Query psy11361
Match_columns 200
No_of_seqs 116 out of 1065
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 16:26:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_Q RPL17, 60S ribosomal pr 100.0 5.3E-68 1.8E-72 444.8 15.1 176 1-191 3-178 (183)
2 2zkr_r 60S ribosomal protein L 100.0 1.6E-66 5.5E-71 436.0 14.9 180 1-195 1-180 (184)
3 3u5e_P L20A, YL17, 60S ribosom 100.0 1.1E-64 3.9E-69 424.9 16.3 171 1-186 1-171 (184)
4 3iz5_V 60S ribosomal protein L 100.0 3E-63 1E-67 412.1 14.6 163 1-178 1-164 (171)
5 3j21_S 50S ribosomal protein L 100.0 1.8E-59 6.1E-64 384.1 10.4 150 2-169 5-154 (155)
6 1vq8_R 50S ribosomal protein L 100.0 4.6E-59 1.6E-63 381.7 12.0 151 2-170 3-153 (155)
7 3r8s_S 50S ribosomal protein L 100.0 2.9E-39 9.9E-44 250.5 9.3 109 13-168 1-110 (110)
8 2ftc_M Mitochondrial ribosomal 100.0 1.2E-37 4E-42 241.5 12.1 106 18-170 2-109 (110)
9 2zjr_P 50S ribosomal protein L 100.0 2.6E-38 8.9E-43 253.5 8.1 111 12-169 21-132 (134)
10 1i4j_A 50S ribosomal protein L 100.0 2.4E-37 8.1E-42 239.8 10.1 107 14-170 2-109 (110)
11 3bbo_U Ribosomal protein L22; 100.0 5.3E-38 1.8E-42 266.0 1.2 122 3-171 20-142 (199)
12 4a17_Q RPL17, 60S ribosomal pr 90.2 0.21 7.1E-06 41.7 3.5 24 131-154 101-124 (183)
13 3u5e_P L20A, YL17, 60S ribosom 85.3 0.44 1.5E-05 39.7 2.6 23 132-154 100-122 (184)
14 3iz5_V 60S ribosomal protein L 83.9 0.28 9.5E-06 40.4 0.7 24 132-155 101-124 (171)
15 3j21_S 50S ribosomal protein L 83.8 0.26 9E-06 39.8 0.6 22 132-153 100-121 (155)
16 1vq8_R 50S ribosomal protein L 81.0 0.45 1.5E-05 38.5 0.9 23 131-153 97-119 (155)
17 2zkr_r 60S ribosomal protein L 80.1 0.91 3.1E-05 37.7 2.5 37 131-170 99-135 (184)
18 4fxe_A Antitoxin RELB; toxin/a 72.8 6.8 0.00023 28.0 5.2 33 27-60 14-46 (79)
19 3r8s_S 50S ribosomal protein L 62.9 2.9 0.0001 31.6 1.6 19 135-153 59-78 (110)
20 3lvl_A NIFU-like protein; prot 62.8 15 0.00053 28.0 5.7 70 13-104 55-124 (129)
21 2zjr_P 50S ribosomal protein L 60.7 3.7 0.00013 32.3 1.8 18 136-153 82-99 (134)
22 1i4j_A 50S ribosomal protein L 56.7 4.3 0.00015 30.6 1.6 23 132-154 56-79 (110)
23 3bbo_U Ribosomal protein L22; 42.2 9.8 0.00034 32.0 1.6 23 131-153 84-107 (199)
24 2ftc_M Mitochondrial ribosomal 40.3 12 0.00042 28.0 1.8 22 132-153 52-75 (110)
25 4eb5_C NIFU protein (NIFU-1); 35.8 51 0.0018 26.2 4.9 69 14-103 50-118 (153)
26 2qq4_A Iron-sulfur cluster bio 33.7 1.5E+02 0.0051 22.6 7.1 38 14-51 56-93 (138)
27 3k2t_A LMO2511 protein; lister 33.3 21 0.00073 24.1 1.9 15 36-50 10-24 (57)
28 2d9i_A NEDD4-binding protein 2 33.0 24 0.00083 25.1 2.3 19 36-54 13-31 (96)
29 2z7e_A ISCU protein, NIFU-like 32.7 46 0.0016 26.4 4.1 71 13-104 54-124 (157)
30 3fau_A NEDD4-binding protein 2 31.0 28 0.00096 24.0 2.3 20 36-55 5-24 (82)
31 1su0_B NIFU like protein ISCU; 28.9 1.4E+02 0.0047 23.5 6.3 76 14-102 57-142 (159)
32 3ka5_A Ribosome-associated pro 28.2 28 0.00096 24.3 1.9 15 36-50 10-24 (65)
33 2vkc_A NEDD4-binding protein 2 24.5 58 0.002 24.8 3.2 19 36-54 58-76 (135)
34 2zqe_A MUTS2 protein; alpha/be 22.9 48 0.0017 23.3 2.3 18 36-53 9-26 (83)
