Query psy11360
Match_columns 940
No_of_seqs 726 out of 3544
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 16:24:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2222|consensus 100.0 1E-150 2E-155 1217.7 25.9 731 22-940 44-848 (848)
2 KOG3759|consensus 100.0 8E-46 1.7E-50 401.5 4.8 121 797-922 500-621 (621)
3 KOG2058|consensus 100.0 5.8E-43 1.3E-47 393.1 14.9 298 63-426 89-412 (436)
4 KOG4347|consensus 100.0 4.4E-34 9.4E-39 325.5 13.9 312 63-435 147-481 (671)
5 smart00164 TBC Domain in Tre-2 100.0 5.6E-30 1.2E-34 266.5 10.3 179 140-342 1-198 (199)
6 KOG2223|consensus 100.0 1.3E-29 2.9E-34 275.3 8.9 266 79-374 217-543 (586)
7 COG5210 GTPase-activating prot 100.0 7E-28 1.5E-32 284.1 16.6 220 130-372 199-445 (496)
8 KOG3759|consensus 99.9 7.4E-29 1.6E-33 269.9 5.4 171 609-780 427-621 (621)
9 KOG2222|consensus 99.9 2.9E-26 6.3E-31 250.4 4.8 126 654-779 666-794 (848)
10 KOG4436|consensus 99.9 3E-24 6.6E-29 248.1 17.2 245 130-426 564-838 (948)
11 KOG1092|consensus 99.9 4.1E-25 8.9E-30 241.2 9.5 251 129-411 174-473 (484)
12 KOG4567|consensus 99.9 2.5E-22 5.4E-27 212.4 16.3 242 131-411 23-360 (370)
13 PF00566 RabGAP-TBC: Rab-GTPas 99.9 4.6E-23 1E-27 215.9 9.1 182 146-353 1-206 (214)
14 KOG2221|consensus 99.9 8.9E-24 1.9E-28 213.2 0.1 206 65-317 47-267 (267)
15 KOG1102|consensus 99.8 9.3E-21 2E-25 216.5 12.8 222 123-373 126-371 (397)
16 KOG2224|consensus 99.8 1E-17 2.2E-22 182.2 16.1 277 130-407 421-749 (781)
17 KOG1093|consensus 99.7 4.8E-18 1E-22 191.5 12.6 206 134-370 346-575 (725)
18 PF02759 RUN: RUN domain; Int 99.7 2.3E-18 5E-23 167.9 6.5 127 619-772 1-133 (133)
19 KOG1091|consensus 99.6 1.6E-15 3.4E-20 171.7 13.0 197 182-411 102-362 (625)
20 smart00593 RUN domain involved 99.5 6.3E-15 1.4E-19 125.9 4.7 63 709-771 1-64 (64)
21 smart00593 RUN domain involved 99.5 7.5E-15 1.6E-19 125.5 2.9 63 847-909 1-64 (64)
22 PF02759 RUN: RUN domain; Int 99.4 1.1E-13 2.3E-18 135.0 2.5 95 816-910 38-133 (133)
23 KOG4436|consensus 99.4 2.8E-12 6.1E-17 149.9 12.7 296 25-351 67-395 (948)
24 PF14604 SH3_9: Variant SH3 do 99.3 3.1E-12 6.8E-17 103.3 4.3 49 543-591 1-49 (49)
25 KOG2595|consensus 99.2 4.4E-12 9.6E-17 136.6 5.0 233 132-420 47-309 (395)
26 KOG2197|consensus 99.2 1.6E-11 3.5E-16 143.6 7.4 183 141-346 175-391 (488)
27 KOG1264|consensus 99.1 4.7E-12 1E-16 147.1 -1.5 146 495-646 699-877 (1267)
28 PF07653 SH3_2: Variant SH3 do 99.1 8.6E-11 1.9E-15 97.3 4.5 54 540-593 1-55 (55)
29 KOG2070|consensus 99.0 1.7E-10 3.7E-15 128.6 5.3 60 539-598 18-77 (661)
30 KOG2199|consensus 99.0 7.9E-11 1.7E-15 128.9 2.2 59 536-594 213-271 (462)
31 KOG3601|consensus 99.0 3.4E-10 7.3E-15 115.3 3.6 113 477-593 96-218 (222)
32 KOG1118|consensus 98.9 6.9E-10 1.5E-14 118.0 5.0 58 538-595 306-363 (366)
33 KOG2996|consensus 98.9 2.2E-10 4.8E-15 129.7 0.2 97 497-593 739-862 (865)
34 KOG1029|consensus 98.9 8.3E-10 1.8E-14 128.3 4.2 56 539-594 1054-1109(1118)
35 KOG3636|consensus 98.9 6E-09 1.3E-13 115.5 10.0 213 143-413 36-273 (669)
36 PF00018 SH3_1: SH3 domain; I 98.8 4.7E-09 1E-13 84.4 3.8 46 542-587 1-48 (48)
37 smart00326 SH3 Src homology 3 98.8 1.1E-08 2.4E-13 84.0 5.8 54 539-592 3-57 (58)
38 KOG0162|consensus 98.8 6.7E-09 1.5E-13 120.4 5.6 54 539-592 1052-1105(1106)
39 KOG4226|consensus 98.7 1.7E-08 3.6E-13 105.7 6.2 57 540-596 109-165 (379)
40 cd00174 SH3 Src homology 3 dom 98.7 2.3E-08 5E-13 81.0 5.4 51 541-591 2-53 (54)
41 KOG4348|consensus 98.7 7.4E-09 1.6E-13 114.1 2.8 67 536-602 98-164 (627)
42 KOG2801|consensus 98.6 8.5E-08 1.8E-12 101.4 8.7 256 133-431 32-312 (559)
43 KOG4225|consensus 98.6 3E-08 6.5E-13 110.3 5.3 60 539-598 231-290 (489)
44 KOG4792|consensus 98.5 3.4E-08 7.3E-13 101.2 2.5 93 505-597 80-184 (293)
45 KOG4348|consensus 98.4 1.9E-07 4.1E-12 103.3 5.3 57 538-594 261-319 (627)
46 KOG4226|consensus 98.4 4.3E-07 9.4E-12 95.4 6.1 60 539-598 192-254 (379)
47 KOG2856|consensus 98.4 9.3E-08 2E-12 103.9 1.0 55 539-593 415-471 (472)
48 KOG1029|consensus 98.2 1.4E-06 2.9E-11 102.3 4.2 59 539-597 694-754 (1118)
49 KOG4225|consensus 98.1 2.2E-06 4.8E-11 95.7 3.7 53 540-592 434-488 (489)
50 KOG2546|consensus 98.0 2.3E-06 4.9E-11 95.2 2.3 55 540-594 425-479 (483)
51 KOG1843|consensus 98.0 4.6E-06 1E-10 92.4 4.5 55 538-592 416-472 (473)
52 KOG3655|consensus 98.0 2.3E-06 5E-11 96.8 1.9 56 538-593 427-483 (484)
53 KOG0515|consensus 97.9 4.5E-06 9.7E-11 94.8 2.6 54 540-593 685-741 (752)
54 KOG3875|consensus 97.8 3.2E-06 6.9E-11 90.7 -0.7 57 539-595 269-332 (362)
55 KOG1702|consensus 97.7 2.3E-05 5.1E-10 79.5 3.9 57 537-593 206-264 (264)
56 KOG3523|consensus 97.3 5.7E-05 1.2E-09 87.7 -0.3 60 538-597 608-669 (695)
57 KOG4278|consensus 97.0 0.00059 1.3E-08 79.8 4.9 63 539-602 91-155 (1157)
58 KOG4773|consensus 96.9 0.00015 3.3E-09 79.3 -1.4 60 539-598 176-235 (386)
59 KOG3632|consensus 96.7 0.0013 2.7E-08 80.1 4.0 60 538-597 1138-1206(1335)
60 KOG2528|consensus 96.5 0.0017 3.7E-08 73.5 2.9 57 539-595 3-61 (490)
61 KOG4792|consensus 96.5 0.0059 1.3E-07 63.5 6.5 60 538-597 227-288 (293)
62 KOG1451|consensus 96.3 0.0043 9.4E-08 72.0 4.7 55 539-593 757-812 (812)
63 KOG4381|consensus 96.1 0.0048 1E-07 69.7 4.1 121 616-773 56-182 (368)
64 KOG0197|consensus 96.0 0.0041 8.8E-08 72.4 2.8 56 538-593 11-69 (468)
65 KOG4429|consensus 95.9 0.0032 7E-08 67.4 1.6 55 539-593 364-418 (421)
66 KOG3771|consensus 95.8 0.0074 1.6E-07 69.3 4.1 56 537-592 399-455 (460)
67 KOG3557|consensus 95.5 0.008 1.7E-07 70.9 2.8 63 537-600 499-562 (721)
68 KOG0609|consensus 95.3 0.0071 1.5E-07 70.4 1.5 55 538-592 214-280 (542)
69 KOG4575|consensus 95.2 0.024 5.2E-07 66.6 5.1 58 539-596 9-68 (874)
70 KOG3725|consensus 94.8 0.011 2.5E-07 62.3 1.1 56 538-593 317-374 (375)
71 KOG3775|consensus 94.8 0.017 3.7E-07 64.1 2.5 62 539-600 263-326 (482)
72 KOG3601|consensus 94.2 0.0099 2.1E-07 61.6 -0.8 52 541-592 3-55 (222)
73 KOG3632|consensus 93.1 0.05 1.1E-06 66.9 2.3 55 539-593 1245-1307(1335)
74 KOG0199|consensus 88.9 0.51 1.1E-05 57.2 5.0 51 540-592 378-431 (1039)
75 KOG4381|consensus 87.8 0.19 4E-06 57.3 0.5 64 847-910 118-181 (368)
76 KOG3565|consensus 85.9 0.38 8.3E-06 58.9 1.8 57 537-593 577-636 (640)
77 KOG0040|consensus 84.2 0.04 8.7E-07 70.0 -7.5 58 539-596 969-1026(2399)
78 KOG2080|consensus 84.1 0.51 1.1E-05 57.5 1.7 71 697-772 1219-1290(1295)
79 PF08239 SH3_3: Bacterial SH3 84.0 1.1 2.3E-05 36.6 3.1 36 556-591 18-55 (55)
80 PF14961 BROMI: Broad-minded p 83.2 6.6 0.00014 50.7 10.7 86 283-368 1166-1258(1296)
81 KOG2080|consensus 75.3 9.7 0.00021 47.1 8.3 139 619-762 815-958 (1295)
82 KOG1648|consensus 72.0 0.49 1.1E-05 54.6 -3.1 183 121-340 533-744 (813)
83 KOG3812|consensus 72.0 1.9 4.1E-05 47.9 1.4 47 541-587 61-117 (475)
84 smart00287 SH3b Bacterial SH3 71.6 3.9 8.5E-05 34.1 3.0 35 556-590 26-61 (63)
85 PF14603 hSH3: Helically-exten 69.8 3.5 7.7E-05 37.4 2.4 43 551-593 29-72 (89)
86 KOG3705|consensus 65.5 8.4 0.00018 43.9 4.7 53 540-592 511-565 (580)
87 PRK10884 SH3 domain-containing 64.1 4.8 0.0001 42.7 2.5 37 556-592 49-87 (206)
88 PF10815 ComZ: ComZ; InterPro 53.6 17 0.00038 29.9 3.4 39 287-325 6-44 (56)
89 KOG2996|consensus 53.4 8.4 0.00018 45.8 2.2 43 554-596 626-671 (865)
90 PF06347 SH3_4: Bacterial SH3 52.0 16 0.00034 29.9 3.1 35 555-590 19-53 (55)
91 KOG2197|consensus 39.7 14 0.0003 44.4 1.3 27 135-161 69-95 (488)
92 smart00743 Agenet Tudor-like d 38.2 28 0.0006 29.1 2.5 25 556-580 2-26 (61)
93 KOG4384|consensus 36.1 31 0.00067 39.1 3.2 57 540-596 138-196 (361)
94 KOG1314|consensus 31.6 49 0.0011 37.6 3.8 48 550-598 329-388 (414)
95 PRK13914 invasion associated s 31.5 38 0.00082 40.4 3.1 38 555-592 103-141 (481)
96 COG3103 SH3 domain protein [Si 31.4 39 0.00085 35.8 2.9 40 555-594 48-89 (205)
97 PF11302 DUF3104: Protein of u 22.7 73 0.0016 28.4 2.5 25 554-578 3-33 (75)
98 KOG0116|consensus 20.0 33 0.00071 40.3 -0.2 93 721-814 20-118 (419)
No 1
>KOG2222|consensus
Probab=100.00 E-value=1.1e-150 Score=1217.71 Aligned_cols=731 Identities=56% Similarity=0.960 Sum_probs=677.4
Q ss_pred hhcccccCCCCCCcccCCCCChHHHHHhhccCCCC---CCCCCCCCCCCCCcccccCC-----CCcc--ccccccCCCCc
Q psy11360 22 ILANRITIPGGPFSALTPSMWPQDIISKLNQVPED---PNSQPDYRFDEFGFRVEEED-----GPEQ--NSNKLLSEPFI 91 (940)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~D~~GF~~~~~~-----~~~~--~~~~~~~~~~~ 91 (940)
|.-.+|+.||+||||++.+|||++|++|+..|.|. |+.+|.+.+|+|||++++++ ++|+ ++.|.+++|+.
T Consensus 44 i~~~~~~~~g~pfsain~am~p~~ilaklgggae~~sgpndqp~~~fdefgfr~edddhdpnlg~eeetss~k~ls~pfl 123 (848)
T KOG2222|consen 44 IADGLFELDGGPFSAINAAMLPIEILAKLGGGAEEASGPNDQPEEFFDEFGFRKEDDDHDPNLGDEEETSSAKHLSEPFL 123 (848)
T ss_pred hhhccccCCCCChhhhhHhhhhHHHHHhcCCchhhccCCCCChHHHHHhhCcccccccCCCCCCchhccchhhhccCcch
Confidence 67789999999999999999999999999998763 88999999999999999887 5654 68899999999
Q ss_pred cchhHHHHHHHHHHhcCCCCCCCCccccccccccccc-cCCChHHHHHHHh-cCCCCChhHHHHHHHhccHHHHhhCHHH
Q psy11360 92 EDPQHRLQWVAYLEFNSSSANSPGKEESEALTWDNLG-VISRTDKLRSMTR-QGIPHSLRPQLWLRLSGALEKKALSKIK 169 (940)
Q Consensus 92 e~~~~~~kW~~~l~~~~~~~~~~~~~~~~~~~W~~~~-~~~~~~kLk~lir-~GIP~~lR~~vW~~Llg~~~~~~~~~~~ 169 (940)
|+.++++||+++|++.++ ++..++.|+.+. ...++++++.+++ +|||+++|+.+|++|+|+..+++..+..
T Consensus 124 edaq~klk~ia~le~~hk-------e~~~dl~w~hi~~~~~ktdk~~~llkeggiphslr~~lw~rlsga~~kkk~ae~s 196 (848)
T KOG2222|consen 124 EDAQHKLKLIAHLEDSHK-------EEAADLLWEHIDGMELKTDKFEELLKEGGIPHSLRAFLWMRLSGALAKKKDAETS 196 (848)
T ss_pred hhhHHHHHHHHHHHHhhH-------HHHhhhhHHhhcccccchHHHHHHHHcCCCCcchhHHHHHHhhhhhhhhcccccc
Confidence 999999999999999887 788889999987 7889999999999 6699999999999999999999889999
Q ss_pred HHHHHHhccCchhHHHHHHHHhhhhcCCCCccccCCCCCChhHHhhhhhhheeecCCCc---cc--ceecccCCccceeh
Q psy11360 170 YQDIVKASSSDALAFAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILRALAWLFPDIG---GV--VNALDFGSRGWWFE 244 (940)
Q Consensus 170 Y~~l~~~~~~~~~~~~~qIekDl~RT~p~~~~F~~~~~~~~~~L~rIL~Aya~~np~iG---gm--Iaa~~~~~~~~~~~ 244 (940)
|.++++++.++.....+||++|+.||.|+|.||+++++.|+.+|||||++.|+..|++| || |+|.
T Consensus 197 y~~ilk~~andk~~~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~---------- 266 (848)
T KOG2222|consen 197 YEDILKACANDKLMIGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVAC---------- 266 (848)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHH----------
Confidence 99999999999999999999999999999999999999999999999999999999999 66 9999
Q ss_pred hhhHHHhhhhhhhhhhccCcccc--------cccccCCcc---cccchhhHHHHHHHHHhhchhHHHHHhhcCCcchhHH
Q psy11360 245 SKRKVKRQKSILQNLIFGEEENG--------EDIKTKNIH---QTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLIT 313 (940)
Q Consensus 245 ~~~~~~~~~~~~~LLl~~~Ee~A--------~~ll~~~y~---~~gi~~~~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~ 313 (940)
||+||+||.| ++++|++|| +.|+|++.+|...|++.++|.|.+.|++++|+.++++
T Consensus 267 -------------lllf~~ee~afwmmaaiiedilp~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslit 333 (848)
T KOG2222|consen 267 -------------LLLFCEEENAFWMMAAIIEDILPANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLIT 333 (848)
T ss_pred -------------HHHHhcchhHHHHHHHHHHHhcCchhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehH
Confidence 9999999999 899999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccchhhHHHHHHHHHHhChHHHH-------HhhHHHHhcCCCHHHHHHHhhCCCCCCccchhhhhhhHHH
Q psy11360 314 LHWFLTLFASVVHFKILLRIWDLLFLDGSIVLF-------HSCEPVLVTLENSAEIFNALSDIPGDIVDIDNLLEVGAEI 386 (940)
Q Consensus 314 ~~WfltLF~~~lp~~~vlRIWD~fl~eG~~vlf-------k~~~~~Ll~~~d~~ei~~~L~~lp~~~~d~~~~~~~~~~~ 386 (940)
..||+|||+++|.+...+||||.||++|...+| |+.+.+|..+ - +..+..+.+
T Consensus 334 l~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~i~ilkmkeqdi~~i------a--------------ettensa~i 393 (848)
T KOG2222|consen 334 LHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLIIGILKMKEQDIKEI------A--------------ETTENSADI 393 (848)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHHHHHHHhhHHHHHHH------H--------------HhcccHHHH
Confidence 999999999999999999999999999999998 4444444433 0 001123445
Q ss_pred hhhccCCCCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhhcccccCCCccCCCCchH--HHhhhhhhccccee
Q psy11360 387 FNALSDIPGDIVDIDNLLEVSFSVSTSISQSLIDSHRRRHLAFLMSDQGALIGNPALSNNLPKQ--QLNRLGRILRSLFT 464 (940)
Q Consensus 387 ~~~~~~~p~~~~d~d~Li~~A~~~~~~is~~~i~~~r~~~~~~l~~~~~~~~~~~~~~~nL~k~--~rr~~~r~ks~~~~ 464 (940)
|++++++|.+++|++.+++.|-++-++||+-.|+++|++|.+.+|++||..+++++...|||++ +||++.++||.+..
T Consensus 394 f~als~ip~~vtdve~l~~~~~~~~~sis~~li~~~rkkh~a~lmadqg~~i~n~~a~~nlpkqq~~rrkl~ksksiie~ 473 (848)
T KOG2222|consen 394 FNALSDIPAEVTDVEKLFEQAGEFEFSISDHLIAEHRKKHLAVLMADQGHIIGNPAAAPNLPKQQLARRKLRKSKSIIEA 473 (848)
T ss_pred HHHHHhCCchhhhHHHHHHHHhhcccchhHHHHHHHHHHhHHhhhhcCCcccCCcccCCCCcHHHHHHHHHHhhHHHHHH
Confidence 5555555556669999999999999999999999999999999999999999999999999985 89999999999999
Q ss_pred eecccCCCchhhhcccCCCCCchhHhhHHHHhhcCCcccccCCccC-ccccCCCCCCCCCCCCCCccccccccccceEEE
Q psy11360 465 LAFGCFLGQTAVARQATPARPQILVDLREATCQIGRHFLTTDPRLS-HASLTPNYSPESHQSDHDAYADVSRSRQRRAKA 543 (940)
Q Consensus 465 llfg~~~~~~~~~k~k~~~~~E~~~dl~e~i~~~g~~f~~~~~~f~-sl~lv~~y~~~s~~~~~~~~~~~~~~~~~~a~A 543 (940)
++|..|..+..-.|+|||+|+|+++||+|+|.++||||++.+++.. .+.+..+|+++|+.+++.++....+.+..+|+|
T Consensus 474 ~~~~~dg~~~d~~knknirqteilvdlkeailki~r~fis~d~kl~~~i~~qadys~esh~kd~~nfik~~r~~~kraka 553 (848)
T KOG2222|consen 474 FFFRGDGEEADDLKNKNIRQTEILVDLKEAILKICRHFISCDEKLAGHICLQADYSPESHAKDHANFIKGARTGAKRAKA 553 (848)
T ss_pred HHhcCCcccccccccccchhhhHhHHHHHHHHHHhHHHeecchhhccceeeeccCCchhhhhhHHHHhhhhhhhhHHHHH
Confidence 8887773333349999999999999999999999999999998775 557999999999999999999988888889999
Q ss_pred eecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeecccccccccCCCCCccccccccccccchhh
Q psy11360 544 LLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQYSLAGDDSVTETITDLVRGTLCPA 623 (940)
Q Consensus 544 Lydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~~~~~~~~~~gd~s~se~it~lVRg~L~pA 623 (940)
|.||...+++||.|+++|+|+|++..|+.+|.|++||.+||||+.||+.++.+.+.+...|++..++++++++||.|+++
T Consensus 554 l~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellder~k~yt~~gddais~~itd~irg~la~a 633 (848)
T KOG2222|consen 554 LHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDERGKLYTIAGDDAISEEITDLIRGRLANA 633 (848)
T ss_pred HhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHhccceeeeccccccCHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCccccC--CCCccccchhhhhhhhhccccchhhhhhhhhhhccccccCCCCcCChhHHHHHHHHHHhhccccc
Q psy11360 624 LKQILSCGLKRRA--LGEVCHPWLFIEEVATREVEKDFTSVYSRLLLCKTYRLDEDGKVLTPEELLYRCVQAVNQSHDMA 701 (940)
Q Consensus 624 l~~ll~hGl~~~~--~~~~~h~W~~ie~~~~~~~~~~~~s~~~r~~l~~sf~ld~~g~~~t~~~~l~~~i~~i~~~h~~~ 701 (940)
+++++.||++.+. .+++.|||.|||.
