN 89
Query: 90 LMVTLVQNWTWGSFLCYFLPMLQVM 114
+ W +G F C F +
Sbjct: 90 FTYAVHNEWYYGLFYCKFHNFFPIA 114
Score = 45.0 bits (107), Expect = 2e-06
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 125 YFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 167
YF+ N+A A+ F + + W +G F C F
Sbjct: 69 YFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFP 112
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 52.1 bits (125), Expect = 1e-08
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 31 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITL 90
+ V + LY + G+ N +Y I+ + AT Y N+ALAD + + LP
Sbjct: 124 LKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTL-VLLTLPFQG 182
Query: 91 MVTLVQNWTWGSFLCYFLPMLQVM 114
L+ W +G+ LC + +
Sbjct: 183 TDILLGFWPFGNALCKTVIAIDYY 206
Score = 39.4 bits (92), Expect = 3e-04
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 125 YFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 167
Y N+ALAD + + LP L+ W +G+ LC + +
Sbjct: 163 YIFNLALADTL-VLLTLPFQGTDILLGFWPFGNALCKTVIAID 204
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 48.6 bits (115), Expect = 2e-07
Identities = 20/97 (20%), Positives = 39/97 (40%)
Query: 18 NEDKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALA 77
+ P VF +++ G L + NI + I V R + + ++A A
Sbjct: 9 DNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACA 68
Query: 78 DIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
D+I +F + + + T++ W G +C L +
Sbjct: 69 DLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYV 105
Score = 34.7 bits (79), Expect = 0.009
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 125 YFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 160
YF+ ++A AD+I +F + + + T++ W G +C
Sbjct: 60 YFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVC 96
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 48.1 bits (114), Expect = 3e-07
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 22 PHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIK 81
P + + + LY + + G+ N +Y I+ + AT Y N+ALAD +
Sbjct: 7 PQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADAL- 65
Query: 82 CMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
LP + L+ W +G+ LC + +
Sbjct: 66 ATSTLPFQSVNYLMGTWPFGNILCKIVISIDYY 98
Score = 31.9 bits (72), Expect = 0.080
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 125 YFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 160
Y N+ALAD + LP + L+ W +G+ LC
Sbjct: 55 YIFNLALADAL-ATSTLPFQSVNYLMGTWPFGNILC 89
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 46.2 bits (109), Expect = 1e-06
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 33 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI-NIALADIIKCMFVLPITLM 91
V I+ + +L+ V N+ I I + T YFI ++A AD++ + V+P
Sbjct: 41 VGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVT-NYFITSLACADLVMGLAVVPFGAA 99
Query: 92 VTLVQNWTWGSFLC 105
L++ WT+G+F C
Sbjct: 100 HILMKMWTFGNFWC 113
Score = 33.5 bits (76), Expect = 0.022
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 125 YFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 160
YFI ++A AD++ + V+P L++ WT+G+F C
Sbjct: 77 YFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWC 113
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 46.3 bits (109), Expect = 1e-06
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 32 YVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI-NIALADIIKCMFVLPITL 90
+ ++ + Y IL+ V N ++ ER + T Y + ++A+AD++ V+P +
Sbjct: 38 HAYYALSYCALILAIVFGNGLVCMAVLKERALQTTT-NYLVVSLAVADLLVATLVMPWVV 96
Query: 91 MVTLV-QNWTWGSFLCYFLPMLQVM 114
+ + W + C L VM
Sbjct: 97 YLEVTGGVWNFSRICCDVFVTLDVM 121
Score = 31.7 bits (71), Expect = 0.10
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 113 VMERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLV-QNWTWGSFLC 160
+ ER + T Y + ++A+AD++ V+P + + + W + C
Sbjct: 64 LKERALQTTT-NYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICC 112
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 45.8 bits (108), Expect = 1e-06