35 3lyv_A Ribosome-associated fac 22.1 27 0.00093 24.4 0.8 14 36-49 11-24 (66)
No 1
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=100.00 E-value=5.3e-68 Score=444.82 Aligned_cols=176 Identities=47% Similarity=0.763 Sum_probs=155.3
Q ss_pred CcccCCCCCCCCceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCC
Q psy11361 1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQ 80 (200)
Q Consensus 1 m~~YS~~~~d~~k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~ 80 (200)
|++||++|+||+++|+|+++++||||+|+++||++||||++++|+.||++||++|+||||++||+||||++|+++|||++
T Consensus 3 m~~Ys~~~~~p~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~~g~~~ 82 (183)
T 4a17_Q 3 KTNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHEFGRTQ 82 (183)
T ss_dssp CCCCSSCCSCTTSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGGTTCSB
T ss_pred ccccCCCCCCCCeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhhcCCcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhcCCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCce
Q psy11361 81 GRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCH 160 (200)
Q Consensus 81 GR~P~Kaa~~~lklLksA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~H 160 (200)
||||+|||++|++||+||++||+++|||+|+|+|+||+||+||+++|++|||+| |++||++++||
T Consensus 83 Gr~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~G---------------Ra~pi~k~~~H 147 (183)
T 4a17_Q 83 GRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVNRAQKGRRRTYRAHG---------------RINPYLNSGCH 147 (183)
T ss_dssp EECCHHHHHHHHHHHHHHHHHTTTTTCCSTTEEEEEEEEEECCCEEEEEEETTT---------------EEEEEEECCEE
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEECCCCcccCcCccCCC---------------CcCCccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEEEEeeCccccCCCCCCCccccccCHHHHH
Q psy11361 161 IEVILSERERVVAKPREDEPHKKKISKKKLA 191 (200)
Q Consensus 161 I~ivl~e~~~~~~k~~~~~~~~kk~~~~~~~ 191 (200)
|||+|+|.++++|+|++++++|||.++||-+
T Consensus 148 Ieiil~Eke~~v~k~~~~~~~~k~~~~~~~~ 178 (183)
T 4a17_Q 148 VEIFAQEVAAKVRKEAPKDAAKKVPKTKKGK 178 (183)
T ss_dssp EEEEEEECCCC--------------------
T ss_pred EEEEEeeccccCcCchhhhhhcccccccccc
Confidence 9999999999999999999999999999754
No 2
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.6e-66 Score=436.00 Aligned_cols=180 Identities=72% Similarity=1.193 Sum_probs=149.5
Q ss_pred CcccCCCCCCCCceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCC
Q psy11361 1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQ 80 (200)
Q Consensus 1 m~~YS~~~~d~~k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~ 80 (200)
|++||++++||+++|+|++++++|||+|+++||++||||++++|+.||+|||++|+||||+|||+||||++|+++|||++
T Consensus 1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~~~~~~ 80 (184)
T 2zkr_r 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQ 80 (184)
T ss_dssp -CCCSSCCSCTTTEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSB
T ss_pred CCccCCCCCCCCeeEEEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhcCCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCce
