BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11360
(940 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/70 (87%), Positives = 67/70 (95%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S RRAKALLDFERHDDDELGFRKND+ITIISQKDEHCW+GELNGL+GWFPAKFVE+L
Sbjct: 3 SGSSGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVL 62
Query: 594 DERSKQYSLA 603
DERSK+YS+A
Sbjct: 63 DERSKEYSIA 72
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 35/60 (58%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S R KAL F+ DDEL K D++ I +K+E W G LNG KG FPA +VE L
Sbjct: 3 SGSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEEL 62
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
Q KAL DFE +D ELGFR+ D+IT+ +Q DE+ + G L+G G+FP +V++L
Sbjct: 13 QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQVL 68
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S Q +AL DFE ++ ELGF++ D+IT+ +Q DE+ + G L+G G+FP +VE+L
Sbjct: 9 SDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEIL 66
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+AL DFE ++ ELGF++ D+IT+ +Q DE+ + G L+G G+FP +VE+L
Sbjct: 11 RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEIL 62
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+A+AL + D+ L F KNDVIT++ Q+D W GE+ G KGWFP +V+L+
Sbjct: 14 QAQALYPWRAKKDNHLNFNKNDVITVLEQQD-MWWFGEVQGQKGWFPKSYVKLI 66
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQY 600
A+AL D DD ELGF+ DVI ++ + W G + +GWFPA FV L R Q
Sbjct: 39 AEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRL---RVNQD 95
Query: 601 SLAGDDS 607
A DD+
Sbjct: 96 EPADDDA 102
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+A+AL + D+ L F K+D+IT++ Q+ E+ W GE++G +GWFP +V+++
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKSYVKII 64
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 537 RQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
R R A+AL DFE ++DELGFR +V+ ++ + W G L+ G FPA +V
Sbjct: 2 RVRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 55
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+AL DF + EL F++ DVIT+I++ D + W G+LN +G FP+ +V
Sbjct: 8 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+AL DF + EL F++ DVIT+I++ D + W G+LN +G FP+ +V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+AL DF + EL F++ DVIT+I++ D + W G+LN +G FP+ +V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+ L DFE + ELGF++ D+IT+ +Q DE+ + G ++G G+FP +VE++
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVI 58
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKFVE 591
+ KAL D++ DEL F++ D I I+ QKD W GELNG +GW PA +V+
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTI-IVHQKDPAGWWEGELNGKRGWVPANYVQ 56
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKFVE 591
+ KAL D++ DEL F++ D I I+ QKD W GELNG +GW PA +V+
Sbjct: 6 QVKALYDYDAQTGDELTFKEGDTI-IVHQKDPAGWWEGELNGKRGWVPANYVQ 57
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEH--CWIGELNGLKGWFPAKFVELL 593
+A AL F + +L FRK DVITI+ + D W G +NG +G FPA +VEL+
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL---KGWFPAKFV 590
S ++ RR K + D + +DDEL F + +VI + ++D+ WIG + G KG FP FV
Sbjct: 6 SGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
Query: 591 ELLDE 595
+L +
Sbjct: 66 HILSD 70
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S RAKAL ++ + +L F K DVI + Q DE+ + GE+NG+ G FPA VE++
Sbjct: 3 SGSSGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVI 62
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQK--DEHCWIGELNGLKGWFPAKFVELL 593
K + +E +DDEL ++ D++T+I++ D W GELNG +G FP FV+LL
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 64
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQY 600
A+AL D DD ELGF+ DVI ++ + W G + +GWFPA FV L R Q
Sbjct: 33 AEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRL---RVNQD 89
Query: 601 SLAGDDS 607
A DD+
Sbjct: 90 EPADDDA 96
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERS 597
A+ D+ +++DEL F K +I ++++ D W GE+NG+ G FP+ +V++ + S
Sbjct: 39 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS 93
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
R A+AL DFE ++DELGFR +V+ ++ + W G L+ G FPA +V
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
RR +AL DFE +D+EL F+ ++IT++ D + W GE + G FP+ FV
Sbjct: 6 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
A+ D+ +++DEL F K +I ++++ D W GE+NG+ G FP+ +V++
Sbjct: 23 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 72
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
R A+AL DFE ++DELGFR +V+ ++ + W G L+ G FPA +V
Sbjct: 6 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 57
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 534 SRSRQRR-AKALLDFERHDDDELGFRKNDVITIISQK--DEHCWIGELNGLKGWFPAKFV 590
SR++ + K + +E +DDEL ++ D++T+I++ D W GELNG +G FP FV
Sbjct: 4 SRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 63
Query: 591 ELL 593
+LL
Sbjct: 64 KLL 66
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+ Q +A +F++ ++DEL F K DVI + ++ W G LNG GWFP+ +V
Sbjct: 6 NNQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV 60
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
R+ +A+ DFE +D+EL F+ ++IT++ D + W GE + G FP+ FV
Sbjct: 18 RKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQK--DEHCWIGELNGLKGWFPAKFVELL 593
K + +E +DDEL ++ D++T+I++ D W GELNG +G FP FV+LL
Sbjct: 7 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 60
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQK--DEHCWIGELNGLKGWFPAKFVELL 593
K + +E +DDEL ++ D++T+I++ D W GELNG +G FP FV+LL
