RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11360
(940 letters)
>d2cxfa1 a.256.1.1 (A:83-249) Rap2 interacting protein X (RUFY3)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 167
Score = 88.8 bits (220), Expect = 6e-21
Identities = 23/175 (13%), Positives = 51/175 (29%), Gaps = 36/175 (20%)
Query: 601 SLAGDDSVTETITDLVRGTLCPALKQILSCGLKRRA--LGEVCHPWLFIEEVATREVEKD 658
+L ++ L + ++ L GLK + LG+ W +E V
Sbjct: 23 ALNLGRTLDSDYAPLQQ--FFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEK------ 74
Query: 659 FTSVYSRLLLCKTYRLDEDGKVLTPEELLYRCVQAVNQSHDMAHVQMDVKFRSLICLGLN 718
V E+ + R+ + L L
Sbjct: 75 --------------------LVPEAAEITASVKDLPGLKTPVGR------GRAWLRLALM 108
Query: 719 EQVLHLWLEVLCSCEPVVLKWYHPWSFISSPGWVQVKCDLRVLSQFPFNLSPDWE 773
++ L +++ L + + ++ ++Y + + + L L+ N E
Sbjct: 109 QKKLSEYMKALINKKELLSEFYEVNALMMEEEGAIIAGLLVGLNVIDANFCMKGE 163
Score = 69.9 bits (171), Expect = 2e-14
Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 817 KVLTPEELLYRCVQAVNQSHDMAHVQMDVKFRSLICLGLNEQVLHLWLEVLCSCEPVVLK 876
V E+ + R+ + L L ++ L +++ L + + ++ +
Sbjct: 75 LVPEAAEITASVKDLPGLKTPVGR------GRAWLRLALMQKKLSEYMKALINKKELLSE 128
Query: 877 WYHPWSFISSPGWVQVKCDLRVLSQFPFNLSPDWE 911
+Y + + + L L+ N E
Sbjct: 129 FYEVNALMMEEEGAIIAGLLVGLNVIDANFCMKGE 163
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 78.7 bits (194), Expect = 2e-18
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S S Q KA +F++ ++DEL K D+I + ++ W G LNG GWFP+ +V +
Sbjct: 6 SGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREI 65
Query: 594 DERSKQ 599
+
Sbjct: 66 KSSERS 71
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 76.6 bits (189), Expect = 4e-18
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVEL 592
RR +AL DFE +D+EL F+ ++IT++ D + W GE + G FP+ FV
Sbjct: 3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT 56
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 77.3 bits (190), Expect = 8e-18
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 520 PESH---QSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIG 576
P SH A + + A+ D+ +++DEL F K +I ++++ D W G
Sbjct: 13 PASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQG 72
Query: 577 ELNGLKGWFPAKFVELLDERSK 598
E+NG+ G FP+ +V++ + S
Sbjct: 73 EINGVTGLFPSNYVKMTTDSSG 94
Score = 29.1 bits (65), Expect = 0.59
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 579 NGLKGWFPAKFVELLDERSKQ 599
+G KGWFPA V+LL S++
Sbjct: 6 SGQKGWFPASHVKLLGPSSER 26
>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Caenorhabditis
elegans, SEM-5 [TaxId: 6239]}
Length = 58
Score = 74.7 bits (184), Expect = 2e-17
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
+ +AL DF + EL F++ DVIT+I++ D + W G+LN +G FP+ +V +
Sbjct: 3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYN 58
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 74.1 bits (182), Expect = 4e-17
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 533 VSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIG-ELNGLKGWFPAKFVE 591
+S S ++ AL D+ + ++L RK D I+ + + W + NG +G+ P+ +V
Sbjct: 3 MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT 62
Query: 592 LLDE 595
++
Sbjct: 63 EAED 66
>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 73.6 bits (181), Expect = 5e-17
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
R A+AL DFE ++DELGFR +V+ ++ + W G L+ G FPA +V +
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 74.1 bits (182), Expect = 5e-17
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKFVEL 592
S + R+AKAL + D EL F V + E W+ G LNG G P +VE
Sbjct: 6 SGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65
Query: 593 LDERS 597
L S
Sbjct: 66 LSGPS 70
>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 74.2 bits (182), Expect = 5e-17
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGL-----KGWFPAK 588
S S A+ + ++L +I I+ + W GEL KGWFPA
Sbjct: 3 SGSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPAS 62
Query: 589 FVELLDERSKQYS 601
V+LL S++ S
Sbjct: 63 HVKLLGPSSERAS 75
>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 74
Score = 74.1 bits (182), Expect = 6e-17