Q psy11361 81 GRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCH 160 (200)
Q Consensus 81 GR~P~Kaa~~~lklLksA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~H 160 (200)
||||+|||.+|++||+||++||+++|||+|+|||+||+||+||+++|++|||+| |++||++++||
T Consensus 81 GR~PkKaa~~ilklLksA~aNAe~kglD~d~L~I~~i~Vnkg~~~kR~~pRA~G---------------Ra~p~~k~~~H 145 (184)
T 2zkr_r 81 GRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHG---------------RINPYMSSPCH 145 (184)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHTSCTTTCEEEEEEEC-CCCEEEEEEETTT---------------EEEEEEEC-CC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccCcCCCCCCCC---------------CCCCccCCCce
Confidence 999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEEEEeeCccccCCCCCCCccccccCHHHHHHHHH
Q psy11361 161 IEVILSERERVVAKPREDEPHKKKISKKKLARAKE 195 (200)
Q Consensus 161 I~ivl~e~~~~~~k~~~~~~~~kk~~~~~~~~~~~ 195 (200)
|+|+|+|.++++++|+++++++||+|++|+++.+.
T Consensus 146 I~vil~E~~~~v~k~~~~~~~~~~~~~~~~~~~~~ 180 (184)
T 2zkr_r 146 IEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180 (184)
T ss_dssp EEEEEECC---------------------------
T ss_pred EEEEEEEcCccCCCchhhhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999988765
No 3
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=100.00 E-value=1.1e-64 Score=424.91 Aligned_cols=171 Identities=51% Similarity=0.842 Sum_probs=166.2
Q ss_pred CcccCCCCCCCCceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCC
Q psy11361 1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQ 80 (200)
Q Consensus 1 m~~YS~~~~d~~k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~ 80 (200)
|++||++|+||+++|+|++++++|||+|+++||++||||++++|+.||++||++|+||||+|||+||||++|+++|||++
T Consensus 1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~~g~~~ 80 (184)
T 3u5e_P 1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTK 80 (184)
T ss_dssp -CCCSCCCSCGGGEEEEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGGGTCSC
T ss_pred CCccCCCCCCCCceEEEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhccCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhcCCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCce
Q psy11361 81 GRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCH 160 (200)
Q Consensus 81 GR~P~Kaa~~~lklLksA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~H 160 (200)
||||+|||.+|++||+||++||+++|||+|+|||+||+||+||+++|++|||+| |++||++++||
T Consensus 81 GR~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~~i~Vnkgp~~kR~~pRA~G---------------Ra~p~~k~~~H 145 (184)
T 3u5e_P 81 ARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHG---------------RINKYESSPSH 145 (184)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTTCCTTTEEEEEEEEEECCCEEEEEEEGGG---------------EEEEEEECCEE
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCCcccCCCCCCCC---------------CCCcccCCCcc
Confidence 999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEEEEeeCccccCCCCCCCccccccC
Q psy11361 161 IEVILSERERVVAKPREDEPHKKKIS 186 (200)
Q Consensus 161 I~ivl~e~~~~~~k~~~~~~~~kk~~ 186 (200)
|+|+|+|.++++|+|+++.++++...
