RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11360
(940 letters)
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 178 bits (452), Expect = 1e-49
Identities = 71/346 (20%), Positives = 120/346 (34%), Gaps = 77/346 (22%)
Query: 69 GFRVEEEDGPEQNSNKLLSEPFIEDPQHRLQ-WVAYLEFNSSSANSPGKEESEALTWDNL 127
G + E+ KL E + W L T
Sbjct: 1 GSHMASENDLLNKRLKLDYEEITPCLKEVTTVWEKMLS-----------------TPGRS 43
Query: 128 GVISRTDKLRSMTRQGIPHSLRPQLWLRLSGALEKKALSKIK-------YQDIVKASSSD 180
+ +K+ S QG+P R ++W L+ K K Y++++K +S
Sbjct: 44 KIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQLTSQ 103
Query: 181 ALAFAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILRALAWLFPDIG-----GVVNALD 235
I DL RT PT+ FS G L IL+A + L ++G V +
Sbjct: 104 Q----HAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGIL 159
Query: 236 FGSRGWWFESKRKVKRQKSILQNLIFGEEENG--------EDIKTKNIHQT---GIQADQ 284
L+ EE D+ + ++ +Q
Sbjct: 160 -----------------------LLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQM 196
Query: 285 KVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIV 344
L L+ L L +H+I SL WFLT+FAS + R++D++FL G+ V
Sbjct: 197 YQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEV 256
Query: 345 LF-------HSCEPVLVTLENSAEIFNALSDIPGD--IVDIDNLLE 381
+F S +P+++ EN I + + + +V ++ +
Sbjct: 257 IFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTIN 302
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 169 bits (431), Expect = 4e-47
Identities = 59/330 (17%), Positives = 118/330 (35%), Gaps = 67/330 (20%)
Query: 124 WDNLGVISRTDKLRSMTRQGIPHSLRPQLWLRLSGALEKKALSKIKYQDIVKASSSDALA 183
W + + +R L ++ + G+P +LR ++W L+G + +A+ +Y+ ++ S+
Sbjct: 15 WHS-NLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLD-RYRILITKDSAQE-- 70
Query: 184 FAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILRALAWLFPDIG------GVVNALDFG 237
I +D+ RT P + F G L +I +A + DIG + L
Sbjct: 71 --SVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVL--- 125
Query: 238 SRGWWFESKRKVKRQKSILQNLIFGEEENG--------EDIKTKNIHQT---GIQADQKV 286
L+ EE D +++++ +
Sbjct: 126 ---------------------LLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQ 164
Query: 287 LRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLF 346
L L+ LP L ++E + WFLTLF + ++ I DLL +G ++F
Sbjct: 165 LERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIF 224
Query: 347 HSCEPVLVTL--ENSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGDIVDIDNLL 404
H V + L + ++ A D + L+ L + L+
Sbjct: 225 H----VALALLKTSKEDLLQA---------DFEGALKF---FRVQLPKRYRAEENARRLM 268
Query: 405 EVSFSVSTSISQSLIDSHRRRHLAFLMSDQ 434
E + ++ + + + + + S
Sbjct: 269 EQACNI--KVPTKKLKKYEKEYQTMRESQL 296
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 146 bits (371), Expect = 7e-39
Identities = 55/320 (17%), Positives = 103/320 (32%), Gaps = 76/320 (23%)
Query: 116 KEESEALTWDNL-----GVISRTDKLRSMTRQGIPHSLRPQLWLRLSGALEKK------- 163
+ + LTW+N + + K+R + QGIP S+R ++W G
Sbjct: 16 FQGNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDI 75
Query: 164 --ALSKIKYQDI-----------VKASSSDALAFAKQIEKDLLRTMPTNACFSTFSSTGV 210
A +K +++ + S++D A + I+ D+ RT P F
Sbjct: 76 CLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYH 134
Query: 211 PRLRRILRALAWLFPDIG------GVVNALDFGSRGWWFESKRKVKRQKSILQNLIFGEE 264
L IL A PD+G + L ++ +
Sbjct: 135 DMLHSILGAYTCYRPDVGYVQGMSFIAAVL------------------------ILNLDT 170
Query: 265 ENG--------EDIKTKNIHQT---GIQADQKVLRSLVASGLPQLEVSLLQHDIELSLIT 313
+ + + LP+L ++++ +
Sbjct: 171 ADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYL 230
Query: 314 LHWFLTLFASVVHFKILLRIWDLLFLDGSIVLF-------HSCEPVLVTLENSAEIFNAL 366
+ W TL++ + + RIWD+ DG LF E +L + + + L
Sbjct: 231 IDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKM-DFIHMAQFL 289
Query: 367 SDIPGDIVDIDNLLEVGAEI 386
+ +P D+ + L A I
Sbjct: 290 TRLPEDL-PAEELFASIATI 308
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 112 bits (281), Expect = 8e-30
Identities = 62/74 (83%), Positives = 68/74 (91%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S RRAKALLDFERHDDDELGFRKND+ITIISQKDEHCW+GELNGL+GWFPAKFVE+L
Sbjct: 3 SGSSGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVL 62
Query: 594 DERSKQYSLAGDDS 607
DERSK+YS+A S
Sbjct: 63 DERSKEYSIASGPS 76
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 107 bits (269), Expect = 3e-28
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 522 SHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL 581
+H+ H + + R RA+AL DF + EL F+ DVI ++S+ ++ G + G
Sbjct: 2 NHKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGA 61
Query: 582 KGWFPAKFVELLDERSKQ 599
G FP FV++L + ++
Sbjct: 62 TGIFPLSFVKILKDFPEE 79
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 113 bits (284), Expect = 2e-27
Identities = 65/320 (20%), Positives = 98/320 (30%), Gaps = 51/320 (15%)
Query: 124 WDNL--GVISRTDKLRSMTRQGIPHSLRPQLWLRLSGALE-------------KKALSKI 168
+ L G + ++LR ++ GIP +RP W LSG L +K
Sbjct: 29 FKQLLAGPNTDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAF 88
Query: 169 KYQDIVKASSSDALAFAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILRALAWLFPDIG 228
+ +QI D+ R P RIL A P G
Sbjct: 89 IEHYYDSRNDEVHQDTYRQIHIDIPRMSPEALILQP---KVTEIFERILFIWAIRHPASG 145
Query: 229 GV--VNAL------DFGSRGWWFESKRKVKRQKSILQNLIFGEE----------ENGEDI 270
V +N L F E V + L E + +D
Sbjct: 146 YVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDN 205
Query: 271 KTKNIHQTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKIL 330
T Q GIQ K+L LV+ Q+ L QH++ W L V +
Sbjct: 206 YTFA--QPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCT 263
Query: 331 LRIWDLLFLDG----------SIVLFHSCEPVLVTLENSAEIFNALSDIPG---DIVDID 377
+R+WD + ++ ++ E+ L ++P D DI
Sbjct: 264 IRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDIS 323
Query: 378 NLLEVGAEIFNALSDIPGDI 397
LL + A +D P
Sbjct: 324 LLLAEAYRLKFAFADAPNHY 343
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 102 bits (256), Expect = 2e-26
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S R KAL F+ DDEL K D++ I +K+E W G LNG KG FPA +VE L
Sbjct: 3 SGSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEEL 62
Query: 594 DERSKQYSL--AGDDS 607
+ + +G S
Sbjct: 63 PSNAGNTATKASGPSS 78
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 102 bits (256), Expect = 3e-26
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
R+RR + + +DDEL + D+I ++ + +E W G LNG G FP+ F++ L
Sbjct: 14 GERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKEL 73
Query: 594 DERSKQYSLAGDD 606
S + ++ D+
Sbjct: 74 SGESDELGISQDE 86
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 101 bits (254), Expect = 3e-26
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S RAKAL ++ + +L F K DVI + Q DE+ + GE+NG+ G FPA VE++
Sbjct: 3 SGSSGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVI 62
Query: 594 DERS 597
S
Sbjct: 63 SGPS 66
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 100 bits (250), Expect = 1e-25
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 523 HQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLK 582
H + R+ +A+ DFE +D+EL F+ ++IT++ D + W GE +
Sbjct: 2 GHHHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGI 61
Query: 583 GWFPAKFVEL 592
G FP+ FV
Sbjct: 62 GLFPSNFVTA 71
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 99.7 bits (249), Expect = 2e-25
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S +AL DFE ++ ELGF++ D+IT+ +Q DE+ + G L+G G+FP +VE+L
Sbjct: 3 SGSSGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEIL 62
Query: 594 DERSKQYSLAG 604
+G
Sbjct: 63 VALPHSGPSSG 73
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 106 bits (266), Expect = 1e-24
Identities = 54/259 (20%), Positives = 80/259 (30%), Gaps = 37/259 (14%)
Query: 124 WDNL---GVISRTDKLRSMTRQGIPHSLRPQLWLRLSGAL-------EKKALSKIK-YQD 172
+DN+ I LR ++ GIP RP +W L G L E K K Y+D
Sbjct: 11 FDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRD 70
Query: 173 IVKASSSDA----LAFAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILRALAWLFPDIG 228
+K + SD + QIE D+ RT P + + L+RIL A P G
Sbjct: 71 SLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQ--FKSVQNSLQRILYLWAIRHPASG 128
Query: 229 GVVNALDFGSRGWWFESKRKVKRQKSILQNLIFGEEENGEDIKTKNIH------------ 276
V D + + + + + ++ T
Sbjct: 129 YVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQ 188
Query: 277 --------QTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFK 328
Q GI K L LV L +E W L
Sbjct: 189 ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMG 248
Query: 329 ILLRIWDLLFLDGSIVLFH 347
++R+WD + S +
Sbjct: 249 TVIRMWDTYLSETSQEVTS 267
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 96.9 bits (242), Expect = 1e-24
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S R A+A DF+ EL +K D++ I Q D++ + GE +G G FP ++ELL
Sbjct: 3 SGSSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELL 62
Query: 594 DERS 597
S
Sbjct: 63 SGPS 66
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 97.4 bits (243), Expect = 1e-24
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S Q KA +F++ ++DEL K D+I + ++ W G LNG GWFP+ +V +
Sbjct: 6 SGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREI 65
Query: 594 DERSKQYSLAG 604
+ +G
Sbjct: 66 KSSERSGPSSG 76
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 96.3 bits (240), Expect = 3e-24
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S A+A+ D + EL F+ DVI ++ ++ W G+++ +GWFPA FV L
Sbjct: 6 SGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLW 65
Query: 594 DERSKQYSLAGDDS 607
+ + S
Sbjct: 66 VNQEDEVEEGSGPS 79
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 94.7 bits (236), Expect = 8e-24
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S +A+AL + D+ L F K+D+IT++ ++ E+ W GE++G +GWFP +V+++
Sbjct: 6 SGVENLKAQALCSWTAKKDNHLNFSKHDIITVL-EQQENWWFGEVHGGRGWFPKSYVKII 64
Query: 594 DERSKQYS 601
S
Sbjct: 65 PGSESGPS 72
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 93.8 bits (234), Expect = 1e-23
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S RR + + +DDEL + D+I ++ + +E W G LNG G FP+ F++ L
Sbjct: 3 SGSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKEL 62
Query: 594 DERS 597
S
Sbjct: 63 SGPS 66
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 93.5 bits (233), Expect = 2e-23
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD- 594
+ + AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 3 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDP 62
Query: 595 -ERSKQYSLAG 604
+ + + +L G
Sbjct: 63 AQSASRENLGG 73
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 93.0 bits (232), Expect = 2e-23
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
+ RR +AL DFE +D+EL F+ ++IT++ D + W GE + G FP+ FV
Sbjct: 1 AGHMARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT 59
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 93.6 bits (233), Expect = 2e-23
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL---KGWFPAKFV 590
S ++ RR K + D + +DDEL F + +VI + ++D+ WIG + G KG FP FV
Sbjct: 6 SGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
Query: 591 ELLDERS 597
+L +
Sbjct: 66 HILSDSG 72
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 93.3 bits (232), Expect = 4e-23
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 529 AYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAK 588