T Consensus 634 ~k~~ldhgik~~a~~~s~~~hpw~fied---------------------------------------------------- 661 (848)
T KOG2222|consen 634 FKAFLDHGIKENAFLGSGAIHPWLFIED---------------------------------------------------- 661 (848)
T ss_pred HHHHHHccccccccccCcCCChhHHHHH----------------------------------------------------
Confidence 9999999999998 3478999999998
Q ss_pred cccccchhhHHHhhhhhhhhHHHHHHHHhcChhHHhhhccccccccCchHHHHhhhcccccCcccccCCCcCCCCCCCCC
Q psy11360 702 HVQMDVKFRSLICLGLNEQVLHLWLEVLCSCEPVVLKWYHPWSFISSPGWVQVKCDLRVLSQFPFNLSPDWELPPKKGQS 781 (940)
Q Consensus 702 ~~~~d~kf~afIc~~LN~~~L~~Wl~~l~~~~~~i~~~Y~p~sfl~~~~~~~~l~~L~~Ls~~~F~L~~d~~~~~~~~~~ 781 (940)
T Consensus 662 -------------------------------------------------------------------------------- 661 (848)
T KOG2222|consen 662 -------------------------------------------------------------------------------- 661 (848)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccchhccccccccchhhhhccccccCCCCCcCChhhHHHHHHHHHhhcccccccccccchhhhhhhhcccchhH
Q psy11360 782 QPLKDGVATREVEKDFTSVYSRLLLCKTYRLDEDGKVLTPEELLYRCVQAVNQSHDMAHVQMDVKFRSLICLGLNEQVLH 861 (940)
Q Consensus 782 ~~~~~~~~~~~~~~~~~s~~sr~~l~~~~~l~~~~~~~t~~~~l~~~i~~~~~~h~~~~~~~d~~~~~~~~~~ln~~~l~ 861 (940)
++.++++++|+|+||||+||++||||+|||++||+++|||+||.||.+|++++++||+|+|++||+||||||+|
T Consensus 662 ------~a~~~vekdf~svys~lvlcktyrldedgkiltpeellfr~vq~in~shd~~~a~~dvklrsli~lglneq~ih 735 (848)
T KOG2222|consen 662 ------AATREVEKDFESVYSRLVLCKTYRLDEDGKILTPEELLFRCVQAINDSHDAAHAHMDVKLRSLICLGLNEQCIH 735 (848)
T ss_pred ------HHHHHHHhhHHHHHHhhhhhhheecccCCcccCHHHHHHHHHHHHhcchhhhhhhhchhhhhheeecccHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC---hhhhhccccCcccccCcchhhhhhhhccccCcccccCCCCCCCC----CC------------------
Q psy11360 862 LWLEVLCSC---EPVVLKWYHPWSFISSPGWVQVKCDLRVLSQFPFNLSPDWELPP----RK------------------ 916 (940)
Q Consensus 862 ~w~~~~~~~---~~~~~~~y~~ws~~~~~g~~~~~~~l~~l~~~~f~l~~d~~~~~----~~------------------ 916 (940)
+|++++|+| .++++||||+|+|+.||||+||+|.||.||||+|||++||+||. ++
T Consensus 736 lw~dllca~tqhe~i~nk~yhswafi~sp~w~qikcdlrilsqfafnln~~~ei~gidk~kr~fvnglltsqkkkilstv 815 (848)
T KOG2222|consen 736 LWFDLLCAATQHEEIRNKWYHSWAFIDSPAWRQIKCDLRILSQFAFNLNMDFEIEGIDKKKRGFVNGLLTSQKKKILSTV 815 (848)
T ss_pred HHHHHHHhcccHHHHHHHHhhhhheecCccceeeehhHhHHhhhhhcCCccccccCcccccccccccchhhhhhhhhhhh
Confidence 999999999 78999999999999999999999999999999999999999994 21
Q ss_pred ---------CCCCchhhHHHhhhhhccccccCC
Q psy11360 917 ---------GQSQPLKDGVQDMLVKHHLFSWDL 940 (940)
Q Consensus 917 ---------~~~~~~~~~~~~~~~~~~~~~~~~ 940 (940)
+.-+|+||||+|||+|||||||||
T Consensus 816 vsssqdnkq~~eeplk~gv~dmlikhhlfswdl 848 (848)
T KOG2222|consen 816 VSSSQDNKQKEEEPLKDGVRDMLIKHHLFSWDL 848 (848)
T ss_pred cccccccccccccchhhhHHHHHHHHhhcccCC
Confidence 467899999999999999999997
No 2
>KOG3759|consensus
Probab=100.00 E-value=8e-46 Score=401.55 Aligned_cols=121 Identities=30% Similarity=0.602 Sum_probs=115.6
Q ss_pred ccccchhhhhccccccC-CCCCcCChhhHHHHHHHHHhhcccccccccccchhhhhhhhcccchhHHHHHHHhcChhhhh
Q psy11360 797 FTSVYSRLLLCKTYRLD-EDGKVLTPEELLYRCVQAVNQSHDMAHVQMDVKFRSLICLGLNEQVLHLWLEVLCSCEPVVL 875 (940)
Q Consensus 797 ~~s~~sr~~l~~~~~l~-~~~~~~t~~~~l~~~i~~~~~~h~~~~~~~d~~~~~~~~~~ln~~~l~~w~~~~~~~~~~~~ 875 (940)
|+.+|.| +|||+|.|| +||++|||||+||+|||+|+++|+|||||.|++||||||+|||||+|++||++||+|+++|+
T Consensus 500 y~~~PaR-KLSQSF~Ldvvgg~~VT~KQsLLtaI~mIlt~H~p~KRS~dah~KAfVcaaLNe~~Lv~WlnlI~~~~~lVe 578 (621)
T KOG3759|consen 500 YTDAPAR-KLSQSFALDVVGGTSVTPKQSLLTAIHMILTEHDPFKRSADAHLKAFVCAALNEQRLVSWLNLICKCGSLVE 578 (621)
T ss_pred cccChhh-hhhhcccccccCCeecchHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhH
Confidence 3445556 788899999 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCcchhhhhhhhccccCcccccCCCCCCCCCCCCCCch
Q psy11360 876 KWYHPWSFISSPGWVQVKCDLRVLSQFPFNLSPDWELPPRKGQSQPL 922 (940)
Q Consensus 876 ~~y~~ws~~~~~g~~~~~~~l~~l~~~~f~l~~d~~~~~~~~~~~~~ 922 (940)
.||+|||||++|||++.+..|+.|+.|+|+||||+|| |+|+||
T Consensus 579 t~Y~~wSYvArTGfe~~l~ll~~Ls~~~f~LPVDLA~----R~fknI 621 (621)
T KOG3759|consen 579 THYQPWSYVARTGFESALNLLSRLSSLKFSLPVDLAL----RQFKNI 621 (621)
T ss_pred hhcCcchHHHhhhHHHHHHHHHHHHhcccCCchHHHh----hhhccC
Confidence 9999999999999999999999999999999999999 999987
No 3
>KOG2058|consensus
Probab=100.00 E-value=5.8e-43 Score=393.15 Aligned_cols=298 Identities=33% Similarity=0.514 Sum_probs=251.8
Q ss_pred CCCCCCCcccccCCCCccccccccCCCCccchhHHHHHHHHHHhcCCCCCCCCcccccccccccc-ccCCChHHHHHHHh
Q psy11360 63 YRFDEFGFRVEEEDGPEQNSNKLLSEPFIEDPQHRLQWVAYLEFNSSSANSPGKEESEALTWDNL-GVISRTDKLRSMTR 141 (940)
Q Consensus 63 ~~~D~~GF~~~~~~~~~~~~~~~~~~~~~e~~~~~~kW~~~l~~~~~~~~~~~~~~~~~~~W~~~-~~~~~~~kLk~lir 141 (940)
..+|.|||.......+...+.+..++...-+..++.+|...++.+ . .|... .....+++||.+||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~k~~s~~~~~~~r~~~~~~l~~~~~-~-------------~~~~~~~~~~~s~elk~liR 154 (436)
T KOG2058|consen 89 NGFDQYSLQKLIGLPPSDGYLKWLSSYLAYEERRQLRWELELQSN-I-------------KLHSPNDFPPRSDELKRLIR 154 (436)
T ss_pred CcccccchhhcccCCcchhhhHHHHHhhhhhhhHHHHHHHHhhhh-h-------------cccccccccCCcHHHHHHHH
Confidence 468899998776655533344444433334456678899888743 2 22221 13567899999999
Q ss_pred cCCCCChhHHHHHHHhccHHHHhhCHHHHHHHHHhccCchhHHHHHHHHhhhhcCCCC-ccccCCCCCChhHHhhhhhhh
Q psy11360 142 QGIPHSLRPQLWLRLSGALEKKALSKIKYQDIVKASSSDALAFAKQIEKDLLRTMPTN-ACFSTFSSTGVPRLRRILRAL 220 (940)
Q Consensus 142 ~GIP~~lR~~vW~~Llg~~~~~~~~~~~Y~~l~~~~~~~~~~~~~qIekDl~RT~p~~-~~F~~~~~~~~~~L~rIL~Ay 220 (940)
+|||+++|+.||+.++|.... ...++.|+.++.......++..+||+.|+.||||++ +.|...++.++.+|+|||.||
T Consensus 155 kGiP~~~R~~VW~~~~g~~~~-~~~~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Ay 233 (436)
T KOG2058|consen 155 KGIPPELRGEVWWVLSGARRQ-LNYPGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAY 233 (436)
T ss_pred cCCChhhhhHHHHHHhcchhh-ccCchhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHH
Confidence 999999999999999993322 223899999999877766689999999999999999 899888888899999999999
Q ss_pred eeecCCCc---cc--ceecccCCccceehhhhHHHhhhhhhhhhhccC-cccc--------cccccCCcc---cccchhh
Q psy11360 221 AWLFPDIG---GV--VNALDFGSRGWWFESKRKVKRQKSILQNLIFGE-EENG--------EDIKTKNIH---QTGIQAD 283 (940)
Q Consensus 221 a~~np~iG---gm--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~-Ee~A--------~~ll~~~y~---~~gi~~~ 283 (940)
|++||+|| || +||+ +|++|+ ||+| ++++|. || |.|.++|
T Consensus 234 a~hNp~vGYCQGmNflAal-----------------------lLL~~~~EE~AFW~Lv~iie~~lp~-Yyt~nL~g~qvD 289 (436)
T KOG2058|consen 234 ARHNPSVGYCQGMNFLAAL-----------------------LLLLMPSEEDAFWMLVALIENYLPR-YYTPNLIGSQVD 289 (436)
T ss_pred HhhCCCCcchhhHHHHHHH-----------------------HHHhcCChHHHHHHHHHHHHHhchh-hcCchhhhhhcc
Confidence 99999999 66 9999 999999 8889 788888 66 9999999
Q ss_pred HHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHHHH-------HhhHHHHhcC
Q psy11360 284 QKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLF-------HSCEPVLVTL 356 (940)
Q Consensus 284 ~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~vlf-------k~~~~~Ll~~ 356 (940)
|+||+.+|++.+|+|+.||+.++++..+++++||||+|++.+|.++++||||++|+||.+++| +.++++++++
T Consensus 290 Q~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~ee~il~~ 369 (436)
T KOG2058|consen 290 QKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKHEEEILKE 369 (436)
T ss_pred HHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999998 7899999999
Q ss_pred CCHHHHHHHhhCCCCCCccchhhhhhhHHHhhhccCCCCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy11360 357 ENSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGDIVDIDNLLEVSFSVSTSISQSLIDSHRRRH 426 (940)
Q Consensus 357 ~d~~ei~~~L~~lp~~~~d~~~~~~~~~~~~~~~~~~p~~~~d~d~Li~~A~~~~~~is~~~i~~~r~~~ 426 (940)
.+..+++++++.++..+. +.+ +.||...++.+...+...|..|
T Consensus 370 ~~~~~i~~~~~~~~~~~~------------------------~~~---~~~f~~~~~~~~~~~~~~~~~~ 412 (436)
T KOG2058|consen 370 DSSKEILRVLPDLTKRSI------------------------DPD---QDAFGLANKLTISKIPIQQVLQ 412 (436)
T ss_pred CCHHHHHHHHHHHHHHhh------------------------hhh---hhhhhcccccccccCchhhhhH
Confidence 999999999998877654 444 8888887778888888777766
No 4
>KOG4347|consensus
Probab=100.00 E-value=4.4e-34 Score=325.47 Aligned_cols=312 Identities=26% Similarity=0.421 Sum_probs=261.9
Q ss_pred CCCCCCCcccccCCCCccccccccCCCCccchhHHHHHHHHHHhcCCCCCCCCccccccccccccccCCChHHHHHHHhc
Q psy11360 63 YRFDEFGFRVEEEDGPEQNSNKLLSEPFIEDPQHRLQWVAYLEFNSSSANSPGKEESEALTWDNLGVISRTDKLRSMTRQ 142 (940)
Q Consensus 63 ~~~D~~GF~~~~~~~~~~~~~~~~~~~~~e~~~~~~kW~~~l~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~kLk~lir~ 142 (940)
...+.+||...-.+++.+. . ..+......|.+++...+.+. -..+..+++++++.
T Consensus 147 ~~~~~~~~~~~~~~~~d~~---~-----lre~~k~k~W~~~f~~~G~~~-----------------~~~qt~~~~Klv~~ 201 (671)
T KOG4347|consen 147 SGESALGFGEKGKYKIDPR---A-----LREWAKEKFWKKYFIKDGPNM-----------------NQIQTILLRKLLYN 201 (671)
T ss_pred cccchhcccccCCCCCChH---H-----HHHHHHHHHHHHHHHHhcccc-----------------cHHHHHHHHHHHHH
Confidence 3467777755444433221 0 123344456999987665511 25678999999999
Q ss_pred CCCCChhHHHHHHHhccHHHHhhCHHHHHHHHHhccCchhHHHHHHHHhhhhcCCCCccccCCCCCChhHHhhhhhhhee
Q psy11360 143 GIPHSLRPQLWLRLSGALEKKALSKIKYQDIVKASSSDALAFAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILRALAW 222 (940)
Q Consensus 143 GIP~~lR~~vW~~Llg~~~~~~~~~~~Y~~l~~~~~~~~~~~~~qIekDl~RT~p~~~~F~~~~~~~~~~L~rIL~Aya~ 222 (940)
|||..+|+++|..++|+-..+..++++|.++++...+..+.+.+.||+|++|..|+|+-|+. ++|+.+|||||.|||+
T Consensus 202 gipe~~rgeiW~l~sGav~~~l~~~Geygkll~~~~G~~~~a~eEIE~Dl~rsLpEhpA~Q~--e~gi~aLR~vL~Aya~ 279 (671)
T KOG4347|consen 202 GFPEDPRGEIWYLASGAVASLLLNPGEYGKLLHSVTGKRSVATEEIEPDLGRSLPEHPAFQS--EPGIAALRRVLTAYAW 279 (671)
T ss_pred hcCCChHHHHHHhhhHHHHHhhcCcHHhhhhhhcccCCcccccccccCCCCCCCCcchhhhC--CCchhhHHHHHHhhhc
Confidence 99999999999999999999999999999999998887778899999999999999999997 8999999999999999
Q ss_pred ecCCCc---cc--ceecccCCccceehhhhHHHhhhhhhhhhhccCcccc--------cccccCCcc---cccchhhHHH
Q psy11360 223 LFPDIG---GV--VNALDFGSRGWWFESKRKVKRQKSILQNLIFGEEENG--------EDIKTKNIH---QTGIQADQKV 286 (940)
Q Consensus 223 ~np~iG---gm--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~Ee~A--------~~ll~~~y~---~~gi~~~~~v 286 (940)
.||+|| -| +++. +|+++.||+| +.++| +|| +.|...+|.|
T Consensus 280 ~Np~vGYcQaMNIV~s~-----------------------lll~~~EEeafwll~~lce~~ip-~yys~~vvGtliDQ~v 335 (671)
T KOG4347|consen 280 SNPEVGYCQAMNIVGSE-----------------------LLLFCKEEEAFWLLSKLCEIYIP-DYYSKTVVGTLIDQSV 335 (671)
T ss_pred cCCchhHHHHHHHHHHh-----------------------hhhhhccchHHHHHHHHHHHhcc-cccchhhhhhHHHHHH
Confidence 999999 34 6777 9999999999 44444 555 9999999999
Q ss_pred HHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHHHH-------HhhHHHHhcCCCH
Q psy11360 287 LRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLF-------HSCEPVLVTLENS 359 (940)
Q Consensus 287 ~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~vlf-------k~~~~~Ll~~~d~ 359 (940)
|+.|++..+|.|++|+..+| ...++.+.||+++|...+|++..+||-|+||++|.++|| +.+++.|++++|.
T Consensus 336 fe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~rvlFqiaLail~~N~~~il~~~dD 414 (671)
T KOG4347|consen 336 FEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPRVLFQIALAILKQNAERILSATDD 414 (671)
T ss_pred HHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccHHHHHHHHHHHHhhHHHhcccCCc
Confidence 99999999999999999999 799999999999999999999999999999999999999 6789999999999
Q ss_pred HHHHHHhhCCCCCCccchhhhhhhHHHhhhccCCCCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhhcc
Q psy11360 360 AEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGDIVDIDNLLEVSFSVSTSISQSLIDSHRRRHLAFLMSDQG 435 (940)
Q Consensus 360 ~ei~~~L~~lp~~~~d~~~~~~~~~~~~~~~~~~p~~~~d~d~Li~~A~~~~~~is~~~i~~~r~~~~~~l~~~~~ 435 (940)
.+++..+++.-..+.+.+.-..... ..+.+.+..|+.+||+.++.||++.|+.+|.||+..++...+
T Consensus 415 ge~~~vl~~y~~~i~~~~~~~~~~~---------~~~~~~i~~Ll~~ay~kFg~it~e~ie~~R~K~r~~v~q~le 481 (671)
T KOG4347|consen 415 GEAMMVLGNYFDSIYNGDYPDESDH---------ASDSIEIQDLLATAYEKFGDITDELIEHLRKKHRLGVLQSLE 481 (671)
T ss_pred hHHHHHHHHHHHhccCCCCCccccc---------hhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988777765553221111 122334999999999999999999999999999999985443
No 5
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=99.96 E-value=5.6e-30 Score=266.47 Aligned_cols=179 Identities=38% Similarity=0.587 Sum_probs=158.2
Q ss_pred HhcCCCCChhHHHHHHHhccHHHHhh-CHHHHHHHHHhccCchhHHHHHHHHhhhhcCCCCccccCCCCCChhHHhhhhh
Q psy11360 140 TRQGIPHSLRPQLWLRLSGALEKKAL-SKIKYQDIVKASSSDALAFAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILR 218 (940)
Q Consensus 140 ir~GIP~~lR~~vW~~Llg~~~~~~~-~~~~Y~~l~~~~~~~~~~~~~qIekDl~RT~p~~~~F~~~~~~~~~~L~rIL~ 218 (940)
+|+|||+++|+.+|+.++|+...... .++.|++++++.........+||++||.||+|++.+|....+.+++.|+|||.
T Consensus 1 ~~~Gip~~~R~~vW~~ll~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ 80 (199)
T smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPKDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80 (199)
T ss_pred CCCCCCHHHHHHHHHHHhCCchhhhcccchHHHHHHHhhcCCChhhHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHH
Confidence 37899999999999999999766543 47899999988765544567999999999999999999766789999999999
Q ss_pred hheeecCCCc---cc--ceecccCCccceehhhhHHHhhhhhhhhhhccC-cccc--------cccccCCcc---cccch
Q psy11360 219 ALAWLFPDIG---GV--VNALDFGSRGWWFESKRKVKRQKSILQNLIFGE-EENG--------EDIKTKNIH---QTGIQ 281 (940)
Q Consensus 219 Aya~~np~iG---gm--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~-Ee~A--------~~ll~~~y~---~~gi~ 281 (940)
||+.+||++| || |||+ +|++++ |++| ....+ .|| +.|+.
T Consensus 81 ~~~~~~p~~gY~QGm~~i~~~-----------------------ll~~~~~e~~af~~~~~l~~~~~~-~~~~~~~~~~~ 136 (199)
T smart00164 81 AYALYNPEVGYCQGMNFLAAP-----------------------LLLVMPDEEDAFWCLVKLMERYGP-NFYLPDMSGLQ 136 (199)
T ss_pred HHHHHCCCCceeccHHHHHHH-----------------------HHHhcCCHHHHHHHHHHHHHHhCc-ccCCCChHHHH
Confidence 9999999999 88 9999 888884 8888 23333 445 66789
Q ss_pred hhHHHHHHHHHhhchhHHHHHhh-cCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhCh
Q psy11360 282 ADQKVLRSLVASGLPQLEVSLLQ-HDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGS 342 (940)
Q Consensus 282 ~~~~v~~~Ll~~~~P~L~~hL~~-~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~ 342 (940)
..+.+++.++++.+|+|++||++ .|+++.+|+++||+|+|++++|++.++||||+||+||.
T Consensus 137 ~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 137 LDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999996 99999999999999999999999999999999999995
No 6
>KOG2223|consensus
Probab=99.96 E-value=1.3e-29 Score=275.29 Aligned_cols=266 Identities=22% Similarity=0.396 Sum_probs=209.7
Q ss_pred ccccccccCCCCccchhHHHHHHHHHHhcCCCCCCCCcc------------c-----------cccccccccccCCChHH
Q psy11360 79 EQNSNKLLSEPFIEDPQHRLQWVAYLEFNSSSANSPGKE------------E-----------SEALTWDNLGVISRTDK 135 (940)
Q Consensus 79 ~~~~~~~~~~~~~e~~~~~~kW~~~l~~~~~~~~~~~~~------------~-----------~~~~~W~~~~~~~~~~k 135 (940)
+..+..+.+++..|...|+.....|++.....+....++ + -...+|+. +..+++
T Consensus 217 edRPS~LPaKsaeEa~kHrqeyeei~~qAkkre~k~~ker~k~~eer~r~ee~~~~~v~vW~~eILpnWe~---m~~SrR 293 (586)
T KOG2223|consen 217 EDRPSNLPAKSAEEAKKHRQEYEEIVKQAKKRERKEAKERKKMVEERNRLEERIAYAVNVWENEILPNWED---MLKSRR 293 (586)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccchHH---HHhhHH
Confidence 444556667666666777777777766443322110000 0 01124554 678899
Q ss_pred HHHHHhcCCCCChhHHHHHHHhccHHHHhhCHHHHHHH------------HHhcc---CchhHHHHHHHHhhhhcCCCCc
Q psy11360 136 LRSMTRQGIPHSLRPQLWLRLSGALEKKALSKIKYQDI------------VKASS---SDALAFAKQIEKDLLRTMPTNA 200 (940)
Q Consensus 136 Lk~lir~GIP~~lR~~vW~~Llg~~~~~~~~~~~Y~~l------------~~~~~---~~~~~~~~qIekDl~RT~p~~~ 200 (940)
.+.++|.|||+++||+||...+|..... ....|... -++.. .+......+|+.|+.||||+..
T Consensus 294 ~relWwQGiP~~VRGkvW~laIGNel~i--t~elfd~~la~Aker~ak~~aeq~~~sa~~re~sv~~i~LDisrTfpsl~ 371 (586)
T KOG2223|consen 294 VRELWWQGIPPSVRGKVWSLAIGNELNI--TYELFDIALARAKEREAKSLAEQMSNSAADREASVELIKLDISRTFPSLS 371 (586)
T ss_pred HHHHHHccCChhhcchhhHhhhCccccc--CHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchhheeechhccCccee
Confidence 9999999999999999999999964221 23333333 22222 1223567889999999999999
Q ss_pred cccCCCCCChhHHhhhhhhheeecCCCc---cc--ceecccCCccceehhhhHHHhhhhhhhhhhccCcccc----cccc
Q psy11360 201 CFSTFSSTGVPRLRRILRALAWLFPDIG---GV--VNALDFGSRGWWFESKRKVKRQKSILQNLIFGEEENG----EDIK 271 (940)
Q Consensus 201 ~F~~~~~~~~~~L~rIL~Aya~~np~iG---gm--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~Ee~A----~~ll 271 (940)
.|+. +++..+.|..||.||+.|.|||| || |||+ ||+.|++.+| .+++
T Consensus 372 iFqk-~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAv-----------------------Lllnmd~~~AFiafANLL 427 (586)
T KOG2223|consen 372 IFQK-GGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAV-----------------------LLLNMDLADAFIAFANLL 427 (586)
T ss_pred eecc-CCchHHHHHHHhhhheeecCccccccchHHHHHH-----------------------HHHcCCcHHHHHHHHHHh
Confidence 9987 68999999999999999999999 87 9999 9999999999 4555
Q ss_pred cC----Ccc---cccchhhHHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHH
Q psy11360 272 TK----NIH---QTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIV 344 (940)
Q Consensus 272 ~~----~y~---~~gi~~~~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~v 344 (940)
.+ -|| ...+..+...|+..+++.+|+|+.||+++++.+.+|.+.|+.+||+..+|+++++||||+|+.+|..+
T Consensus 428 dkp~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeF 507 (586)
T KOG2223|consen 428 DKPCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEF 507 (586)
T ss_pred ccHHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHH
Confidence 43 344 44556777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-------HhhHHHHhcCCCHHHHHHHhhCCCCCCc
Q psy11360 345 LF-------HSCEPVLVTLENSAEIFNALSDIPGDIV 374 (940)
Q Consensus 345 lf-------k~~~~~Ll~~~d~~ei~~~L~~lp~~~~ 374 (940)
+| ++.++.|+.| |+..+.++|..+|.++.