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 59
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL---KGWFPAKFVELLDE 595
RR K + D + +DDEL F + +VI + ++D+ WIG + G KG FP FV +L +
Sbjct: 2 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD 61
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQY 600
A+AL D DD ELGF+ DVI + + W G + +GWFPA FV L R Q
Sbjct: 70 AEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFVRL---RVNQD 126
Query: 601 SLAGDDS 607
A DD+
Sbjct: 127 EPADDDA 133
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+AL DF+ +D ELGFR+ D I ++ D + W G +G G FP +V
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFVELL 593
+ A+AL D+ D L F++ND+ITI + E+ W +G+LNG +G FP VE+L
Sbjct: 11 KYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEIL 66
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
A+AL DFE ++DELGFR +V+ ++ + W G L+ G FPA +V
Sbjct: 5 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 54
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+AL DF+ +D ELGFR+ D I ++ D + W G +G G FP +V
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+AL DF+ +D ELGFR+ D I ++ D + W G +G G FP +V
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+AL DF+ +D ELGFR+ D I ++ D + W G +G G FP +V
Sbjct: 4 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKFVE 591
AKA DF D EL ++ D+I I+++K + W GE+ G GWFP+ +VE
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
A AL D++ DDE+ F +D+IT I D+ W G G G FPA +VEL
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 71
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
+ D+ +DDEL F K +I +++++D W GE++G G FP+ +V+L
Sbjct: 7 GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKL 56
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
A AL D++ DDE+ F +D+IT I D+ W G G G FPA +VEL
Sbjct: 13 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 64
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
S + Q +A +F++ ++DEL F K DVI + ++ W G NG GWFP+ +V
Sbjct: 2 SANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+ KAL ++ D DEL F ND+I II + W G L G +G FP +V
Sbjct: 7 QCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
A AL D++ DDE+ F +D+IT I D+ W G G G FPA +VEL
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 63
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+AL DF+ +D ELGFR+ D I ++ D + W G +G G FP +V
Sbjct: 162 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQK-DEHCWIGELNGLKGWFPAKFVEL 592
A A DF+ DDEL F++ D++ +++++ D++ + ELNG G+ P ++E+
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 55
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 542 KALLDFERHDDDELGFRKNDVITII---SQKDEHCWIGELNGLKGWFPAKFVELL 593
KAL D+E DDEL F + +I I+ +Q D+ W GE NG G FP+ VE L
Sbjct: 12 KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEEL 66
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
R+ +AL DFE +D+EL F+ ++I ++ D + W GE + G FP+ FV
Sbjct: 18 RKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S RR + + +DDEL + D+I ++ + +E W G LNG G FP+ F++ L
Sbjct: 3 SGSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKEL 62
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|B Chain B, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|C Chain C, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
Length = 310
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 14/230 (6%)
Query: 126 NLGVISRTDKLRSMTRQGIPHSLRPQLWLRLSGALEKKALSKIKYQDIVKASSSDALAFA 185
NLG +R L ++ + G+P +LR ++W L+G + +A I K S+ +++
Sbjct: 18 NLG--ARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAXLDRYRILITKDSAQESV--- 72
Query: 186 KQIEKDLLRTMPTNACFSTFSSTGVPXXXXXXXXXXXXFPDIGGVVNALDFGSRGWWFES 245
I +D+ RT P + F G DIG F +
Sbjct: 73 --ITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIG-YCQGQSFLAAVLLLHX 129
Query: 246 KRKVKRQKSILQNLIFGEEENGEDIKTKNIHQTGIQADQKVLRSLVASGLPQLEVSLLQH 305
+ + +L + + + D+ N + Q L L LP L
Sbjct: 130 PEE--QAFCVLVKIXY--DYGLRDLYRNNFEDLHCKFYQ--LERLXQEQLPDLHSHFSDL 183
Query: 306 DIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLFHSCEPVLVT 355
++E WFLTLF + + I DLL +G ++FH +L T
Sbjct: 184 NLEAHXYASQWFLTLFTAKFPLCXVFHIIDLLLCEGLNIIFHVALALLKT 233
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 535 RSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVE 591
RS + A+ D+ + +DEL F++ +I +I + D+ + G +NG+ G FP +VE
Sbjct: 14 RSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 70
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 532 DVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GEL-NGLKGWFPAKF 589
D + + R +AL D+E + DEL F+ D +T + +DE W G L NG G +PA +
Sbjct: 422 DATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANY 481
Query: 590 VELL 593
VE +
Sbjct: 482 VEAI 485
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+A +F++ ++DEL F K DVI + ++ W G NG GWFP+ +V
Sbjct: 8 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
Q +A +F++ ++DEL F K DVI + ++ W G NG GWFP+ +V
Sbjct: 6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap
Domain
Length = 301
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 104/252 (41%), Gaps = 28/252 (11%)
Query: 122 LTWDNLGVISRT------DKLRSMTRQGIPHSLRPQLW--LRLSGALEKKALSK-----I 168
+TWD + R + + ++ ++G+P S R ++W L L L + +K I
Sbjct: 22 ITWDKKLLNCRAKIRCDMEDIHTLLKEGVPKSRRGEIWQFLALQYRLRHRLPNKQQPPDI 81
Query: 169 KYQDIVKASSSDALAFAKQIEKDLLRTMPTNACFSTFSSTGVPXXXXXXXXXXXXFPDIG 228
Y++++K ++ A I DL RT PT+ FS G ++G
Sbjct: 82 SYKELLKQLTAQQHA----ILVDLGRTFPTHPYFSVQLGPGQLSLFNLLKAYSLLDKEVG 137
Query: 229 GVVNALDF--GSRGWWFESKRKVKRQKSILQNLIFGEEENGEDIKTKNIHQTGIQADQKV 286