+ ++ R+ +AL DFE +D+EL F+ ++I ++ D + W GE + G FP+
Sbjct: 8 SEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSN 67
Query: 589 FVELLDERSKQYS 601
FV + +
Sbjct: 68 FVTTNLNIETEAA 80
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 92.3 bits (230), Expect = 4e-23
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S AL F ++++L R D+IT++ +E W G++ G+FPA FV+ L
Sbjct: 3 SGSSGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRL 62
Query: 594 DERS 597
S
Sbjct: 63 SGPS 66
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 92.8 bits (231), Expect = 5e-23
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFVEL 592
S + A+AL D+ D L F++ND+ITI + E+ W +G+LNG +G FP VE+
Sbjct: 6 SPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEI 65
Query: 593 LDE 595
L
Sbjct: 66 LLS 68
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 91.9 bits (229), Expect = 9e-23
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
Q KAL DFE +D ELGFR+ D+IT+ +Q DE+ + G L+G G+FP +V++L
Sbjct: 9 PPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVL 68
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 91.1 bits (227), Expect = 1e-22
Identities = 21/64 (32%), Positives = 28/64 (43%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S + +AL FE DEL F + D+I I D + W G G G P+ +V
Sbjct: 3 SGSSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 62
Query: 594 DERS 597
S
Sbjct: 63 SGPS 66
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 91.3 bits (227), Expect = 2e-22
Identities = 24/66 (36%), Positives = 32/66 (48%)
Query: 529 AYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAK 588
Y + A AL D++ DDE+ F +D+IT I D+ W G G G FPA
Sbjct: 8 TYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPAN 67
Query: 589 FVELLD 594
+VEL
Sbjct: 68 YVELRQ 73
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 90.4 bits (225), Expect = 2e-22
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQK---DEHCWIGELNGLKGWFPAKFV 590
S S A+AL D DEL F + D++TI+ Q E W L+G +G PA +
Sbjct: 3 SGSSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRL 62
Query: 591 ELLDERS 597
++L S
Sbjct: 63 QILSGPS 69
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 90.5 bits (225), Expect = 3e-22
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIIS--QKDEHCWIGELNGLKGWFPAKFVE 591
S R+A+ L D++ + EL ++VIT+ S D +GE KG P ++E
Sbjct: 13 ESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLE 72
Query: 592 LLDE 595
LL+
Sbjct: 73 LLNS 76
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 88.7 bits (221), Expect = 7e-22
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
R A+AL DFE ++DELGFR +V+ ++ + W G L+ G FPA +V +
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 88.7 bits (221), Expect = 8e-22
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+ RA+AL DF + EL F+ DVI ++S+ ++ G + G G FP FV++L
Sbjct: 2 IKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 88.5 bits (220), Expect = 1e-21
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S A A D+ EL F+K + + + + W G NG+ G P +++ +
Sbjct: 5 SSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQ 64
Query: 594 DE 595
D
Sbjct: 65 DT 66
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 88.0 bits (219), Expect = 1e-21
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSK 598
+ A+ DF+ EL +K D++ I + D++ GE +G G FPA +VE+L
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLEHH 61
Query: 599 Q 599
Sbjct: 62 H 62
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 88.2 bits (219), Expect = 2e-21
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 532 DVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQK--DEHCWIGELNGLKGWFPAKF 589
D + K + +E +DDEL ++ D++T+I++ D W GELNG +G FP F
Sbjct: 3 DSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNF 62
Query: 590 VELLDERSKQ 599
V+LL ++
Sbjct: 63 VKLLPPDFEK 72
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 88.1 bits (219), Expect = 2e-21
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDE 595
S + +AL D+ + DEL D++ +I + ++ W E NG +G+ P ++E L
Sbjct: 6 SGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSG 65
Query: 596 RS 597
S
Sbjct: 66 PS 67
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 88.1 bits (219), Expect = 2e-21
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQ--KDEHCWIGELNGLKGWFPAKFVE 591
S S K + +E +DDEL ++ D++T+I++ D W GELNG +G FP FV+
Sbjct: 3 SGSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62
Query: 592 LLDERS 597
LL S
Sbjct: 63 LLSGPS 68
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 87.7 bits (218), Expect = 2e-21
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
Q + L DFE + ELGF++ D+IT+ +Q DE+ + G ++G G+FP +VE++
Sbjct: 3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVI 58
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 87.4 bits (217), Expect = 3e-21
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQ--KDEHCWIGELNGLKGWFPAKFVE 591
S S A A +F D EL R+ DV+ I S+ D+ W GE NG GWFP+ +VE
Sbjct: 3 SGSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
Query: 592 LLDERSK 598
+S
Sbjct: 63 EEGIQSG 69
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 87.5 bits (217), Expect = 4e-21
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQ 599
+A +D L D++ + W GE+NG KG FP V++ D ++
Sbjct: 20 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPD 79
Query: 600 YSLAGDDS 607
+ +G S
Sbjct: 80 ENESGPSS 87
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 86.9 bits (216), Expect = 4e-21
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFVEL 592
S + R+AKAL + D EL F V + E W G LNG G P +VE
Sbjct: 6 SGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65
Query: 593 LDERS 597
L S
Sbjct: 66 LSGPS 70
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 86.6 bits (215), Expect = 6e-21
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNG-LKGWFPAKFVEL 592
S S R KAL D++ DEL F + +I +S++ W G+ ++ +FP+ +VE
Sbjct: 3 SGSSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVED 62
Query: 593 LDERS 597
+ S
Sbjct: 63 ISGPS 67
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 87.1 bits (216), Expect = 7e-21
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVE 591
A A F+ + EL FRK + I +I + +E+ + G + G +G FPA +V+
Sbjct: 13 QVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72
Query: 592 LLDERSKQYS 601
+ E +
Sbjct: 73 VSREPRLRLC 82
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 86.3 bits (214), Expect = 7e-21
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 537 RQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDE 595
+ R +D D L +K D+I IIS+ W+G LN G F +V++L
Sbjct: 10 GRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSS 68
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 86.1 bits (214), Expect = 8e-21
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL--KGWFPAKFVE 591
S S A A +F E+ FRK + IT++ Q DE+ + G + G +G FP +V+
Sbjct: 3 SGSSGGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62
Query: 592 LLDE 595
++
Sbjct: 63 VISG 66
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 85.3 bits (212), Expect = 1e-20
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S + L F +EL +++ ++ + +++ NG KG P ++E +
Sbjct: 3 SGSSGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPV 62
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 85.0 bits (211), Expect = 2e-20
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S A+ D+ D+ +L F + + I I+ Q W GE G G+ PA V
Sbjct: 3 SGSSGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKH 62
Query: 594 DERS 597
S
Sbjct: 63 SGPS 66
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 92.0 bits (228), Expect = 2e-20
Identities = 46/289 (15%), Positives = 84/289 (29%), Gaps = 33/289 (11%)
Query: 117 EESEALTWDNLGVISRTDKLRS-MTRQGIPHSLRPQLWLRLSGALEKKALSKIKYQDIVK 175
EE ++L T+KL + R +P R +W L G L S K
Sbjct: 24 EEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMM--- 80
Query: 176 ASSSDALAFAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILRALAWLFPDIGGVVNALD 235
+ K+ D+L + S + LR L + D
Sbjct: 81 --------YRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLPRSPSFPLEPDD 132
Query: 236 FGSRGWWFESKRKVKRQKS---ILQNLIFGEEENGEDIKTKNIHQTGIQADQKVLRSLVA 292
+ V+ I + + ++ + K +
Sbjct: 133 EVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTK---------YRDSLPQLPKAFEQYLN 183
Query: 293 SGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSIVLFHSC--- 349
+L L L WF FA + L R+WD + +L
Sbjct: 184 LEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEI 243
Query: 350 ----EPVLVTLENSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIP 394
+ ++ L ++ +I L +IP D D ++ ++++ P
Sbjct: 244 LLTFKIKVMALNSAEKITKFLENIPQD--SSDAIVSKAIDLWHKHCGTP 290
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 84.9 bits (211), Expect = 2e-20
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+ KAL D++ DEL F++ D I + + W GELNG +GW PA +V+ +
Sbjct: 3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 85.6 bits (212), Expect = 2e-20
Identities = 15/84 (17%), Positives = 28/84 (33%)
Query: 524 QSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKG 583
+ A ++ +DEL K + ++ + + W G NG G
Sbjct: 3 SGSSGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVG 62
Query: 584 WFPAKFVELLDERSKQYSLAGDDS 607
WFP+ +V + + S
Sbjct: 63 WFPSNYVTEEGDSPLGDHVGSGPS 86
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 84.1 bits (209), Expect = 2e-20
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
+ +AL DF + EL F++ DVIT+I++ D + W G+LN +G FP+ +V +
Sbjct: 2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYN 58
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 84.3 bits (209), Expect = 4e-20
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIIS---QKDEHCWIGELNGLKGWFPAKFVEL 592
S KAL D+E DDEL F + +I I++ Q D+ W GE NG G FP+ VE
Sbjct: 6 SGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEE 65
Query: 593 LDE 595
L
Sbjct: 66 LSS 68
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 83.5 bits (207), Expect = 5e-20
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 535 RSRQRRAKALLDFE--RHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
++ A+ + +D L +++ + W GE NG +G FP V L
Sbjct: 3 QNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRL 62
Query: 593 LDERS 597
LD+++
Sbjct: 63 LDQQN 67
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 83.6 bits (207), Expect = 7e-20
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHC--WIGELNGLKGWFPAKFVE 591
+ ++ AL FE +L F+ D IT+IS+ D H W G+L G G FPA +V
Sbjct: 13 NLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 72
Query: 592 LLDERS 597
+ S
Sbjct: 73 MNSGPS 78
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 83.0 bits (206), Expect = 7e-20
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVELLD 594
A A D++ +D+EL F +ND I I D+ W+GEL +G KG FP+ +V L +
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 58
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 83.0 bits (206), Expect = 7e-20
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDE 595
A D++ DDEL ++IT I ++D W G++NG +G FP FV + +
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKK 58
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 83.5 bits (207), Expect = 8e-20