T Consensus 508 lfr~~lgIlklyepkLl~m-Df~~~~qfLtklp~dL~ 543 (586)
T KOG2223|consen 508 LFRTALGILKLYEPKLLVM-DFIHVAQFLTKLPEDLT 543 (586)
T ss_pred HHHHHHHHHHHccchHhhh-hHHHHHHHHHhCcccCC
Confidence 98 8889999886 79999999999999887
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.95 E-value=7e-28 Score=284.11 Aligned_cols=220 Identities=33% Similarity=0.465 Sum_probs=187.9
Q ss_pred CCChHHHHHHHhcCCCCChhHHHHHHHhccHHHHhhCHHHHHHHHHhcc--Cchh-HHHHHHHHhhhhcCCCCccccCCC
Q psy11360 130 ISRTDKLRSMTRQGIPHSLRPQLWLRLSGALEKKALSKIKYQDIVKASS--SDAL-AFAKQIEKDLLRTMPTNACFSTFS 206 (940)
Q Consensus 130 ~~~~~kLk~lir~GIP~~lR~~vW~~Llg~~~~~~~~~~~Y~~l~~~~~--~~~~-~~~~qIekDl~RT~p~~~~F~~~~ 206 (940)
.....+++.+++.|||.++|+.+|..++|........++.|..+..... .... ....+|++||.||||.+..|+...
T Consensus 199 ~~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~Dl~rt~~~~~~f~~~~ 278 (496)
T COG5210 199 PVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERLLNLHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEI 278 (496)
T ss_pred hhhHHHHHHHHHhcCChHhhhhhHHHHhccchhhccCchHHHHHHHHHHhcCCCcHHHHHHHHccccccccccccccCcc
Confidence 5577999999999999999999999999998887778899998876432 2222 469999999999999999999755
Q ss_pred CCChhHHhhhhhhheeecCCCc---cc--ceecccCCccceehhhhHHHhhhhhhhhhhccC-cccc--------c-ccc
Q psy11360 207 STGVPRLRRILRALAWLFPDIG---GV--VNALDFGSRGWWFESKRKVKRQKSILQNLIFGE-EENG--------E-DIK 271 (940)
Q Consensus 207 ~~~~~~L~rIL~Aya~~np~iG---gm--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~-Ee~A--------~-~ll 271 (940)
+.....|+|||.||+++||++| || |||. +|++|+ ||+| . ..+
T Consensus 279 s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~-----------------------ll~~~~~Ee~AF~~l~~L~~~~~l 335 (496)
T COG5210 279 SIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAP-----------------------LLLVLESEEQAFWCLVKLLKNYGL 335 (496)
T ss_pred cccHHHHHHHHHHHHhcCCCCceeccHHHHHHH-----------------------HHHHhhhhHHHHHHHHHHHHhccc
Confidence 4444469999999999999999 88 8888 999999 8888 2 234
Q ss_pred cCCcc--cccchhhHHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHHHH---
Q psy11360 272 TKNIH--QTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLF--- 346 (940)
Q Consensus 272 ~~~y~--~~gi~~~~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~vlf--- 346 (940)
+..|- +.|++.++.+++.+++..+|+||.||...|+...+|+++||+|+|++.||++.++||||++|+||..++|
T Consensus 336 ~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~ 415 (496)
T COG5210 336 PGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLA 415 (496)
T ss_pred hhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 43333 9999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ----HhhHHHHhcCCCHHHHHHHhhCCCCC
Q psy11360 347 ----HSCEPVLVTLENSAEIFNALSDIPGD 372 (940)
Q Consensus 347 ----k~~~~~Ll~~~d~~ei~~~L~~lp~~ 372 (940)
+..+..++.+.+...+...+.++...
T Consensus 416 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (496)
T COG5210 416 LAILKLLRDKLLKLDSDELLDLLLKQLFLH 445 (496)
T ss_pred HHHHHhhhhhhhccCchhHHHHHHHhhhhh
Confidence 55677777777777777666665443
No 8
>KOG3759|consensus
Probab=99.95 E-value=7.4e-29 Score=269.93 Aligned_cols=171 Identities=30% Similarity=0.575 Sum_probs=163.7
Q ss_pred cccccccccccchhhhHHHHhcCccccCC-----------------------CCccccchhhhhhhhhccccchhhhhhh
Q psy11360 609 TETITDLVRGTLCPALKQILSCGLKRRAL-----------------------GEVCHPWLFIEEVATREVEKDFTSVYSR 665 (940)
Q Consensus 609 se~it~lVRg~L~pAl~~ll~hGl~~~~~-----------------------~~~~h~W~~ie~~~~~~~~~~~~s~~~r 665 (940)
.++++..||+++|.+++++++|||..+.. +.+||||++|.+||..++|++|+++|+|
T Consensus 427 ~~Eltt~VRK~l~~alr~Ll~HGl~~~s~~~S~~m~P~~~cl~~~~saf~~~~~amH~Wel~l~yY~lK~Gr~y~~~PaR 506 (621)
T KOG3759|consen 427 KDELTTAVRKELCVALRDLLAHGLYASSVGMSLKMAPIAGCLPAKSSAFSSAPEAMHPWELFLYYYNLKTGRDYTDAPAR 506 (621)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccCccchhhhhcccccccCCCchhhccCCcccchHHHHHHHHhhccccccccChhh
Confidence 35688999999999999999999998762 2479999999999999999999999999
Q ss_pred hhhhccccccC-CCCcCChhHHHHHHHHHHhhccccccccccchhhHHHhhhhhhhhHHHHHHHHhcChhHHhhhccccc
Q psy11360 666 LLLCKTYRLDE-DGKVLTPEELLYRCVQAVNQSHDMAHVQMDVKFRSLICLGLNEQVLHLWLEVLCSCEPVVLKWYHPWS 744 (940)
Q Consensus 666 ~~l~~sf~ld~-~g~~~t~~~~l~~~i~~i~~~h~~~~~~~d~kf~afIc~~LN~~~L~~Wl~~l~~~~~~i~~~Y~p~s 744 (940)
+ |||||.||+ +|.++||||+|+.+|+.|.++|+++|||.|++||||||+|||+|+|+.|+++||+|.++|+.||+|||
T Consensus 507 K-LSQSF~Ldvvgg~~VT~KQsLLtaI~mIlt~H~p~KRS~dah~KAfVcaaLNe~~Lv~WlnlI~~~~~lVet~Y~~wS 585 (621)
T KOG3759|consen 507 K-LSQSFALDVVGGTSVTPKQSLLTAIHMILTEHDPFKRSADAHLKAFVCAALNEQRLVSWLNLICKCGSLVETHYQPWS 585 (621)
T ss_pred h-hhhcccccccCCeecchHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHhhcCcch
Confidence 7 999999998 58899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHhhhcccccCcccccCCCcCCCCCCCC
Q psy11360 745 FISSPGWVQVKCDLRVLSQFPFNLSPDWELPPKKGQ 780 (940)
Q Consensus 745 fl~~~~~~~~l~~L~~Ls~~~F~L~~d~~~~~~~~~ 780 (940)
|+++|||++++..|+.|+.|.|+||||+++|+|+++
T Consensus 586 YvArTGfe~~l~ll~~Ls~~~f~LPVDLA~R~fknI 621 (621)
T KOG3759|consen 586 YVARTGFESALNLLSRLSSLKFSLPVDLALRQFKNI 621 (621)
T ss_pred HHHhhhHHHHHHHHHHHHhcccCCchHHHhhhhccC
Confidence 999999999999999999999999999999999985
No 9
>KOG2222|consensus
Probab=99.92 E-value=2.9e-26 Score=250.43 Aligned_cols=126 Identities=70% Similarity=1.272 Sum_probs=121.1
Q ss_pred ccccchhhhhhhhhhhccccccCCCCcCChhHHHHHHHHHHhhccccccccccchhhHHHhhhhhhhhHHHHHHHHhcC-
Q psy11360 654 EVEKDFTSVYSRLLLCKTYRLDEDGKVLTPEELLYRCVQAVNQSHDMAHVQMDVKFRSLICLGLNEQVLHLWLEVLCSC- 732 (940)
Q Consensus 654 ~~~~~~~s~~~r~~l~~sf~ld~~g~~~t~~~~l~~~i~~i~~~h~~~~~~~d~kf~afIc~~LN~~~L~~Wl~~l~~~- 732 (940)
++++.|+|+|+|.+||+++.||.+|+++||++.|+++|+.||.+|+..+++||+|.|++||+|||+|++|.|+.+||.|
T Consensus 666 ~vekdf~svys~lvlcktyrldedgkiltpeellfr~vq~in~shd~~~a~~dvklrsli~lglneq~ihlw~dllca~t 745 (848)
T KOG2222|consen 666 EVEKDFESVYSRLVLCKTYRLDEDGKILTPEELLFRCVQAINDSHDAAHAHMDVKLRSLICLGLNEQCIHLWFDLLCAAT 745 (848)
T ss_pred HHHhhHHHHHHhhhhhhheecccCCcccCHHHHHHHHHHHHhcchhhhhhhhchhhhhheeecccHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --hhHHhhhccccccccCchHHHHhhhcccccCcccccCCCcCCCCCCC
Q psy11360 733 --EPVVLKWYHPWSFISSPGWVQVKCDLRVLSQFPFNLSPDWELPPKKG 779 (940)
Q Consensus 733 --~~~i~~~Y~p~sfl~~~~~~~~l~~L~~Ls~~~F~L~~d~~~~~~~~ 779 (940)
..++++||++|||+++|+|+|+.|.|+-||+|.|+|..|||+.-...
T Consensus 746 qhe~i~nk~yhswafi~sp~w~qikcdlrilsqfafnln~~~ei~gidk 794 (848)
T KOG2222|consen 746 QHEEIRNKWYHSWAFIDSPAWRQIKCDLRILSQFAFNLNMDFEIEGIDK 794 (848)
T ss_pred cHHHHHHHHhhhhheecCccceeeehhHhHHhhhhhcCCccccccCccc
Confidence 67999999999999999999999999999999999999999984444
No 10
>KOG4436|consensus
Probab=99.91 E-value=3e-24 Score=248.07 Aligned_cols=245 Identities=25% Similarity=0.391 Sum_probs=204.1
Q ss_pred CCChHHHHHHHhcCCCCChhHHHHHHHhccHHHHhh-------CHHHHHHHHHhccCchhHHHHHHHHhhhhcCCCCccc
Q psy11360 130 ISRTDKLRSMTRQGIPHSLRPQLWLRLSGALEKKAL-------SKIKYQDIVKASSSDALAFAKQIEKDLLRTMPTNACF 202 (940)
Q Consensus 130 ~~~~~kLk~lir~GIP~~lR~~vW~~Llg~~~~~~~-------~~~~Y~~l~~~~~~~~~~~~~qIekDl~RT~p~~~~F 202 (940)
....+++...++.|+|.+-|+.+|..|.-....+.. ...-|+.++++-. +.-+.|-.|+.||||+|++|
T Consensus 564 k~d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~~~l~~~kr~~~~p~~~llkqLt----e~qhAi~idlgrtfp~h~~~ 639 (948)
T KOG4436|consen 564 KKDMEDLHSALRTGVPRSRRGEIWTFLAEQHSLNHALPDKKRPPDFPYKELLKQLT----EQQHAILIDLGRTFPTHPYF 639 (948)
T ss_pred cccHHHHHHHHHccCchhhhHHHHHHHHHHHHHhccCCcccCCCCCChHHHHHHHH----HHHHHHHHhhccccCCCHHH
Confidence 346789999999999999999999999876543322 2234888877643 45678999999999999999
Q ss_pred cCCCCCChhHHhhhhhhheeecCCCc-----ccceecccCCccceehhhhHHHhhhhhhhhhhccCcccccccc------
Q psy11360 203 STFSSTGVPRLRRILRALAWLFPDIG-----GVVNALDFGSRGWWFESKRKVKRQKSILQNLIFGEEENGEDIK------ 271 (940)
Q Consensus 203 ~~~~~~~~~~L~rIL~Aya~~np~iG-----gmIaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~Ee~A~~ll------ 271 (940)
+..-+.|+..|+|+|.||+..+|++| ++|||+ ||++|+||+|..++
T Consensus 640 ~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gv-----------------------lllh~~e~~afellk~LM~~ 696 (948)
T KOG4436|consen 640 SDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGV-----------------------LLLHMSEENAFELLKFLMFD 696 (948)
T ss_pred HhhccccHHHHHHHHHHhcccCccccccCcchhhhhh-----------------------hHhhcchhhHHHHHHHHHHH
Confidence 99889999999999999999999999 679999 99999999993332
Q ss_pred ---cCCcc--cccchhhHHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHHHH
Q psy11360 272 ---TKNIH--QTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLF 346 (940)
Q Consensus 272 ---~~~y~--~~gi~~~~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~vlf 346 (940)
..-|- |..++.++..+..+++.+.|+||.|+++++|.|++|+.+||+|+|+..||...+.|++|++|.+|..++|
T Consensus 697 r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tevif 776 (948)
T KOG4436|consen 697 RGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEVIF 776 (948)
T ss_pred HhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccchhh
Confidence 22333 7788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-------hhHHHHhcCCCHHHHHHHhhCCCCCCccchhhhhhhHHHhhhccCCCCCCCCHHHHHHHHHhccCCCCHHHH
Q psy11360 347 H-------SCEPVLVTLENSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGDIVDIDNLLEVSFSVSTSISQSLI 419 (940)
Q Consensus 347 k-------~~~~~Ll~~~d~~ei~~~L~~lp~~~~d~~~~~~~~~~~~~~~~~~p~~~~d~d~Li~~A~~~~~~is~~~i 419 (940)
| +++..|++.+++++|.++++++-..+. ....+.++.+.|+.- ..++|
T Consensus 777 K~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p~~~----------------------~~emeki~~qvf~mD---i~kql 831 (948)
T KOG4436|consen 777 KVALSLLSVHKQLLLEKDNFEEIVDFLKTTLPKME----------------------HTEMEKIIKQVFEMD---ISKQL 831 (948)
T ss_pred hhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhhhhh----------------------HHHHHHHHHHHHhhh---HHHHH
Confidence 4 456678999999999999998765543 135677888888762 23455
Q ss_pred HHHHHHH
Q psy11360 420 DSHRRRH 426 (940)
Q Consensus 420 ~~~r~~~ 426 (940)
.++.-+|
T Consensus 832 ~eykvey 838 (948)
T KOG4436|consen 832 AEYKVEY 838 (948)
T ss_pred HHHHHHH
Confidence 5555544
No 11
>KOG1092|consensus
Probab=99.91 E-value=4.1e-25 Score=241.18 Aligned_cols=251 Identities=24% Similarity=0.323 Sum_probs=187.6
Q ss_pred cCCChHHHHHHHhcCCCCChhHHHHHHHhccHHHH--------hhCHHHHHHHHHhccC------chhHHHHHHHHhhhh
Q psy11360 129 VISRTDKLRSMTRQGIPHSLRPQLWLRLSGALEKK--------ALSKIKYQDIVKASSS------DALAFAKQIEKDLLR 194 (940)
Q Consensus 129 ~~~~~~kLk~lir~GIP~~lR~~vW~~Llg~~~~~--------~~~~~~Y~~l~~~~~~------~~~~~~~qIekDl~R 194 (940)
....-++||+++|.|||..+|+.+|+.++|+.... +.....|.+++.+... ......+||..|++|
T Consensus 174 ~~id~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~~d~~rQI~id~pr 253 (484)
T KOG1092|consen 174 PIIDLEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNGDEDQDTWRQIPIDIPR 253 (484)
T ss_pred ccccHHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCccccCccccccccCCCC
Confidence 45677999999999999999999999999974211 2234557777665432 223678999999999
Q ss_pred cCCCCccccCCCCCChhHHhhhhhhheeecCCCc---cc-------ceecccCCccceehhhhHHHhhhhhhhhhhccCc
Q psy11360 195 TMPTNACFSTFSSTGVPRLRRILRALAWLFPDIG---GV-------VNALDFGSRGWWFESKRKVKRQKSILQNLIFGEE 264 (940)
Q Consensus 195 T~p~~~~F~~~~~~~~~~L~rIL~Aya~~np~iG---gm-------Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~E 264 (940)
|.|....|.. ..-|+.+.|||..+|.++|..| |. +++.. +.|+-.. .+....-..+ +++
T Consensus 254 m~p~~~l~q~--~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl---~e~l~~~---~~~~~~d~~~---l~~ 322 (484)
T KOG1092|consen 254 MNPHIPLFQQ--KIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFL---SEYLGPI---MDVESIDMSL---LPA 322 (484)
T ss_pred CCccccchhh--HHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhh---HhhcCcc---ccccccchhh---ccH
Confidence 9999999986 6779999999999999999999 32 22220 0111000 1111111111 222
Q ss_pred ccc-----------cccc---cCCcc--cccchhhHHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchh
Q psy11360 265 ENG-----------EDIK---TKNIH--QTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFK 328 (940)
Q Consensus 265 e~A-----------~~ll---~~~y~--~~gi~~~~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~ 328 (940)
|.+ .+++ ..+|. ++||+...+.|+.|++..++.|++||+++|++..+|+|+||.|||.++||+.
T Consensus 323 E~~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~ 402 (484)
T KOG1092|consen 323 ENAEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLR 402 (484)
T ss_pred HHHhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccch
Confidence 222 1222 23444 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhChHH---HHHhhHHHHhc------CCCHHHHHHHhhCCCCCCccchhhhhhhHHHhhhccCCCCCCCC
Q psy11360 329 ILLRIWDLLFLDGSIV---LFHSCEPVLVT------LENSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGDIVD 399 (940)
Q Consensus 329 ~vlRIWD~fl~eG~~v---lfk~~~~~Ll~------~~d~~ei~~~L~~lp~~~~d~~~~~~~~~~~~~~~~~~p~~~~d 399 (940)
.++|+||.|+.|+..+ ...+|.+.|++ -.||.+++-+||++|..-|+.. +
T Consensus 403 ~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ~~ilfLQnlPT~~W~d~---------------------e 461 (484)
T KOG1092|consen 403 CTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQELILFLQNLPTHNWSDR---------------------E 461 (484)
T ss_pred hHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccHH---------------------H
Confidence 9999999999997644 22455444433 2589999999999999988444 8
Q ss_pred HHHHHHHHHhcc
Q psy11360 400 IDNLLEVSFSVS 411 (940)
Q Consensus 400 ~d~Li~~A~~~~ 411 (940)
++.|+..||...
T Consensus 462 IellLseA~~~k 473 (484)
T KOG1092|consen 462 IELLLSEAFRLK 473 (484)
T ss_pred HHHHHHHHHHHH
Confidence 899999999763
No 12
>KOG4567|consensus
Probab=99.88 E-value=2.5e-22 Score=212.37 Aligned_cols=242 Identities=24% Similarity=0.353 Sum_probs=177.8
Q ss_pred CChHHHHHHHhcCCC--CChhHHHHHHHhccHHHH--------hhCHHHHHHHHHhcc--------------C-------
Q psy11360 131 SRTDKLRSMTRQGIP--HSLRPQLWLRLSGALEKK--------ALSKIKYQDIVKASS--------------S------- 179 (940)
Q Consensus 131 ~~~~kLk~lir~GIP--~~lR~~vW~~Llg~~~~~--------~~~~~~Y~~l~~~~~--------------~------- 179 (940)
.+-+++++++..|+| .++|+.+|++++|+.... ++....|...++... +
T Consensus 23 id~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhP 102 (370)
T KOG4567|consen 23 IDLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHP 102 (370)
T ss_pred hhHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCC
Confidence 445899999999999 589999999999985322 223445665543311 0
Q ss_pred -------------chhHHHHHHHHhhhhcCCCCccccCCCCC-------------------------ChhHHhhhhhhhe
Q psy11360 180 -------------DALAFAKQIEKDLLRTMPTNACFSTFSST-------------------------GVPRLRRILRALA 221 (940)
Q Consensus 180 -------------~~~~~~~qIekDl~RT~p~~~~F~~~~~~-------------------------~~~~L~rIL~Aya 221 (940)
.+.+...||++|+.||.|+..+|+..... ......|||..||
T Consensus 103 ls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyA 182 (370)
T KOG4567|consen 103 LSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYA 182 (370)
T ss_pred CCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHh
Confidence 12378899999999999999998754321 1234579999999
Q ss_pred eecCCCc---cc--ceecccCCccceehhhhHHHhhhhhhhhhhccCcccc----ccccc--CCcc-------cccchhh
Q psy11360 222 WLFPDIG---GV--VNALDFGSRGWWFESKRKVKRQKSILQNLIFGEEENG----EDIKT--KNIH-------QTGIQAD 283 (940)
Q Consensus 222 ~~np~iG---gm--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~Ee~A----~~ll~--~~y~-------~~gi~~~ 283 (940)
..||.|| || |.|.+| |||+.+-+.+-.-. .|+|| ..+|. ++.| .-|++..
T Consensus 183 KLNpGi~YVQGMNEIlaPiY----YVfa~Dpd~e~~~~--------aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~ 250 (370)
T KOG4567|consen 183 KLNPGIGYVQGMNEILAPIY----YVFANDPDEENRAY--------AEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFL 250 (370)
T ss_pred hcCCcchHHhhhHHHhhhhh----eeeccCCchhhHHh--------hhhhHHHHHHHHHHHHHHHHHHhccccccchHHH
Confidence 9999999 88 444423 34443332222211 24444 23332 1222 5678888
Q ss_pred HHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHH--HHHhhH-------HHHh
Q psy11360 284 QKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIV--LFHSCE-------PVLV 354 (940)
Q Consensus 284 ~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~v--lfk~~~-------~~Ll 354 (940)
+..|..+|++++-+||.||++.+|.++.|+++|+.+|++.+||++.++||||.+|.+.... |..+|- +.|+
T Consensus 251 Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il 330 (370)
T KOG4567|consen 251 MSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERIL 330 (370)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999987654 334443 3444
Q ss_pred cCCCHHHHHHHhhCCCCCCccchhhhhhhHHHhhhccCCCCCCCCHHHHHHHHHhcc
Q psy11360 355 TLENSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGDIVDIDNLLEVSFSVS 411 (940)
Q Consensus 355 ~~~d~~ei~~~L~~lp~~~~d~~~~~~~~~~~~~~~~~~p~~~~d~d~Li~~A~~~~ 411 (940)
+ .||..-+..||+.|. +|+..++..|-++.