+ F G ++ + K ++ +L F ++ + +Q
Sbjct: 138 -YCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPD--------MMSLQIQMYQ 188
Query: 287 LRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLF 346
L L+ L L +++I SL WFLTLFAS + R++D++FL G+ V+F
Sbjct: 189 LSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTLFASQFSLGFVARVFDIIFLQGTEVIF 248
Query: 347 HSCEPVLVTLEN 358
+L + E
Sbjct: 249 KVALSLLSSQET 260
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 550 HDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQYSLAGDD 606
+DDEL + D+I ++ + +E W G LNG G FP+ F++ L S + ++ D+
Sbjct: 30 QNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDE 86
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain
pdb|3QYE|B Chain B, Crystal Structure Of Human Tbc1d1 Rabgap Domain
Length = 331
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 103/255 (40%), Gaps = 30/255 (11%)
Query: 134 DKLRSMTRQGIPHSLRPQLWLRLSGALE-------KKALSKIKYQDIVKASSSDALAFAK 186
+K+ S QG+P R ++W L+ K+ + Y++++K +S A
Sbjct: 50 EKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQLTSQQHA--- 106
Query: 187 QIEKDLLRTMPTNACFSTFSSTGVPXXXXXXXXXXXXFPDIGGVVNALDF--GSRGWWFE 244
I DL RT PT+ FS G ++G L F G
Sbjct: 107 -ILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVG-YCQGLSFVAGILLLHMS 164
Query: 245 SKRKVKRQKSILQNLIFGEEENGEDIKTKNIHQTGIQADQKVLRSLVASGLPQLEVSLLQ 304
+ K K ++ ++ ++ + I +Q L L+ L L +
Sbjct: 165 EEEAFKMLKFLMFDMGLRKQYRPDMII--------LQIQMYQLSRLLHDYHRDLYNHLEE 216
Query: 305 HDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLFH-------SCEPVLVTLE 357
H+I SL WFLT+FAS + R++D++FL G+ V+F S +P+++ E
Sbjct: 217 HEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHE 276
Query: 358 NSAEIFNAL-SDIPG 371
N I + + S +P
Sbjct: 277 NLETIVDFIKSTLPN 291
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL--DERS 597
KA +F++ ++DEL K D+I + ++ W G LNG GWFP+ +V + ERS
Sbjct: 14 KARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERS 71
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKFVEL 592
A A +DF+ DDEL F++ D++ +++++ + W ELNG G+ P ++E+
Sbjct: 3 AIAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIEM 55
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQ--KDEHCWIGELNGLKGWFPAKFVE 591
A A +F D EL R+ DV+ I S+ D+ W GE NG GWFP+ +VE
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
S R+ K L D+ ++DEL DVI +I + +E W G LN G FP+ FV+ L+
Sbjct: 2 SMGRQCKVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKELE 60
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
+A+ D+E+ E+ DV+ ++ + + W ++ +GW PA F+E LD
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD 67
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEH--CWIGELNGLKGWFPAKFVEL 592
A AL +F +L F+K DVITI+ + D W G NG +G FPA +V +
Sbjct: 6 AVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVRV 59
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
S++R+ K L ++ ++DEL + D+I I + +E W G LN G FP+ FV+ L+
Sbjct: 5 SKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE 63
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S R A+A DF+ EL +K D++ I Q D++ + GE +G G FP ++ELL
Sbjct: 3 SGSSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELL 62
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVE 591
+AL DF +DD++L F+K D++ I + +E W E ++G +G P +VE
Sbjct: 5 RALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVE 55
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEH--CWIGELNGLKGWFPAKFVEL 592
AL FE +L F+ D IT+IS+ D H W G+L G G FPA +V +
Sbjct: 22 ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTM 73
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
+A+ D+E+ E+ DV+ ++ + + W ++ +GW PA F+E LD
Sbjct: 14 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD 66
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
+A+ D+E+ E+ DV+ ++ + + W ++ +GW PA F+E LD
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD 67
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
+A+ D+E+ E+ DV+ ++ + + W ++ +GW PA F+E LD
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD 67
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQK-DEHCWIGELNGLKGWFPAKFVEL 592
A A DF+ DDEL F++ D++ +++++ D++ + ELNG G+ P ++E+
Sbjct: 12 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 64
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GELN-GLKGWFPAKFVELL 593
R +AL D++ + DEL F+ D +T + ++DE W G L+ G G +PA +VE +
Sbjct: 5 RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKG-WFPAKFVE 591
KAL D++ +DEL F K+ +I + ++D W G+ G K WFP+ +VE
Sbjct: 7 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 57
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
A+A+ D + EL F+ DVI ++ ++ W G+++ +GWFPA FV L
Sbjct: 13 AEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRL 64
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKG-WFPAKFVE 591
KAL D++ +DEL F K+ +I + ++D W G+ G K WFP+ +VE
Sbjct: 10 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 60
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVEL 592
A A D++ +D+EL F +ND I I D+ W+GEL +G KG FP+ +V L
Sbjct: 7 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 60
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 546 DFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKFVEL 592
DF DDEL FRK ++ I++ +D+ W EL+G +G P+ ++E+
Sbjct: 8 DFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIEM 55
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVEL 592
A A D++ +D+EL F +ND I I D+ W+GEL +G KG FP+ +V L
Sbjct: 4 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 57