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S A A + EL FR+ DV+ + + W GE NG++G P K++ L
Sbjct: 6 SGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLP 65
Query: 594 DERSKQYSLAG 604
KQ AG
Sbjct: 66 AGTEKQVVGAG 76
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 82.7 bits (205), Expect = 1e-19
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSK 598
R+ K L ++ ++DEL + D+I I + +E W G LN G FP+ FV+ L+
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELEHH 61
Query: 599 Q 599
Sbjct: 62 H 62
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 82.3 bits (204), Expect = 1e-19
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S++R+ K L ++ ++DEL + D+I I + +E W G LN G FP+ FV+ L
Sbjct: 3 LGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKEL 62
Query: 594 DE 595
+
Sbjct: 63 EV 64
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 83.2 bits (206), Expect = 2e-19
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+ + A+ D+ +++DEL F K +I ++++ D W GE+NG+ G FP+ +V++
Sbjct: 30 AFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMT 89
Query: 594 DERSK 598
+ S
Sbjct: 90 TDSSG 94
Score = 28.5 bits (64), Expect = 3.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 579 NGLKGWFPAKFVELLDERSKQ 599
+G KGWFPA V+LL S++
Sbjct: 6 SGQKGWFPASHVKLLGPSSER 26
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 81.9 bits (203), Expect = 2e-19
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 533 VSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
+ + + L D++ EL +K D++T+++ ++ W E+NG +G+ PA +++
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60
Query: 593 LD 594
LD
Sbjct: 61 LD 62
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 81.9 bits (203), Expect = 2e-19
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S + Q +A +F++ ++DEL F K DVI + ++ W G NG GWFP+ +V +
Sbjct: 2 SANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 81.9 bits (203), Expect = 2e-19
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQ--KDEHCWIGELNGLKGWFPAKFVELLDE 595
K + +E +DDEL ++ D++T+I++ D W GELNG +G FP FV+LL
Sbjct: 2 SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP 61
Query: 596 RSKQ 599
Sbjct: 62 LEHH 65
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 81.1 bits (201), Expect = 3e-19
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEH--CWIGELNGLKGWFPAKFVELL 593
+A AL F + +L FRK DVITI+ + D W G +NG +G FPA +VEL+
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 81.6 bits (202), Expect = 4e-19
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 531 ADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
RS + A+ D+ + +DEL F++ +I +I + D+ + G +NG+ G FP +V
Sbjct: 10 PWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69
Query: 591 ELLDE 595
E +
Sbjct: 70 ESISG 74
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 81.1 bits (201), Expect = 4e-19
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+ KAL ++ D DEL F ND+I II + W G L G +G FP +V +
Sbjct: 5 SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 81.4 bits (201), Expect = 4e-19
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 522 SHQSDHDAYADVSRSRQRRAKALLDFER-HDDDELGFRKNDVITIISQKDEHCWIGELNG 580
S H + + + +AL DF HD L R DVIT++ Q + W G ++
Sbjct: 2 SSHHHHHHSSGLVPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHE 61
Query: 581 LK------GWFPAKFVELLDER 596
+ G+FP VE++ +R
Sbjct: 62 SQRGTDRIGYFPPGIVEVVSKR 83
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 80.7 bits (200), Expect = 6e-19
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S A AL D++ DDE+ F +D+IT I D+ W G G G FPA +VEL
Sbjct: 5 SSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 80.0 bits (198), Expect = 9e-19
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+A +F++ ++DEL F K DVI + ++ W G NG GWFP+ +V +
Sbjct: 2 PLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 79.9 bits (198), Expect = 1e-18
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFVELLDERSK 598
D++ DDEL R ++I + + E W GELNG +G FP FV+ + ++
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRETE 62
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 79.5 bits (197), Expect = 1e-18
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
+AL DF+ +D ELGFR+ D I ++ D + W G +G G FP +V ++
Sbjct: 4 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAVN 58
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 79.5 bits (197), Expect = 1e-18
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 537 RQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVE 591
+ + +AL FE DEL F + D+I I D + W G G G P+ +V
Sbjct: 2 QVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 78.9 bits (195), Expect = 2e-18
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQ 599
+A +D L D++ + W GE+NG KG FP V++ D ++
Sbjct: 5 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPD 64
Query: 600 YS 601
+
Sbjct: 65 EN 66
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 78.8 bits (195), Expect = 2e-18
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
A A D+ EL F+K + + + E W G NG+ G P +++ +
Sbjct: 2 PLGSPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 78.9 bits (195), Expect = 3e-18
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 534 SRSRQRRAKALLDFERHD-DDELGFRKNDVITIISQKDEHCW-IGEL--NGLKGWFPAKF 589
S ++++ K + L F + DVIT++ +++ W GE + +GWFP+ +
Sbjct: 2 SHMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSY 61
Query: 590 VELLDE 595
+LL+E
Sbjct: 62 TKLLEE 67
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 79.4 bits (196), Expect = 3e-18
Identities = 17/73 (23%), Positives = 36/73 (49%)
Query: 523 HQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLK 582
S H + + + AL D++ E+ +K D++T+++ ++ W E+N +
Sbjct: 2 RGSHHHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQ 61
Query: 583 GWFPAKFVELLDE 595
G+ PA +V+ L
Sbjct: 62 GFVPAAYVKKLAA 74
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 79.0 bits (195), Expect = 3e-18
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 534 SRSRQRRAKALLDFERHD-------DDELGFRKNDVITIISQKDEH-CWIGELNGLKGWF 585
S S RR AL D++ + + EL F D+IT+ + DE + GELNG KG
Sbjct: 3 SGSSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLV 62
Query: 586 PAKFVELL 593
P+ F+E +
Sbjct: 63 PSNFLEEV 70
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 78.0 bits (193), Expect = 5e-18
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 537 RQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
+ + +AL +E ++L F++ D+I ++S+ +E GE G G FP FVE
Sbjct: 4 KGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA 61
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 77.7 bits (192), Expect = 6e-18
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHC---WIGELNGLKGWFPAKFVELL 593
AKAL D DEL FRK D++T++ Q + W+ L+G +G P +++L
Sbjct: 5 LAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKIL 61
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 77.8 bits (192), Expect = 9e-18
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
+ AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD
Sbjct: 2 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 58
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 76.8 bits (190), Expect = 1e-17
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVE 591
+AL F+ D +LG + D + ++ + + G NG G FPA +V+
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 76.9 bits (190), Expect = 1e-17
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIIS-QKDEHCWIGELNGLKGWFPAKFVEL 592
+ A A DF+ DDEL F++ D++ +++ + D++ + ELNG G+ P ++E+
Sbjct: 5 ASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 64
Query: 593 LDE 595
Sbjct: 65 KPH 67
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 75.7 bits (187), Expect = 3e-17
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKG-WFPAKFVELL 593
+ + KAL D++ +DEL F K+ +I + ++D W G+ G K WFP+ +VE +
Sbjct: 1 TFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 59
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 75.3 bits (186), Expect = 4e-17
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQ--KDEHCWIGELNGLKGWFPAKFVE 591
+ + + L + ++DEL FR+ ++I +IS+ + W GELNG +G FP F
Sbjct: 2 AMGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAV 61
Query: 592 LL 593
+
Sbjct: 62 QI 63
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 76.4 bits (188), Expect = 4e-17
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQ--KDEHCWIGELNGLKGWFPAKFVELL 593
S +AL FE + DE+ F D+I + + + G G GWFP +VE +
Sbjct: 3 SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKM 62
Query: 594 DERSKQYSLAGDDSVT 609
+ +++ ++
Sbjct: 63 PSSENEKAVSPKKALL 78
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 75.3 bits (186), Expect = 4e-17
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELN-GLKGWFPAKFVELL 593
++ R +AL D++ + DEL F+ D +T + ++DE W G L+ G G +PA +VE +
Sbjct: 1 AKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 75.3 bits (186), Expect = 4e-17
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVELLDERS 597
+AL DF +D+++L F+K D++ I + +E W E G +G P +VE
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHHH 63
Query: 598 KQ 599
Sbjct: 64 HH 65
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 75.0 bits (185), Expect = 7e-17
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKG-WFPAKFVEL 592
S + + KAL D++ +DEL F K+ +I + +++ W G+ G K WFP+ +VE
Sbjct: 2 SPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEE 61
Query: 593 LDE 595
+
Sbjct: 62 MVN 64
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 75.0 bits (185), Expect = 7e-17
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S AL + + +L F + + I + QKD W G + G FP+ +V+
Sbjct: 4 GSSGGEEYIALYPYSSVEPGDLTFTEGEEILVT-QKDGEWWTGSIGDRSGIFPSNYVKPK 62
Query: 594 DERSKQ 599
D
Sbjct: 63 DSGPSS 68
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 73.7 bits (182), Expect = 1e-16
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFVE 591
+A+ +E DDE+ D+IT+I D W GE +GLKG FP + +
Sbjct: 2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 74.4 bits (183), Expect = 1e-16
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNG-----LKGWFPAK 588
S S A+ + ++L +I I+ + W GEL KGWFPA
Sbjct: 3 SGSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPAS 62
Query: 589 FVELLDERSKQYS 601
V+LL S++ S
Sbjct: 63 HVKLLGPSSERAS 75
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 74.4 bits (183), Expect = 1e-16
Identities = 11/66 (16%), Positives = 26/66 (39%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDE 595
S +++ D E+ F + ++ +++ W L+GW P+ ++ L +
Sbjct: 6 SGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDEN 65
Query: 596 RSKQYS 601
S
Sbjct: 66 EQPDPS 71
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 73.8 bits (182), Expect = 1e-16
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL--KGWFPAKFVELLDE 595
A A +F E+ FRK + IT++ Q DE+ + G + G +G FP +V+++
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 73.7 bits (182), Expect = 1e-16
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVELLD 594
+RA AL DFE +D+EL + D++ I + + + E G P +FV +
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 59
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 73.9 bits (182), Expect = 2e-16