T Consensus 331 ~-~DF~~nmkLLQ~yp~--------------------------tdi~~~l~~A~~Lr 360 (370)
T KOG4567|consen 331 E-GDFTVNMKLLQNYPT--------------------------TDISKMLAVADSLR 360 (370)
T ss_pred h-cchHHHHHHHhcCCC--------------------------CCHHHHHHHHHHHH
Confidence 3 588999999998876 38999998888874
No 13
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.88 E-value=4.6e-23 Score=215.94 Aligned_cols=182 Identities=31% Similarity=0.467 Sum_probs=141.2
Q ss_pred CChhHHHHHHHhccHH-HH------hhCHHHHHHHHHhccCchhHHHHHHHHhhhhcCCCCccccCCCCCChhHHhhhhh
Q psy11360 146 HSLRPQLWLRLSGALE-KK------ALSKIKYQDIVKASSSDALAFAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILR 218 (940)
Q Consensus 146 ~~lR~~vW~~Llg~~~-~~------~~~~~~Y~~l~~~~~~~~~~~~~qIekDl~RT~p~~~~F~~~~~~~~~~L~rIL~ 218 (940)
+++|+.+|+.|+|... .. ......+............+..++|++|+.||++++..+.. +.++..|.|||.
T Consensus 1 ~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~~--~~~~~~l~~iL~ 78 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEPNYSNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFKN--EQNQKSLERILS 78 (214)
T ss_dssp -CCHHHHHHHHCTCSCHHHHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCSTT--HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHccchhhhhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhhh--cchHHHHHHHHH
Confidence 4789999999999842 11 00111122222333334456799999999999996655554 788999999999
Q ss_pred hheeecCCCc---cc--ceecccCCccceehhhhHHHhhhhhhhhh-hccCcccc----cccc---cCCcc---cccchh
Q psy11360 219 ALAWLFPDIG---GV--VNALDFGSRGWWFESKRKVKRQKSILQNL-IFGEEENG----EDIK---TKNIH---QTGIQA 282 (940)
Q Consensus 219 Aya~~np~iG---gm--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LL-l~~~Ee~A----~~ll---~~~y~---~~gi~~ 282 (940)
+|+.++|++| || ||++ ++ ++++|++| ..++ ...+| ..|++.
T Consensus 79 ~~~~~~~~~~Y~qG~~~i~~~-----------------------ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~ 135 (214)
T PF00566_consen 79 AYAKYNPDVGYCQGMNDIAAP-----------------------LLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQK 135 (214)
T ss_dssp HHHHHTTTTSS-TTHHHHHHH-----------------------HHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHH
T ss_pred Hhccccccccccchhhhhhhh-----------------------hhhhcccccchhccccchhcccccccccccccccch
Confidence 9999999999 87 8888 66 67778877 3333 23444 577999
Q ss_pred hHHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHH-HHHhhHHHH
Q psy11360 283 DQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIV-LFHSCEPVL 353 (940)
Q Consensus 283 ~~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~v-lfk~~~~~L 353 (940)
.+..++.++++++|+|++||++.|+++..|+++||+|+|++.+|++.++|||| ++++|.++ ++.++.+.|
T Consensus 136 ~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~~~lail 206 (214)
T PF00566_consen 136 ILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFFIALAIL 206 (214)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 88899977 776665543
No 14
>KOG2221|consensus
Probab=99.87 E-value=8.9e-24 Score=213.23 Aligned_cols=206 Identities=27% Similarity=0.384 Sum_probs=173.0
Q ss_pred CCCCCcccccCCCCccccccccCCCCccchhHHHHHHHHHHhcCCCCCCCCccccccccccccccCCChHHHHHHHhcCC
Q psy11360 65 FDEFGFRVEEEDGPEQNSNKLLSEPFIEDPQHRLQWVAYLEFNSSSANSPGKEESEALTWDNLGVISRTDKLRSMTRQGI 144 (940)
Q Consensus 65 ~D~~GF~~~~~~~~~~~~~~~~~~~~~e~~~~~~kW~~~l~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~kLk~lir~GI 144 (940)
.|+|||........- +.......+-..|..||..|+. +|.... ..+-++++-.|++||
T Consensus 47 pdr~gfi~~~q~a~~----~k~~~~~~~L~~ReskwL~mld-----------------nw~~~m-~kk~~~ir~rcrkgi 104 (267)
T KOG2221|consen 47 PDRFGFIEGEQGAQG----KKEPETRGELRYRESKWLHMLD-----------------NWHEEM-RKKQKKIRPRCRKGI 104 (267)
T ss_pred Ccccceeeccccccc----CCCcccHHHHHhhHHHHHHHHH-----------------HHHHHH-HhccccccchhhcCC
Confidence 499999876543211 1111222234567889999997 566543 445578899999999
Q ss_pred CCChhHHHHHHHhccHHHHhhCHHHHHHHHHhccCchhHHHHHHHHhhhhcCCCCccccCCCCCChhHHhhhhhhheeec
Q psy11360 145 PHSLRPQLWLRLSGALEKKALSKIKYQDIVKASSSDALAFAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILRALAWLF 224 (940)
Q Consensus 145 P~~lR~~vW~~Llg~~~~~~~~~~~Y~~l~~~~~~~~~~~~~qIekDl~RT~p~~~~F~~~~~~~~~~L~rIL~Aya~~n 224 (940)
|+++|++.|+.|+|+......++..|..+...... ....+.|.+|++|.||.|.+|-.....|++.|+|+|.||..|+
T Consensus 105 ppslr~Raw~ylsGa~~~~~~np~~~~~~~~~pG~--p~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~ 182 (267)
T KOG2221|consen 105 PPSLRGRAWRYLSGAPSPPPKNPVVFDELGPAPGD--PKTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYK 182 (267)
T ss_pred CcccchhHHHhhcCCCCCCCCCcchhhhccCCCCC--CcchhhhccccccCCCcccccccccccchHHHHHHHHHHHHhC
Confidence 99999999999999998888899999999877654 3688999999999999999999988999999999999999999
Q ss_pred CCCc-----ccceecccCCccceehhhhHHHhhhhhhhhhhccCcccc--------cccccCCcc--cccchhhHHHHHH
Q psy11360 225 PDIG-----GVVNALDFGSRGWWFESKRKVKRQKSILQNLIFGEEENG--------EDIKTKNIH--QTGIQADQKVLRS 289 (940)
Q Consensus 225 p~iG-----gmIaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~Ee~A--------~~ll~~~y~--~~gi~~~~~v~~~ 289 (940)
|+.| --|||+ +|++|++++| +.+++.+|. +..|+.|-.++..
T Consensus 183 pe~g~cq~qapiaa~-----------------------llmhmp~rdaf~~~vqicekylqgy~~sgleaiq~dg~il~~ 239 (267)
T KOG2221|consen 183 PEEGYCQAQAPIAAV-----------------------LLMHMPARDAFWCFVQICEKYLQGYYSSGLEAIQNDGGILEG 239 (267)
T ss_pred chhhhhhhhchHHHH-----------------------HHhcccHHHHHHHHHHHHHHHcccccccchhhhhcccHHHHH
Confidence 9999 349999 9999999999 566654444 7888999999999
Q ss_pred HHHhhchhHHHHHhhcCCcchhHHHHHH
Q psy11360 290 LVASGLPQLEVSLLQHDIELSLITLHWF 317 (940)
Q Consensus 290 Ll~~~~P~L~~hL~~~~i~~~l~~~~Wf 317 (940)
|+++..|..|.||..+++++.+|.+.||
T Consensus 240 Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 240 LLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 9999999999999999999999999998
No 15
>KOG1102|consensus
Probab=99.84 E-value=9.3e-21 Score=216.48 Aligned_cols=222 Identities=29% Similarity=0.465 Sum_probs=180.9
Q ss_pred cccccccCCChHHHHHHHhcCCCCChhHHHHHHHhccHHHHhh-C-HHHHHHHHHhccCchhHHHHHHHHhhhhcCCCCc
Q psy11360 123 TWDNLGVISRTDKLRSMTRQGIPHSLRPQLWLRLSGALEKKAL-S-KIKYQDIVKASSSDALAFAKQIEKDLLRTMPTNA 200 (940)
Q Consensus 123 ~W~~~~~~~~~~kLk~lir~GIP~~lR~~vW~~Llg~~~~~~~-~-~~~Y~~l~~~~~~~~~~~~~qIekDl~RT~p~~~ 200 (940)
.|.++. ..+..++...+..|||..+|+.+|..+++....... . ...|....... .....++| +|+.||||.+.
T Consensus 126 ~~~~~~-~~~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~-~d~~Rt~~~~~ 200 (397)
T KOG1102|consen 126 SWLKVI-LRRPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLFDSLDELYRLQLDEP---EPHESEII-RDLSRTFPAHL 200 (397)
T ss_pred Hhhhhc-cccHHHHHHHhhccccHHHHHHHHHHhcccHhhhhhhhHHHHHHHhhccC---CCchhHHH-hhccCcCcchh
Confidence 455543 567899999999999999999999999997322221 1 12222222221 12244566 99999999999
Q ss_pred cccCCCCCChhHHhhhhhhheeecCCCc---cc--ceecccCCccceehhhhHHHhhhhhhhhhhccCcccc----cccc
Q psy11360 201 CFSTFSSTGVPRLRRILRALAWLFPDIG---GV--VNALDFGSRGWWFESKRKVKRQKSILQNLIFGEEENG----EDIK 271 (940)
Q Consensus 201 ~F~~~~~~~~~~L~rIL~Aya~~np~iG---gm--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~Ee~A----~~ll 271 (940)
.|+...+.++.+|.+||.||+.|+|++| || +|+. ++++++||+| ..+|
T Consensus 201 ~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~-----------------------ll~~~~ee~af~~lv~l~ 257 (397)
T KOG1102|consen 201 LFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAP-----------------------LLLYLPEEEAFPLLVKLM 257 (397)
T ss_pred hhhhhcCcccccccccchhhcccCCCcccccchhhHhhh-----------------------hhccCchhhhhhhhhhhh
Confidence 9999899999999999999999999999 77 8899 9999999999 3333
Q ss_pred cCC---c-c--cccchhhHHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHHH
Q psy11360 272 TKN---I-H--QTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVL 345 (940)
Q Consensus 272 ~~~---y-~--~~gi~~~~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~vl 345 (940)
..+ . - +.|++.....++.+++.+.|+++.|+...++...+|+.+||+|+|+..+|++.++||||+++.+|..++
T Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i~ 337 (397)
T KOG1102|consen 258 KNYGLDLLSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSIL 337 (397)
T ss_pred hccchhcccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHHH
Confidence 322 1 2 888899999999999999999999999999999999999999999999999999999999999997777
Q ss_pred H-------HhhHHHHhcCCCHHHHHHHhhCCCCCC
Q psy11360 346 F-------HSCEPVLVTLENSAEIFNALSDIPGDI 373 (940)
Q Consensus 346 f-------k~~~~~Ll~~~d~~ei~~~L~~lp~~~ 373 (940)
+ +.+.+.+++.. ++.++.++++.+..-
T Consensus 338 ~~~~~~l~~~~~~~~~~~~-~e~~~~~l~~~~~~~ 371 (397)
T KOG1102|consen 338 FRFSLALLKHKADDLLDLD-FESLLSYLRVDLPKS 371 (397)
T ss_pred HHHHHHHhhhhhHHHhhcc-HHHHHHHHhcccHhh
Confidence 6 66777777765 899999998755433
No 16
>KOG2224|consensus
Probab=99.76 E-value=1e-17 Score=182.17 Aligned_cols=277 Identities=17% Similarity=0.241 Sum_probs=192.6
Q ss_pred CCChHHHHHHHh-cCCCCChhHHHHHHHhccHH----------HHhhCHHHHHHHHHhccCc-h----hHHHH----HHH
Q psy11360 130 ISRTDKLRSMTR-QGIPHSLRPQLWLRLSGALE----------KKALSKIKYQDIVKASSSD-A----LAFAK----QIE 189 (940)
Q Consensus 130 ~~~~~kLk~lir-~GIP~~lR~~vW~~Llg~~~----------~~~~~~~~Y~~l~~~~~~~-~----~~~~~----qIe 189 (940)
....-+|++.+. +||-.++|+.||+.|+..+. .+......|.++-++..-. . -...+ .++
T Consensus 421 iedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~~fwknvq~tvd 500 (781)
T KOG2224|consen 421 IEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHIAFWKNVQFTVD 500 (781)
T ss_pred chhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhheEEEEe
Confidence 444567888886 89999999999999998652 2223445677775443211 0 01111 248
Q ss_pred HhhhhcCCCCccccCCCCCChhHHhhhhhhheeecCCCc---cc---ceecc---cCCccceehhhhHHHhhhhhh--hh
Q psy11360 190 KDLLRTMPTNACFSTFSSTGVPRLRRILRALAWLFPDIG---GV---VNALD---FGSRGWWFESKRKVKRQKSIL--QN 258 (940)
Q Consensus 190 kDl~RT~p~~~~F~~~~~~~~~~L~rIL~Aya~~np~iG---gm---Iaa~~---~~~~~~~~~~~~~~~~~~~~~--~L 258 (940)
|||.||.++|++|...+.++...++|||..||+|||.+| || +|.+. ...+....++--..++|.-++ +|
T Consensus 501 kdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapil 580 (781)
T KOG2224|consen 501 KDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPIL 580 (781)
T ss_pred cceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHH
Confidence 999999999999999999999999999999999999999 88 45440 011111122222223332222 23
Q ss_pred hhccCcccc----cccccCCcc-----cccchhhHHHHHHHHHhhchhHHHHHhhcCCc--chhHHHHHHHHhhccccch
Q psy11360 259 LIFGEEENG----EDIKTKNIH-----QTGIQADQKVLRSLVASGLPQLEVSLLQHDIE--LSLITLHWFLTLFASVVHF 327 (940)
Q Consensus 259 Ll~~~Ee~A----~~ll~~~y~-----~~gi~~~~~v~~~Ll~~~~P~L~~hL~~~~i~--~~l~~~~WfltLF~~~lp~ 327 (940)
--+++|.+. ..+|.+.|| -..+...+-.++.|++...|..|+||+++|-+ -.+|+-+|++.+|.++||-
T Consensus 581 aevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~e 660 (781)
T KOG2224|consen 581 AEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPE 660 (781)
T ss_pred HhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccH
Confidence 334566666 456666666 33455566779999999999999999999854 3689999999999999999
Q ss_pred hhHHHHHHHHHHhChHHHH---------HhhHHHHhc-CCCHHHHHHHhhCCCCCCccchhhhhhhHHHhhhccCCCCCC
Q psy11360 328 KILLRIWDLLFLDGSIVLF---------HSCEPVLVT-LENSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGDI 397 (940)
Q Consensus 328 ~~vlRIWD~fl~eG~~vlf---------k~~~~~Ll~-~~d~~ei~~~L~~lp~~~~d~~~~~~~~~~~~~~~~~~p~~~ 397 (940)
..++|||...+..--.-.| .++.+..+. ---.++++-.+.++...|. -+-++..++.+....+.+|+-.
T Consensus 661 a~airiweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~md-gelilrkar~ll~qfr~lpkip 739 (781)
T KOG2224|consen 661 AEAIRIWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMD-GELILRKARGLLHQFRLLPKIP 739 (781)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcC-chhhHHHHHHHHHHHhhcCCCC
Confidence 9999999999876543333 233333332 2246788888888888875 5667777777777777777766
Q ss_pred CCHHHHHHHH
Q psy11360 398 VDIDNLLEVS 407 (940)
Q Consensus 398 ~d~d~Li~~A 407 (940)
.....|.+.+
T Consensus 740 csl~~lck~c 749 (781)
T KOG2224|consen 740 CSLHDLCKLC 749 (781)
T ss_pred ccHHHHHHhc
Confidence 6777666654
No 17
>KOG1093|consensus
Probab=99.75 E-value=4.8e-18 Score=191.50 Aligned_cols=206 Identities=25% Similarity=0.325 Sum_probs=164.2
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHhccHHHHhhCHHHHHHHHHhccCchhHHHHHHHHhhhhcCCCCccccCCCCCChhHH
Q psy11360 134 DKLRSMTRQGIPHSLRPQLWLRLSGALEKKALSKIKYQDIVKASSSDALAFAKQIEKDLLRTMPTNACFSTFSSTGVPRL 213 (940)
Q Consensus 134 ~kLk~lir~GIP~~lR~~vW~~Llg~~~~~~~~~~~Y~~l~~~~~~~~~~~~~qIekDl~RT~p~~~~F~~~~~~~~~~L 213 (940)
..+-+..+.|+|+-+|+.+|..|++..... ...|..+-+- . ......|||.|++|.+......+. ..|+..|
T Consensus 346 ~qI~r~a~vdvpp~~R~~iW~aLL~l~e~~---~a~y~~IDk~-T--s~~tdrqievdiprchQyd~~lsS--p~~~r~l 417 (725)
T KOG1093|consen 346 LQILREAYVDVPPLYRGFIWAALLQLEENH---TAFYTLIDKG-T--SHSTDRQIEVDIPRCHQYDELLSS--PKGHRKL 417 (725)
T ss_pred HHHHHHhccCCChhHhHHHHHHHhcCcccc---chhhhhhhcC-C--CCcchhhhhcccchhhhcccccCC--HHHHHHH
Confidence 344445568999999999999999876443 3346555332 2 225789999999999998887775 7899999
Q ss_pred hhhhhhheeecCCCc---cc--ceecccCCccceehhhhHHHhhhhhhhhhhccCccc-c----cccccCC---cc----
Q psy11360 214 RRILRALAWLFPDIG---GV--VNALDFGSRGWWFESKRKVKRQKSILQNLIFGEEEN-G----EDIKTKN---IH---- 276 (940)
Q Consensus 214 ~rIL~Aya~~np~iG---gm--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~Ee~-A----~~ll~~~---y~---- 276 (940)
+|+|+||+.-.|..- |. +|+. | ++++++.|. | ..+.+++ ||
T Consensus 418 rRvLkawv~~s~~fvywqgldsLa~P-F---------------------l~ln~Nne~laF~~~~~fi~kycq~fflkdn 475 (725)
T KOG1093|consen 418 RRVLKAWVTWSPIFVYWQGLDSLAAP-F---------------------LYLNFNNELLAFACIATFIPKYCQHFFLKDN 475 (725)
T ss_pred HHHHHHHHhcCcceeecCCChhhhhh-H---------------------HHHhcCchHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999877 55 6665 3 777776555 4 3444432 33
Q ss_pred cccchhhHHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHHHH-------Hhh
Q psy11360 277 QTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLF-------HSC 349 (940)
Q Consensus 277 ~~gi~~~~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~vlf-------k~~ 349 (940)
..-++..+.+|.++++.++|.|++||.++|+.+++|+..||+|+|+.+||.+-.+.+||-.|..++.+.+ ...
T Consensus 476 s~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SFplmi~vAil~~l 555 (725)
T KOG1093|consen 476 SNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLMIGVAILIQL 555 (725)
T ss_pred chhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 4557788999999999999999999999999999999999999999999999999999999999998866 334
Q ss_pred HHHHhcCCCHHHHHHHhhCCC
Q psy11360 350 EPVLVTLENSAEIFNALSDIP 370 (940)
Q Consensus 350 ~~~Ll~~~d~~ei~~~L~~lp 370 (940)
++.||.+ ++.|.+.++.+.|
T Consensus 556 R~~LLa~-nfne~illf~d~p 575 (725)
T KOG1093|consen 556 RDPLLAC-NFNECILLFSDLP 575 (725)
T ss_pred hhhhhhC-CchhheeeeccCC
Confidence 5556654 6888888888888
No 18
>PF02759 RUN: RUN domain; InterPro: IPR004012 This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could therefore play important roles in multiple Ras-like GTPase signalling pathways.; PDB: 3CWZ_B 2CXF_A 2DWK_A 2DWG_A 2CXL_A.
Probab=99.73 E-value=2.3e-18 Score=167.91 Aligned_cols=127 Identities=39% Similarity=0.614 Sum_probs=93.5
Q ss_pred cchhhhHHHHhcCccccC-----CCCccccchhhhhhhhhccccchhhhhhhhhhhccccccCCCCcCChhHHHHHHHHH
Q psy11360 619 TLCPALKQILSCGLKRRA-----LGEVCHPWLFIEEVATREVEKDFTSVYSRLLLCKTYRLDEDGKVLTPEELLYRCVQA 693 (940)
Q Consensus 619 ~L~pAl~~ll~hGl~~~~-----~~~~~h~W~~ie~~~~~~~~~~~~s~~~r~~l~~sf~ld~~g~~~t~~~~l~~~i~~ 693 (940)
.||.++.+++.||++++. .....+.|+++++. .+ ..+..+.++++|+.
T Consensus 1 ~Lc~~le~il~hGlk~~~~~~~~~~~~~~~w~~~~~~-------------~~--------------~~~~~~~~~~~v~~ 53 (133)
T PF02759_consen 1 SLCSALEAILSHGLKPSRSRARGFQRRSDYWDFIEKV-------------EK--------------LCPSARSLISAVQQ 53 (133)
T ss_dssp HHHHHHHHHHHTTB---SS---TT----TTHHHHHTH-------------HH--------------H-GGHHHHHHHHCT
T ss_pred ChHHHHHHHHHcCCchhhHHHhhccCCCchHHHHHHH-------------hc--------------cCcchHHHHHHHHH
Confidence 379999999999999832 34577999999982 11 13345778999999
Q ss_pred HhhccccccccccchhhHHHhhhhhhhhHHHHHHHHhcChhHHhhhccccccccCchHH-HHhhhcccccCcccccCCCc
Q psy11360 694 VNQSHDMAHVQMDVKFRSLICLGLNEQVLHLWLEVLCSCEPVVLKWYHPWSFISSPGWV-QVKCDLRVLSQFPFNLSPDW 772 (940)
Q Consensus 694 i~~~h~~~~~~~d~kf~afIc~~LN~~~L~~Wl~~l~~~~~~i~~~Y~p~sfl~~~~~~-~~l~~L~~Ls~~~F~L~~d~ 772 (940)
|...+...+.+.++|||||||.|||++.|+.|+..|.++++++.+||+|||||+++... .++..|++|+.++|+|++|+
T Consensus 54 i~~~~~~~~~~~~gk~ra~Ir~aLn~~~L~~~l~~l~~~~~~l~~~Y~~~A~l~~~~~~~~l~~~L~~L~~l~F~l~~~~ 133 (133)
T PF02759_consen 54 ISNIHTDIKLSSDGKFRAWIRLALNEKCLSSWLQLLLSDPKLLRKYYEPWAFLRDPELREQLLSLLSGLSALPFNLSLDA 133 (133)
T ss_dssp -TT--SH-----HHHHHHHHHHHHHCT-HHHHHHHHCTTHHHHCCCB-TTSCTTSHHHHHHHHHHHGGGGCS-BESS---
T ss_pred HhhcccchhhhHHHHHHHHHHHHHHHChHHHHHHHHHhcchHHcCccCCcceeeCcchHHHHHHHHhhhCceeEEecCCC
Confidence 99999887788899999999999999999999999999999999999999999999975 67777999999999999985
No 19
>KOG1091|consensus
Probab=99.63 E-value=1.6e-15 Score=171.67 Aligned_cols=197 Identities=24% Similarity=0.399 Sum_probs=144.6
Q ss_pred hHHHHHHHHhhhhcCCCC-ccccCCCCCChhHHhhhhhhheeecCCCc---cc---ceecccCCccceehhhhHH-----
Q psy11360 182 LAFAKQIEKDLLRTMPTN-ACFSTFSSTGVPRLRRILRALAWLFPDIG---GV---VNALDFGSRGWWFESKRKV----- 249 (940)
Q Consensus 182 ~~~~~qIekDl~RT~p~~-~~F~~~~~~~~~~L~rIL~Aya~~np~iG---gm---Iaa~~~~~~~~~~~~~~~~----- 249 (940)
.+..+.|+.|+.||||.+ .+|+. ...+..|+|||..||.-||.+| || +|.+ .||++.+.+.