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 546 DFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKFVEL 592
DF DDEL FRK ++ I++ +D+ W EL+G +G P+ ++E+
Sbjct: 8 DFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEM 55
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVEL 592
A A D++ +D+EL F +ND I I D+ W+GEL +G KG FP+ +V L
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 533 VSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
V R RA+AL DF + EL F+ DVI ++S+ ++ G + G G FP FV++
Sbjct: 169 VDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 228
Query: 593 LDE 595
L +
Sbjct: 229 LKD 231
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+NG +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVKKLD 62
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 537 RQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+ RA+AL DF + EL F+ DVI ++S+ ++ G + G G FP FV++L
Sbjct: 3 KHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 545 LDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
D++ DDEL ++IT I ++D W G++NG +G FP FV
Sbjct: 8 FDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ D E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 6 ALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 57
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 522 SHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL 581
+H+ H + + R RA+AL DF + EL F+ DVI ++S+ ++ G + G
Sbjct: 2 NHKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGA 61
Query: 582 KGWFPAKFVELLDE 595
G FP FV++L +
Sbjct: 62 TGIFPLSFVKILKD 75
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ DE+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 62
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+NG +G+ PA +V+ LD
Sbjct: 6 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVKKLD 57
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ DE+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 6 ALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 57
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKF 589
+A+ +E DDE+ D+IT+I D W GE +GLKG FP +
Sbjct: 4 EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSY 52
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 533 VSRSRQRRA-----------KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNG 580
VSRSRQ +AL DF +D+++L F+K D++ I + +E W E G
Sbjct: 118 VSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEG 177
Query: 581 LKGWFPAKFVE 591
+G P +VE
Sbjct: 178 KRGMIPVPYVE 188
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 550 HDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQ 599
+D L +++ + W GE NG +G FP V LLD+++ +
Sbjct: 251 YDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPE 300
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
AL F ++++L R D+IT++ +E W G++ G+FPA FV+ L
Sbjct: 12 ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRL 62
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKG-WFPAKFVE 591
KAL D++ +DEL F K+ +I + +++ W G+ G K WFP+ +VE
Sbjct: 10 KALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVE 60
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVE 591
R+ K L ++ ++DEL + D+I I + +E W G LN G FP+ FV+
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 533 VSRSRQRRA-----------KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNG 580
VSRSRQ +AL DF +D+++L F+K D++ I + +E W E G
Sbjct: 120 VSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEG 179
Query: 581 LKGWFPAKFVE 591
+G P +VE
Sbjct: 180 KRGMIPVPYVE 190
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 534 SRSRQRRAKALLDFERHD-------DDELGFRKNDVITIISQKDEH-CWIGELNGLKGWF 585
S S RR AL D++ + + EL F D+IT+ + DE + GELNG KG
Sbjct: 3 SGSSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLV 62
Query: 586 PAKFVE 591
P+ F+E
Sbjct: 63 PSNFLE 68
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 546 DFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKFVE 591
D++ DDEL R ++I + + E W+ GELNG +G FP FV+
Sbjct: 8 DYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVK 54
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQK--DEHCWIGELNGLKGWFPAKF 589
+ L + ++DEL FR+ ++I +IS++ + W GELNG +G FP F
Sbjct: 10 RTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 533 VSRSRQRRA-----------KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNG 580
VSRSRQ +AL DF +D+++L F+K D++ I + +E W E G
Sbjct: 118 VSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEG 177
Query: 581 LKGWFPAKFVE 591
+G P +VE
Sbjct: 178 KRGMIPVPYVE 188
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 540 RAKALLDF--ERHDDDELGFRKNDVITIISQKDEHCWIGEL-NGLKGWFPAKFVELL 593
R + L F ERH L F ++IT++ D W GE +GL+GWFPA +V+LL
Sbjct: 5 RCRTLYPFSGERHGQG-LRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL 60
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 546 DFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKFVE 591
D++ DDEL R ++I + + E W+ GELNG +G FP FV+
Sbjct: 9 DYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVK 55
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 554 ELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQYSLAG 604
EL FR+ DV+ + + W GE NG++G P K++ L KQ AG
Sbjct: 26 ELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQVVGAG 76
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDE---HCWIGELNGLKGWFPAKFVELLDE-RSK 598
AL D+E +DDEL ++ D +TII ++DE W LN +G+ P + L + +
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKPR 234
Query: 599 QYSLA 603