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 534 SRSRQRRAKALLDFERHDD-DELGFRKNDVITIISQKDEHCWI-GEL--NGLKGWFPAKF 589
S S ++ K + ++ L F + DV+T++ +++ W+ GE +GWFP+ +
Sbjct: 3 SGSSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSY 62
Query: 590 VELLDERS 597
+LL S
Sbjct: 63 TKLLSGPS 70
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 75.4 bits (185), Expect = 2e-16
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL---NGLKGWFPAKFVELLDERS 597
A L +F+ DDEL + ++I + D +I + G G P +V ++D
Sbjct: 6 AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMD 65
Query: 598 KQYSLAGDDSVTETITDLVRGTLCP 622
+ D E + ++ P
Sbjct: 66 PAKYASVDTYDREQVMKIIDEFKIP 90
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 73.6 bits (181), Expect = 3e-16
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIIS--QKDEHCWIGELNGLKGWFPAKFVELL 593
S AL + + L F + D+I ++ + G G G FPA V+
Sbjct: 6 SGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPA 65
Query: 594 DE 595
Sbjct: 66 AA 67
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 72.6 bits (179), Expect = 3e-16
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELN--GLKGWFPAKFVE 591
+ + R +A+ D+ D+DE+ FR D I + D+ G + G G PA ++E
Sbjct: 2 AMANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
Query: 592 LLD 594
++
Sbjct: 62 FVN 64
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 73.3 bits (180), Expect = 3e-16
Identities = 14/65 (21%), Positives = 33/65 (50%)
Query: 550 HDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQYSLAGDDSVT 609
E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD + + +
Sbjct: 3 MGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQ 62
Query: 610 ETITD 614
E+ +
Sbjct: 63 ESGDN 67
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 72.7 bits (179), Expect = 4e-16
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 534 SRSRQRRAKALLDFER-HDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFV 590
S S RR +A+L + + D DE+ F K D+ + ++ ++ +G V
Sbjct: 3 SGSSGRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 62
Query: 591 ELLDERS 597
E + S
Sbjct: 63 EEVSGPS 69
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 72.3 bits (178), Expect = 6e-16
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLDE 595
+RA AL DFE +D+EL + D++ I + + + E G P +FV +
Sbjct: 5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP 64
Query: 596 RSK 598
+
Sbjct: 65 ELE 67
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 72.3 bits (178), Expect = 6e-16
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDE 595
S + + + + DE+GF K + +I + E W G +GW PA +++ +
Sbjct: 6 SGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKD 65
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 72.4 bits (178), Expect = 7e-16
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 534 SRSRQRRAKALLDFERHD-------DDELGFRKNDVITIISQKDE-HCWIGELNGLKGWF 585
S S + A LD++ D L R DV+ + D+ + GEL G +G
Sbjct: 3 SGSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLV 62
Query: 586 PAKFVELL 593
PA ++ +
Sbjct: 63 PAHLLDHM 70
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 71.9 bits (177), Expect = 8e-16
Identities = 10/60 (16%), Positives = 29/60 (48%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQ 599
+ + ++++ ++ EL + +V+ +I + + W + +GW PA ++E +
Sbjct: 10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGPSS 69
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 71.1 bits (175), Expect = 1e-15
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVE 591
S S +A+ + ++DEL R+ D + ++ Q D+ ++G G FP +V
Sbjct: 3 SGSSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVA 62
Query: 592 LL 593
+
Sbjct: 63 PV 64
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 70.8 bits (174), Expect = 1e-15
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 551 DDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQ 599
E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD + +
Sbjct: 2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 50
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 71.2 bits (175), Expect = 1e-15
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL-NGLKGWFPAKFVELLDE 595
AL D+ + DEL + D+I + + +E W G + G +G+FPA V
Sbjct: 7 PTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETL 64
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 70.8 bits (174), Expect = 1e-15
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 534 SRSRQRRAKALLDFERHD-DDELGFRKNDVITIISQKDEHCW-IGEL--NGLKGWFPAKF 589
S + R KA+ D L F++ D+IT++ + W GE ++GWFP +
Sbjct: 3 LGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSY 62
Query: 590 VELLD 594
+LD
Sbjct: 63 TRVLD 67
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 70.3 bits (173), Expect = 2e-15
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVE 591
+AL DF +D+++L F+K D++ I + +E W E G +G P +VE
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 70.5 bits (173), Expect = 3e-15
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQ 599
A L + E+ +K D++T+++ ++ W E+N +G+ PA +V+ LD + +
Sbjct: 3 APPLPPYS-AGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 60
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 72.4 bits (177), Expect = 4e-15
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFVELLD 594
AKA DF D EL ++ D+I I+++K + W GE+ G GWFP+ +VE
Sbjct: 3 GTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDY 62
Query: 595 ERSKQYSLAGDDSVTETITDLVRGTL 620
+ G S L TL
Sbjct: 63 SEYLPETGGGSGSSMTYKLILNGKTL 88
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 68.8 bits (169), Expect = 9e-15
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 533 VSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGEL--NGLKGWFPAKF 589
++ ++R DF DEL + D + I+ K W + +L +G G PA+F
Sbjct: 1 MASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQF 60
Query: 590 VELLDERSKQ 599
+E + ++
Sbjct: 61 IEPVRDKKHT 70
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 69.1 bits (169), Expect = 1e-14
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 510 SHASLTPNYSPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQK 569
H S + E+ + A+ D+E D+EL R+ D + ++SQ
Sbjct: 5 HHHSSGVDLGTENLYFQSMG----TTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQD 60
Query: 570 DEHC-----WIGEL-NGLKGWFPAKFVE 591
W G+L +G G FP+ +V
Sbjct: 61 CAVSGDEGWWTGQLPSGRVGVFPSNYVA 88
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 69.1 bits (169), Expect = 1e-14
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHC----WIGELNG-LKGWFPAKFVELLD 594
A+A DF D+E+ FR D++ + ++ + + L+G G PA +V++L
Sbjct: 19 VARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILG 78
Query: 595 ERSKQ 599
+R +
Sbjct: 79 KRRGR 83
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 67.7 bits (166), Expect = 3e-14
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELL 593
+ AL D+E +D+L F K + I++ + W G G+ P+ +V +
Sbjct: 13 TGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
Query: 594 D 594
D
Sbjct: 73 D 73
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 67.3 bits (165), Expect = 3e-14
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL-----KGWFPAKFVEL 592
+ A ++ +D+L F K+ I + S +D + GE +G FP FV +
Sbjct: 9 KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAV 66
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 66.9 bits (164), Expect = 4e-14
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVE 591
S S AL + H +EL +K + I ++ + + G L G G FP+ +V
Sbjct: 3 SGSSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62
Query: 592 LLDERS 597
+ S
Sbjct: 63 PVSGPS 68
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 66.9 bits (164), Expect = 5e-14
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIG-ELNGLKGWFPAKFVEL 592
S A+ DF +L F+K +++ +I +K + WI + G +G P ++E
Sbjct: 6 KWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEP 65
Query: 593 LDE 595
E
Sbjct: 66 YSE 68
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 70.8 bits (173), Expect = 5e-14
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSK 598
+ +A+ D+E+ E+ DV+ ++ + + W ++ +GW PA F+E LD +
Sbjct: 12 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 71
Query: 599 Q 599
Sbjct: 72 T 72
Score = 69.2 bits (169), Expect = 1e-13
Identities = 11/79 (13%), Positives = 31/79 (39%)
Query: 521 ESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNG 580
E S + A+ + + DE+ + + + +I + + W+ +
Sbjct: 64 EPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDD 123
Query: 581 LKGWFPAKFVELLDERSKQ 599
+ G+FP+ +++ + Q
Sbjct: 124 VTGYFPSMYLQKSGQDVSQ 142
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 67.9 bits (166), Expect = 6e-14
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELN---GLKGWFPAKFVELLDERS 597
A L DF+ DEL + + I + + +I + G G P FV ++D +
Sbjct: 8 AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIAT 67
Query: 598 KQ 599
Sbjct: 68 GY 69
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 65.7 bits (161), Expect = 1e-13
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 531 ADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL-NGLKGWFPAKF 589
+S S ++ AL D+ + ++L RK D I+ + + W NG +G+ P+ +
Sbjct: 1 GSMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNY 60
Query: 590 VELLDE 595
V ++
Sbjct: 61 VTEAED 66
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 71.5 bits (174), Expect = 1e-13
Identities = 15/103 (14%), Positives = 28/103 (27%)
Query: 501 HFLTTDPRLSHASLTPNYSPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKN 560
+ + R +D L
Sbjct: 202 GGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVG 261
Query: 561 DVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQYSLA 603
+++ + W GE NG +G FP V LLD+++ + +
Sbjct: 262 ELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPEEDFS 304
Score = 55.7 bits (133), Expect = 2e-08
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 523 HQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGL 581
+S + + + +AL DF +D+++L F+K D++ I + +E W E G
Sbjct: 119 SRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGK 178
Query: 582 KGWFPAKFVELLDERSKQY 600
+G P +VE S
Sbjct: 179 RGMIPVPYVEKYRPASASV 197
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 64.9 bits (159), Expect = 2e-13
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGEL--NGLKGWFPAKFVELL 593
R DF DEL + D + I+ K W + +L +G G PA+F+E +
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 65.3 bits (160), Expect = 2e-13
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S + + L +FE + EL + + + ++ + G G+ P+ +E L
Sbjct: 3 SGSSGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPL 62
Query: 594 DERS 597
S
Sbjct: 63 SGPS 66
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 66.6 bits (162), Expect = 2e-13
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 18/110 (16%)
Query: 500 RHFLTTDPRLSHASLTPNYSPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRK 559
H PR SH + S + D+ + +A D+ D DEL +
Sbjct: 9 HHSSGLVPRGSHMATVNGAVEGSTTT---GRLDLPPGFMFKVQAQHDYTATDTDELQLKA 65
Query: 560 NDVITIIS-----QKDEHCWIG----------ELNGLKGWFPAKFVELLD 594
DV+ +I ++DE +G EL +G FP F E +
Sbjct: 66 GDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ 115
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 65.1 bits (159), Expect = 2e-13
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHC----WIGELNGLKGWFPAKFVELLD 594