T Consensus 146 I~vil~E~e~~v~k~~~~~~~~~~~~ 171 (184)
T 3u5e_P 146 IELVVTEKEEAVAKAAEKKVVRLTSR 171 (184)
T ss_dssp EEEEEEECCCCCCCCCCCCCCCCCHH
T ss_pred EEEEEeeccccCCCcHHHHHHHHHHH
Confidence 99999999999999999888855443
No 4
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=100.00 E-value=3e-63 Score=412.14 Aligned_cols=163 Identities=63% Similarity=1.003 Sum_probs=160.8
Q ss_pred CcccCCCCCCCCceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhc-ccCCC
Q psy11361 1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAK-QWGTT 79 (200)
Q Consensus 1 m~~YS~~~~d~~k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~-~~g~~ 79 (200)
|++||++++||+++|+|++++++|||+|+++||++||||++++|+.||++||++|+||||+|||+||||++|++ +|||+
T Consensus 1 m~~Ys~~~~~~~~~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPf~r~~~gvg~~~q~~~~~~~~ 80 (171)
T 3iz5_V 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNG 80 (171)
T ss_dssp CCSCSSCCSCTTTEEEEEEEEEESCHHHHHHHHHHSCSCCSHHHHHHHHHHHHTSSCEECSSCCSSCCCCSCCBTTBSCS
T ss_pred CCcccCCCCCCCeeEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhcCCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCc
Q psy11361 80 QGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPC 159 (200)
Q Consensus 80 ~GR~P~Kaa~~~lklLksA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~ 159 (200)
+||||+|||.+|++||+||++||+++|||+|+|||+||+||+||+++|++|||+| |++||++++|
T Consensus 81 ~gr~PkKaa~~ilklL~sA~aNAe~kglD~d~L~I~~i~vnkgp~~kR~~pRA~G---------------Ra~p~~k~~~ 145 (171)
T 3iz5_V 81 QGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHG---------------RINPYMSSPC 145 (171)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEECCCBCCEEEETTT---------------EEEECCBCEE
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEeccCCcccCCCCCCCC---------------CCCcccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred eEEEEEeeCccccCCCCCC
Q psy11361 160 HIEVILSERERVVAKPRED 178 (200)
Q Consensus 160 HI~ivl~e~~~~~~k~~~~ 178 (200)
||+|+|+|.++++|||++.
T Consensus 146 HI~vil~E~~~~v~k~~~~ 164 (171)
T 3iz5_V 146 HIELILSEKEEPVKKEPES 164 (171)
T ss_dssp EEEEEEETTHHHHTTTTCC
T ss_pred cEEEEEeecCccCCCchhh
Confidence 9999999999999998663
No 5
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-59 Score=384.09 Aligned_cols=150 Identities=33% Similarity=0.498 Sum_probs=147.5
Q ss_pred cccCCCCCCCCceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCCC
Q psy11361 2 GRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQG 81 (200)
Q Consensus 2 ~~YS~~~~d~~k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~G 81 (200)
++||++|+||+++|+|++++++|||+|+++||++||||++++|+.||++||++|+||||+|||+||||++| |||++|
T Consensus 5 ~~Ys~~~~~~~~~akA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~---~~~~~g 81 (155)
T 3j21_S 5 FGYSFQNFDPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPG---KGFGPG 81 (155)
T ss_dssp -CCCSCCCHHHHEEEEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCS---SSCSBE
T ss_pred eecccCCCCCCeeEEEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccc---cCCCcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhcCCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCceE
Q psy11361 82 RWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHI 161 (200)
Q Consensus 82 R~P~Kaa~~~lklLksA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~HI 161 (200)
|||+|+|.+|++||+||++||+++|||+|+|||+||+||+||+++|++|||+| |++||++++|||
T Consensus 82 r~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~vnkgp~~kR~~pRA~G---------------R~~~~~k~~~HI 146 (155)
T 3j21_S 82 RYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFG---------------RATPFNEQTTHI 146 (155)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEEEECCEEECSTT---------------CEEECCEEEEEE