Q SLA
Sbjct: 235 QRSLA 239
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDE---HCWIGELNGLKGWFPAKFVELLDE-RSK 598
AL D+E +DDEL ++ D +TII ++DE W LN +G+ P + L + +
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKPR 234
Query: 599 QYSLA 603
Q SLA
Sbjct: 235 QRSLA 239
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 537 RQRRA---KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVE 591
RQ A +AL DF +D+++L F+K D++ I + +E W E G +G P +VE
Sbjct: 10 RQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 68
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S + A+ DF+ EL +K D++ I + D++ GE +G G FPA +VE+L
Sbjct: 3 SGSSGKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVL 62
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVKKLD 62
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 544 LLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
L D++ EL +K D++T+++ ++ W E+NG +G+ PA +++ LD
Sbjct: 12 LYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKLD 62
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 10 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 61
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 10 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 61
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 62
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVE 591
+AL DF +D+++L F+K D++ I + +E W E G +G P +VE
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 57
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+AL D+ + DEL D++ +I + ++ W E NG +G+ P ++E L
Sbjct: 12 RALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL 63
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVKKLD 62
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 62
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVE 591
+AL DF +D+++L F+K D++ I + +E W E G +G P +VE
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 62
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 62
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVE 591
+AL DF +D+++L F+K D++ I + +E W E G +G P +VE
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVE 591
+AL DF +D+++L F+K D++ I + +E W E G +G P +VE
Sbjct: 4 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 54
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVE 591
+AL DF +D+++L F+K D++ I + +E W E G +G P +VE
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 57
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVKKLD 62
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVE 591
+AL DF +D+++L F+K D++ I + +E W E G +G P +VE
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQK-----DEHCWIGEL-NGLKGWFPAKFV 590
A+ D+E D+EL R+ D + ++SQ DE W G+L +G G FP+ +V
Sbjct: 34 AVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
S S + +AL FE DEL F + D+I I D + W G G G P+ +V
Sbjct: 3 SGSSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+ A+ DF+ EL +K D++ I + D++ GE +G G FPA +VE+L
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVL 56
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQK-DEHCWI-GELNGLKGWFPAKFVE 591
+AL FE + DE+ F D+I + + E W+ G G GWFP +VE
Sbjct: 9 RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+AL FE DEL F + D+I I D + W G G G P+ +V
Sbjct: 7 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
>pdb|2EBP|A Chain A, Solution Structure Of The Sh3 Domain From Human Sam And
Sh3 Domain Containing Protein 1
Length = 73
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 540 RAKALLDF--ERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
RA+ DF +D D L +K D+I IIS+ W+G LN G F +V++L
Sbjct: 11 RARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVL 66
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 544 LLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
L D++ EL +K D++T+++ ++ W E+N +G+ PA +++ LD
Sbjct: 12 LYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLKKLD 62
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHC---WIGELNGLKGWFPAKFVELL 593
AKAL D DEL FRK D++T++ Q + W+ L+G +G P +++L
Sbjct: 6 AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKIL 61
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 36.6 bits (83), Expect = 0.059, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKFVELL 593
R+AKAL + D EL F V + E W+ G LNG G P +VE L
Sbjct: 11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFL 66
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 36.6 bits (83), Expect = 0.068, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL-NGLKGWFPAKFV 590
AL D+ + DEL + D+I + + +E W G + G +G+FPA V
Sbjct: 11 ALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 36.6 bits (83), Expect = 0.070, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVE 591
+ +AL +E ++L F++ D+I ++S+ +E GE G G FP FVE
Sbjct: 7 QVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 36.2 bits (82), Expect = 0.077, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ L
Sbjct: 22 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 72
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIG-ELNGLKGWFPAKFVELL 593
+ L DF +D ++L F+K +++ II + +E W +G G P +VE L
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL 181
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 550 HDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERS 597
+D L D++ + W GE+NG KG FP V++ D ++
Sbjct: 251 YDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 298
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIG-ELNGLKGWFPAKFVELL 593