A+ F+ + +EL N + I+ KD W+ E+NG KG+ P+ ++ +
Sbjct: 17 FAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.3 bits (179), Expect = 2e-13
Identities = 105/701 (14%), Positives = 214/701 (30%), Gaps = 205/701 (29%)
Query: 43 PQDIISK--LNQVPEDPN--SQPDYRFDEFGFRVEEEDGPEQNSNKLLSEPFIEDP-QHR 97
P+ I+SK ++ + + S F E+ + + F+E+ +
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTL------LSKQEE-----MVQKFVEEVLRIN 90
Query: 98 LQWVAYLEFNSSSANSPGKEESEALTWDNLGVISRTDKLRSMTRQGIPHSL-RPQLWLRL 156
+++ SP K E + I + D+L + + +++ R Q +L+L
Sbjct: 91 YKFLM----------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 157 SGALEKKALSKIKYQDIV---------KASSSDALAFAKQIEKDLLRTMPTNACFSTFSS 207
++AL +++ V K +A + + M F F
Sbjct: 141 -----RQALLELRPAKNVLIDGVLGSGKTW----VALDVCLSYKVQCKMD----FKIF-- 185
Query: 208 TGVPRLRRILRALAWLFPDIGGVVNALDFGSRGWWFESKRKVKRQKSILQNLIFGEEENG 267
W L+ + + +LQ L++ + N
Sbjct: 186 --------------W-----------LNLKNC-------NSPETVLEMLQKLLYQIDPNW 213
Query: 268 EDI--KTKNIHQTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVV 325
+ NI I + Q LR L+ S E LL
Sbjct: 214 TSRSDHSSNIKLR-IHSIQAELRRLLKS--KPYENCLL---------------------- 248
Query: 326 HFKILLRIWDLLFLDGSIVLF-HSCEPVLVTLENSAEIFNALSDIPGDIVDIDNLLEV-- 382
+LL + + + F SC +L+T ++ + LS + +D+
Sbjct: 249 ---VLLNVQNAKAWNA----FNLSC-KILLTTRF-KQVTDFLSAATTTHISLDHHSMTLT 299
Query: 383 ---GAEIF-----NALSDIPGDIVDIDNLLEVSFSVSTSISQSLIDSHRRRHLAFLMSDQ 434
+ D+P +++ N +S I++S+ D
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSI-----IAESIRD-------------- 339
Query: 435 GALIGNPALSNNLPKQQLNRLGRILR-SLFTLAFG----CFLGQTAVARQATPARPQILV 489
A +N ++L I+ SL L F + +V + +L
Sbjct: 340 -----GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILLS 393
Query: 490 DL-REATCQIGRHFLTTDPRLSHASLTPNYSPESHQSDHDAYADVSRSRQRRA---KALL 545
+ + + L SL ES S Y ++ + ++++
Sbjct: 394 LIWFDVIKSDVMVVVNK---LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 546 DFERHDDDELGFRKNDVITIISQKDE--HCWIG------ELNGLKGWFPAKFVEL--LDE 595
D H + F +D+ I D+ + IG E F F++ L++
Sbjct: 451 D---HYNIPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 596 --RSKQYSLAGDDSVTETITDLV--RGTLCPALKQILSCGLKRRALGEVCHPWLFIEEVA 651
R + S+ T+ L + +C + R + + F+ ++
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICD------NDPKYERLVNAILD---FLPKIE 556
Query: 652 TREVEKDFTSVYSRLLLCKTYRLDEDGKVLTPEELLYRCVQ 692
+ +T + L + ED + E ++ VQ
Sbjct: 557 ENLICSKYTDLLRIAL------MAEDEAIF---EEAHKQVQ 588
Score = 52.5 bits (125), Expect = 5e-07
Identities = 78/574 (13%), Positives = 145/574 (25%), Gaps = 202/574 (35%)
Query: 347 HSCEPVL-VTLENSAEIFNA--LSDIPGDIV---DIDNLLEVGAEIFNALSDIPGDIVDI 400
+ + +L V + + F+ + D+P I+ +ID+++ +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-----------KDAVSGT 64
Query: 401 DNLLEVSFSVSTSISQSLIDSHRRRHLAFLMSDQGALIGNPALSNNLPKQQLNRLGRILR 460
L S + Q ++ R + FLMS P++ + +Q +RL
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-- 122
Query: 461 SLFTLAFGCFLGQTAVARQATPARPQILVDLREATCQI--------------GRHFLTTD 506
Q + R Q + LR+A ++ G+ ++
Sbjct: 123 -----------NQVFAKYNVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-- 167
Query: 507 PRLSHASLTPNYSPESHQSDHDAYADVSRSRQRRA--KALLDFERHDDDELGFRKNDVIT 564
+ +Y + + ++ + L D R +
Sbjct: 168 -----LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 565 IISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQYSLAGDDSVTETITDLVRGTLCPAL 624
I + A+ LL + + L LV
Sbjct: 223 IKLRIH-------------SIQAELRRLLKSKPYENCL------------LV-------- 249
Query: 625 KQILSCGLKRRALGEVCHPWLFIEE--------VATREVE-KDFTSVYSRLLLCKTYRLD 675
L V + + TR + DF S + LD
Sbjct: 250 ------------LLNVQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATT----THISLD 292
Query: 676 EDGKVLTPEELLYRCVQAVNQSHDMAHVQMDVKFRSLICLGLNEQVLHLWLEVLCSCEPV 735
LTP+E+ ++ ++ L +V + P
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQD----------------LPREV--------LTTNPR 328
Query: 736 VLK--------WYHPWSFISSPGWVQVKCD--LRVLSQFPFNLSPDWELPPKKGQSQPLK 785
L W W V CD ++ L P
Sbjct: 329 RLSIIAESIRDGLATWDN-----WKHVNCDKLTTIIESSLNVLEPA-------------- 369
Query: 786 DGVATREVEKDFTSVYSRLLLCKTYRLDEDGKVLTPEELL--------YRCVQA-VNQSH 836
++ ++ RL + + P LL V VN+ H
Sbjct: 370 ----------EYRKMFDRLSV-----FPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 837 DMAHVQMDVK---------FRSLICLGLNEQVLH 861
+ V+ K + L NE LH
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 65.0 bits (159), Expect = 2e-13
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 534 SRSRQRRAKALLDFE-RHDDDELGFRKNDVITIIS-QKDEHCWIGEL-NGLKGWFPAKFV 590
S +A+ + DF ++EL + ++IT+ + G+ G +G P +V
Sbjct: 5 SSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYV 64
Query: 591 ELLDERSK 598
E+L K
Sbjct: 65 EILPNDGK 72
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 71.2 bits (173), Expect = 3e-13
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
R RA+AL DF + EL F+ DVI ++S+ ++ G + G G FP FV++L
Sbjct: 170 DRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 229
Query: 594 DERSKQ 599
+ ++
Sbjct: 230 KDFPEE 235
Score = 35.7 bits (81), Expect = 0.057
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 10/90 (11%)
Query: 518 YSPESHQSDHDAYADVSRSRQRRAKALLDFERH------DDDELGFRKNDVITIISQKDE 571
Y ++ + D + S K LL+ R + D++ ++S +D
Sbjct: 246 YYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDV 305
Query: 572 HCWIGELNGL---KGWFPAKF-VELLDERS 597
+ + GL K FP K + D
Sbjct: 306 ALMVRQARGLPSQKRLFPWKLHITQKDNYR 335
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 64.2 bits (157), Expect = 3e-13
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S + K L DF + +EL K++V+ ++ + + +G G+ P +
Sbjct: 3 SGSSGKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEA 62
Query: 594 DERS 597
S
Sbjct: 63 SGPS 66
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 64.8 bits (158), Expect = 5e-13
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHC--WIGE-LNGLKGWFPAKFV 590
+ L F ++EL F K + + +I + + W + G G P +V
Sbjct: 13 GSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 72
Query: 591 ELLDERSKQYSLAGDDS 607
+L + + S
Sbjct: 73 VVLSDGPALHPAHSGPS 89
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 63.9 bits (156), Expect = 5e-13
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 534 SRSRQRRAKALLDFE-RHDDDELGFRKNDVITIISQKDEHC-----WIGEL-NGLKGWFP 586
A+AL DF + + E+ +K D++ I+S+KD W NG G+ P
Sbjct: 3 HHHHHHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIP 62
Query: 587 AKFVELL 593
++E++
Sbjct: 63 YNYIEII 69
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 63.3 bits (154), Expect = 5e-13
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDE 595
A + +DEL +T++ + W G NG GWFP+ +V +
Sbjct: 4 AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEVD 58
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 63.4 bits (155), Expect = 6e-13
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVE 591
A+ DF+ + +L + I+ + D H W G +G+ P+ +V
Sbjct: 2 SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVT 56
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 69.3 bits (168), Expect = 8e-13
Identities = 17/86 (19%), Positives = 31/86 (36%)
Query: 516 PNYSPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI 575
P S + + + +A +D L D++ + W
Sbjct: 217 PAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWE 276
Query: 576 GELNGLKGWFPAKFVELLDERSKQYS 601
GE+NG KG FP V++ D ++ +
Sbjct: 277 GEVNGRKGLFPFTHVKIFDPQNPDEN 302
Score = 54.2 bits (129), Expect = 6e-08
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Query: 516 PNYSPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI 575
P Y S + + L DF +D ++L F+K +++ II + +E W
Sbjct: 103 PRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWS 162
Query: 576 GEL-NGLKGWFPAKFVELLDERSKQYSLAGDDSVTETITDLVRGTLCPA 623
+G G P +VE L S +S + I + P
Sbjct: 163 ARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQ 211
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 63.2 bits (154), Expect = 1e-12
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 533 VSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFV 590
+ S AL D+ +L F K + I+ W G G+ P+ +V
Sbjct: 1 MRGSGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYV 60
Query: 591 ELLDERSKQYSLAG 604
+D + L
Sbjct: 61 APVDSIQGEQKLIS 74
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 63.3 bits (154), Expect = 1e-12
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 536 SRQRRAKALLDFE-RHDDDELGFRKNDVITIISQKDEHC-----WIGEL-NGLKGWFPAK 588
S+ A+AL DF + + E+ +K D++ I+S+KD W NG G+ P
Sbjct: 12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71
Query: 589 FVELLDERSKQYSLAGDDS 607
++E++ R K + +
Sbjct: 72 YIEIIKRRKKIEHVDDETR 90
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 62.8 bits (153), Expect = 1e-12
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLDERS 597
+ + F DE+ ++ DV+ ++ Q+++ GE +G GWFP F + S
Sbjct: 19 QVEITKAFFAKQADEVTLQQADVVLVL-QQEDGWLYGERLRDGETGWFPEDFARFISGPS 77
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 62.8 bits (153), Expect = 2e-12
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 536 SRQRRAKALLDFE-RHDDDELGFRKNDVITIISQKDEHC-----WIGEL-NGLKGWFPAK 588
S+ A+AL DF + + E+ +K D++ I+S+KD W NG G+ P
Sbjct: 12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71
Query: 589 FVELLDER 596
++E++ R
Sbjct: 72 YIEIIKRR 79
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 61.8 bits (151), Expect = 2e-12
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI---GELNGLKGWFPAKFVEL 592
K L + + DDDE+ D I+++++ W + G G P ++ +
Sbjct: 3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 63.4 bits (154), Expect = 2e-12
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 13/85 (15%)
Query: 519 SPESHQSDHDAYADVSRSRQRRAKALLDFE--------RHDDDELGFRKNDVITIISQKD 570
S S +D R AL D++ ++EL F++ +I + KD
Sbjct: 2 SSGSSGTD----PGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKD 57
Query: 571 EHCW-IGELNGLKGWFPAKFVELLD 594
+ GE G P V +
Sbjct: 58 ADGFYRGETCARLGLIPCNMVSEIQ 82
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 62.3 bits (152), Expect = 2e-12
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHC--WIGE-LNGLKGWFPAKFVELLDE 595
+ L F ++EL F K + + +I + + W + G G P +V +L +
Sbjct: 7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 66
Query: 596 RS 597
Sbjct: 67 GP 68
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 61.9 bits (151), Expect = 2e-12
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCW--IGELNGLKGWFPAKFVE 591
S S A+ FE + + + + ++++ + W + G +G+ P ++
Sbjct: 3 SGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLR 62
Query: 592 LLDERS 597
+ S
Sbjct: 63 VTSGPS 68
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 61.8 bits (151), Expect = 3e-12
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFVELLD 594
AL DF D+ L K + + ++ W + +GW P+ ++ ++
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 62.9 bits (153), Expect = 3e-12
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 532 DVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHC----WIG--ELNGLKGWF 585
D+ + + + + +DDEL D I + + G G G
Sbjct: 10 DIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLL 69
Query: 586 PAKFVELLDE 595
P ++ DE
Sbjct: 70 PENYITKADE 79
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 61.6 bits (150), Expect = 3e-12