T Consensus 102 ~EL~~~i~qDvsRtfPe~~~fFqs--~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl-----~fVl~~D~q~l~h~s 174 (625)
T KOG1091|consen 102 AELEKTIDQDVSRTFPEHSLFFQS--PEVQGMLRRILLLYALEHPEIGYRQGMHELLAPL-----LFVLHVDNQALLHVS 174 (625)
T ss_pred HHHHHhhcchhhccCcchhhhhcC--chhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhh-----hhheehhHHHHHHHH
Confidence 378899999999999999 66665 6779999999999999999999 99 6776 4454444221
Q ss_pred ---------Hhhhhhhhhh---------------h----ccCcccc-----cccccCCcc------cccch---hhHHHH
Q psy11360 250 ---------KRQKSILQNL---------------I----FGEEENG-----EDIKTKNIH------QTGIQ---ADQKVL 287 (940)
Q Consensus 250 ---------~~~~~~~~LL---------------l----~~~Ee~A-----~~ll~~~y~------~~gi~---~~~~v~ 287 (940)
.++.++...+ + ++.|++- +.+|+..=| +.|+. .....+
T Consensus 175 e~~~~~l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~ 254 (625)
T KOG1091|consen 175 ESLFDKLGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQ 254 (625)
T ss_pred HhhhhhcCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhh
Confidence 1111111100 0 0111111 556654433 55543 344567
Q ss_pred HHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHH-HHHHhChHHHH---------HhhHHHHhcCC
Q psy11360 288 RSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWD-LLFLDGSIVLF---------HSCEPVLVTLE 357 (940)
Q Consensus 288 ~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD-~fl~eG~~vlf---------k~~~~~Ll~~~ 357 (940)
..++++.++.|+.||.+.||++++|..+|...||.++||+..+|-+|| +.+++++...+ -.-.+.|+..+
T Consensus 255 ~~lL~~~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss~ 334 (625)
T KOG1091|consen 255 YHLLAKVDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSSE 334 (625)
T ss_pred hhhhhhccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999 88999886655 23456667665
Q ss_pred CHHHHHHHhhCCCCCCccchhhhhhhHHHhhhccCCCCCCCCHHHHHHHHHhcc
Q psy11360 358 NSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGDIVDIDNLLEVSFSVS 411 (940)
Q Consensus 358 d~~ei~~~L~~lp~~~~d~~~~~~~~~~~~~~~~~~p~~~~d~d~Li~~A~~~~ 411 (940)
+.. ++++|-+.|... |++.+|+.|..+.
T Consensus 335 ~~t-cL~~Lm~yP~~~-------------------------Dv~~~iekAl~l~ 362 (625)
T KOG1091|consen 335 YQT-CLQYLMNYPEII-------------------------DVDKFIEKALHLQ 362 (625)
T ss_pred chh-HHHHHhcCCCcC-------------------------cHHHHHHHHHHHH
Confidence 545 788888887754 7888888887763
No 20
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=99.53 E-value=6.3e-15 Score=125.90 Aligned_cols=63 Identities=41% Similarity=0.654 Sum_probs=60.6
Q ss_pred hhHHHhhhhhhhhHHHHHHHHhcChhHHhhhccccccccC-chHHHHhhhcccccCcccccCCC
Q psy11360 709 FRSLICLGLNEQVLHLWLEVLCSCEPVVLKWYHPWSFISS-PGWVQVKCDLRVLSQFPFNLSPD 771 (940)
Q Consensus 709 f~afIc~~LN~~~L~~Wl~~l~~~~~~i~~~Y~p~sfl~~-~~~~~~l~~L~~Ls~~~F~L~~d 771 (940)
||||||+|||+|+|+.|++.|+++.+++++||+||||+++ .++++++..|++|+.++|+||+|
T Consensus 1 ~ra~ir~aLne~~L~~~l~~l~~~~~~~~~~Y~~~A~l~~~~~~~~l~~~L~~L~~~~F~l~~~ 64 (64)
T smart00593 1 FRAWIRLALNEKLLSSWLNLLLSDEELLSKYYEPWAFLRDPEEGEQLLGLLVGLSALDFNLPVD 64 (64)
T ss_pred CcHHHHHHHHHhHHHHHHHHHHhChHHHHHhCCCCceeeChhHHHHHHHHHhCccccceecCCC
Confidence 7999999999999999999999999999999999999999 47899999999999999999987
No 21
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=99.50 E-value=7.5e-15 Score=125.46 Aligned_cols=63 Identities=41% Similarity=0.654 Sum_probs=61.4
Q ss_pred hhhhhhhhcccchhHHHHHHHhcChhhhhccccCcccccC-cchhhhhhhhccccCcccccCCC
Q psy11360 847 FRSLICLGLNEQVLHLWLEVLCSCEPVVLKWYHPWSFISS-PGWVQVKCDLRVLSQFPFNLSPD 909 (940)
Q Consensus 847 ~~~~~~~~ln~~~l~~w~~~~~~~~~~~~~~y~~ws~~~~-~g~~~~~~~l~~l~~~~f~l~~d 909 (940)
||||||+||||++|+.|++.|+++.+++.+||+||||+++ ++++++.+.|..|+.+.|+||+|
T Consensus 1 ~ra~ir~aLne~~L~~~l~~l~~~~~~~~~~Y~~~A~l~~~~~~~~l~~~L~~L~~~~F~l~~~ 64 (64)
T smart00593 1 FRAWIRLALNEKLLSSWLNLLLSDEELLSKYYEPWAFLRDPEEGEQLLGLLVGLSALDFNLPVD 64 (64)
T ss_pred CcHHHHHHHHHhHHHHHHHHHHhChHHHHHhCCCCceeeChhHHHHHHHHHhCccccceecCCC
Confidence 6999999999999999999999999999999999999999 79999999999999999999987
No 22
>PF02759 RUN: RUN domain; InterPro: IPR004012 This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could therefore play important roles in multiple Ras-like GTPase signalling pathways.; PDB: 3CWZ_B 2CXF_A 2DWK_A 2DWG_A 2CXL_A.
Probab=99.39 E-value=1.1e-13 Score=134.99 Aligned_cols=95 Identities=37% Similarity=0.567 Sum_probs=76.1
Q ss_pred CCcCChhhHHHHHHHHHhhcccccccccccchhhhhhhhcccchhHHHHHHHhcChhhhhccccCcccccCcchh-hhhh
Q psy11360 816 GKVLTPEELLYRCVQAVNQSHDMAHVQMDVKFRSLICLGLNEQVLHLWLEVLCSCEPVVLKWYHPWSFISSPGWV-QVKC 894 (940)
Q Consensus 816 ~~~~t~~~~l~~~i~~~~~~h~~~~~~~d~~~~~~~~~~ln~~~l~~w~~~~~~~~~~~~~~y~~ws~~~~~g~~-~~~~ 894 (940)
+++.+..+.+.++|+.|...|+..+.+.+.++|||||+|||+++|+.|++.|+++..++.+||+||||++++... ++..
T Consensus 38 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~gk~ra~Ir~aLn~~~L~~~l~~l~~~~~~l~~~Y~~~A~l~~~~~~~~l~~ 117 (133)
T PF02759_consen 38 EKLCPSARSLISAVQQISNIHTDIKLSSDGKFRAWIRLALNEKCLSSWLQLLLSDPKLLRKYYEPWAFLRDPELREQLLS 117 (133)
T ss_dssp HHH-GGHHHHHHHHCT-TT--SH-----HHHHHHHHHHHHHCT-HHHHHHHHCTTHHHHCCCB-TTSCTTSHHHHHHHHH
T ss_pred hccCcchHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHChHHHHHHHHHhcchHHcCccCCcceeeCcchHHHHHH
Confidence 455677889999999999999999999999999999999999999999999999999999999999999999999 7888
Q ss_pred hhccccCcccccCCCC
Q psy11360 895 DLRVLSQFPFNLSPDW 910 (940)
Q Consensus 895 ~l~~l~~~~f~l~~d~ 910 (940)
.|..|+.+.|+|++|+
T Consensus 118 ~L~~L~~l~F~l~~~~ 133 (133)
T PF02759_consen 118 LLSGLSALPFNLSLDA 133 (133)
T ss_dssp HHGGGGCS-BESS---
T ss_pred HHhhhCceeEEecCCC
Confidence 9999999999999985
No 23
>KOG4436|consensus
Probab=99.37 E-value=2.8e-12 Score=149.91 Aligned_cols=296 Identities=22% Similarity=0.238 Sum_probs=203.2
Q ss_pred ccccCCCCCCcccC-CCCChHHHHHhhccCCCC-CCCCCCCCCCCCCcccccCCCCccccccc-cCCCCccchhHHH---
Q psy11360 25 NRITIPGGPFSALT-PSMWPQDIISKLNQVPED-PNSQPDYRFDEFGFRVEEEDGPEQNSNKL-LSEPFIEDPQHRL--- 98 (940)
Q Consensus 25 ~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~~~~~~~~~D~~GF~~~~~~~~~~~~~~~-~~~~~~e~~~~~~--- 98 (940)
|...--|.|-++.. ++.-.-++.++-+. ++- ...+...-.|+|||.-.+..++.+....- ......+.+.-+.
T Consensus 67 ~~t~l~~~~~~~~~~iSpD~kel~ak~e~-~~is~eSq~~~~~~~~g~~sr~~sg~s~~~~v~~v~~~~n~s~~DE~m~T 145 (948)
T KOG4436|consen 67 NRTMLFGAPESEAPLISPDTKELLAKKEF-KNISGESQSISHVSHFGFISRESSGNSQLEAVCYVFQCQNESLVDEDMWT 145 (948)
T ss_pred hhhccccCCccccCCCCccHHHHhhhhhh-hhccchhhhhhhhhhcCcccccCCCCCcccceeeeeccCCCcchhhhHHH
Confidence 44444555555544 33333467666555 221 22344566999999877665553211000 0001111122222
Q ss_pred HHHHHHHhcCC-CCCCCCccccccccccccccCCChHHHHHHHhcCCCCChhHHHHHHHhccHHHH-hhCHHHHHHHHHh
Q psy11360 99 QWVAYLEFNSS-SANSPGKEESEALTWDNLGVISRTDKLRSMTRQGIPHSLRPQLWLRLSGALEKK-ALSKIKYQDIVKA 176 (940)
Q Consensus 99 kW~~~l~~~~~-~~~~~~~~~~~~~~W~~~~~~~~~~kLk~lir~GIP~~lR~~vW~~Llg~~~~~-~~~~~~Y~~l~~~ 176 (940)
-|.++.-.... +++.+ ...|+.. +..+..+++.+|.+|||+..|-.+|..++.+.... ..-...|+++...
T Consensus 146 l~~a~s~~~~~~~~~~~------~~~~E~~-r~~s~~~l~e~Ve~~~p~~frli~~qlLssatd~~q~~I~e~~sdl~~~ 218 (948)
T KOG4436|consen 146 LWGAFSAAASQQHAKYA------MDLWERC-RKKSLHKLKELVEGGIPMHFRLIRWQLLSSATDREQALIFEDYSDLAPC 218 (948)
T ss_pred HHHHHhhhhhhhccccc------chhhhhh-hhhchhhhHHHHhcCCchHHHHHHHHHhcccccchhhHHHHHHHHHhhh
Confidence 35554321111 11111 1257665 36677899999999999999999999999886544 2234568887766
Q ss_pred ccCchh-HHHHHHHHhhhhcCCCCccccCCCCC-------ChhHHhhhhhhheeecCCCc-----ccceecccCCcccee
Q psy11360 177 SSSDAL-AFAKQIEKDLLRTMPTNACFSTFSST-------GVPRLRRILRALAWLFPDIG-----GVVNALDFGSRGWWF 243 (940)
Q Consensus 177 ~~~~~~-~~~~qIekDl~RT~p~~~~F~~~~~~-------~~~~L~rIL~Aya~~np~iG-----gmIaa~~~~~~~~~~ 243 (940)
.....+ .....|..|+.||.|.|.+|....+. +++.|+++.++|+..+-++| +++.++
T Consensus 219 s~~~Ek~~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gl--------- 289 (948)
T KOG4436|consen 219 SSQQEKELHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGL--------- 289 (948)
T ss_pred cchhhhhHHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHH---------
Confidence 544332 45568999999999999999986666 69999999999999999999 469999
Q ss_pred hhhhHHHhhhhhhhhhhccCcccc----ccccc----CCcc---cccchhhHHHHHHHHHhhch-hHHHHHhhcCCcchh
Q psy11360 244 ESKRKVKRQKSILQNLIFGEEENG----EDIKT----KNIH---QTGIQADQKVLRSLVASGLP-QLEVSLLQHDIELSL 311 (940)
Q Consensus 244 ~~~~~~~~~~~~~~LLl~~~Ee~A----~~ll~----~~y~---~~gi~~~~~v~~~Ll~~~~P-~L~~hL~~~~i~~~l 311 (940)
+++.|++|+| ..+|. +..+ |.-+-..+..++.......| .|+.|+.+.++..++
T Consensus 290 --------------l~l~~~~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~ 355 (948)
T KOG4436|consen 290 --------------LLLQMPVEEASSVKVQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSM 355 (948)
T ss_pred --------------HHhcCcHHHHHHHHHHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccH
Confidence 9999999998 22221 1122 33333444557788889999 999999999999999
Q ss_pred HHHHHHHHhhccccchhhHHHHHHHHHHhChHHHHHhhHH
Q psy11360 312 ITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLFHSCEP 351 (940)
Q Consensus 312 ~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~vlfk~~~~ 351 (940)
|.-.||++.|...||+...-|+.|+|.++|-...|+...+
T Consensus 356 ~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk~fr~~ia 395 (948)
T KOG4436|consen 356 YARSWFLTNFLTTFPIFMAARISDTFSSEGLLKRFRDSIA 395 (948)
T ss_pred HHHHHHHHhhcccCchhhccccccccccccHHHHHhhhHH
Confidence 9999999999999999999999999999999888844333
No 24
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.27 E-value=3.1e-12 Score=103.34 Aligned_cols=49 Identities=49% Similarity=0.925 Sum_probs=45.4
Q ss_pred EeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCccee
Q psy11360 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVE 591 (940)
Q Consensus 543 ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~ 591 (940)
|+|||.++.++||+|++||+|.|+.+.+++||.|+.+|++|+||+|||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 7999999999999999999999999989999999999999999999996
No 25
>KOG2595|consensus
Probab=99.25 E-value=4.4e-12 Score=136.63 Aligned_cols=233 Identities=18% Similarity=0.278 Sum_probs=156.1
Q ss_pred ChHHHHHHHh--cC-CCCChhHHHHHHHhccHHHHhhCHHHHHHHHHhccCchhHHHHHHHHhhhhcCCCCcc---ccCC
Q psy11360 132 RTDKLRSMTR--QG-IPHSLRPQLWLRLSGALEKKALSKIKYQDIVKASSSDALAFAKQIEKDLLRTMPTNAC---FSTF 205 (940)
Q Consensus 132 ~~~kLk~lir--~G-IP~~lR~~vW~~Llg~~~~~~~~~~~Y~~l~~~~~~~~~~~~~qIekDl~RT~p~~~~---F~~~ 205 (940)
+-+.|+.+.- .| +-+++|+.+|..|+|...... .+..|....+.. ..+.|...|++|++..-+. +..+
T Consensus 47 dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~-~~~~~~~~~q~h-----kd~nQV~LDv~RSl~rfppg~p~~~R 120 (395)
T KOG2595|consen 47 DVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHL-DATSTLTPVQKH-----KDYNQVILDVERSLGRFPPGIPKELR 120 (395)
T ss_pred cHHHHHHhccCCCccccHHHHHHHHHHHhccccCCC-cccccCChhhhC-----cccceEEEehhhhhccCCCCCCHHHH
Confidence 4466666554 34 456899999999999642221 223333333332 4578999999999854431 1110
Q ss_pred CCCChhHHhhhhhhheeecCCCc---cc--ceecccCCccceehhhhHHHhhhhhhhhhhccCcccc----ccccc---C
Q psy11360 206 SSTGVPRLRRILRALAWLFPDIG---GV--VNALDFGSRGWWFESKRKVKRQKSILQNLIFGEEENG----EDIKT---K 273 (940)
Q Consensus 206 ~~~~~~~L~rIL~Aya~~np~iG---gm--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~Ee~A----~~ll~---~ 273 (940)
...|..|..++.-.-..||..- |+ ||.+ +|+.+.|++| |++-. +
T Consensus 121 -~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~t-----------------------fLLv~gE~~Al~l~E~L~~~~lr 176 (395)
T KOG2595|consen 121 -LQLQKQLTELILRVLRKYPTLNYYQGYHDIVVT-----------------------FLLVVGELEALSLMEELSTLHLR 176 (395)
T ss_pred -HHHHHHHHHHHHHHHHHCCCcchhcchhHHHHH-----------------------HHHhhhhHhhhHHHHHHHHHHHH
Confidence 1224444444433445778887 77 8888 9999999999 33321 1
Q ss_pred Ccc---cccchhhHHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhcccc-chhhHHHHHHHHHHhChHHHH---
Q psy11360 274 NIH---QTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVV-HFKILLRIWDLLFLDGSIVLF--- 346 (940)
Q Consensus 274 ~y~---~~gi~~~~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~l-p~~~vlRIWD~fl~eG~~vlf--- 346 (940)
+|. |.+....+.++.-+++...|+||+.|.+-++. .+|+..|.+|+|+..+ ++.+++|++|+|+.--+-.-.
T Consensus 177 dfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevg-tlFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~piyv~ 255 (395)
T KOG2595|consen 177 DFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVG-TLFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLPIYVY 255 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhccc-ceehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchhHHHH
Confidence 222 77788888899999999999999999998885 5799999999999987 699999999999987664322
Q ss_pred ----HhhHHHHhcCC-CHHHHHHHhhCCCCCCccchhhhhhhHHHhhhccCCCCCCCCHHHHHHHHHhccCCCCHHHHH
Q psy11360 347 ----HSCEPVLVTLE-NSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGDIVDIDNLLEVSFSVSTSISQSLID 420 (940)
Q Consensus 347 ----k~~~~~Ll~~~-d~~ei~~~L~~lp~~~~d~~~~~~~~~~~~~~~~~~p~~~~d~d~Li~~A~~~~~~is~~~i~ 420 (940)
-.++.+|+++. |+.-+-..|+.+|.++. .|.+++.+...+...+...+.
T Consensus 256 A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp-------------------------~d~lik~s~~~i~~~~~t~~~ 309 (395)
T KOG2595|consen 256 AAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLP-------------------------YDTLIKESVLLITRKPATLLA 309 (395)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhCccccC-------------------------HHHHHHHHHHHHhcCChhhhh
Confidence 33455555543 44455566666666653 777777776655444444443
No 26
>KOG2197|consensus
Probab=99.21 E-value=1.6e-11 Score=143.59 Aligned_cols=183 Identities=26% Similarity=0.305 Sum_probs=142.4
Q ss_pred hcCCCCChhHHHHHHHhccHHHHhhCH---------HHHHHHHHhccCch----------hHHHHHHHHhhhhcCCCCcc
Q psy11360 141 RQGIPHSLRPQLWLRLSGALEKKALSK---------IKYQDIVKASSSDA----------LAFAKQIEKDLLRTMPTNAC 201 (940)
Q Consensus 141 r~GIP~~lR~~vW~~Llg~~~~~~~~~---------~~Y~~l~~~~~~~~----------~~~~~qIekDl~RT~p~~~~ 201 (940)
+.|+-+.+|+.+|+.+.+......... ..|.....+..... ......|++|+.||.+.+.+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~ 254 (488)
T KOG2197|consen 175 SGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEF 254 (488)
T ss_pred ccccccchhhhhhhhhhcccCcccccccccccccccccHhhhhhhheeccccccccccchhhhhhhhhhhccccchhhhh
Confidence 467777999999999988653322221 13555544432211 13447799999999999999
Q ss_pred ccCCCCCChhHHhhhhhhheeecCCCc---cc--ceecccCCccceehhhhHHHhhhhhhhhhhcc-Ccccc----cccc
Q psy11360 202 FSTFSSTGVPRLRRILRALAWLFPDIG---GV--VNALDFGSRGWWFESKRKVKRQKSILQNLIFG-EEENG----EDIK 271 (940)
Q Consensus 202 F~~~~~~~~~~L~rIL~Aya~~np~iG---gm--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~-~Ee~A----~~ll 271 (940)
|.....++...|.+||.+|+++|+++| || +.+. ++..+ +|.+| ..+|
T Consensus 255 ~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllsp-----------------------i~~v~~de~~aFwcFv~fm 311 (488)
T KOG2197|consen 255 YEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSP-----------------------ILIVMEDEVEAFWCFVGFM 311 (488)
T ss_pred hhcccccCHHHHHHHHhhcccccCccccccCchhhcCc-----------------------ceeeecCchHHHHHHHHHH
Confidence 987544569999999999999999999 88 4444 44444 45555 3333
Q ss_pred ---cCCcc--cccchhhHHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHHHH
Q psy11360 272 ---TKNIH--QTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLF 346 (940)
Q Consensus 272 ---~~~y~--~~gi~~~~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~vlf 346 (940)
..+|. ..|++.+...+..+++..+|.|++||+..+..-..|+++|++..|-++|.++.++++|.+++..-...-|
T Consensus 312 ~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f 391 (488)
T KOG2197|consen 312 DRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHF 391 (488)
T ss_pred HHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchH
Confidence 34666 8899999999999999999999999999999999999999999999999999999999999987665544
No 27
>KOG1264|consensus
Probab=99.13 E-value=4.7e-12 Score=147.06 Aligned_cols=146 Identities=23% Similarity=0.422 Sum_probs=105.8
Q ss_pred HhhcCCcccccCCccCccc-cCCCCCCCCCCCCCCccccccc-------------------------------cccceEE
Q psy11360 495 TCQIGRHFLTTDPRLSHAS-LTPNYSPESHQSDHDAYADVSR-------------------------------SRQRRAK 542 (940)
Q Consensus 495 i~~~g~~f~~~~~~f~sl~-lv~~y~~~s~~~~~~~~~~~~~-------------------------------~~~~~a~ 542 (940)
|+++|++|+.....|.|+. ||++|..++.++.+....+..+ .+...|+
T Consensus 699 i~rdGr~fvl~t~~FesLv~lv~yY~k~~lyR~mkLr~PVnee~l~~~~~e~d~~a~~d~~r~pg~yme~n~~~~~vt~k 778 (1267)
T KOG1264|consen 699 INRDGRHFVLGTSAFESLVELVSYYEKHPLYRKMKLRYPVNEELLERYNTERDINALYDVSRMPGDYMEINPSMPQVTVK 778 (1267)
T ss_pred EccCceEEEeccHHHHHHHHHHHHHhcChhhhcccccCcCCHHHHHHhhhhcccccccccccCCCCccccCccccchhhh
Confidence 5679999998888999995 9999999988887665443321 1235789
Q ss_pred EeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCc-ccccCCcceeeecccccccccCCCCCccccccccccccch
Q psy11360 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL-KGWFPAKFVELLDERSKQYSLAGDDSVTETITDLVRGTLC 621 (940)
Q Consensus 543 ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~-~G~fP~nyV~~l~~~~~~~~~~gd~s~se~it~lVRg~L~ 621 (940)
|||||.+..++||+|.+|-+|+++++...|||.|..+|+ .||||+|||+++.......... ..+.....|.+|
T Consensus 779 AL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~~~~~~e~------~~lne~plGtl~ 852 (1267)
T KOG1264|consen 779 ALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTADFEELEK------QILNENPLGTLC 852 (1267)
T ss_pred hhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccccccchhh------hhhcccccchhh
Confidence 999999999999999999999999999999999999875 5999999999987643221110 112222445555
Q ss_pred hhhHHHHhcCccccCCCCccccchh
Q psy11360 622 PALKQILSCGLKRRALGEVCHPWLF 646 (940)
Q Consensus 622 pAl~~ll~hGl~~~~~~~~~h~W~~ 646 (940)
..+.++-..|......|.+....-|
T Consensus 853 rgi~d~~~~nvv~~~q~~n~~~~vf 877 (1267)
T KOG1264|consen 853 RGILDLNTYNVVKAPQGKNQKSFVF 877 (1267)
T ss_pred hccccccccceeecccccCCcceEE
Confidence 5555555566665555554333333
No 28
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.09 E-value=8.6e-11 Score=97.30 Aligned_cols=54 Identities=43% Similarity=0.941 Sum_probs=48.7
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEE-eecCCCceEEEeCCcccccCCcceeee
Q psy11360 540 RAKALLDFERHDDDELGFRKNDVITII-SQKDEHCWIGELNGLKGWFPAKFVELL 593 (940)
Q Consensus 540 ~a~ALydf~~~~~~ELsf~kGdiI~Vl-~~~d~~WW~G~~~g~~G~fP~nyV~~l 593 (940)
+++|++||.+..+++|+|++||+|.|+ ++.+++||.|+.+|+.||||++||+++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 478999999999999999999999999 888889999999999999999999863
No 29
>KOG2070|consensus
Probab=99.03 E-value=1.7e-10 Score=128.62 Aligned_cols=60 Identities=35% Similarity=0.732 Sum_probs=55.9
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeeccccc
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSK 598 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~~~~~ 598 (940)
..++|-|.|.+.+.+||+|.|||+|+|.+..+.|||+|+.+|++||||+|||.++....+
T Consensus 18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~e~p 77 (661)
T KOG2070|consen 18 LVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKSEKP 77 (661)
T ss_pred eEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhhcCC
Confidence 468999999999999999999999999999999999999999999999999999875443
No 30
>KOG2199|consensus
Probab=99.03 E-value=7.9e-11 Score=128.88 Aligned_cols=59 Identities=37% Similarity=0.669 Sum_probs=55.1
Q ss_pred cccceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeec
Q psy11360 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594 (940)
Q Consensus 536 ~~~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~ 594 (940)
...++++|||||++.+++||+|++||||+|++..+++||+|++.+..|+||+|||+..-
T Consensus 213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred ccchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence 34568999999999999999999999999999999999999999999999999998754
No 31
>KOG3601|consensus
Probab=98.96 E-value=3.4e-10 Score=115.31 Aligned_cols=113 Identities=22% Similarity=0.381 Sum_probs=95.1
Q ss_pred hcccCCCCCchhHhhHHHHhhcCCcccccCCccCccc-cCCCCCCCCCCCCCCccccccc---------cccceEEEeec
Q psy11360 477 ARQATPARPQILVDLREATCQIGRHFLTTDPRLSHAS-LTPNYSPESHQSDHDAYADVSR---------SRQRRAKALLD 546 (940)
Q Consensus 477 ~k~k~~~~~E~~~dl~e~i~~~g~~f~~~~~~f~sl~-lv~~y~~~s~~~~~~~~~~~~~---------~~~~~a~ALyd 546 (940)
.+.++-+.+.....+|++ -|+||.+ .++|.|+| +++||..++.++...++++... ....++.|+||
T Consensus 96 gsvr~~d~vqhfkvvrpa---~~k~~lw-~skfnslnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~d 171 (222)
T KOG3601|consen 96 GSVRFPDGVQHFKVVRPA---FGKYFLW-SSKFNSLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYD 171 (222)
T ss_pred ccccCCCCceeccccccC---ccccccc-hhhccCCCCCcccCcccccccceeeeecccccccccCCCCccchhhhhcCC
Confidence 334444555556666777 8899985 57899996 9999999999998888776654 34567899999
Q ss_pred CCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeee
Q psy11360 547 FERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593 (940)
Q Consensus 547 f~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l 593 (940)
|.++.+.++.|+.||+|.|+...++.||.|+..|+.|+||++||...