+ L DF +D ++L F+K +++ II + +E W +G G P +VE L
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL 181
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 550 HDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERS 597
+D L D++ + W GE+NG KG FP V++ D ++
Sbjct: 251 YDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 298
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 36.2 bits (82), Expect = 0.081, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIIS--QKDEHCWIGELNGLKGWFPAKFVELL 593
S R+A+ L D++ + EL ++VIT+ S D +GE KG P ++ELL
Sbjct: 15 SNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELL 74
Query: 594 D 594
+
Sbjct: 75 N 75
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 36.2 bits (82), Expect = 0.081, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 544 LLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
L D++ EL +K D++T+++ ++ W E+N +G+ PA +++ LD
Sbjct: 12 LYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKKLD 62
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 36.2 bits (82), Expect = 0.085, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+ +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVKKLD 62
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELN--GLKGWFPAKFVELLD 594
R +A+ D+ D+DE+ FR D I + D+ G + G G PA ++E ++
Sbjct: 7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN 64
>pdb|2KE9|A Chain A, Nmr Solution Structure Of The Caskin Sh3 Domain
Length = 83
Score = 36.2 bits (82), Expect = 0.096, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 540 RAKALLDF-ERHDDDELGFRKNDVITIISQKDEHCWIGELNGLK------GWFPAKFVEL 592
+ +AL DF HD L R DVIT++ Q + W G ++ + G+FP VE+
Sbjct: 20 KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEV 79
Query: 593 LDER 596
+ +R
Sbjct: 80 VSKR 83
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 552 DDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+DEL K +T++ + + W G NG GWFP+ +V
Sbjct: 14 EDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+ +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVKKLD 62
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 544 LLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
L D++ E+ +K D++T+++ ++ W E+N +G+ PA +++ LD
Sbjct: 12 LYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKKLD 62
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFV 590
AL D++ +D EL R+N+ ++ + H W + + NG +G+ P+ ++
Sbjct: 13 ALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYL 61
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+AL FE DEL + D+I I D + W G G G P+ +V
Sbjct: 18 RALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV 66
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFV 590
AL D++ +D EL R+N+ ++ + H W + + NG +G+ P+ ++
Sbjct: 24 ALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYL 72
>pdb|2KXC|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Irtks-Sh3
And Espfu- R47 Complex
pdb|2LNH|B Chain B, Enterohaemorrhagic E. Coli (Ehec) Exploits A Tryptophan
Switch To Hijack Host F-Actin Assembly
Length = 67
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 555 LGFRKNDVITIISQKDEHCWI-GE--LNGLKGWFPAKFVELLDE 595
L F + DVIT++ +++ W+ GE ++ +GWFP+ + +LL+E
Sbjct: 24 LSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLEE 67
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVE 591
+AL F+ D +LG + D + ++ + + G NG G FPA +V+
Sbjct: 6 EALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 554 ELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 47
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNG-LKGWFPAKFVE 591
S S R KAL D++ DEL F + +I +S++ W G+ ++ +FP+ +VE
Sbjct: 3 SGSSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVE 61
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 552 DDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+DEL K + ++ + + W G NG GWFP+ +V
Sbjct: 18 EDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 554 ELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 45
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 554 ELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 15 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 55
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 544 LLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
L D++ E+ +K D++T+++ ++ W E++ +G+ PA +++ LD
Sbjct: 12 LYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLKKLD 62
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 550 HDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQYSLAGDDS 607
+D L D++ + W GE+NG KG FP V++ D ++ + +G S
Sbjct: 30 YDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPDENESGPSS 87
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 552 DDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+DEL K + ++ + + W G NG GWFP+ +V
Sbjct: 31 EDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human
Tbc1 Domain Family Member 14
Length = 334
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 105/283 (37%), Gaps = 52/283 (18%)
Query: 113 SPGKEE-----SEALTWDN-----LGVISRTDKLRSMTRQGIPHSLRPQLW-------LR 155
S G+E + LTW+N + + K+R + QGIP S+R ++W L
Sbjct: 8 SSGRENLYFQGNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNELN 67
Query: 156 LSGALEKKALSKIKYQ-------------DIVKASSSDALAFAKQIEKDLLRTMPTNACF 202
++ L L++ K + + S++D A + I+ D+ RT P N C
Sbjct: 68 ITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLDISRTFP-NLCI 126
Query: 203 STFSSTGVPXXXXXXXXXXXXFPDIGGVVNALDFGSRGWWFESKRKVKRQKSILQNLIFG 262
PD+G V +G F + + + + F