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCW--------IGELNGLKGWFPAKF 589
+ AL D++ E+ +K D++T+++ ++ W G+ +G+ PA +
Sbjct: 1 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAY 60
Query: 590 VELLD 594
V+ LD
Sbjct: 61 VKKLD 65
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 62.0 bits (151), Expect = 3e-12
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 540 RAKALLDFERHDDD--ELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVELLDER 596
+AKAL ++ DDD E+ F +N+++ + + W NG G P+ +V+L+D
Sbjct: 7 KAKALYPYDADDDDAYEISFEQNEILQVS-DIEGRWWKARRANGETGIIPSNYVQLIDGP 65
Query: 597 SKQY 600
+ +
Sbjct: 66 EEMH 69
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 62.0 bits (151), Expect = 3e-12
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLDERSKQ 599
+AL D+E +D+L F K + I++ + W G G+ P+ ++ +D +
Sbjct: 9 EALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLDYK 68
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 61.2 bits (149), Expect = 5e-12
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 531 ADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GE-LNGLKGWFPAK 588
+ R+ K + ++ DEL +++V+ +I D W+ G G+ P K
Sbjct: 6 SGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEK 65
Query: 589 FVELLDERS 597
+++
Sbjct: 66 YLQFPTSSG 74
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 61.3 bits (149), Expect = 5e-12
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL---------NGLKGW 584
S S + AL D++ ++L FR D + ++ E W+ L+G+
Sbjct: 3 SGSSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGY 62
Query: 585 FPAKFVE 591
P+ +V
Sbjct: 63 IPSNYVA 69
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 61.1 bits (149), Expect = 6e-12
Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVE 591
++ +A+ F +DEL +D + + Q +++ + G +G FPA +
Sbjct: 2 GEEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 61
Query: 592 LLDERSKQYS 601
+ + + +
Sbjct: 62 EVTKEPEHMA 71
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 60.4 bits (147), Expect = 8e-12
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 537 RQRRAKALLDFE-RHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVELL 593
+ + +A DF EL +K D++ I + + +L +GW P ++
Sbjct: 1 KDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPY 60
Query: 594 DERSKQ 599
+
Sbjct: 61 KDTRNT 66
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 60.9 bits (148), Expect = 8e-12
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 533 VSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVE 591
+ + AL D++ +D EL R+N+ ++ + H W + NG +G+ P+ ++
Sbjct: 14 LWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLV 73
Query: 592 LLDERSKQ 599
+ +
Sbjct: 74 EKSPNNLE 81
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 62.0 bits (150), Expect = 8e-12
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 507 PRLSHASLTPNYSPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITII 566
P S + S + S ++R A+ +F+ +L + DV+ I
Sbjct: 28 PSNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRIQ 87
Query: 567 SQKDEHCWIGEL---NGLKGWFPAKFVELLD 594
+ + G L L+G FP F+ + +
Sbjct: 88 -ETCGDWYRGYLIKHKMLQGIFPKSFIHIKE 117
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 66.4 bits (161), Expect = 9e-12
Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 2/126 (1%)
Query: 499 GRHFLTTDPRLSHASLTPNYSPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFR 558
+ +L ++ A + F + +L F
Sbjct: 109 AGVKIANQSFPDIPALLNHFKMRVLTEASLLAAY-KKPIIEVVVGTFKFTGERETDLPFE 167
Query: 559 KNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVELLDERSKQYSLAGDDSVTETITDLVR 617
+ + + I+S+ ++ W G G PA +V++ E + G + +
Sbjct: 168 QGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGA 227
Query: 618 GTLCPA 623
A
Sbjct: 228 ERFSSA 233
Score = 65.6 bits (159), Expect = 1e-11
Identities = 10/107 (9%), Positives = 29/107 (27%)
Query: 489 VDLREATCQIGRHFLTTDPRLSHASLTPNYSPESHQSDHDAYADVSRSRQRRAKALLDFE 548
V ++ + + + + S + + +
Sbjct: 200 VQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPN 259
Query: 549 RHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDE 595
+D +L +K + + + + EL+G G P ++
Sbjct: 260 AYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAV 306
Score = 32.1 bits (72), Expect = 0.73
Identities = 7/50 (14%), Positives = 13/50 (26%)
Query: 537 RQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFP 586
R + DE + +I K++ + FP
Sbjct: 70 RDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFP 119
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 59.9 bits (146), Expect = 9e-12
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 540 RAKALLDFE-RHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVE 591
+A DF EL +K DVI I ++ +G+L +GW P +++
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 61.1 bits (148), Expect = 1e-11
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 534 SRSRQRRAKALLDFE------RHDDDELGFRKNDVITIISQKDEHCW-IGE-LNGLKGWF 585
+ A + + + EL + + DE + GE L+G +G
Sbjct: 13 YSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLV 72
Query: 586 PAKFVELLDERSKQ 599
P+ FV+ + + +
Sbjct: 73 PSNFVDFVQDNESR 86
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 63.7 bits (154), Expect = 1e-11
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 516 PNYSPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI 575
N+ ++ A + F + +L F + + + I+S+ ++ W
Sbjct: 96 LNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWE 155
Query: 576 GE-LNGLKGWFPAKFVEL 592
G G PA +V++
Sbjct: 156 ARNALGTTGLVPANYVQI 173
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 60.0 bits (146), Expect = 1e-11
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 529 AYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQK-DEHCWIGEL-NGLKGWFP 586
+ S A +F + +L F K DV+TI++ D + + + G +G P
Sbjct: 2 SAIQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIP 61
Query: 587 AKFVELLD 594
A +V+ +
Sbjct: 62 ANYVQKRE 69
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 60.1 bits (146), Expect = 1e-11
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 519 SPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE- 577
+PE ++ + AL D++ +D EL R ++ ++ + H W +
Sbjct: 7 TPEDNRRSFQE------PEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD 60
Query: 578 LNGLKGWFPAKFVE 591
NG +G+ P+ ++
Sbjct: 61 KNGHEGYAPSSYLV 74
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 66.7 bits (161), Expect = 2e-11
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 511 HASLTPNYSPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKD 570
S P S +++ + D + + R +AL D+E + DEL F+ D +T + +D
Sbjct: 401 DESNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDED 460
Query: 571 EHCW-IGEL-NGLKGWFPAKFVELL 593
E W G L NG G +PA +VE +
Sbjct: 461 EQGWCKGRLDNGQVGLYPANYVEAI 485
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 59.7 bits (145), Expect = 2e-11
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELN-----GLKGWFPAK 588
+ L DF+ D+EL FR DV + ++++ W L+ +G+ P
Sbjct: 6 QAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHN 65
Query: 589 FVE 591
++
Sbjct: 66 YLA 68
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 60.1 bits (146), Expect = 2e-11
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 519 SPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL 578
P SH S+ + S AL D+E ++L F+K D + ++ ++ W
Sbjct: 7 GPNSHNSNTPGIREAG-SEDIIVVALYDYEAIHHEDLSFQKGDQMVVL-EESGEWWKARS 64
Query: 579 --NGLKGWFPAKFVELLD 594
+G+ P+ +V +D
Sbjct: 65 LATRKEGYIPSNYVARVD 82
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 59.3 bits (144), Expect = 2e-11
Identities = 9/62 (14%), Positives = 24/62 (38%)
Query: 533 VSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
+ + DF+ + EL ++ DV+ ++ + + + G +G+ P +
Sbjct: 3 LGSGALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYNILTP 62
Query: 593 LD 594
Sbjct: 63 YP 64
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 58.7 bits (143), Expect = 3e-11
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELLDE 595
++ +A+ F +DEL +D + + Q +++ + G +G FPA + + +
Sbjct: 3 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 62
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding
domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14,
nesca PLAT; HET: GTP; 3.20A {Mus musculus}
Length = 384
Score = 65.1 bits (157), Expect = 3e-11
Identities = 37/197 (18%), Positives = 79/197 (40%), Gaps = 8/197 (4%)
Query: 564 TIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQYSLAGDDSVTETITDLVRGTLCPA 623
++I+Q + G L + VE + + + G+ ++T + + +LC
Sbjct: 35 SVIAQTNWKFVEGLLKECRNKTKRMLVEKMGREAVELG-HGEVNITGVEENTLIASLCDL 93
Query: 624 LKQILSCGLKRRALGEVCHPWLFIEEVATREVEKDFTSVYSR--LLLCKTYRLDEDGKVL 681
L++I S GL+ + W + K + S +LL R + V+
Sbjct: 94 LERIWSHGLQVKQGK--SALWSHLLHYQENRQRKLTSGSLSTSGILLDSERRKSDASAVM 151
Query: 682 TPEELLYRCVQAVNQSHDMAHVQMDV-KFRSLICLGLNEQVLHLWLEVLCSCEPVVLKWY 740
+P L +Q + ++ ++ DV K R+ + L + +++L L+ L S + K Y
Sbjct: 152 SP--LRISLIQDMRHIQNIGEIKTDVGKARAWVRLSMEKKLLSRHLKQLLSDHELTKKLY 209
Query: 741 HPWSFISSPGWVQVKCD 757
++F+ +
Sbjct: 210 KRYAFLRCDDEKEQFLY 226
Score = 45.1 bits (105), Expect = 7e-05
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 802 SRLLLCKTYRLDEDGKVLTPEELLYRCVQAVNQSHDMAHVQMDV-KFRSLICLGLNEQVL 860
S +LL R + V++P L +Q + ++ ++ DV K R+ + L + +++L
Sbjct: 134 SGILLDSERRKSDASAVMSP--LRISLIQDMRHIQNIGEIKTDVGKARAWVRLSMEKKLL 191
Query: 861 HLWLEVLCSCEPVVLKWYHPWSFISSPGWVQVKCD 895
L+ L S + K Y ++F+ +
Sbjct: 192 SRHLKQLLSDHELTKKLYKRYAFLRCDDEKEQFLY 226
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 58.2 bits (141), Expect = 4e-11
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 538 QRRAKALLDFE-RHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVELL 593
+RR +A+L + D DE+ F K D+ + ++ ++ +G VE +
Sbjct: 5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 62.0 bits (149), Expect = 6e-11
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 15/105 (14%)
Query: 504 TTDPRLSHASLTPNYSPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVI 563
++ P + + + D+ + +A D+ D DEL + DV+
Sbjct: 108 SSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVV 167
Query: 564 TIIS-----QKDEHCWIG----------ELNGLKGWFPAKFVELL 593
+I ++DE +G +L +G FP F E +
Sbjct: 168 LVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV 212
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 58.6 bits (142), Expect = 1e-10
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 512 ASLTPNYSPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDE 571
S + + S +Y AL D+E ++L F+K + II+ +
Sbjct: 1 GSSGSSGASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEG 60
Query: 572 HCWIGE--LNGLKGWFPAKFVELLD 594
W G G+ P+ +V D
Sbjct: 61 DWWEARSIATGKSGYIPSNYVVPAD 85
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 56.9 bits (138), Expect = 1e-10
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 535 RSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVEL 592
+ AL ++ D+L F+K + + ++ + W + L +G+ P+ +V
Sbjct: 4 EEQGDIVVALYPYDGIHPDDLSFKKGEKMKVLE-EHGEWWKAKSLLTKKEGFIPSNYVAK 62
Query: 593 LD 594
L+
Sbjct: 63 LN 64
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 60.5 bits (146), Expect = 2e-10
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 499 GRHFLTTDPRLSHASLTPNYSPESHQSDH---DAYADVSRSRQRRAKALLDFERHDDDEL 555