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
S +A+AL + D+ L F K+D+IT++ ++ E+ W GE++G +GWFP +V+++
Sbjct: 6 SGVENLKAQALCSWTAKKDNHLNFSKHDIITVL-EQQENWWFGEVHGGRGWFPKSYVKII 64
Query: 594 DERSKQYS 601
S
Sbjct: 65 PGSESGPS 72
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 73.6 bits (181), Expect = 7e-17
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVE 591
+ +AL +E ++L F++ D+I ++S+ +E GE G G FP FVE
Sbjct: 6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58
>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 71.7 bits (176), Expect = 2e-16
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEH--CWIGELNGLKGWFPAKFVELL 593
+A AL F + +L FRK DVITI+ + D W G +NG +G FPA +VEL+
Sbjct: 3 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 58
>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA
1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 71.8 bits (176), Expect = 4e-16
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 534 SRSRQRRAKALLDFE-RHDDDELGFRKNDVITIISQKD-EHCWIGELN--GLKGWFPAKF 589
S S ++ K + ++ L F + DV+T++ ++ + GE + +GWFP+ +
Sbjct: 3 SGSSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSY 62
Query: 590 VELLDERS 597
+LL S
Sbjct: 63 TKLLSGPS 70
>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 70.9 bits (174), Expect = 4e-16
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVE 591
+AL DF+ +D ELGFR+ D I ++ D + W G +G G FP +V
Sbjct: 4 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 54
>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 71.3 bits (175), Expect = 4e-16
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
S AL + + +L F + + I + QKD W G + G FP+ +V+ D
Sbjct: 6 SGGEEYIALYPYSSVEPGDLTFTEGEEILVT-QKDGEWWTGSIGDRSGIFPSNYVKPKD 63
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 55
Score = 70.1 bits (172), Expect = 8e-16
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELL 593
AL D++ E+ +K D++T+++ ++ W E+N +G+ PA +V+ L
Sbjct: 4 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 55
>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 70.2 bits (172), Expect = 8e-16
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVELLD 594
A A D++ +D+EL F +ND I I D+ W+GEL +G KG FP+ +V L +
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 58
>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 69.8 bits (171), Expect = 1e-15
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVELL 593
+ +A+ D+ D DE+ F+ D I + DE G + G G PA +VE +
Sbjct: 4 KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60
>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 59
Score = 69.5 bits (170), Expect = 1e-15
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLDE 595
++ AK+ DF + EL K+DV+ I+ + + + +G G+ P ++++
Sbjct: 1 KKYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRT 58
>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 69.8 bits (171), Expect = 2e-15
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLK-GWFPAKFVELLD 594
+ + KAL D++ +DEL F K+ +I + +++ W G+ G K WFP+ +VE +
Sbjct: 4 TFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMV 63
Query: 595 E 595
Sbjct: 64 N 64
>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 69.0 bits (169), Expect = 2e-15
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQK-DEHCWIGELNGLKGWFPAKFVEL 592
A A DF+ DDEL F++ D++ +++++ D++ + ELNG G+ P ++E+
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 55
>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 68.4 bits (167), Expect = 3e-15
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVELLD 594
+A+ D+E+ E+ DV+ ++ + + W ++ +GW PA F+E LD
Sbjct: 4 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD 58
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 69.0 bits (168), Expect = 6e-15
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHC--WIGELNGLKGWFPAKFVELL 593
S +AL FE + DE+ F D+I + + G G GWFP +VE +
Sbjct: 3 SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKM 62
Query: 594 DERSKQYSLA 603
+ +++
Sbjct: 63 PSSENEKAVS 72
>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 66.3 bits (162), Expect = 2e-14