Sbjct: 127 FQQGGPYHDMLHSILGAYTCYRPDVGYV--------QGMSFIAAVLILNLDTADAFIAFS 178
Query: 263 EEENGEDIKTKNIHQTGIQADQKVLRSLVAS-------GLPQLEVSLLQHDIELSLITLH 315
++ K + D ++ + A+ LP+L ++++ + +
Sbjct: 179 ------NLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLID 232
Query: 316 WFLTLFASVVHFKILLRIWDLLFLDGSIVLFHSCEPVLVTLEN 358
W TL++ + + RIWD+ DG LF + +L E+
Sbjct: 233 WIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFED 275
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL--KGWFPAKFVELL 593
A A +F E+ FRK + IT++ Q DE+ + G + G +G FP +V+++
Sbjct: 10 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 64
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL--KGWFPAKFVELL 593
A A +F E+ FRK + IT++ Q DE+ + G + G +G FP +V+++
Sbjct: 9 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 63
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 533 VSRSRQRRAKALLDFERHDDD-ELGFRKNDVITIISQKD----EHCW--IGELNGLKGWF 585
+ S+ A+AL DF + + E+ +K D++ I+S+KD + W + NG G+
Sbjct: 9 IDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYI 68
Query: 586 PAKFVELLDERSK 598
P ++E++ R K
Sbjct: 69 PYNYIEIIKRRKK 81
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
A+ D+ D+ +L F + + I I+ Q W GE G G+ PA V
Sbjct: 12 AIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQ---KDEHCWIGELNGLKGWFPAKFVELL 593
A+AL D DEL F + D++TI+ Q + E W L+G +G PA +++L
Sbjct: 10 ARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQIL 65
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
AL F+ + +EL F D I I++ ++ G L G G FP +FV+L
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKL 67
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
Length = 345
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 277 QTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWD 335
Q GIQ K+L LV+ Q+ L QH++ W L V + +R+WD
Sbjct: 210 QPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWD 268
>pdb|3RNJ|A Chain A, Crystal Structure Of The Sh3 Domain From Irsp53 (Baiap2)
Length = 67
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 536 SRQRRAKALLDFERHDDDEL-GFRKNDVITIISQKDEHCW---IGELNGLKGWFPAKFVE 591
S + R KA+ D+ L F++ D+IT++ + W E ++GWFP +
Sbjct: 5 SGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTR 64
Query: 592 LLD 594
+LD
Sbjct: 65 VLD 67
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 550 HDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERS 597
+D L D++ + W GE+NG KG FP V++ D ++
Sbjct: 15 YDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 62
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKD----EHCWIGELNGLKGWFPAKFV 590
A+ F+ + +EL N + I+ KD W+ E+NG KG+ P+ ++
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYI 69
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI---GELNGLKGWFPAKFVELL 593
+RA AL DFE +D+EL + D++ IS K W+ E G P +FV +
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIV-FISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI---GELNGLKGWFPAKFVELL 593
+RA AL DFE +D+EL + D++ IS K W+ E G P +FV +
Sbjct: 6 QRAVALYDFEPENDNELRLAEGDIV-FISYKHGQGWLVAENESGSKTGLVPEEFVSYI 62
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 553 DELGFRKNDVITIISQKDEHCWIGELNG-----LKGWFPAKFVELLDERSKQYS 601
++L +I I+ + W GEL KGWFPA V+LL S++ S
Sbjct: 22 EQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSERAS 75
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
Length = 80
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 533 VSRSRQRRAKALLDFERHDDD-ELGFRKNDVITIISQKD----EHCW--IGELNGLKGWF 585
+ S+ A+AL DF + + E+ +K D++ I+S+KD + W + NG G+
Sbjct: 9 IDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYI 68
Query: 586 PAKFVELLDER 596
P ++E++ R
Sbjct: 69 PYNYIEIIKRR 79
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 547 FERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVE 591
+ DE+GF K + +I + E W G +GW PA +++
Sbjct: 17 YTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFV 590
AL D+E + +L F+K + + I++ + W+ G G+ P+ +V
Sbjct: 8 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 57
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 552 DDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+DEL +T+ + W G NG GWFP+ +V
Sbjct: 15 EDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLD 594
AL D+E + +L F+K + + I++ + W+ G G+ P+ +V D
Sbjct: 90 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQ---KDEHCWIGELNGLKGWFPAKFVELLDERSKQ 599
AL D+ DEL FR+ + +T++ + ++ W L+G +G+ P + L Q
Sbjct: 159 ALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQ 218
Query: 600 YS 601
S
Sbjct: 219 RS 220
>pdb|1SPK|A Chain A, Solution Structure Of Rsgi Ruh-010, An Sh3 Domain From
Mouse Cdna
Length = 72
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 555 LGFRKNDVITIISQKDEHCWI-GELNGLK--GWFPAKFVELL 593
L F + DV+T++ +++ W+ GE + K GWFP+ + +LL
Sbjct: 25 LSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL 66
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFV 590
AL D+E + +L F+K + + I++ + W+ G G+ P+ +V
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFV 590
AL D+E + +L F+K + + I++ + W+ G G+ P+ +V
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFV 590
AL D+E + +L F+K + + I++ + W+ G G+ P+ +V
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFV 590
AL D+E + +L F+K + + I++ + W+ G G+ P+ +V
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFV 590
AL D+E + +L F+K + + I++ + W+ G G+ P+ +V
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL----NG----LKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+ NG +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVKKLD 70