T Consensus 172 f~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 172 FQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred CCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence 99999999999999999999999999999999999999999999754
No 32
>KOG1118|consensus
Probab=98.93 E-value=6.9e-10 Score=118.01 Aligned_cols=58 Identities=41% Similarity=0.709 Sum_probs=55.2
Q ss_pred cceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeecc
Q psy11360 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDE 595 (940)
Q Consensus 538 ~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~~ 595 (940)
.+.|+|+|||+++.++||.|+.||+|+|+.+.|++||.|+..|.+|+||.|||+++.+
T Consensus 306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvp 363 (366)
T KOG1118|consen 306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVP 363 (366)
T ss_pred chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEecc
Confidence 4679999999999999999999999999999999999999999999999999998764
No 33
>KOG2996|consensus
Probab=98.91 E-value=2.2e-10 Score=129.66 Aligned_cols=97 Identities=29% Similarity=0.449 Sum_probs=73.4
Q ss_pred hcCCcccccCCccCcc-ccCCCCCCCCCCCC-----CCcccccc-------------------ccccceEEEeecCCCCC
Q psy11360 497 QIGRHFLTTDPRLSHA-SLTPNYSPESHQSD-----HDAYADVS-------------------RSRQRRAKALLDFERHD 551 (940)
Q Consensus 497 ~~g~~f~~~~~~f~sl-~lv~~y~~~s~~~~-----~~~~~~~~-------------------~~~~~~a~ALydf~~~~ 551 (940)
..|.+++..+..|.|+ +||++|..++.... .....+.. +.....|+|-|||.+.+
T Consensus 739 ~dg~~~i~E~k~F~sl~ELVeyYq~~sLke~Fk~LDTtLk~Pyke~e~sa~~~~~~~~~sv~s~~~~g~AvarYdf~ard 818 (865)
T KOG2996|consen 739 NDGKVHITEDKKFNSLVELVEYYQSHSLKEIFKALDTTLKFPYKEPEHSAGQRGNRAGNSVLSPKVVGTAVARYDFCARD 818 (865)
T ss_pred cCCeEEechhhhhhhHHHHHHHHHhccHHHHHHHhhhhhcCCCcChhhhhhhccccccccccCcceeeeeeeccccCCCc
Confidence 3788888777888888 58888877664221 00000000 11223689999999999
Q ss_pred CCCccccCCCEEEEEeec--CCCceEEEeCCcccccCCcceeee
Q psy11360 552 DDELGFRKNDVITIISQK--DEHCWIGELNGLKGWFPAKFVELL 593 (940)
Q Consensus 552 ~~ELsf~kGdiI~Vl~~~--d~~WW~G~~~g~~G~fP~nyV~~l 593 (940)
-.||||+.||+|.|+.+. |.|||+|+++|+.||||++||++-
T Consensus 819 ~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 819 MRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEED 862 (865)
T ss_pred hhhcccccCCEEEEehhccccCceecceecCccccccccccccc
Confidence 999999999999999865 579999999999999999999874
No 34
>KOG1029|consensus
Probab=98.89 E-value=8.3e-10 Score=128.27 Aligned_cols=56 Identities=36% Similarity=0.773 Sum_probs=53.0
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeec
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~ 594 (940)
..++|+|||+++.++||+|++||+|.|+.++++.||.|+.+|..|+||+|||....
T Consensus 1054 ~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred ceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCccccccccc
Confidence 46899999999999999999999999999999999999999999999999996654
No 35
>KOG3636|consensus
Probab=98.88 E-value=6e-09 Score=115.49 Aligned_cols=213 Identities=19% Similarity=0.278 Sum_probs=146.2
Q ss_pred CCCCChhHHHHHHHhccHHHHhhCHHHHHHHHHhccCchhHHHHHHHHhhhhcCCCCccccCCCCCChhHHhhhhhhhee
Q psy11360 143 GIPHSLRPQLWLRLSGALEKKALSKIKYQDIVKASSSDALAFAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILRALAW 222 (940)
Q Consensus 143 GIP~~lR~~vW~~Llg~~~~~~~~~~~Y~~l~~~~~~~~~~~~~qIekDl~RT~p~~~~F~~~~~~~~~~L~rIL~Aya~ 222 (940)
|=|.++ |++++|+..+.. .-..+..+..- +.-.+|.+|..|---....=.+..-+-...|..++.-|+.
T Consensus 36 G~~~~~----W~~~L~V~~K~d-~l~~wd~iydL------p~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK 104 (669)
T KOG3636|consen 36 GNDKSD----WMRLLGVSMKPN-PLDDWDQIYDL------PNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCK 104 (669)
T ss_pred CCCHHH----HHHHhcccCCCC-chhhHHHHhCC------chhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhh
Confidence 445554 999999864332 12345555433 2345677787664322221111112334467888888874
Q ss_pred -----ecCCCc--ccceecccCCccceehhhhHHHhhhhhhhhhhccCcccc----c----ccccCCcccccchhhHHHH
Q psy11360 223 -----LFPDIG--GVVNALDFGSRGWWFESKRKVKRQKSILQNLIFGEEENG----E----DIKTKNIHQTGIQADQKVL 287 (940)
Q Consensus 223 -----~np~iG--gmIaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~~Ee~A----~----~ll~~~y~~~gi~~~~~v~ 287 (940)
|-|++| -.+-.+ +++.++..+. + .++|++.-..|- -..+|
T Consensus 105 ~Rn~~Y~~d~gWi~lL~pl-----------------------~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~--~Fh~F 159 (669)
T KOG3636|consen 105 KRNMDYIKDIGWITLLEPL-----------------------LLLNLPRSDEFNVFFAITTKYIPKDCRPKGQ--IFHLF 159 (669)
T ss_pred ccCCcccccccHHHHHHHH-----------------------HHhcCCcchhhhhhHhhhhcccCCCCCCCCc--cchHH
Confidence 456666 445556 7777777666 2 222322223332 23569
Q ss_pred HHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHHHH-------H-hhHHHHhcCC--
Q psy11360 288 RSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLF-------H-SCEPVLVTLE-- 357 (940)
Q Consensus 288 ~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~vlf-------k-~~~~~Ll~~~-- 357 (940)
+-||.-++|+|..||+...|.|.+|+..||-+||+.....+.+.-+||.|+-.+..++. - -.+++||+++
T Consensus 160 RLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sd 239 (669)
T KOG3636|consen 160 RLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSD 239 (669)
T ss_pred HHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999986643 1 2466777765
Q ss_pred CHHHHHHHhhCCCCCCccchhhhhhhHHHhhhccCCCCCCCCHHHHHHHHHhccCC
Q psy11360 358 NSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGDIVDIDNLLEVSFSVSTS 413 (940)
Q Consensus 358 d~~ei~~~L~~lp~~~~d~~~~~~~~~~~~~~~~~~p~~~~d~d~Li~~A~~~~~~ 413 (940)
+-++++++|.++|..+. .+ |+..+...|.-...+
T Consensus 240 sKEe~ikfLenmp~~L~-~e---------------------DvpDffsLAqyY~~K 273 (669)
T KOG3636|consen 240 SKEEAIKFLENMPAQLS-VE---------------------DVPDFFSLAQYYSDK 273 (669)
T ss_pred cHHHHHHHHHcCchhcc-cc---------------------cchhHHHHHHHHhhc
Confidence 45899999999999876 22 788888888776433
No 36
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=98.78 E-value=4.7e-09 Score=84.40 Aligned_cols=46 Identities=39% Similarity=0.870 Sum_probs=42.0
Q ss_pred EEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeC--CcccccCC
Q psy11360 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELN--GLKGWFPA 587 (940)
Q Consensus 542 ~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~--g~~G~fP~ 587 (940)
+|+|||.++.++||+|++||.|.|+++.+.+||.|+.. |+.|+||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 68999999999999999999999999999999999964 79999996
No 37
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.77 E-value=1.1e-08 Score=84.02 Aligned_cols=54 Identities=41% Similarity=0.852 Sum_probs=50.4
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeC-CcccccCCcceee
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELN-GLKGWFPAKFVEL 592 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~-g~~G~fP~nyV~~ 592 (940)
..++|+|||.+..+++|+|++||+|.+++..+.+||.++.. |++||||++||+.
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 57 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE 57 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence 46899999999999999999999999999988999999976 9999999999975
No 38
>KOG0162|consensus
Probab=98.76 E-value=6.7e-09 Score=120.40 Aligned_cols=54 Identities=39% Similarity=0.775 Sum_probs=52.2
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceee
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~ 592 (940)
+.+.|+|||.+++.+||+|++||+|.|+.++..|||.|+.+|++||||.+||++
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence 579999999999999999999999999999999999999999999999999975
No 39
>KOG4226|consensus
Probab=98.71 E-value=1.7e-08 Score=105.74 Aligned_cols=57 Identities=26% Similarity=0.601 Sum_probs=53.0
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeeccc
Q psy11360 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDER 596 (940)
Q Consensus 540 ~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~~~ 596 (940)
.|..-|.|.++.++||++.||+.|.|+++..+|||+|+.+|+.||||+|||++..+.
T Consensus 109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds 165 (379)
T KOG4226|consen 109 PAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDS 165 (379)
T ss_pred ceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccc
Confidence 478889999999999999999999999999999999999999999999999876543
No 40
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.69 E-value=2.3e-08 Score=81.00 Aligned_cols=51 Identities=41% Similarity=0.897 Sum_probs=47.5
Q ss_pred EEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCC-cccccCCccee
Q psy11360 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNG-LKGWFPAKFVE 591 (940)
Q Consensus 541 a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g-~~G~fP~nyV~ 591 (940)
++|+|||.+..+++|+|.+||.+.+++..+.+||.++..+ ++||||++||+
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 6899999999999999999999999998888999999765 99999999986
No 41
>KOG4348|consensus
Probab=98.68 E-value=7.4e-09 Score=114.12 Aligned_cols=67 Identities=33% Similarity=0.604 Sum_probs=60.1
Q ss_pred cccceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeeccccccccc
Q psy11360 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQYSL 602 (940)
Q Consensus 536 ~~~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~~~~~~~~~ 602 (940)
...++|++.|.|.++.++||.|+.||+|.|++...+|||.|.++|..|+||+|||+.+...+.+...
T Consensus 98 ~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sde~~~ 164 (627)
T KOG4348|consen 98 PQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSDESAA 164 (627)
T ss_pred ccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCcchhh
Confidence 3457899999999999999999999999999999999999999999999999999998766654443
No 42
>KOG2801|consensus
Probab=98.63 E-value=8.5e-08 Score=101.45 Aligned_cols=256 Identities=22% Similarity=0.322 Sum_probs=159.2
Q ss_pred hHHHHHHHhcCC---CCChhHHHHHHHhccHHHHh--hCHHHHHHHHHhccCchhHHHHHHHHhhhhcCCCCccccCCCC
Q psy11360 133 TDKLRSMTRQGI---PHSLRPQLWLRLSGALEKKA--LSKIKYQDIVKASSSDALAFAKQIEKDLLRTMPTNACFSTFSS 207 (940)
Q Consensus 133 ~~kLk~lir~GI---P~~lR~~vW~~Llg~~~~~~--~~~~~Y~~l~~~~~~~~~~~~~qIekDl~RT~p~~~~F~~~~~ 207 (940)
-.+||++.|.|- .+.+|++|++.|+.-...+. .....|.+++.+.-+..+..--.+..=+..|--...+. +.
T Consensus 32 lqelkqlarqgywaqshalrgkvyqrlirdipcrtvtpdasvysdivgkivgkhsssclplpefvdntqvpsycl---na 108 (559)
T KOG2801|consen 32 LQELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLPEFVDNTQVPSYCL---NA 108 (559)
T ss_pred HHHHHHHHhcchHHhhhhhhhHHHHHHHhcCCccccCCchhHHHHHHHHHhccCCcccccchhhcccCcCchhhh---cC
Confidence 368899999885 67899999999876432221 22346888776543332211111111122222112222 35
Q ss_pred CChhHHhhhhhhheeecCCCc--c-c--ceecccCCccceehhhhHHHhhhhhhhhhhcc-Ccccc----cccc------
Q psy11360 208 TGVPRLRRILRALAWLFPDIG--G-V--VNALDFGSRGWWFESKRKVKRQKSILQNLIFG-EEENG----EDIK------ 271 (940)
Q Consensus 208 ~~~~~L~rIL~Aya~~np~iG--g-m--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~-~Ee~A----~~ll------ 271 (940)
.|....+.||.+.|...|+|. . . ++|+ ||.|. +|.+. .+++
T Consensus 109 rgegavrkilKOGanqfpdisfcpalpavval-----------------------llhysideaecfekacrilacndpg 165 (559)
T KOG2801|consen 109 RGEGAVRKILLCLANQFPDISFCPALPAVVAL-----------------------LLHYSIDEAECFEKACRILACNDPG 165 (559)
T ss_pred cCchhHHHHHHHHhccCCCcccCcchHHHHHH-----------------------HHHhcccHHHHHHHhheeeeecCcc
Confidence 778899999999999999999 2 2 4444 55553 33332 3333
Q ss_pred ----cCCcccccchhhHHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHHHHH
Q psy11360 272 ----TKNIHQTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLFH 347 (940)
Q Consensus 272 ----~~~y~~~gi~~~~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~vlfk 347 (940)
... ...+...+..|..|+.++.-.-++.+....-+.......|-..||.. +|+-.-.|++|+|+.||.+++|+
T Consensus 166 rrlidqs--flafesscmtfgdlvnkycqaahklmvavsedvlqvyadwqrwlfge-lplcyfarvfdvflvegykvlyr 242 (559)
T KOG2801|consen 166 RRLIDQS--FLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLFGE-LPLCYFARVFDVFLVEGYKVLYR 242 (559)
T ss_pred hhhhhhH--HHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcc-chHHHHHHHhhheeecchHHHHH
Confidence 222 33455667789999999999988888766666666777899888865 99999999999999999999997
Q ss_pred hhHHHHhcCCCHHHHHHHhhCCCCCCccchhhhhhhHHHhhhccCCCCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q psy11360 348 SCEPVLVTLENSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGDIVDIDNLLEVSFSVSTSISQSLIDSHRRRHL 427 (940)
Q Consensus 348 ~~~~~Ll~~~d~~ei~~~L~~lp~~~~d~~~~~~~~~~~~~~~~~~p~~~~d~d~Li~~A~~~~~~is~~~i~~~r~~~~ 427 (940)
+..+.|.- +...+. +..-..| .+...+-..+++|.+ .+.++.|+++||.+. -++.+.|.-++-..+
T Consensus 243 valailkf-------fhkvra--gqplesd---svkqdirtfvrdiak-tvspekllekafair-lfsrkeiqllqmane 308 (559)
T KOG2801|consen 243 VALAILKF-------FHKVRA--GQPLESD---SVKQDIRTFVRDIAK-TVSPEKLLEKAFAIR-LFSRKEIQLLQMANE 308 (559)
T ss_pred HHHHHHHH-------HHHhhc--CCCCccc---hHHHHHHHHHHHHHh-hCCHHHHHHHHHHHH-HhhHHHHHHHHHhhH
Confidence 76554421 111110 0000000 011112222223322 247999999999986 678888887777666
Q ss_pred HHHh
Q psy11360 428 AFLM 431 (940)
Q Consensus 428 ~~l~ 431 (940)
..++
T Consensus 309 kalk 312 (559)
T KOG2801|consen 309 KALK 312 (559)
T ss_pred HHHH
Confidence 5554
No 43
>KOG4225|consensus
Probab=98.62 E-value=3e-08 Score=110.25 Aligned_cols=60 Identities=43% Similarity=0.746 Sum_probs=56.0
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeeccccc
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSK 598 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~~~~~ 598 (940)
.-++|+|+|+++...||+|.+||+|.|+.+.|.+|+.|+.+|+.|+||+|||+.+.....
T Consensus 231 ~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~ 290 (489)
T KOG4225|consen 231 RAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREK 290 (489)
T ss_pred chhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccc
Confidence 348999999999999999999999999999999999999999999999999999877443
No 44
>KOG4792|consensus
Probab=98.54 E-value=3.4e-08 Score=101.18 Aligned_cols=93 Identities=22% Similarity=0.404 Sum_probs=69.8
Q ss_pred cCCccCccc-cCCCCCCCCCCCCCCcc----------ccccccccceEEEeecCCCCCCCCccccCCCEEEEEeecCCCc
Q psy11360 505 TDPRLSHAS-LTPNYSPESHQSDHDAY----------ADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHC 573 (940)
Q Consensus 505 ~~~~f~sl~-lv~~y~~~s~~~~~~~~----------~~~~~~~~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~W 573 (940)
.+.+|.+|. |.++|+.+-.....-.. +........+++|+|||.+.+.++|.|++|++++|+++..+.|
T Consensus 80 gdQ~Fd~lPaLL~fykihyLdtttLi~p~~r~~~~~~~~~~~~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqW 159 (293)
T KOG4792|consen 80 GDQEFDSLPALLEFYKIHYLDTTTLIEPAKRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQW 159 (293)
T ss_pred ccccccchHHHHhheeEeeeccccccccccccccccCcccchhhhhheeeeeccCCCccccCCcccCcEEEEecCcHHHh
Confidence 467788885 77777664432211100 0001122357889999999999999999999999999999999
Q ss_pred eEEE-eCCcccccCCcceeeecccc
Q psy11360 574 WIGE-LNGLKGWFPAKFVELLDERS 597 (940)
Q Consensus 574 W~G~-~~g~~G~fP~nyV~~l~~~~ 597 (940)
|.++ ..|++|++|.+||+......
T Consensus 160 W~Arns~Gk~GmIPvpYVe~~~~~~ 184 (293)
T KOG4792|consen 160 WNARNSEGKRGMIPVPYVEKYRPAS 184 (293)
T ss_pred hhhhccCCcccceechHHHhhhhhh
Confidence 9998 68999999999999876554
No 45
>KOG4348|consensus
Probab=98.44 E-value=1.9e-07 Score=103.28 Aligned_cols=57 Identities=39% Similarity=0.782 Sum_probs=52.9
Q ss_pred cceEEEeecCCCCCCCCccccCCCEEEEEeec--CCCceEEEeCCcccccCCcceeeec
Q psy11360 538 QRRAKALLDFERHDDDELGFRKNDVITIISQK--DEHCWIGELNGLKGWFPAKFVELLD 594 (940)
Q Consensus 538 ~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~--d~~WW~G~~~g~~G~fP~nyV~~l~ 594 (940)
..+|+.+|.|+++.++||.|+.||+|.++.+. +.|||+|+++|++|+||-|||+.+.
T Consensus 261 Keycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 261 KEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred hhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 35899999999999999999999999998765 6899999999999999999999876
No 46
>KOG4226|consensus
Probab=98.38 E-value=4.3e-07 Score=95.36 Aligned_cols=60 Identities=27% Similarity=0.551 Sum_probs=54.0
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeec--CCCceEEE-eCCcccccCCcceeeeccccc
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQK--DEHCWIGE-LNGLKGWFPAKFVELLDERSK 598 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~--d~~WW~G~-~~g~~G~fP~nyV~~l~~~~~ 598 (940)
..+.|||.|.+..++||+|+|||.+.|+++. |++||.++ .+|++|++|.|||+++.+...