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEecCCCcccCCCCCCCC---------------CCCceecCCccE
Confidence 99999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EEEEeeCc
Q psy11361 162 EVILSERE 169 (200)
Q Consensus 162 ~ivl~e~~ 169 (200)
+|+|+|.+
T Consensus 147 ~vil~E~~ 154 (155)
T 3j21_S 147 EVVVEEIR 154 (155)
T ss_dssp EEEEECCC
T ss_pred EEEEEecc
Confidence 99999876
No 6
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=100.00 E-value=4.6e-59 Score=381.67 Aligned_cols=151 Identities=30% Similarity=0.490 Sum_probs=146.9
Q ss_pred cccCCCCCCCCceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCCC
Q psy11361 2 GRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQG 81 (200)
Q Consensus 2 ~~YS~~~~d~~k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~G 81 (200)
++||+ +.||+++|+|.++++++||+|+++||++||||++++|+.||++||++|+||||+|||+||||++|+ |||++|
T Consensus 3 ~~Ys~-~~~~~k~~kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~--~~~~~g 79 (155)
T 1vq8_R 3 ISYSV-EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKV--DGWDAG 79 (155)
T ss_dssp CCCSS-CCCGGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTC--SSSSBE
T ss_pred cccCC-CCCCCceEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccc--cccccC
Confidence 57999 889999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhcCCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCceE
Q psy11361 82 RWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHI 161 (200)
Q Consensus 82 R~P~Kaa~~~lklLksA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~HI 161 (200)
|||+|||.+|++||+||++||+++|||+|+|||+||+||+||++||++|||+| |++||++++|||
T Consensus 80 r~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~v~kg~~~kR~~pRA~G---------------Ra~~~~k~~~HI 144 (155)
T 1vq8_R 80 RYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMG---------------RASAWNSPQVDV 144 (155)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEECGGG---------------CEEECCEEEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccccCCCCCCCC---------------CCCceeCCCccE
Confidence 99999999999999999999998899999999999999999999999999999 999999999999
Q ss_pred EEEEeeCcc
Q psy11361 162 EVILSERER 170 (200)
Q Consensus 162 ~ivl~e~~~ 170 (200)
+|+|+|.+.
T Consensus 145 ~vil~E~~~ 153 (155)
T 1vq8_R 145 ELILEEPEV 153 (155)
T ss_dssp EEEEECC--
T ss_pred EEEEEecCC
Confidence 999998753
No 7
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=100.00 E-value=2.9e-39 Score=250.53 Aligned_cols=109 Identities=27% Similarity=0.408 Sum_probs=105.8
Q ss_pred ceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCCCCCchhhHHHHH
Q psy11361 13 KSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLL 92 (200)
Q Consensus 13 k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~GR~P~Kaa~~~l 92 (200)
++++|.++++++||+|+++||++||||++++|+.+|+ | ||+|+|.+|+
T Consensus 1 me~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~----------f----------------------~pkkaa~~v~ 48 (110)
T 3r8s_S 1 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILT----------Y----------------------TNKKAAVLVK 48 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH----------H----------------------CCCHHHHHHH
T ss_pred CeEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHh----------h----------------------CCHHHHHHHH
Confidence 4689999999999999999999999999999999999 9 9999999999
Q ss_pred HHHHHHHHhhhh-cCCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCceEEEEEeeC
Q psy11361 93 QLLKNAESNADY-RGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSER 168 (200)
Q Consensus 93 klLksA~aNA~~-~gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~HI~ivl~e~ 168 (200)
++|+||++||++ .|||+|+|||+||+||+||++||++|||+| |+++|++++|||+|+|+|.