>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized Average
Structure
Length = 77
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFV 590
AL D++ +D EL R ++ ++ + H W + + NG +G+ P+ ++
Sbjct: 25 ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 73
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLK--GWFPAKFVELL 593
+AL + +DDEL R D++ ++ + D+ ++G K G FP +V+ L
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLK--GWFPAKFVELL 593
+AL + +DDEL R D++ ++ + D+ ++G K G FP +V+ L
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE----LNG----LKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E +NG +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD 70
>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|A Chain A, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 63
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFV 590
AL D++ +D EL R ++ ++ + H W + + NG +G+ P+ ++
Sbjct: 10 ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 58
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFV 590
AL D+E + +L F+K + + I++ + W+ G G+ P+ +V
Sbjct: 5 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE----LNG----LKGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E +NG +G+ PA +V+ LD
Sbjct: 6 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD 65
>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain
pdb|2RNA|A Chain A, Itk Sh3 Average Minimized
Length = 64
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFV 590
AL D++ +D EL R ++ ++ + H W + + NG +G+ P+ ++
Sbjct: 10 ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 58
>pdb|2EYX|A Chain A, C-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 67
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 550 HDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERS 597
+D L +++ + W GE NG +G FP V LLD+++
Sbjct: 20 YDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQN 67
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL--------KGWFPAKFVELLD 594
AL D++ E+ +K D++T+++ ++ W E+ +G+ PA +V+ LD
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYVKKLD 70
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLD 594
AL D+E +D+L F K + I++ + W G G+ P+ +V +D
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLD 594
AL D+E +D+L F K + I++ + W G G+ P+ +V +D
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 62
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLD 594
AL D+E +D+L F K + I++ + W G G+ P+ +V +D
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 62
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLD 594
AL D+E +D+L F K + I++ + W G G+ P+ +V +D
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 61
>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of C-Crkii
Length = 76
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 550 HDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERS 597
+D L +++ + W GE NG +G FP V LLD+++
Sbjct: 23 YDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQN 70
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 541 AKALLDFERHDDD-ELGFRKNDVITIISQKD----EHCW--IGELNGLKGWFPAKFVELL 593
A+AL DF + + E+ +K D++ I+S+KD + W + NG G+ P ++E++
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 69
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLD 594
AL D+E +D+L F K + I++ + W G G+ P+ +V +D
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLD 594
AL D+E +D+L F K + I++ + W G G+ P+ +V +D
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 61
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLD 594
AL D+E +D+L F K + I++ + W G G+ P+ +V +D
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFV 590
AL D+E + +L F+K + + I++ + W+ G G+ P+ +V
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 30.0 bits (66), Expect = 6.9, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLD 594
AL D+E +D+L F K + I++ + W G G+ P+ +V +D
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCW 574
+AL DFE + D+L + NDVIT+I + E+ W
Sbjct: 282 RALQDFE--EPDKLHIQMNDVITVIEGRAENYW 312
>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein
pdb|2L3Q|A Chain A, Structure Of The Prolyl Trans Isomer Of The Crk Protein
Length = 78
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 550 HDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDE 595
+D L +++ + W GE NG +G FP V LLD+
Sbjct: 33 YDKTALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLLDQ 78
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 29.6 bits (65), Expect = 9.3, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLD 594
AL D+E +D+L F K + I++ + W G G+ P+ +V +D
Sbjct: 20 ALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 533 VSRSRQRRAKALLDFERHDDDELGFRKNDVITII-SQKDEHCWIGEL--NGLKGWFPAKF 589
++ ++R DF DEL + D + I+ +K + W+ +L +G G PA+F
Sbjct: 1 MASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQF 60
Query: 590 VE 591
+E
Sbjct: 61 IE 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,610,217
Number of Sequences: 62578
Number of extensions: 1131748
Number of successful extensions: 2764
Number of sequences better than 100.0: 217
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 2558
Number of HSP's gapped (non-prelim): 249
length of query: 940
length of database: 14,973,337
effective HSP length: 108
effective length of query: 832
effective length of database: 8,214,913
effective search space: 6834807616
effective search space used: 6834807616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)