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIISQKDEHC---WIGELNGLKGWFPAKFVELL 593
AL D+E +DDEL ++ D +TII ++DE W LN +G+ P + L
Sbjct: 6 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY 62
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 68.1 bits (166), Expect = 2e-14
Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 519 SPESHQSDHDAYADVSRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL 578
SP+ + YA A+ + + DE+ + + + +I + + W+
Sbjct: 1 SPDETEDPEPNYA------GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRK 54
Query: 579 NGLKGWFPAKFVELLDERSKQ 599
+ + G+FP+ +++ + Q
Sbjct: 55 DDVTGYFPSMYLQKSGQDVSQ 75
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 57
Score = 65.9 bits (161), Expect = 3e-14
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE-LNGLKGWFPAKFVE 591
+AL DF +D+++L F+K D++ I + +E W E G +G P +VE
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 53
Score = 65.7 bits (160), Expect = 3e-14
Identities = 8/49 (16%), Positives = 26/49 (53%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGELNGLKGWFPAKFVE 591
A+ + + DE+ + + + +I + + W+ + + G+FP+ +++
Sbjct: 5 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53
>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 64.5 bits (157), Expect = 1e-13
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQKDE--HCWIGE-LNGLKGWFPAKFVELLDE 595
+ L F ++EL F K + + +I + + W + G G P +V +L +
Sbjct: 7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 66
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 64.4 bits (157), Expect = 1e-13
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL--NGLKGWFPAKFVELLDE 595
AL D+E + +L F+K + + I++ + W+ G G+ P+ +V D
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61
>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 63.7 bits (155), Expect = 2e-13
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 536 SRQRRAKALLDFE-RHDDDELGFRKNDVITIISQKD-----EHCWIGEL-NGLKGWFPAK 588
S+ A+AL DF + + E+ +K D++ I+S+KD W NG G+ P
Sbjct: 3 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 62
Query: 589 FVELL 593
++E++
Sbjct: 63 YIEII 67
>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 64.1 bits (156), Expect = 2e-13
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHC----WIGELNGLKGWFPAKFVELL 593
+ A+ F+ + +EL N + I+ KD W+ E+NG KG+ P+ ++
Sbjct: 13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKT 72
Query: 594 D 594
+
Sbjct: 73 E 73
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 67.5 bits (164), Expect = 2e-13
Identities = 25/162 (15%), Positives = 38/162 (23%), Gaps = 14/162 (8%)
Query: 277 QTGIQADQKVLRSLVASGLPQLEVSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDL 336
Q GI K L LV L +E W L ++R+WD
Sbjct: 2 QPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDT 61
Query: 337 LFLDGSIVLFHSCEPVLVTLENSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGD 396
+ S + ++ S+ V P
Sbjct: 62 YLSETSQEVT--------------SSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTT 107
Query: 397 IVDIDNLLEVSFSVSTSISQSLIDSHRRRHLAFLMSDQGALI 438
+ SL + H AFL+ L+
Sbjct: 108 ALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLM 149
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 57
Score = 63.2 bits (154), Expect = 2e-13
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCW-IGELNGLKGWFPAKFVELLD 594
AL DF D+ L K + + ++ W + +GW P+ ++ ++
Sbjct: 5 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 57
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 62.0 bits (151), Expect = 5e-13
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWIGE--LNGLKGWFPAKFVE 591
AL D+E +D+L F K + I++ + W G G+ P+ +V
Sbjct: 5 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55
>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo
sapiens) [TaxId: 9606]}
Length = 65
Score = 62.1 bits (151), Expect = 6e-13
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKFVELLD 594
+ AL D+E ++L F+K D + ++ + E +G+ P+ +V +D
Sbjct: 4 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 61
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 62.1 bits (151), Expect = 8e-13
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIG-ELNGLKGWFPAKFVELLDERSKQ 599