Identities = 18/74 (24%), Positives = 37/74 (50%)
Query: 32 YVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLM 91
+ +++ L V LN+ +Y + ER Y +++++AD+I V+P+ ++
Sbjct: 8 LMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNIL 67
Query: 92 VTLVQNWTWGSFLC 105
L+ W+ G LC
Sbjct: 68 YLLMSKWSLGRPLC 81
Score = 32.7 bits (74), Expect = 0.040
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 125 YFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 160
+I ++++AD+I V+P+ ++ L+ W+ G LC
Sbjct: 45 LYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLC 81
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 45.8 bits (109), Expect = 2e-06
Identities = 14/84 (16%), Positives = 29/84 (34%)
Query: 31 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITL 90
+ + I+ G +N +Y + + R +N+A+AD+ TL
Sbjct: 37 QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL 96
Query: 91 MVTLVQNWTWGSFLCYFLPMLQVM 114
+L + +G C +
Sbjct: 97 YTSLHGYFVFGPTGCNLEGFFATL 120
Score = 33.5 bits (77), Expect = 0.025
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 125 YFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 167
+N+A+AD+ TL +L + +G C
Sbjct: 76 ILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFA 118
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 44.3 bits (104), Expect = 5e-06
Identities = 12/83 (14%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 33 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI-NIALADIIKCMFVLPITLM 91
+I + + + N+ + + + ++ T YF+ ++A ADI + +P +
Sbjct: 22 SVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVT-NYFVVSLAAADIAVGVLAIPFAIT 80
Query: 92 VTLVQNWTWGSFLCYFLPMLQVM 114
++ + C F+ ++
Sbjct: 81 IST--GFCAACHGCLFIACFVLV 101
Score = 29.7 bits (66), Expect = 0.42
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 125 YFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
YF+ ++A ADI + +P + ++ + C F
Sbjct: 58 YFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCLF 94
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 43.0 bits (101), Expect = 2e-05
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 31 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITL 90
+F +Y + L+G+ N I + ++ R T Y +++++AD++ + LP
Sbjct: 47 NKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLL-FVITLPF-W 104
Query: 91 MVTLVQNWTWGSFLCYFLPMLQVM 114
V V NW +G+FLC + ++ +
Sbjct: 105 AVDAVANWYFGNFLCKAVHVIYTV 128
Score = 31.0 bits (70), Expect = 0.17
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 125 YFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 160
Y +++++AD++ + LP V V NW +G+FLC
Sbjct: 86 YRLHLSVADLL-FVITLPF-WAVDAVANWYFGNFLC 119
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 42.4 bits (99), Expect = 2e-05
Identities = 12/97 (12%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 18 NEDKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALA 77
+D P + + +I + + + N+ + + + ++ T + +++A A
Sbjct: 19 KDDDDGAPPIMGSSV--YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAA 76
Query: 78 DIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQVM 114
DI + +P + ++ + C F+ ++
Sbjct: 77 DIAVGVLAIPFAITIST--GFCAACHGCLFIACFVLV 111
Score = 30.0 bits (67), Expect = 0.34
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 125 YFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 160
YF+ ++A ADI + +P + ++ + C
Sbjct: 68 YFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGC 102
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 41.8 bits (97), Expect = 5e-05
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 32 YVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI-NIALADIIKCMFVLPITL 90
+++ + + NIF + I + F YFI N+AL+D++ + L
Sbjct: 63 IKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPM-YYFIGNLALSDLLAGVAYTANLL 121
Query: 91 MVTLVQNWTWGSFLCYFLPMLQVM 114
+ + + + +
Sbjct: 122 L-SGATTYKLTPAQWFLREGSMFV 144
Score = 31.0 bits (69), Expect = 0.16
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 125 YFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