T Consensus 192 ~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~ 254 (379)
T KOG4226|consen 192 HVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPS 254 (379)
T ss_pred EEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCcc
Confidence 4689999999999999999999999999864 78999998 689999999999999876553
No 47
>KOG2856|consensus
Probab=98.37 E-value=9.3e-08 Score=103.95 Aligned_cols=55 Identities=33% Similarity=0.657 Sum_probs=49.4
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecC-CCceEEEeC-CcccccCCcceeee
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKD-EHCWIGELN-GLKGWFPAKFVELL 593 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d-~~WW~G~~~-g~~G~fP~nyV~~l 593 (940)
..++|||||.++..+||+|++||.++.+...| .||..|+++ |+.|++|+|||+-+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 57999999999999999999999999987654 678889987 99999999999854
No 48
>KOG1029|consensus
Probab=98.15 E-value=1.4e-06 Score=102.26 Aligned_cols=59 Identities=32% Similarity=0.668 Sum_probs=52.7
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeec--CCCceEEEeCCcccccCCcceeeecccc
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQK--DEHCWIGELNGLKGWFPAKFVELLDERS 597 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~--d~~WW~G~~~g~~G~fP~nyV~~l~~~~ 597 (940)
.+++|||.|++.+.+|++|..||+|.|-... .+||..|+++|.+||||.|||+.+....
T Consensus 694 vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e 754 (1118)
T KOG1029|consen 694 VKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVE 754 (1118)
T ss_pred EEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCC
Confidence 5799999999999999999999999987543 6889999999999999999999886544
No 49
>KOG4225|consensus
Probab=98.07 E-value=2.2e-06 Score=95.70 Aligned_cols=53 Identities=28% Similarity=0.639 Sum_probs=50.3
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEE--EeCCcccccCCcceee
Q psy11360 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIG--ELNGLKGWFPAKFVEL 592 (940)
Q Consensus 540 ~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G--~~~g~~G~fP~nyV~~ 592 (940)
.++|||.|.++.++||.|+.||+|.|+++.|+||..| +..|.-|.||.|||+.
T Consensus 434 ~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 434 KYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred cceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence 4899999999999999999999999999999999999 5789999999999974
No 50
>KOG2546|consensus
Probab=98.01 E-value=2.3e-06 Score=95.24 Aligned_cols=55 Identities=29% Similarity=0.667 Sum_probs=52.6
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeec
Q psy11360 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594 (940)
Q Consensus 540 ~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~ 594 (940)
.++|+|||.+..++||+|..|-+|.|+.+.|+|||+|..+|.+|+||.|||+.+.
T Consensus 425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence 5889999999999999999999999999999999999999999999999998764
No 51
>KOG1843|consensus
Probab=98.00 E-value=4.6e-06 Score=92.42 Aligned_cols=55 Identities=40% Similarity=0.751 Sum_probs=50.8
Q ss_pred cceEEEeecCCCCCCCCccccCCCEEEEEeecC--CCceEEEeCCcccccCCcceee
Q psy11360 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKD--EHCWIGELNGLKGWFPAKFVEL 592 (940)
Q Consensus 538 ~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d--~~WW~G~~~g~~G~fP~nyV~~ 592 (940)
...+.|+|+|.++.+.+|+|++||+|+++.+.+ ..||.|+.+|.+|+||+|||+.
T Consensus 416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 347999999999999999999999999998875 6799999999999999999974
No 52
>KOG3655|consensus
Probab=97.99 E-value=2.3e-06 Score=96.85 Aligned_cols=56 Identities=45% Similarity=0.797 Sum_probs=52.4
Q ss_pred cceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEe-CCcccccCCcceeee
Q psy11360 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL-NGLKGWFPAKFVELL 593 (940)
Q Consensus 538 ~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~-~g~~G~fP~nyV~~l 593 (940)
...|+|+|||.+.++.|++|..+|+|++++..|+|||.|.. +|..|+||+|||+.+
T Consensus 427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 45799999999999999999999999999999999999995 899999999999865
No 53
>KOG0515|consensus
Probab=97.92 E-value=4.5e-06 Score=94.81 Aligned_cols=54 Identities=35% Similarity=0.684 Sum_probs=49.4
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEeecC---CCceEEEeCCcccccCCcceeee
Q psy11360 540 RAKALLDFERHDDDELGFRKNDVITIISQKD---EHCWIGELNGLKGWFPAKFVELL 593 (940)
Q Consensus 540 ~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d---~~WW~G~~~g~~G~fP~nyV~~l 593 (940)
.+.|+|||+++.++||+|+.||.++|+.++| .+||+++++|++|++|.||+-..
T Consensus 685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLy 741 (752)
T KOG0515|consen 685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLY 741 (752)
T ss_pred eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcC
Confidence 5889999999999999999999999998864 57999999999999999998654
No 54
>KOG3875|consensus
Probab=97.82 E-value=3.2e-06 Score=90.74 Aligned_cols=57 Identities=30% Similarity=0.573 Sum_probs=50.0
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecC-----CCceEEE-e-CCcccccCCcceeeecc
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKD-----EHCWIGE-L-NGLKGWFPAKFVELLDE 595 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d-----~~WW~G~-~-~g~~G~fP~nyV~~l~~ 595 (940)
..|+|+|||.+.++.|++|++||++.|..+++ ..||... . +|.+||||.|||+++..
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 46999999999999999999999999998764 5588866 4 56789999999999876
No 55
>KOG1702|consensus
Probab=97.74 E-value=2.3e-05 Score=79.48 Aligned_cols=57 Identities=26% Similarity=0.579 Sum_probs=51.6
Q ss_pred ccceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEe--CCcccccCCcceeee
Q psy11360 537 RQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVELL 593 (940)
Q Consensus 537 ~~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~--~g~~G~fP~nyV~~l 593 (940)
.+.+.+|.|||.+++.+|.+|.-||.|.-+...|+||..|++ +|.+|..|+||++.+
T Consensus 206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred CCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 346789999999999999999999999999999999999884 899999999999853
No 56
>KOG3523|consensus
Probab=97.28 E-value=5.7e-05 Score=87.71 Aligned_cols=60 Identities=23% Similarity=0.552 Sum_probs=54.8
Q ss_pred cceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEE--eCCcccccCCcceeeecccc
Q psy11360 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLDERS 597 (940)
Q Consensus 538 ~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~--~~g~~G~fP~nyV~~l~~~~ 597 (940)
..++.+...|.+..++||++..+|++.|+.+.++||..|+ .+|.+||||..||+.|.+..
T Consensus 608 cpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~~ 669 (695)
T KOG3523|consen 608 CPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNPH 669 (695)
T ss_pred CChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCHH
Confidence 3568889999999999999999999999999999999998 48999999999999987654
No 57
>KOG4278|consensus
Probab=97.05 E-value=0.00059 Score=79.83 Aligned_cols=63 Identities=21% Similarity=0.401 Sum_probs=52.1
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecC-CCceEEEe-CCcccccCCcceeeeccccccccc
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKD-EHCWIGEL-NGLKGWFPAKFVELLDERSKQYSL 602 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d-~~WW~G~~-~g~~G~fP~nyV~~l~~~~~~~~~ 602 (940)
...+|||||.+..++.|++.|||.+.|+.... ..|.+.+. ||+ ||+|+||+.++..-++..+.
T Consensus 91 NLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNSLeKhsWY 155 (1157)
T KOG4278|consen 91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNSLEKHSWY 155 (1157)
T ss_pred ceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccchhhcccc
Confidence 46899999999999999999999999998664 45666774 666 99999999998766665543
No 58
>KOG4773|consensus
Probab=96.89 E-value=0.00015 Score=79.32 Aligned_cols=60 Identities=32% Similarity=0.600 Sum_probs=55.9
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeeccccc
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSK 598 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~~~~~ 598 (940)
.++.|++||.+....||.|.+||++.++.+++.+||.|+..|.+||+|.+|++.++...+
T Consensus 176 q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe 235 (386)
T KOG4773|consen 176 QRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPE 235 (386)
T ss_pred HHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCcc
Confidence 468899999999999999999999999999999999999999999999999999866555
No 59
>KOG3632|consensus
Probab=96.69 E-value=0.0013 Score=80.07 Aligned_cols=60 Identities=28% Similarity=0.571 Sum_probs=50.0
Q ss_pred cceEEEeecCCCC--------CCCCccccCCCEEEEEee-cCCCceEEEeCCcccccCCcceeeecccc
Q psy11360 538 QRRAKALLDFERH--------DDDELGFRKNDVITIISQ-KDEHCWIGELNGLKGWFPAKFVELLDERS 597 (940)
Q Consensus 538 ~~~a~ALydf~~~--------~~~ELsf~kGdiI~Vl~~-~d~~WW~G~~~g~~G~fP~nyV~~l~~~~ 597 (940)
....+|+|||++. .+.||+|++|+||.|+.. +.+|++.|+++|++|+||.|+|.++.-..
T Consensus 1138 arifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~ 1206 (1335)
T KOG3632|consen 1138 ARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDN 1206 (1335)
T ss_pred ceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCc
Confidence 3568999999863 345899999999999964 45789999999999999999999875443
No 60
>KOG2528|consensus
Probab=96.46 E-value=0.0017 Score=73.46 Aligned_cols=57 Identities=32% Similarity=0.542 Sum_probs=51.0
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeec-CCCceEEE-eCCcccccCCcceeeecc
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQK-DEHCWIGE-LNGLKGWFPAKFVELLDE 595 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~-d~~WW~G~-~~g~~G~fP~nyV~~l~~ 595 (940)
..++|+|||..+..+|++...||++.++... .+|||.|. ..|.+|.||+.||+++..
T Consensus 3 sk~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~ 61 (490)
T KOG2528|consen 3 SKARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRL 61 (490)
T ss_pred cchhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeecc
Confidence 3589999999999999999999999998765 57899998 689999999999998763
No 61
>KOG4792|consensus
Probab=96.45 E-value=0.0059 Score=63.52 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=50.5
Q ss_pred cceEEEeecCCC--CCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeecccc
Q psy11360 538 QRRAKALLDFER--HDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERS 597 (940)
Q Consensus 538 ~~~a~ALydf~~--~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~~~~ 597 (940)
..+|+++++-.+ -+...|.+++||+|.|..+.-.|-|+|+++|+.|.||-.||+..+...
T Consensus 227 Pa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~~~ 288 (293)
T KOG4792|consen 227 PAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDVQN 288 (293)
T ss_pred ChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeeccCC
Confidence 346777777554 346689999999999999999999999999999999999999876543
No 62
>KOG1451|consensus
Probab=96.26 E-value=0.0043 Score=72.05 Aligned_cols=55 Identities=31% Similarity=0.564 Sum_probs=49.1
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEe-ecCCCceEEEeCCcccccCCcceeee
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIIS-QKDEHCWIGELNGLKGWFPAKFVELL 593 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~-~~d~~WW~G~~~g~~G~fP~nyV~~l 593 (940)
..+.++|...+....+++|..|.++.-+. ...+||..|+++|.+|++|+|||+.+
T Consensus 757 rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 757 RRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred ccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence 46889999999999999999999998665 55689999999999999999999864
No 63
>KOG4381|consensus
Probab=96.12 E-value=0.0048 Score=69.73 Aligned_cols=121 Identities=28% Similarity=0.389 Sum_probs=80.5
Q ss_pred ccccchhhhHHHHhcCccccC------CCCccccchhhhhhhhhccccchhhhhhhhhhhccccccCCCCcCChhHHHHH
Q psy11360 616 VRGTLCPALKQILSCGLKRRA------LGEVCHPWLFIEEVATREVEKDFTSVYSRLLLCKTYRLDEDGKVLTPEELLYR 689 (940)
Q Consensus 616 VRg~L~pAl~~ll~hGl~~~~------~~~~~h~W~~ie~~~~~~~~~~~~s~~~r~~l~~sf~ld~~g~~~t~~~~l~~ 689 (940)
....+|..+.+++.|||+... .+....-|.|++..-.. + | .+
T Consensus 56 ~~q~lc~~lE~iL~hgLk~~~~~~~~~~~~~~~FW~~v~~~~~~-~---------------------------p----~~ 103 (368)
T KOG4381|consen 56 PVQNFCNSLEAILSHGLKFAGKATKSSLGNQKTFWGFVRLVLHL-V---------------------------P----RS 103 (368)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhccccccCCCccHHHHHHHHhcc-C---------------------------c----hh
Confidence 344689999999999999222 23344569998772111 0 0 11
Q ss_pred HHHHHhhccccccccccchhhHHHhhhhhhhhHHHHHHHHhcChhHHhhhccccccccCchHHHHhhhcccccCcccccC
Q psy11360 690 CVQAVNQSHDMAHVQMDVKFRSLICLGLNEQVLHLWLEVLCSCEPVVLKWYHPWSFISSPGWVQVKCDLRVLSQFPFNLS 769 (940)
Q Consensus 690 ~i~~i~~~h~~~~~~~d~kf~afIc~~LN~~~L~~Wl~~l~~~~~~i~~~Y~p~sfl~~~~~~~~l~~L~~Ls~~~F~L~ 769 (940)
.|+....--. .=+|=||+|=.+||++.|+.-+..+......++.||.||+++..-.-.-+=-.|..|+...|.++
T Consensus 104 ~~~dl~~I~t-----~vgkgRAwiR~aL~ek~l~~Y~~~~lad~~~~~eFy~~~alm~~e~s~~L~gLl~gLn~i~~~f~ 178 (368)
T KOG4381|consen 104 SIEDLEQIST-----SVGKGRAWIRVALNEKRLSDYLSTLLADEELLSEFYEPWALMDEEESAILPGLLVGLNAIDFSFC 178 (368)
T ss_pred hhhhhccccc-----ccccchHHHHHHhhhhhHHHHHHHHHHhHHHHHHHhcchHHHhHHHHHHHHHhhcCHHHHHHHhh
Confidence 1221111111 23557899999999999999999999999999999999999932222222223677777777777
Q ss_pred CCcC
Q psy11360 770 PDWE 773 (940)
Q Consensus 770 ~d~~ 773 (940)
+|=|
T Consensus 179 v~~~ 182 (368)
T KOG4381|consen 179 VDGE 182 (368)
T ss_pred cchH
Confidence 5533
No 64
>KOG0197|consensus
Probab=95.98 E-value=0.0041 Score=72.37 Aligned_cols=56 Identities=25% Similarity=0.562 Sum_probs=49.7
Q ss_pred cceEEEeecCCCCCCCCccccCCCE-EEEEeecCCCceEEE--eCCcccccCCcceeee
Q psy11360 538 QRRAKALLDFERHDDDELGFRKNDV-ITIISQKDEHCWIGE--LNGLKGWFPAKFVELL 593 (940)
Q Consensus 538 ~~~a~ALydf~~~~~~ELsf~kGdi-I~Vl~~~d~~WW~G~--~~g~~G~fP~nyV~~l 593 (940)
...+.|+|||.+..+.+|+|.+||+ ..+++..+..||..+ ..|..|++|+|||...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 3579999999999999999999999 777788889999976 3789999999999875
No 65
>KOG4429|consensus
Probab=95.94 E-value=0.0032 Score=67.39 Aligned_cols=55 Identities=27% Similarity=0.243 Sum_probs=51.4
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeee
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l 593 (940)
..+.|+|+|.+..++||...+||+..+-++..+|||.|++.|..|-||+.||++.
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 4589999999999999999999999998999999999999999999999999864
No 66
>KOG3771|consensus
Probab=95.85 E-value=0.0074 Score=69.29 Aligned_cols=56 Identities=34% Similarity=0.343 Sum_probs=48.3
Q ss_pred ccceEEEeecCCCCCCCCccccCCCEEEEEeec-CCCceEEEeCCcccccCCcceee
Q psy11360 537 RQRRAKALLDFERHDDDELGFRKNDVITIISQK-DEHCWIGELNGLKGWFPAKFVEL 592 (940)
Q Consensus 537 ~~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~-d~~WW~G~~~g~~G~fP~nyV~~ 592 (940)
....+.|+|||.+++.+||+|..||+|.|+... .+.||.|.+.|..|-+|.+||..
T Consensus 399 ~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~~ 455 (460)
T KOG3771|consen 399 FLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFPL 455 (460)
T ss_pred CccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhcccccccceec
Confidence 345799999999999999999999999999854 46799999999888888888754
No 67
>KOG3557|consensus
Probab=95.51 E-value=0.008 Score=70.88 Aligned_cols=63 Identities=19% Similarity=0.437 Sum_probs=53.8
Q ss_pred ccceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEE-eCCcccccCCcceeeeccccccc
Q psy11360 537 RQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVELLDERSKQY 600 (940)
Q Consensus 537 ~~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~-~~g~~G~fP~nyV~~l~~~~~~~ 600 (940)
...++..+|||.+....||+..+||++.|+... .+||..+ -.|+.|++|+|.+..+.......
T Consensus 499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~-R~WW~~kn~~G~~GyvP~nIL~~~~~~~~~~ 562 (721)
T KOG3557|consen 499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDDG-RKWWKVKNGHGRAGYVPSNILAPLQPEHTGE 562 (721)
T ss_pred cceeeeeehhhhcccchhhhhhhhhhhhhhhcc-ccceeccCccCCCCCcchhhhccCCCccccc
Confidence 445899999999999999999999999999744 5799987 57899999999999887665444
No 68
>KOG0609|consensus
Probab=95.31 E-value=0.0071 Score=70.40 Aligned_cols=55 Identities=33% Similarity=0.631 Sum_probs=46.3
Q ss_pred cceEEEeecCCCCCCC-------CccccCCCEEEEEeecCCCceEEEeC-----CcccccCCcceee
Q psy11360 538 QRRAKALLDFERHDDD-------ELGFRKNDVITIISQKDEHCWIGELN-----GLKGWFPAKFVEL 592 (940)
Q Consensus 538 ~~~a~ALydf~~~~~~-------ELsf~kGdiI~Vl~~~d~~WW~G~~~-----g~~G~fP~nyV~~ 592 (940)
..+++|+|||++..++ .|+|++||++.|++++|..||.++.. +..|.+|+...+.
T Consensus 214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence 3679999999987765 59999999999999999999997742 5679999977654
No 69
>KOG4575|consensus
Probab=95.16 E-value=0.024 Score=66.57 Aligned_cols=58 Identities=29% Similarity=0.509 Sum_probs=47.3
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEe--CCcccccCCcceeeeccc
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVELLDER 596 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~--~g~~G~fP~nyV~~l~~~ 596 (940)
..++|+|.+.++.+++|.|-.||+|+++.-.|..||-+.. ....|+||+|||.-++.+
T Consensus 9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd~r 68 (874)
T KOG4575|consen 9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLDKR 68 (874)
T ss_pred ceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeecccc
Confidence 4689999999999999999999999999887754554543 456799999999665543
No 70
>KOG3725|consensus
Probab=94.80 E-value=0.011 Score=62.33 Aligned_cols=56 Identities=32% Similarity=0.560 Sum_probs=50.2
Q ss_pred cceEEEeecCCCCCCCCccccCCCEEEEEee--cCCCceEEEeCCcccccCCcceeee
Q psy11360 538 QRRAKALLDFERHDDDELGFRKNDVITIISQ--KDEHCWIGELNGLKGWFPAKFVELL 593 (940)
Q Consensus 538 ~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~--~d~~WW~G~~~g~~G~fP~nyV~~l 593 (940)
.+.|+++|||++..+.||++-.+|+|+|..- .|.+|..|+.++++|-+|-.|++.+
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 4579999999999999999999999999764 4788999999999999999998754
No 71
>KOG3775|consensus
Probab=94.80 E-value=0.017 Score=64.09 Aligned_cols=62 Identities=23% Similarity=0.422 Sum_probs=54.0
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEE--eCCcccccCCcceeeeccccccc
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLDERSKQY 600 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~--~~g~~G~fP~nyV~~l~~~~~~~ 600 (940)
..-+|++.|.+..++||.+..||-|.|-...++.|.+|. ..|++|+||+.|+-.++...+..
T Consensus 263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~eed~ 326 (482)
T KOG3775|consen 263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPEEDL 326 (482)
T ss_pred hhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCchhhh
Confidence 356789999999999999999999999888888999998 48999999999999887665443
No 72
>KOG3601|consensus
Probab=94.24 E-value=0.0099 Score=61.64 Aligned_cols=52 Identities=33% Similarity=0.503 Sum_probs=46.5
Q ss_pred EEEeecCCCCCCCCccccCCCEEEEEeecC-CCceEEEeCCcccccCCcceee
Q psy11360 541 AKALLDFERHDDDELGFRKNDVITIISQKD-EHCWIGELNGLKGWFPAKFVEL 592 (940)
Q Consensus 541 a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d-~~WW~G~~~g~~G~fP~nyV~~ 592 (940)
+.|++||.+...+||+|.+||.+.+++..+ -+|...+.+|..|++|.||.+.
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM 55 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence 678999999999999999999999987654 5799999999999999999854
No 73
>KOG3632|consensus
Probab=93.12 E-value=0.05 Score=66.85 Aligned_cols=55 Identities=38% Similarity=0.711 Sum_probs=48.0
Q ss_pred ceEEEeecCCCCCCC-------CccccCCCEEEEEeec-CCCceEEEeCCcccccCCcceeee
Q psy11360 539 RRAKALLDFERHDDD-------ELGFRKNDVITIISQK-DEHCWIGELNGLKGWFPAKFVELL 593 (940)
Q Consensus 539 ~~a~ALydf~~~~~~-------ELsf~kGdiI~Vl~~~-d~~WW~G~~~g~~G~fP~nyV~~l 593 (940)
...+|.|||.+++.+ +|.|+.||||+|..+. +.|.+.|+++|++|.+|+|+++..
T Consensus 1245 ~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~p 1307 (1335)
T KOG3632|consen 1245 RQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEAP 1307 (1335)
T ss_pred hhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCccCccccccccCC
Confidence 467899999987654 8999999999999876 467888999999999999999875
No 74
>KOG0199|consensus
Probab=88.89 E-value=0.51 Score=57.17 Aligned_cols=51 Identities=27% Similarity=0.400 Sum_probs=41.1
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEeecC-CCceEEE--eCCcccccCCcceee
Q psy11360 540 RAKALLDFERHDDDELGFRKNDVITIISQKD-EHCWIGE--LNGLKGWFPAKFVEL 592 (940)
Q Consensus 540 ~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d-~~WW~G~--~~g~~G~fP~nyV~~ 592 (940)
.|++.|| ...++.|-|++||.|+|++... ..||.|+ .+++.|-||.+-|..
T Consensus 378 ~a~~~~d--~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~ 431 (1039)
T KOG0199|consen 378 VARETYD--SIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA 431 (1039)
T ss_pred eeeeecc--ccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence 3555555 5678999999999999998765 4689996 578999999998873
No 75
>KOG4381|consensus
Probab=87.81 E-value=0.19 Score=57.25 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=48.3
Q ss_pred hhhhhhhhcccchhHHHHHHHhcChhhhhccccCcccccCcchhhhhhhhccccCcccccCCCC
Q psy11360 847 FRSLICLGLNEQVLHLWLEVLCSCEPVVLKWYHPWSFISSPGWVQVKCDLRVLSQFPFNLSPDW 910 (940)
Q Consensus 847 ~~~~~~~~ln~~~l~~w~~~~~~~~~~~~~~y~~ws~~~~~g~~~~~~~l~~l~~~~f~l~~d~ 910 (940)
=||||=+||||++|+..+..+.....++..||.||+.+...-=..+--.|..|+-..|++++|=
T Consensus 118 gRAwiR~aL~ek~l~~Y~~~~lad~~~~~eFy~~~alm~~e~s~~L~gLl~gLn~i~~~f~v~~ 181 (368)
T KOG4381|consen 118 GRAWIRVALNEKRLSDYLSTLLADEELLSEFYEPWALMDEEESAILPGLLVGLNAIDFSFCVDG 181 (368)
T ss_pred chHHHHHHhhhhhHHHHHHHHHHhHHHHHHHhcchHHHhHHHHHHHHHhhcCHHHHHHHhhcch
Confidence 4899999999999999999999999999999999999922211123333455565556666543
No 76
>KOG3565|consensus
Probab=85.91 E-value=0.38 Score=58.87 Aligned_cols=57 Identities=23% Similarity=0.513 Sum_probs=49.8
Q ss_pred ccceEEEeecCCCCCCCCccccCCCEEEEEeecC-CCceEEE--eCCcccccCCcceeee
Q psy11360 537 RQRRAKALLDFERHDDDELGFRKNDVITIISQKD-EHCWIGE--LNGLKGWFPAKFVELL 593 (940)
Q Consensus 537 ~~~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d-~~WW~G~--~~g~~G~fP~nyV~~l 593 (940)
..+.+.|+|.|++..+++++...|+++.+++.+. +||=+++ .+|..|.||.+|++..