A+ DF+ + +L + I+ + D H W + G +G+ P+ +V +
Sbjct: 6 VAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNNLD 64
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 61.8 bits (150), Expect = 9e-13
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQK-DEHCWIGEL-NGLKGWFPAKFVE 591
S A +F + +L F K DV+TI++ D + + + G +G PA +V+
Sbjct: 2 SWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ 61
Query: 592 LLDERS 597
+
Sbjct: 62 KREGVK 67
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 65.3 bits (158), Expect = 1e-12
Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 17/120 (14%)
Query: 124 WDNL---GVISRTDKLRSMTRQGIPHSLRPQLWLRLSGALEKKALSKIKY---------- 170
+DN+ I LR ++ GIP RP +W L G L + +
Sbjct: 10 FDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRD 69
Query: 171 --QDIVKASSSDALAFAKQIEKDLLRTMPTNACFSTFSSTGVPRLRRILRALAWLFPDIG 228
+ S + QIE D+ RT P + + L+RIL A P G
Sbjct: 70 SLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLY--QFKSVQNSLQRILYLWAIRHPASG 127
>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 83
Score = 61.9 bits (150), Expect = 1e-12
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 540 RAKALLDFERHDDDELGFRKNDVITIIS-----QKDEHCWIG----------ELNGLKGW 584
+ +A D+ D DEL + DV+ +I ++DE +G EL +G
Sbjct: 14 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGV 73
Query: 585 FPAKFVELLD 594
FP F E +
Sbjct: 74 FPENFTERVQ 83
>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 61.0 bits (148), Expect = 2e-12
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 538 QRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GELNGLKGWFPAKFVE 591
AL +E D +LGF K + + I+ Q E G +G+ P FV
Sbjct: 6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVA 60
>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 56
Score = 58.0 bits (140), Expect = 1e-11
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 541 AKALLDFERHDDDELGFRKNDVITIISQKDEH---CWIGELNGLKGWFPAKFVEL 592
K L + + DDDE+ D I+++++ + G G P ++ +
Sbjct: 2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 56
>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha
subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 57.5 bits (138), Expect = 5e-11
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 17/76 (22%)
Query: 539 RRAKALLDFERHDDDELGFRKNDVITIISQK---------------DEHCWIG--ELNGL 581
+ +AL D+++ ++++ D++T+ + G E G
Sbjct: 4 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGE 63
Query: 582 KGWFPAKFVELLDERS 597
+G FP +VE + +
Sbjct: 64 RGDFPGTYVEYIGRKK 79
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus
[TaxId: 10090]}
Length = 53
Score = 56.1 bits (135), Expect = 8e-11
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 542 KALLDFERHDDDELGFRKNDVITIISQKDEHCWIGEL-NGLKGWFPAKFVE 591
AL D++ +D EL R ++ ++ + H W + NG +G+ P+ ++
Sbjct: 2 IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 52
>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 96
Score = 56.3 bits (135), Expect = 2e-10
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 541 AKALLDFERHDDD-----ELGFRKNDVITIISQKDEHCWIGEL------NGLKGWFPAKF 589
+AL D+++ D L FR DV+ +I DE W G+ P+K
Sbjct: 4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKR 63
Query: 590 VELLDERSKQYSLAGDDS 607
E S+ + S
Sbjct: 64 RVERREWSRLKAKDWGSS 81
>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 56.3 bits (135), Expect = 2e-10
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 536 SRQRRAKALLDF------ERHDDDELGFRKNDVITIISQKDEHC-WIGEL-NGLKGWFPA 587
+ A + + + EL + + DE + GEL +G +G P+
Sbjct: 15 GKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPS 74
Query: 588 KFVELLDERSKQ 599
FV+ + + +
Sbjct: 75 NFVDFVQDNESR 86
>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 74
Score = 54.7 bits (131), Expect = 4e-10
Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 534 SRSRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHCW------IGELNGLKGWFPA 587
S S + D+ ++E+ + +V+ +++ ++ +GW P
Sbjct: 3 SGSSGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPG 62
Query: 588 KFVELLDERS 597
+ S
Sbjct: 63 SILAPFSGPS 72