YFI N+AL+D++ + L+ + + +
Sbjct: 100 YFIGNLALSDLLAGVAYTANLLL-SGATTYKLTPAQWFL 137
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 39.9 bits (93), Expect = 2e-04
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 31 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMF-VLPIT 89
VY I G+ + G N IY + + + IN+A +D + P+
Sbjct: 33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLM 92
Query: 90 LMVTLVQNWTWGSFLCYF 107
+ ++ W +G C
Sbjct: 93 TISCFLKKWIFGFAACKV 110
Score = 29.9 bits (67), Expect = 0.44
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 125 YFINIALADIIKCMF-VLPITLMVTLVQNWTWGSFLCYF 162
+ IN+A +D + P+ + ++ W +G C
Sbjct: 72 FIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKV 110
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 39.5 bits (92), Expect = 2e-04
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 33 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI-NIALADIIKCMFVLPITLM 91
V I+ + +L+ V N+ I I + T YFI ++A AD++ + V+P
Sbjct: 183 VGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVT-NYFITSLACADLVMGLAVVPFGAA 241
Query: 92 VTLVQNWTWGSFLC 105
L + WT+G+F C
Sbjct: 242 HILTKTWTFGNFWC 255
Score = 29.5 bits (66), Expect = 0.53
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 125 YFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 160
YFI ++A AD++ + V+P L + WT+G+F C
Sbjct: 219 YFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWC 255
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 33.2 bits (76), Expect = 0.026
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 31 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI-NIALADIIKCMFVLPIT 89
+L + +L VA N+ I I + + T FI ++A AD++ + V+P
Sbjct: 10 WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLT-NLFITSLACADLVVGLLVVPFG 68
Query: 90 LMVTLVQNWTWGSFLCYFLPMLQVM 114
+ + W WGSFLC L V+
Sbjct: 69 ATLVVRGTWLWGSFLCELWTSLDVL 93
Score = 25.8 bits (57), Expect = 7.2
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 125 YFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 162
FI ++A AD++ + V+P + + W WGSFLC
Sbjct: 48 LFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCEL 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.3
Identities = 31/175 (17%), Positives = 49/175 (28%), Gaps = 78/175 (44%)
Query: 22 PHIKPTLLNVYVFFIILYGVT------ILSGVALNIFAIYHIIVERLFRDATCGYFINIA 75
P I L YV L G T L G + + + A IA
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL---VT------AVA-----IA 284
Query: 76 LAD-----------IIKCMF-------------VLPITLMVTLVQNWTWG----SFLCYF 107
D I +F LP +++ ++N S
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN---NEGVPS----- 336
Query: 108 LPMLQV----MERLFR--DATCGYF-----INIAL---ADIIKCMFVL---PITL 145
PML + E++ + T + + I+L A V+ P +L
Sbjct: 337 -PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK----NLVVSGPPQSL 386
Score = 26.6 bits (58), Expect = 5.6
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 57/121 (47%)
Query: 11 VRAKSRKNEDK-PHI--KPTLLNVYVFFIILYGVTILSGVALNIFAIYH---------II 58
+A S ++ + P K N + L + + +H +I
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRF----------------LPVASPFHSHLLVPASDLI 439
Query: 59 VERLFR---------------DATCGYFI-----NIALADIIKCMFVLPITLMVTLVQNW 98
+ L + D G + +I I+ C+ LP+ W
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI-SERIVDCIIRLPV--------KW 490
Query: 99 T 99
Sbjct: 491 E 491
>3gzs_A Uncharacterized SUSD superfamily protein; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI-2; 2.09A {Bacteroides
fragilis}
Length = 515
Score = 26.4 bits (57), Expect = 5.3
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 97 NWTWGSFLCYFLPMLQVMERLFRDATCGYFINIALADIIKCMFVLPIT 144
N+ + + ++R+ +D ALA IIK + T
Sbjct: 90 NYVYSFMVTDVYSPWMQIKRISQDEGTRNDEIYALAQIIKIAALHRTT 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.335 0.146 0.477
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,583,404
Number of extensions: 143342
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 38
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 54 (25.0 bits)