RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1136
         (167 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 16/125 (12%), Positives = 35/125 (28%)

Query: 31  VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITL 90
            +        + I+ G  +N   +Y  +  +  R       +N+A+AD+         TL
Sbjct: 36  QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL 95

Query: 91  MVTLVQNWTWGSFLCYFLPMLQVMERLFRDATCGYFINIALADIIKCMFVLPITLMVTLV 150
             +L   + +G   C        +       +           + K M          ++
Sbjct: 96  YTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIM 155

Query: 151 QNWTW 155
                
Sbjct: 156 GVAFT 160


>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal
           domain {Thermus thermophilus [TaxId: 274]}
          Length = 412

 Score = 24.3 bits (52), Expect = 9.0
 Identities = 7/16 (43%), Positives = 12/16 (75%), Gaps = 1/16 (6%)

Query: 105 CYFLPMLQVMERLFRD 120
            Y LP+++V+ERL  +
Sbjct: 35  TY-LPLIRVLERLRAE 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.335    0.146    0.477 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 651,256
Number of extensions: 28328
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 6
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 49 (23.1 bits)