T Consensus 577 ~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~ 636 (640)
T KOG3565|consen 577 PIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT 636 (640)
T ss_pred CccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence 3467999999999999999999999999998764 5677788 7899999999999864
No 77
>KOG0040|consensus
Probab=84.18 E-value=0.04 Score=69.99 Aligned_cols=58 Identities=29% Similarity=0.573 Sum_probs=53.7
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeeccc
Q psy11360 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDER 596 (940)
Q Consensus 539 ~~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~~~ 596 (940)
.++.|+|||...++.+.+.++||+.+.+......||..+++.+.|++|+.||+.+...
T Consensus 969 ~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 969 ECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 4678999999999999999999999999988999999999999999999999987654
No 78
>KOG2080|consensus
Probab=84.12 E-value=0.51 Score=57.52 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=57.9
Q ss_pred ccccccccccchhhHHHhhhhhhhhHHHHHHHHhcChhHHhhhccccccccCchHHHHhhh-cccccCcccccCCCc
Q psy11360 697 SHDMAHVQMDVKFRSLICLGLNEQVLHLWLEVLCSCEPVVLKWYHPWSFISSPGWVQVKCD-LRVLSQFPFNLSPDW 772 (940)
Q Consensus 697 ~h~~~~~~~d~kf~afIc~~LN~~~L~~Wl~~l~~~~~~i~~~Y~p~sfl~~~~~~~~l~~-L~~Ls~~~F~L~~d~ 772 (940)
.|+.+.+ |+|| .||++|++|.|.--+.++.-.+ +++.||+..||+|.+....++.. +.||++|++.+.-.+
T Consensus 1219 ~~~~l~k--~~k~--~ih~~lr~hll~~l~~~m~~~~-Vt~~myee~sfLrt~~~~t~l~~l~~~l~~~~i~i~~sl 1290 (1295)
T KOG2080|consen 1219 EVDKLPK--EQKT--MIHHALRDHILPGLLPLMRYSP-VTADMYNEPSFLRTPAHMTYLAKLMYSLSEFNITIDPSL 1290 (1295)
T ss_pred hcchhhh--ccch--hhhHHHHhhhhhcccchhhhhH-hHHHHhcCchhhhchhHHHHHHHHHhhHhhceEEecccc
Confidence 3566666 7888 8888888888888888777776 99999999999999987666655 789999999886443
No 79
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=83.96 E-value=1.1 Score=36.64 Aligned_cols=36 Identities=14% Similarity=0.499 Sum_probs=29.8
Q ss_pred cccCCCEEEEEeecCCC-ceEE-EeCCcccccCCccee
Q psy11360 556 GFRKNDVITIISQKDEH-CWIG-ELNGLKGWFPAKFVE 591 (940)
Q Consensus 556 sf~kGdiI~Vl~~~d~~-WW~G-~~~g~~G~fP~nyV~ 591 (940)
.+.+|+.+.++.....+ |++. ..+|.+||+++.|++
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 46789999999887655 9888 579999999999985
No 80
>PF14961 BROMI: Broad-minded protein
Probab=83.15 E-value=6.6 Score=50.70 Aligned_cols=86 Identities=13% Similarity=0.220 Sum_probs=70.0
Q ss_pred hHHHHHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhccccchhhHHHHHHHHHHhChHH-------HHHhhHHHHhc
Q psy11360 283 DQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIV-------LFHSCEPVLVT 355 (940)
Q Consensus 283 ~~~v~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~lp~~~vlRIWD~fl~eG~~v-------lfk~~~~~Ll~ 355 (940)
-+..++.+++..+|.++..|.--|..+..++.+|+-.||-+.+++..++-..=+.+..|... +||..+++|++
T Consensus 1166 ~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkHlq~~ilq 1245 (1296)
T PF14961_consen 1166 SCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKHLQPEILQ 1245 (1296)
T ss_pred HHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHHhhHHHHH
Confidence 35679999999999999999999999999999999999999999988888877888888743 44777777776
Q ss_pred CCCHHHHHHHhhC
Q psy11360 356 LENSAEIFNALSD 368 (940)
Q Consensus 356 ~~d~~ei~~~L~~ 368 (940)
.....++.-+|+.
T Consensus 1246 ~~q~q~L~~flke 1258 (1296)
T PF14961_consen 1246 HTQTQDLQVFLKE 1258 (1296)
T ss_pred hhhhchHHHHhhh
Confidence 5544445555543
No 81
>KOG2080|consensus
Probab=75.33 E-value=9.7 Score=47.13 Aligned_cols=139 Identities=21% Similarity=0.267 Sum_probs=89.6
Q ss_pred cchhhhHHHHhcCccccCCCCccccchhhhhhhhhccc-cchhhhhhhhhhhccccccCCCC--cCChh-HHHHHHHHHH
Q psy11360 619 TLCPALKQILSCGLKRRALGEVCHPWLFIEEVATREVE-KDFTSVYSRLLLCKTYRLDEDGK--VLTPE-ELLYRCVQAV 694 (940)
Q Consensus 619 ~L~pAl~~ll~hGl~~~~~~~~~h~W~~ie~~~~~~~~-~~~~s~~~r~~l~~sf~ld~~g~--~~t~~-~~l~~~i~~i 694 (940)
.+|.-+..+..||+.-.. .+.-.|.-+..|+...-+ ..+++.|... =|++=.=+.+|. ...|. .+|..-+.+|
T Consensus 815 s~cdllekiwshglqikq--gksalW~hlq~y~~n~~~~~s~~~sp~~~-rS~sR~r~~~~a~~~l~PLp~sl~~D~knv 891 (1295)
T KOG2080|consen 815 SGCDLLEKIWSHGLQIKQ--GKSALWGHLQTYVSNLGGYASVEGSPRKM-RSQSRTRSPDGARVVLSPLPTSLAYDLKNV 891 (1295)
T ss_pred HHHHHHHHHHhccccccc--CcchhhHHHHHHHHhhcccccccCCCCcc-chhhcccCCCcceeecCCCcHHHHHHHHHH
Confidence 456667777779988553 345669888887665444 4555544332 233322232322 23332 3444445555
Q ss_pred hhccccccccccchhhHHHhhhhhhhhHHHHHHHHhcChhHHhhhccccccccCch-HHHHhhhccccc
Q psy11360 695 NQSHDMAHVQMDVKFRSLICLGLNEQVLHLWLEVLCSCEPVVLKWYHPWSFISSPG-WVQVKCDLRVLS 762 (940)
Q Consensus 695 ~~~h~~~~~~~d~kf~afIc~~LN~~~L~~Wl~~l~~~~~~i~~~Y~p~sfl~~~~-~~~~l~~L~~Ls 762 (940)
...-+ +|- .=++-||||=++|-.++|+.=|..|.++..++.+.|.|.+|+++-. =+|+|-.|-.|.
T Consensus 892 l~m~e-IKT-diGyaRA~VRLslEkKLL~rHl~~LLSd~~llr~LYK~yAFl~~deEKEQFLyHlLslN 958 (1295)
T KOG2080|consen 892 LRMTE-IKT-DIGYARAFVRLALERKLLHKHLGALLSNSRVLRELYKPYAFVGSDEEKEQFLFHILSLN 958 (1295)
T ss_pred HHHhh-hhh-hhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhccchhccCchHHHHHHHHHHhcc
Confidence 44322 111 1366899999999999999999999999999999999999999765 577776654444
No 82
>KOG1648|consensus
Probab=72.01 E-value=0.49 Score=54.61 Aligned_cols=183 Identities=17% Similarity=0.303 Sum_probs=108.6
Q ss_pred cccccccccCCChHH---HHHHHhcCCCCChhHHHHHHHhccHHH------HhhC----HHHHHHHHHhccCchhHHHHH
Q psy11360 121 ALTWDNLGVISRTDK---LRSMTRQGIPHSLRPQLWLRLSGALEK------KALS----KIKYQDIVKASSSDALAFAKQ 187 (940)
Q Consensus 121 ~~~W~~~~~~~~~~k---Lk~lir~GIP~~lR~~vW~~Llg~~~~------~~~~----~~~Y~~l~~~~~~~~~~~~~q 187 (940)
..-|+++..-+..++ +..-+++|+-...|...|+...+.... ...+ ...|+..+..... .....
T Consensus 533 ~~~W~qy~~d~t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~---~~~~~ 609 (813)
T KOG1648|consen 533 EKFWKQYRADPTIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFR---ANLHR 609 (813)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHh---hheee
Confidence 446888763333333 445567899999999999988775311 1111 2236554333221 23567
Q ss_pred HHHhhhhcCCCCccccCCCCCChhHHhhhhhhheeecCCCc---cc--ceecccCCccceehhhhHHHhhhhhhhhhhcc
Q psy11360 188 IEKDLLRTMPTNACFSTFSSTGVPRLRRILRALAWLFPDIG---GV--VNALDFGSRGWWFESKRKVKRQKSILQNLIFG 262 (940)
Q Consensus 188 IekDl~RT~p~~~~F~~~~~~~~~~L~rIL~Aya~~np~iG---gm--Iaa~~~~~~~~~~~~~~~~~~~~~~~~LLl~~ 262 (940)
|++|+.|...+..+|++ ..+.++ +++...|.-+|-+-| || +-+. ++..
T Consensus 610 ~~kd~e~~~~~~~~fs~--~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p------------------------~~~~ 662 (813)
T KOG1648|consen 610 IDKDVERCDRNLMFFSN--KDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAP------------------------LLVT 662 (813)
T ss_pred ecchhhhCcchheeecC--Ccchhh-heeeeeeeccccccccccchhhccCC------------------------cCCC
Confidence 99999999988888887 566666 889888888888777 77 3333 2233
Q ss_pred Ccccc---ccc-----ccCCcc--cccchhhHHHHHHHHHhhchhHHHHHhhcCCc-chhHHHHHHHHhhccccchhhHH
Q psy11360 263 EEENG---EDI-----KTKNIH--QTGIQADQKVLRSLVASGLPQLEVSLLQHDIE-LSLITLHWFLTLFASVVHFKILL 331 (940)
Q Consensus 263 ~Ee~A---~~l-----l~~~y~--~~gi~~~~~v~~~Ll~~~~P~L~~hL~~~~i~-~~l~~~~WfltLF~~~lp~~~vl 331 (940)
.|.+| +-+ ..+.-+ .+|+...+--++ +++..+|-.. +++ .+-..|+||+.=|.+.+..+-..
T Consensus 663 ~ed~~~~~e~~s~~~~~q~~~~~q~~~~~~~l~~~r-~~~v~~~l~s------~id~~qa~~f~~~~~~~~~~~s~~~~~ 735 (813)
T KOG1648|consen 663 FEDEALTLECFSLLMLRQRGKFPQRPGMSKCLLNLR-LIQVVDPLIS------DIDYAQALSFRWFLLDFKRELSYECTY 735 (813)
T ss_pred hhhcccccCCCcHHHHHhcccCCCCCCccccccccc-chhhhcchhc------chhhhhhcceeeeccCcccccCCCCcc
Confidence 34444 100 001111 333332222222 4444445211 111 23455899999999998888888
Q ss_pred HHHHHHHHh
Q psy11360 332 RIWDLLFLD 340 (940)
Q Consensus 332 RIWD~fl~e 340 (940)
.+|......
T Consensus 736 ~~~~~~~~~ 744 (813)
T KOG1648|consen 736 KVWEVIWAA 744 (813)
T ss_pred eeeEeeccc
Confidence 888776654
No 83
>KOG3812|consensus
Probab=71.97 E-value=1.9 Score=47.90 Aligned_cols=47 Identities=21% Similarity=0.551 Sum_probs=36.8
Q ss_pred EEEeecCCCCCCC-------CccccCCCEEEEEeecCCCceEEEe---CCcccccCC
Q psy11360 541 AKALLDFERHDDD-------ELGFRKNDVITIISQKDEHCWIGEL---NGLKGWFPA 587 (940)
Q Consensus 541 a~ALydf~~~~~~-------ELsf~kGdiI~Vl~~~d~~WW~G~~---~g~~G~fP~ 587 (940)
+++.-+|.+.-++ .++|...|.+.|-++-+.+||-|++ ++..|++|+
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 4455566665444 4889999999999999999999994 556799997
No 84
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=71.64 E-value=3.9 Score=34.13 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=28.5
Q ss_pred cccCCCEEEEEeecCCCceEEEeC-CcccccCCcce
Q psy11360 556 GFRKNDVITIISQKDEHCWIGELN-GLKGWFPAKFV 590 (940)
Q Consensus 556 sf~kGdiI~Vl~~~d~~WW~G~~~-g~~G~fP~nyV 590 (940)
.+.+|+.+.++...+.+|..-+.. |.+||+|..++
T Consensus 26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 367899999998765589998864 99999987665
No 85
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=69.76 E-value=3.5 Score=37.38 Aligned_cols=43 Identities=14% Similarity=0.287 Sum_probs=29.7
Q ss_pred CCCCccccCCCEEEEEeecCCCceEEE-eCCcccccCCcceeee
Q psy11360 551 DDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVELL 593 (940)
Q Consensus 551 ~~~ELsf~kGdiI~Vl~~~d~~WW~G~-~~g~~G~fP~nyV~~l 593 (940)
+.-+|++++|+++.|++..+.+=|.++ ..|+-|++|.+++-..
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~ 72 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL 72 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence 457899999999999999998888888 5899999999988554
No 86
>KOG3705|consensus
Probab=65.51 E-value=8.4 Score=43.94 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=40.6
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEeecCCCceEEE--eCCcccccCCcceee
Q psy11360 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVEL 592 (940)
Q Consensus 540 ~a~ALydf~~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~--~~g~~G~fP~nyV~~ 592 (940)
..+++++..++..+|+.++.||+|.|-...=+|.-+|. ..++.|+||+-=|++
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 47899999999999999999999988653322333344 356889999977765
No 87
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.06 E-value=4.8 Score=42.68 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=31.0
Q ss_pred cccCCCEEEEEeecC-CCceEEE-eCCcccccCCcceee
Q psy11360 556 GFRKNDVITIISQKD-EHCWIGE-LNGLKGWFPAKFVEL 592 (940)
Q Consensus 556 sf~kGdiI~Vl~~~d-~~WW~G~-~~g~~G~fP~nyV~~ 592 (940)
.+.+|+.++|++..+ .+|...+ .+|++||+++.|+..
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~ 87 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLST 87 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcC
Confidence 478999999998775 5788877 589999999999875
No 88
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=53.60 E-value=17 Score=29.89 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=35.4
Q ss_pred HHHHHHhhchhHHHHHhhcCCcchhHHHHHHHHhhcccc
Q psy11360 287 LRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVV 325 (940)
Q Consensus 287 ~~~Ll~~~~P~L~~hL~~~~i~~~l~~~~WfltLF~~~l 325 (940)
|.++--+++|+-.+.|++.||+.++-.++=|++||..+.
T Consensus 6 FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM 44 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVM 44 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHH
Confidence 667788999999999999999999999999999998754
No 89
>KOG2996|consensus
Probab=53.38 E-value=8.4 Score=45.83 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=33.8
Q ss_pred CccccCCCEEEEEeec-CCCceEEEe--CCcccccCCcceeeeccc
Q psy11360 554 ELGFRKNDVITIISQK-DEHCWIGEL--NGLKGWFPAKFVELLDER 596 (940)
Q Consensus 554 ELsf~kGdiI~Vl~~~-d~~WW~G~~--~g~~G~fP~nyV~~l~~~ 596 (940)
-|.+..||++.++..+ ...||.|+. .+..|+||++-|++....
T Consensus 626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~v 671 (865)
T KOG2996|consen 626 RLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSV 671 (865)
T ss_pred ceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCC
Confidence 5789999999987654 467999995 456799999999876443
No 90
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=52.04 E-value=16 Score=29.95 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=27.7
Q ss_pred ccccCCCEEEEEeecCCCceEEEeCCcccccCCcce
Q psy11360 555 LGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590 (940)
Q Consensus 555 Lsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV 590 (940)
-.+.+|..+.|... ..+|.+-+.+|.+||++.+.+
T Consensus 19 ~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence 34678888888854 568999889999999987654
No 91
>KOG2197|consensus
Probab=39.66 E-value=14 Score=44.37 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCCChhHHHHHHHhccHH
Q psy11360 135 KLRSMTRQGIPHSLRPQLWLRLSGALE 161 (940)
Q Consensus 135 kLk~lir~GIP~~lR~~vW~~Llg~~~ 161 (940)
-++....+||++++|+.+|..|+|.+.
T Consensus 69 ~l~~i~~~gi~psir~evw~fll~~y~ 95 (488)
T KOG2197|consen 69 LLKLIILGGIDPSIRGEVWEFLLGCYD 95 (488)
T ss_pred hheeeecCCCCCcccchhHHHHhcccC
Confidence 344445699999999999999999874
No 92
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=38.18 E-value=28 Score=29.07 Aligned_cols=25 Identities=20% Similarity=0.582 Sum_probs=21.1
Q ss_pred cccCCCEEEEEeecCCCceEEEeCC
Q psy11360 556 GFRKNDVITIISQKDEHCWIGELNG 580 (940)
Q Consensus 556 sf~kGdiI~Vl~~~d~~WW~G~~~g 580 (940)
.|++|+.|.+....+..||.|.+..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~ 26 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTK 26 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEE
Confidence 4889999999987788999998543
No 93
>KOG4384|consensus
Probab=36.11 E-value=31 Score=39.11 Aligned_cols=57 Identities=35% Similarity=0.598 Sum_probs=48.0
Q ss_pred eEEEeecCC--CCCCCCccccCCCEEEEEeecCCCceEEEeCCcccccCCcceeeeccc
Q psy11360 540 RAKALLDFE--RHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDER 596 (940)
Q Consensus 540 ~a~ALydf~--~~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~~g~~G~fP~nyV~~l~~~ 596 (940)
.+.+.-+|. +.+.++|..++||+|.++.+..-+-|.|-++++.|-|+.-||..+...
T Consensus 138 ~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s~e 196 (361)
T KOG4384|consen 138 RARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVISEE 196 (361)
T ss_pred cccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceecccccc
Confidence 455555665 456789999999999999999999999999999999999999887543
No 94
>KOG1314|consensus
Probab=31.61 E-value=49 Score=37.55 Aligned_cols=48 Identities=27% Similarity=0.495 Sum_probs=32.9
Q ss_pred CCCCCccccCCCEEEEEeecCCCceEEEe-------CC----cccccCCcc-eeeeccccc
Q psy11360 550 HDDDELGFRKNDVITIISQKDEHCWIGEL-------NG----LKGWFPAKF-VELLDERSK 598 (940)
Q Consensus 550 ~~~~ELsf~kGdiI~Vl~~~d~~WW~G~~-------~g----~~G~fP~ny-V~~l~~~~~ 598 (940)
.++--+++++||.|.+..- -.+|..|+. .| -+||||.+. |+......+
T Consensus 329 ~ddprisL~p~d~i~~tr~-~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~e~~~~ 388 (414)
T KOG1314|consen 329 TDDPRISLPPGDGIKATRG-FNHWLYGEEILSEMFNESRERKIRGWFPRNCAVEKCEKDYE 388 (414)
T ss_pred CCCcccccCCCcceeeeee-eecccchhhhhhHHHhhcchhhhccccccccccccccccCC
Confidence 4455799999999987654 457888841 11 369999988 666554443
No 95
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=31.48 E-value=38 Score=40.40 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=31.9
Q ss_pred ccccCCCEEEEEeecCCCceEEEe-CCcccccCCcceee
Q psy11360 555 LGFRKNDVITIISQKDEHCWIGEL-NGLKGWFPAKFVEL 592 (940)
Q Consensus 555 Lsf~kGdiI~Vl~~~d~~WW~G~~-~g~~G~fP~nyV~~ 592 (940)
=++.+|+.|.|+...+.+|+.-+. +|++||+-+.|+..
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~ 141 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD 141 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence 457899999998656678999997 59999999999874
No 96
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=31.42 E-value=39 Score=35.85 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=32.4
Q ss_pred ccccCCCEEEEEeecCC-CceEEEe-CCcccccCCcceeeec
Q psy11360 555 LGFRKNDVITIISQKDE-HCWIGEL-NGLKGWFPAKFVELLD 594 (940)
Q Consensus 555 Lsf~kGdiI~Vl~~~d~-~WW~G~~-~g~~G~fP~nyV~~l~ 594 (940)
=++++|+.++|+..... +|...+. +|+.||||+.++..-.
T Consensus 48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~ 89 (205)
T COG3103 48 GSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEP 89 (205)
T ss_pred eEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcccc
Confidence 36799999999988765 6878884 7899999998887543
No 97
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.73 E-value=73 Score=28.37 Aligned_cols=25 Identities=20% Similarity=0.631 Sum_probs=19.0
Q ss_pred CccccCCCEEEEEeec------CCCceEEEe
Q psy11360 554 ELGFRKNDVITIISQK------DEHCWIGEL 578 (940)
Q Consensus 554 ELsf~kGdiI~Vl~~~------d~~WW~G~~ 578 (940)
=|+++.||.+.|-... +.+||.|..
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 3788999999775433 578999983
No 98
>KOG0116|consensus
Probab=20.02 E-value=33 Score=40.31 Aligned_cols=93 Identities=19% Similarity=0.186 Sum_probs=61.3
Q ss_pred hHHHHHHHHhcChhHHhhhccccccccCchHHHHhhhcccccCcc-cccCCCcCCCCCCCC---CC-cccccccchhccc
Q psy11360 721 VLHLWLEVLCSCEPVVLKWYHPWSFISSPGWVQVKCDLRVLSQFP-FNLSPDWELPPKKGQ---SQ-PLKDGVATREVEK 795 (940)
Q Consensus 721 ~L~~Wl~~l~~~~~~i~~~Y~p~sfl~~~~~~~~l~~L~~Ls~~~-F~L~~d~~~~~~~~~---~~-~~~~~~~~~~~~~ 795 (940)
.+.+...+|+..|+.|.+||...|-+-+++.+.....+-.+...+ +.+.+|+++...+.. +| .+.....-.+..-
T Consensus 20 Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~tvdsQ~S~~~GvvI~VtG~ 99 (419)
T KOG0116|consen 20 FVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEISTVDSQASLEKGVVIMVTGY 99 (419)
T ss_pred HHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEEEehhhhccCCeEEEEEEE
Confidence 367889999999999999999999999998776654433333333 556667766655542 22 3344443333333
Q ss_pred cc-cccchhhhhccccccCC
Q psy11360 796 DF-TSVYSRLLLCKTYRLDE 814 (940)
Q Consensus 796 ~~-~s~~sr~~l~~~~~l~~ 814 (940)
.. ...+.| .+||||=|-.
T Consensus 100 lt~~~~~rR-kF~QtFfLap 118 (419)
T KOG0116|consen 100 LTNKDGPRR-KFSQTFFLAP 118 (419)
T ss_pred EEeCCCcce-EEEEEEEEee
Confidence 22 334455 9999999983
Done!