>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 55.1 bits (132), Expect = 6e-10
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 12/92 (13%)
Query: 520 PESHQSDHDAYADVSRSR-QRRAKALLDFERHDDDELGFRKNDVITIISQKDEH--CWI- 575
P +D AD S A AL D+ D L + V+ + S+ +
Sbjct: 2 PMPKLADRKLCADQECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWG 61
Query: 576 --------GELNGLKGWFPAKFVELLDERSKQ 599
G+L G+FP+ V
Sbjct: 62 GSVQGDYYGDLAARLGYFPSSIVREDQTLKPG 93
>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 96
Score = 54.6 bits (131), Expect = 8e-10
Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 523 HQSDHDAYADVSRSRQR----RAKALLDFERHDDDE-------LGFRKNDVITIISQKDE 571
+++ A A + +++ + + + + +D+ + F D + + + +
Sbjct: 2 REAERQAQAQLEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNN 61
Query: 572 HCWIGEL---NGLKGWFPAKFVELLDERSKQ 599
WIG L G+ P+ V+L + R +
Sbjct: 62 DWWIGRLVKEGCEIGFIPSP-VKLENMRLQH 91
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 69
Score = 53.3 bits (128), Expect = 1e-09
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 543 ALLDFERHDDDELGFRKNDVITIISQKDEHCWI-GEL--NGLKGWFPAKFVE 591
+ L D++ + + EH W G GWFP V
Sbjct: 15 GIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 145
Score = 54.0 bits (129), Expect = 4e-09
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 14/90 (15%)
Query: 524 QSDHDAYADVSRSRQR----RAKALLDFERHDDD-------ELGFRKNDVITIISQKDEH 572
+ + A + R++ + K + + D+ + F D + I + +
Sbjct: 5 EREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNND 64
Query: 573 CWIGEL---NGLKGWFPAKFVELLDERSKQ 599
WIG L G+ P+ ++
Sbjct: 65 WWIGRLVKEGCEIGFIPSPLRLENIRIQQE 94
>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 49.0 bits (116), Expect = 7e-08
Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 536 SRQRRAKALLDFERHDDDELGFRKNDVITIISQKDEHC----WIGELNGLKGWFPAKFVE 591
++ +A +F D ++ + D++ +I +KD W+ + KG+ + F++
Sbjct: 15 PPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLK 74
Query: 592 LLDERSKQ 599
+ R
Sbjct: 75 PYNPRRSH 82
>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 42.7 bits (100), Expect = 3e-05
Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 14/115 (12%)
Query: 524 QSDHDAYADVSRSRQR----RAKALLDFERHDDD-------ELGFRKNDVITIISQKDEH 572
+ + A + R++ + + + + D+ + F D + I +
Sbjct: 5 EVESQAQQQLERAKHKPVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSND 64
Query: 573 CWIGEL---NGLKGWFPAKFVELLDERSKQYSLAGDDSVTETITDLVRGTLCPAL 624
WIG L G + P+ ++ + + R + P+L
Sbjct: 65 WWIGRLVKEGGDIAFIPSPQRLESIRLKQEQKARRSGNPSSLSDIGNRRSPPPSL 119
>d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast
(Candida albicans) [TaxId: 5476]}
Length = 165
Score = 28.2 bits (63), Expect = 2.6
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 43 PQDIISKLNQVPEDPNSQPD-YRFDEFGFRVEEEDGPEQNSNKLLSEPFIEDPQHRLQWV 101
P D + VP DP + + +++ KLL + ++ED ++
Sbjct: 3 PIDKLKTPEDVPNDPLPLISDFEWSTLDI---DDNLQLDELYKLLYDNYVEDIDATFRFK 59
Query: 102 AYLEFNSSSANSPGKEESEALTWDNLGVISRTDKLRSMTRQGIPHSLR 149
EF + PG + W ++GV ++ P + +
Sbjct: 60 YSHEFFQWALKPPGWRKD----W-HVGVRVKSTGKLVAFIAATPVTFK 102
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423,
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 85
Score = 26.7 bits (59), Expect = 4.2
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 556 GFRKNDVITIISQKDEHCWIGELN 579
RK D+I + S K +G
Sbjct: 32 SIRKGDMIFVKSSKGYFIAVGMAE 55
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 27.3 bits (60), Expect = 8.7
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 350 EPVLVTLENSAEIFNALSDIPGDIVDIDNLLEVGAEIFNALSDIPGDIVD 399
E + + + D+ G D+ L +G + + GD VD
Sbjct: 37 ESNVQEVRCPVTVC---GDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVD 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.426
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,627,547
Number of extensions: 175593
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 64
Length of query: 940
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 846
Effective length of database: 1,116,976
Effective search space: 944961696
Effective search space used: 944961696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)