G++FL S L + S + + + +AL DF+ +D EL
Sbjct: 116 GKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGEL 175
Query: 556 GFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDE 595
GFR+ D I ++ D + W G +G G FP +V ++
Sbjct: 176 GFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 215
Score = 59.7 bits (144), Expect = 5e-10
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFVELLDE 595
A A DF+ DDEL F++ D++ +++++ + W ELNG G+ P ++E+
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH 58
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 62.3 bits (151), Expect = 4e-10
Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 23/179 (12%)
Query: 511 HASLTPNYS-PESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQK 569
S + +YS P +S A+AL D DD ELGF+ DVI ++
Sbjct: 2 AMSSSHHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDAT 61
Query: 570 DEHCWIGELNGLKGWFPAKFVELLDERSKQYSLAGDDSVTETITDLVRGTLCPALKQILS 629
+ W G + +GWFPA FV L + + + D +
Sbjct: 62 NREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKDQ---- 117
Query: 630 CGLKRRALGEVCHPWLFIEEVATREVEKDFTSVYSRLLLCKTY--RLDEDGKVLTPEEL 686
R V + E ++T E+D+ + +C+ Y + + + + E+L
Sbjct: 118 ---MRT---NVIN-----EILST---ERDY--IKHLRDICEGYVRQCRKRADMFSEEQL 160
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 55.5 bits (134), Expect = 4e-10
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELN 579
S + + AL D++ E+ +K D++T+++ ++ W E+N
Sbjct: 17 SGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN 62
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 59.5 bits (143), Expect = 6e-10
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 499 GRHFLTTDPRLSHASLTPNYSPESHQSDHDAYADVSR----SRQRRAKALLDFERHDDDE 554
+ F + L + + + + +AL DF +D+++
Sbjct: 93 DQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEED 152
Query: 555 LGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVELLDERSKQYSL 602
L F+K D++ I + +E W E G +G P +VE S S
Sbjct: 153 LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSA 201
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 55.8 bits (134), Expect = 9e-10
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQ---KDEHCWIGELNG--------LKGWFPAK 588
A AL D+ D L + V+ + S+ + W G + G G+FP+
Sbjct: 24 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS 83
Query: 589 FVELLDERSKQ 599
V
Sbjct: 84 IVREDQTLKPG 94
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 55.1 bits (133), Expect = 1e-09
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI---GELNGLKGWFPAKFVE 591
+ + R EL FRK DV+TI+ + W +G +G A +
Sbjct: 19 QCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALR 73
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 53.8 bits (129), Expect = 3e-09
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 17/76 (22%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITII---------SQKDEHC------WIG--EL 578
+ +AL F R ++L DV+ + ++ E C G E
Sbjct: 9 PEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNER 68
Query: 579 NGLKGWFPAKFVELLD 594
+G FP +VE L
Sbjct: 69 TRQRGDFPGTYVEFLG 84
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 52.6 bits (127), Expect = 3e-09
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDE 595
++ AK+ DF + EL K+DV+ I+ + + + +G G+ P ++++
Sbjct: 1 KKYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRT 58
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 53.3 bits (128), Expect = 4e-09
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 511 HASLTPNYSP---ESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIIS 567
H P P + ++ + + A D+ D EL +KN+ + ++
Sbjct: 1 HMKERPPPVPNPDYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLD 60
Query: 568 QKDEHCWIGELNGLKGWFPAKFVE 591
+ G+ P+ +VE
Sbjct: 61 DSKTWWRVRNAANRTGYVPSNYVE 84
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 52.8 bits (127), Expect = 5e-09
Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL----NGLKGWFPAKFVELLDERS 597
++ D+E D++ GF++ + ++ + W ++ KGW P+ ++E +
Sbjct: 14 VSIADYEG-DEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSGP 72
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 52.3 bits (126), Expect = 5e-09
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVE 591
S + AL +E D +LGF K + + I+ + W + G +G+ P FV
Sbjct: 2 SPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILE-QSGEWWKAQSLTTGQEGFIPFNFVA 60
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 52.8 bits (127), Expect = 7e-09
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVELLD 594
AL D+ D+L F+K D + ++ + E W +G+ P+ +V +D
Sbjct: 7 VALYDYVSWSPDDLSFQKGDQMVVLEESGEW-WKARSLATRKEGYIPSNYVARVD 60
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 51.9 bits (125), Expect = 9e-09
Identities = 10/61 (16%), Positives = 25/61 (40%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
+ + + A D+ + EL +KN+ + ++ + G+ P+ +VE
Sbjct: 3 TMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERK 62
Query: 594 D 594
+
Sbjct: 63 N 63
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding,
structural genomics, NPPSFA; 2.00A {Mus musculus} PDB:
2dwg_A 2cxf_A 2cxl_A
Length = 180
Score = 54.7 bits (131), Expect = 1e-08
Identities = 25/178 (14%), Positives = 59/178 (33%), Gaps = 38/178 (21%)
Query: 599 QYSLAGDDSVTETITDLVRGTLCPALKQILSCGLKRRA--LGEVCHPWLFIEEVATREVE 656
+ +L ++ L + ++ L GLK + LG+ W +E V
Sbjct: 28 ESALNLGRTLDSDYAPLQQ--FFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELV------ 79
Query: 657 KDFTSVYSRLLLCKTYRLDEDGKVLTPEELLYRCVQAVNQSHDMAHVQMDV-KFRSLICL 715
E+L+ + D+ ++ V + R+ + L
Sbjct: 80 ---------------------------EKLVPEAAEITASVKDLPGLKTPVGRGRAWLRL 112
Query: 716 GLNEQVLHLWLEVLCSCEPVVLKWYHPWSFISSPGWVQVKCDLRVLSQFPFNLSPDWE 773
L ++ L +++ L + + ++ ++Y + + + L L+ N E
Sbjct: 113 ALMQKKLSEYMKALINKKELLSEFYEVNALMMEEEGAIIAGLLVGLNVIDANFCMKGE 170
Score = 47.7 bits (113), Expect = 2e-06
Identities = 12/83 (14%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 830 QAVNQSHDMAHVQMDV-KFRSLICLGLNEQVLHLWLEVLCSCEPVVLKWYHPWSFISSPG 888
+ D+ ++ V + R+ + L L ++ L +++ L + + ++ ++Y + +
Sbjct: 88 EITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEVNALMMEEE 147
Query: 889 WVQVKCDLRVLSQFPFNLSPDWE 911
+ L L+ N E
Sbjct: 148 GAIIAGLLVGLNVIDANFCMKGE 170
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 1e-08
Identities = 103/646 (15%), Positives = 189/646 (29%), Gaps = 222/646 (34%)
Query: 27 ITIPGGPF--SALTP-SMWP-----QDIISKLNQVP-------EDPNSQPDY--RFDEFG 69
+T+ G L P + + Q+ +K+ P ++P + + +F G
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF--LG 66
Query: 70 FRVEEEDGPEQNS-NKLLSEPFIEDPQHRLQWVAYLEFNSSSANSPGKEESEALTWDNLG 128
+ + + +++L+ + EF E+ L +++
Sbjct: 67 YVSSLVEPSKVGQFDQVLN-------------LCLTEF-----------ENCYLEGNDI- 101
Query: 129 VISRTDKLRSMTRQGIPHSLRPQLWLRLSGALEK-KALSKIKYQDIVKASSSDALAFAKQ 187
H+L +L L K K L K A F K+
Sbjct: 102 -----------------HALAAKLLQENDTTLVKTKELIKNYIT----ARIMAKRPFDKK 140
Query: 188 IEKDLLRTMPTNA--CFSTFSSTGVPRLRRILRALAWLFPDIGGVVNALDFGSRGWWFES 245
L R + + F GG G+ +FE
Sbjct: 141 SNSALFRAVGEGNAQLVAIF----------------------GG------QGNTDDYFEE 172
Query: 246 KRKV-KRQKSILQNLIFG-----EEENGEDIKTKNIHQTGIQADQKVLRSLVASGLPQLE 299
R + + ++ +LI E + + + G+ + L + S P +
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LEWLEN--PSNTPDKD 229
Query: 300 VSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDL----LF--LDGSIVLFHSCEPVL 353
LL I LI + + H+ + ++ L L G+ L
Sbjct: 230 Y-LLSIPISCPLIGV-------IQLAHYVVTAKLLGFTPGELRSYLKGATG----HSQGL 277
Query: 354 VT-----LENSAEIFNALSDIPGDIVDIDNLLEVGA---EIFNALSDIPGDIVD-IDN-- 402
VT +S E F + + L +G E + S P + D ++N
Sbjct: 278 VTAVAIAETDSWESFFVSVR---KAITV--LFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 403 -----LLEVSFSVSTSISQSLIDSHRRRHLAFLMSDQGALIGNPALSN---NL----PKQ 450
+L +S +++ Q ++ HL + + I +L N NL P Q
Sbjct: 333 GVPSPMLSIS-NLTQEQVQDYVN-KTNSHLP---AGKQVEI---SLVNGAKNLVVSGPPQ 384
Query: 451 QLNRLGRILRSL------------FT---LAFG-CFLGQTAVARQA-------TPARPQI 487
L L LR F+ L F FL VA + PA I
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL---PVA--SPFHSHLLVPASDLI 439
Query: 488 LVDLREATCQIGRH------FLT---TDPRLSHASLTPN----------------YSPES 522
DL + + T +D R+ S++ +
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 523 HQSDHDAYAD------VSRSRQRRAKALL---DFERHDDDELGFRK 559
H D R++ ++ + + DD+ GF++
Sbjct: 500 HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 44.3 bits (104), Expect = 2e-04
Identities = 94/627 (14%), Positives = 170/627 (27%), Gaps = 219/627 (34%)
Query: 404 LEVSFSVSTSI----SQSLIDSHRRRHLAFLMSDQGALIGNPALSNNLPKQQLNRLGRIL 459
LE V T+ SQ + + L ++ P +G+
Sbjct: 16 LEHVLLVPTASFFIASQ-----LQEQFNKILPEPTEGFAA-----DDEPTTPAELVGK-- 63
Query: 460 RSLFTLAFGCFLGQTA--VARQATPARPQILVDLREATCQIGRHFL-TTDPRLSH---AS 513
FLG + V Q+ L + +L D H A
Sbjct: 64 ----------FLGYVSSLVEPSKVGQFDQV---LNLCLTEFENCYLEGNDI---HALAAK 107
Query: 514 LTPNYSPESHQSDH------DAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIIS 567
L ++ A R +++ + L F + + I
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNAQL-----VAIFG 161
Query: 568 -QKDEHCWIGELNGLKGWFPAKFVELLDERSKQY-SLAGD--DSVTETITDLVRGTLCPA 623
Q G + +F EL + + Y L GD ET+++L+R T
Sbjct: 162 GQ-------GNTD---DYFE----ELR-DLYQTYHVLVGDLIKFSAETLSELIRTT--LD 204
Query: 624 LKQILSCGLKRRALGEVCHPWLFIEEVATREVEKDFTSV--------------YSRLLLC 669
+++ + GL WL E + + S+ Y ++
Sbjct: 205 AEKVFTQGLNILE-------WL--ENPSNTPDKDYLLSIPISCPLIGVIQLAHY--VVTA 253
Query: 670 KTYRLDEDGKVLTPEELLYR------CVQAV-----------NQS-HDMAHVQMDVKF-- 709
K G TP EL Q + +S + V F
Sbjct: 254 KLL-----G--FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 710 --RS----------------------------LICLGLNEQVLHLWLEVLCSCEPVVLKW 739
R L L ++ + ++ S P
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA---- 362
Query: 740 YHPWSFIS---SPGWVQVKCDLRVLSQFPFNL-SPDWEL-----PPKKGQSQ-PLKDGVA 789
IS V+S P +L + L P QS+ P +
Sbjct: 363 -GKQVEISLVNGA-------KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE--- 411
Query: 790 TREVEKDFTSVY--------SRLLLCKTYRLDEDGKVLTPEELLYRCVQ---AVNQSHDM 838
R+++ F++ + S LL+ + +++D L + + V + D
Sbjct: 412 -RKLK--FSNRFLPVASPFHSHLLVPASDLINKD---LVKNNVSFNAKDIQIPVYDTFDG 465
Query: 839 AHVQMDVKFRSLICLGLNEQVLHL---WLEVLCSCEPVVLKWYHPWSFISSPGWVQVKCD 895
+ ++ I + + ++ L W E + H F PG
Sbjct: 466 SDLR---VLSGSISERIVDCIIRLPVKW-ETTTQFKAT-----HILDF--GPGGASGLGV 514
Query: 896 L----------RVLSQFPFNLSPDWEL 912
L RV+ +++PD +
Sbjct: 515 LTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 33.9 bits (77), Expect = 0.37
Identities = 55/310 (17%), Positives = 97/310 (31%), Gaps = 98/310 (31%)
Query: 381 EVGAEIFNA----LSDIPG-DIVDI--DNLLEVSFSVSTSISQSLIDSHRRRHLAFLMSD 433
+ +++N D G I+DI +N + ++ + + R + A M
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI----RENYSA--MIF 1693
Query: 434 QGALIGNPALSNNLPKQQLNRLGRILRSLFTLAFGCF------LGQTAVARQATPARPQI 487
+ + G ++ + S F L T Q PA +
Sbjct: 1694 ETIVDGKLKT-----EKIFKEINEHSTSY------TFRSEKGLLSATQFT-Q--PA---L 1736
Query: 488 LV-------DLREATCQIGRHFLTTDPRLS-HASL--TPNYSPESHQSD----HDAYADV 533
+ DL+ + + D + H SL Y+ + +D +V
Sbjct: 1737 TLMEKAAFEDLKS------KGLIPADATFAGH-SLGE---YAALASLADVMSIESL-VEV 1785
Query: 534 SRSRQRRAKALLDF-ERHDDDELG--------FRKNDVITIISQKDEHCWIGELNGLKGW 584
R + R DELG V SQ+ + + GW
Sbjct: 1786 VF---YRGMTMQVAVPR---DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 585 FPAKFVEL--LDERSKQYSLAGDDSVTETITDLVRG--TLCPALKQILSCGLKRRALGEV 640
VE+ + ++QY AGD +R T+ L I L++ + E+
Sbjct: 1840 L----VEIVNYNVENQQYVAAGD----------LRALDTVTNVLNFI---KLQKIDIIEL 1882
Query: 641 CHPWLFIEEV 650
L +EEV
Sbjct: 1883 QKS-LSLEEV 1891
Score = 33.1 bits (75), Expect = 0.60
Identities = 48/288 (16%), Positives = 81/288 (28%), Gaps = 99/288 (34%)
Query: 190 KDLLRTMPT------NACFSTFSSTGVPRLRRILR----ALAWLFPDIGGV-----VNAL 234
DL +T A + G + I+ L F G +A+
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGF-SILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 235 DFGSRGWWFESKRKV-KRQKSILQNLIFGEEENGEDIKTKNIHQTGIQ--------ADQK 285
F + K+ K + F E G T+ T Q A +
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTF-RSEKGLLSATQF---T--QPALTLMEKAAFE 1745
Query: 286 VLRSLVASGLPQLEVSLLQHDIELSL-----ITLHWFLTLFASVVHFKILLRIWDLLFL- 339
L+S GL + + H SL L A V+ + L+ ++F
Sbjct: 1746 DLKS---KGLIPADATFAGH----SLGEYAA------LASLADVMSIESLVE---VVFYR 1789
Query: 340 ------------------------DGSIVLFHSCEPVLVTLENSA-------EI--FNAL 366
G + S E + +E EI +N
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 367 SD---IPGDIVDIDNLLEVGAEIFNALSDIPGDIVDIDNL-LEVSFSV 410
+ GD+ +D + + N + + ID + L+ S S+
Sbjct: 1850 NQQYVAAGDLRALDTV----TNVLNFIK-----LQKIDIIELQKSLSL 1888
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 51.1 bits (123), Expect = 2e-08
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVELLD 594
+ + A D+ D EL +KN+ + ++ + W G+ P+ +VE
Sbjct: 2 TEEVIVIAKWDYTAQQDQELDIKKNERLWLLD-DSKTWWRVRNAANRTGYVPSNYVERKL 60
Query: 595 ERSKQY 600
E +
Sbjct: 61 EHHHHH 66
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 50.9 bits (122), Expect = 3e-08
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVELLD 594
L D+ D FR+ + + +IS + W G + + P V +
Sbjct: 20 LAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARVS 74
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 52.8 bits (127), Expect = 2e-07
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDERSKQ 599
+ + D+ +DDEL F K +I +++++D W GE++G G FP+ +V+L +
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPS 63
Query: 600 YSLAGDDSVTETITD 614
D + + +T
Sbjct: 64 QQWCSDLHLLDMLTP 78
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 48.4 bits (115), Expect = 3e-07
Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHC----WIGELNGLKGWFPAKFVELLDERS 597
+A +F D ++ + D++ +I +KD W+ + KG+ + F++ + R
Sbjct: 21 QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRR 80
Query: 598 KQYSLAG 604
+
Sbjct: 81 SHSDASS 87
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 48.9 bits (116), Expect = 1e-06
Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 537 RQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL---NGLKGWFPAKFVELL 593
++R A+ +F+ +L + DV+ I + + G L L+G FP F+ +
Sbjct: 16 KERHGVAIYNFQGSGAPQLSLQIGDVVRIQ-ETCGDWYRGYLIKHKMLQGIFPKSFIHIK 74
Query: 594 DE-----RSKQYSLAGDDSVTETITDLVR 617
+ R+ + + + + + +T +
Sbjct: 75 EVTVEKRRNTENIIPAEIPLAQEVTTTLW 103
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 45.5 bits (107), Expect = 3e-06
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITI---------ISQKDEHC-----WIG---ELNGLK 582
+ +AL D+++ ++++ D++T+ S E W+ E G +
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 583 GWFPAKFVELLDE 595
G FP +VE +
Sbjct: 67 GDFPGTYVEYIGR 79
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 47.5 bits (113), Expect = 2e-05
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 507 PRLSHASLTPNYSPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITII 566
P S S + A S + AL DF D+ L K + + ++
Sbjct: 12 PVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVL 71
Query: 567 SQKDEHCWI-GELNGLKGWFPAKFVELLD 594
W + +GW P+ ++ ++
Sbjct: 72 GYNHNGEWCEAQTKNGQGWVPSNYITPVN 100
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 39.6 bits (92), Expect = 2e-04
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 550 HDDDELGFRKNDVITIISQK-DEHCWIGEL--NGLKGWFPAKFVE 591
L D++ + + + + W G GWFP V
Sbjct: 30 AFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 42.9 bits (101), Expect = 4e-04
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 5/111 (4%)
Query: 505 TDPRLSHASLTPNYSPESHQSDHD---AYADVSRSRQRRAKALLDFERHDDDELGFRKND 561
+ A+ P + SD A AL D+E + +L F+K +
Sbjct: 49 PSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGE 108
Query: 562 VITIISQKDEHCWIGEL--NGLKGWFPAKFVELLDERSKQYSLAGDDSVTE 610
+ I++ + W+ G G+ P+ +V D + G + E
Sbjct: 109 RLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRE 159
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 42.4 bits (100), Expect = 5e-04
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELN--GLKGWFPAKFVELLDERSKQY 600
AL D+E + +L F+K + + I++ + W+ G G+ P+ +V D +
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEE 66
Query: 601 SLAGDDS 607
G +
Sbjct: 67 WYFGKIT 73
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 40.1 bits (93), Expect = 0.001
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVELL 593
+ AL +E D +LGF K + + I+ + W + G +G+ P FV
Sbjct: 10 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILE-QSGEWWKAQSLTTGQEGFIPFNFVAKA 68
Query: 594 DERSKQYSLAGD 605
+ + +
Sbjct: 69 NSLEPEPWFFKN 80
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 37.6 bits (87), Expect = 0.001
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 550 HDDDELGFRKNDVITIISQK-DEHCWIGEL--NGLKGWFPAKFVE 591
L D++ + + + + W G GWFP V
Sbjct: 22 AFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.5 bits (91), Expect = 0.001
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 9/34 (26%)
Query: 161 EKKALSKIK-----YQDIVKASSSDALAFAKQIE 189
EK+AL K++ Y D S+ ALA +E
Sbjct: 18 EKQALKKLQASLKLYAD----DSAPALAIKATME 47
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 41.0 bits (95), Expect = 0.001
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFV 590
+ + E LGF + DV ++ G G + A +
Sbjct: 8 RTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARG--GHWLAVRM 54
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 38.5 bits (90), Expect = 0.011
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIG--ELNGLKGWFPAKFVELLD 594
A +F + +L F K DV+TI++ + W G +G PA +V+ +
Sbjct: 16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 33.9 bits (77), Expect = 0.042
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKD--EHCWIG-ELNGLKGWFPAKFVEL 592
AKA D + +EL F++ + I II D E W+G G G+ VE+
Sbjct: 30 LAKACCDV-KGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEI 84
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 36.4 bits (83), Expect = 0.043
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 537 RQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVE 591
A+ + DE+ D+I + + G G G +P+ V
Sbjct: 441 NAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVR 497
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 35.5 bits (82), Expect = 0.070
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 534 SRSRQRRAKALLDFERHDDDE-----LGFRKNDVITIISQKDEHCW 574
++ R +AL D++ + DD L F+ D++ + + D+ W
Sbjct: 1 TQKRSLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWW 46
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 35.1 bits (81), Expect = 0.087
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 542 KALLDFERHDDD-----ELGFRKNDVITIISQKDEHCW----IGELN--GLKGWFPAKFV 590
+AL D+++ D L FR DV+ +I DE W + + G+ P+K
Sbjct: 5 RALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRR 64
Query: 591 ELLDERSKQ 599
E S+
Sbjct: 65 VERREWSRL 73
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 35.1 bits (81), Expect = 0.11
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 533 VSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFV 590
+ + AL D+E ++L F+K D + ++ + W +G+ P+ +V
Sbjct: 3 MGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVLE-ESGEWWKARSLATRKEGYIPSNYV 61
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 34.8 bits (79), Expect = 0.14
Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 11/96 (11%)
Query: 486 QIL----VDLREATCQIGRHFLTTDPRLSHASLTPNYSPESHQSDHDAYADVSRSRQRRA 541
QIL VD R + + + +
Sbjct: 54 QILRVNNVDFTNII----REEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYI 109
Query: 542 KALLDFERHDDDELGFRKNDVITIIS---QKDEHCW 574
+ ++E+ L F K +V ++ W
Sbjct: 110 RTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSW 145
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 34.0 bits (77), Expect = 0.22
Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 507 PRLSHASLTPNYSPESHQSDHDAYADVSRSRQRRA----KALLDFERHDDDE-------L 555
P S SL + +++ A A + +++ + + + + +D+ +
Sbjct: 3 PSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAI 62
Query: 556 GFRKNDVITIISQKDEHCWIGELNG 580
F D + + + + WIG L
Sbjct: 63 SFEAKDFLHVKEKFNNDWWIGRLVK 87
>3iac_A Glucuronate isomerase; IDP02065, structural genom center for
structural genomics of infectious diseases, CSGI; 2.22A
{Salmonella typhimurium}
Length = 473
Score = 32.7 bits (74), Expect = 0.63
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 6/136 (4%)
Query: 178 SSDALAFAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILRALAWLFPDIGGVVNALDFG 237
S + + + L TN T PR +L + F G+ + FG
Sbjct: 325 SIGDNNISWALSRLLDSMDVTNELPKTILYCLNPRDNEVLATMIGNFQG-PGIAGKVQFG 383
Query: 238 SRGWWFESKRKVKRQKSILQNLIFGEEENGEDIKTKNI-----HQTGIQADQKVLRSLVA 292
S W+ + K + RQ L + + G +++ H+ + +L
Sbjct: 384 SGWWFNDQKDGMLRQLEQLSQMGLLSQFVGMLTDSRSFLSYTRHEYFRRILCNLLGQWAQ 443
Query: 293 SGLPQLEVSLLQHDIE 308
G + ++L ++
Sbjct: 444 DGEIPDDEAMLSRMVQ 459
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 31.8 bits (71), Expect = 1.1
Identities = 9/89 (10%), Positives = 20/89 (22%), Gaps = 7/89 (7%)
Query: 489 VDLREATCQIGRHFLTTDPRLSHASLTPNYSPESHQSDHDAYADVSRSRQRRAKALLDFE 548
VD R + + + + + ++E
Sbjct: 53 VDFTNII----REEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYE 108
Query: 549 RHDDDELGFRKNDVITIIS---QKDEHCW 574
+ L F K +V ++ W
Sbjct: 109 KESPYGLSFNKGEVFRVVDTLYNGKLGSW 137
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.9 bits (69), Expect = 1.4
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 12/92 (13%)
Query: 42 WPQDIISKLNQVPEDPNSQPDYRFDEFGFRVEEEDGPEQNSNKLL---SEPF----IEDP 94
+ ++ + P R G E +Q K L EPF IE P
Sbjct: 124 YSSEVKENSVDSDDKAKVPPLIRIVS-GL---ELSDTKQKGKKFLVIAYEPFENIAIELP 179
Query: 95 QHRLQWVAYLEFNSSSANSPGKEESEALTWDN 126
+ + + ++ + + + WD
Sbjct: 180 PNEILFSEN-NDMDNNNDGVDELNKKCTFWDA 210
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 29.1 bits (66), Expect = 8.3
Identities = 12/66 (18%), Positives = 17/66 (25%), Gaps = 22/66 (33%)
Query: 15 HLGLMRVIL---ANRITIPGGPFSALTPSMWPQDIISKLNQVPEDPNSQPDYRFDEFGFR 71
L ++ NR+ P DI K R + FG+
Sbjct: 170 IYKLDNLVAILDINRLGQSDP-----APLQHQMDIYQK--------------RCEAFGWH 210
Query: 72 VEEEDG 77
DG
Sbjct: 211 AIIVDG 216
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.426
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,718,982
Number of extensions: 912599
Number of successful extensions: 2168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2013
Number of HSP's successfully gapped: 240
Length of query: 940
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 837
Effective length of database: 3,825,930
Effective search space: 3202303410
Effective search space used: 3202303410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)