T Consensus 49 k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~~~KR~~pRA~G---------------R~~~i~k~~~HI~vvl~ek 110 (110)
T 3r8s_S 49 KVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKG---------------RADRILKRTSHITVVVSDR 110 (110)
T ss_dssp HHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEEEEEEEEECGGG---------------CEEEEEEEEEEEEEEEECC
T ss_pred HHHHHHHHhHHHhcCCChhheEEEEEEeCCCCccCCCCcCCCC---------------CCCCcccCCccEEEEEecC
Confidence 999999999996 599999999999999999999999999999 9999999999999999874
No 8
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=100.00 E-value=1.2e-37 Score=241.53 Aligned_cols=106 Identities=23% Similarity=0.274 Sum_probs=102.4
Q ss_pred eeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCCCCCchhhHHHHHHHHHH
Q psy11361 18 RGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKN 97 (200)
Q Consensus 18 ~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~GR~P~Kaa~~~lklLks 97 (200)
+++++++||+|+++||++||||++++|+.+|+ | ||+|||.+|+++|+|
T Consensus 2 ~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~----------f----------------------~pkkaa~~v~klL~s 49 (110)
T 2ftc_M 2 CRRQIKYSKDKMWYLAKLIRGMSIDQALAQLE----------F----------------------NDKKGAKIIKEVLLE 49 (110)
T ss_pred CcccceeCHHHHHHHHHHHcCCcHHHHHHHHH----------H----------------------CCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999 8 999999999999999
Q ss_pred HHHhhhh-cCCC-CCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCceEEEEEeeCcc
Q psy11361 98 AESNADY-RGLD-TDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERER 170 (200)
Q Consensus 98 A~aNA~~-~gld-~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~HI~ivl~e~~~ 170 (200)
|++||++ +|+| +|+|||+||+||+||++||++|||+| |+++|++++|||+|+|+|.+.
T Consensus 50 A~aNA~~~~gld~~~~L~I~~~~v~~g~~~KR~~prA~G---------------Ra~~i~k~~~HI~vvl~e~~~ 109 (110)
T 2ftc_M 50 AQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRG---------------RFGIMEKVYCHYFVKLVEGPP 109 (110)
T ss_pred HHHhHHHhcCCCCccCeEEEEEEECCCCcccCCCCCCCC---------------CCCccccCCccEEEEEEeCCC
Confidence 9999995 8999 89999999999999999999999999 999999999999999999764
No 9
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=100.00 E-value=2.6e-38 Score=253.46 Aligned_cols=111 Identities=26% Similarity=0.380 Sum_probs=107.9
Q ss_pred CceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCCCCCchhhHHHH
Q psy11361 12 TKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFL 91 (200)
Q Consensus 12 ~k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~GR~P~Kaa~~~ 91 (200)
.++|+|.++++++||+|+++||++||||++++|+.+|+ | ||+|||.+|
T Consensus 21 ~~~akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~----------f----------------------~pkKaA~~v 68 (134)
T 2zjr_P 21 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR----------F----------------------IPRSASEPV 68 (134)
T ss_dssp CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHH----------H----------------------CCCTTHHHH
T ss_pred ceEEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHH----------H----------------------CcHhHHHHH
Confidence 45799999999999999999999999999999999999 8 999999999
Q ss_pred HHHHHHHHHhhh-hcCCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCceEEEEEeeCc
Q psy11361 92 LQLLKNAESNAD-YRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERE 169 (200)
Q Consensus 92 lklLksA~aNA~-~~gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~HI~ivl~e~~ 169 (200)
+++|+||++||+ ++|||+|+|||+||+||+||++||++|||+| |+++|++++|||+|+|+|.+
T Consensus 69 ~klL~sA~aNAe~n~gld~d~L~I~~i~V~~Gp~lKR~~pRA~G---------------Ra~~i~k~tsHItvvl~E~~ 132 (134)
T 2zjr_P 69 AKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARG---------------SANIIKKRTSHITIIVAEKG 132 (134)
T ss_dssp HHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECCCEEEEEECSTT---------------CEEEEEECCEEEEEEEEECC
T ss_pred HHHHHHHHHhHHHhcCCChhheEEEEEEECCCccccCCCCCCCC---------------CCcccccCCceEEEEEEecC
Confidence 999999999999 6999999999999999999999999999999 99999999999999999875
No 10
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=100.00 E-value=2.4e-37 Score=239.80 Aligned_cols=107 Identities=26% Similarity=0.353 Sum_probs=103.6
Q ss_pred eEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCCCCCchhhHHHHHH
Q psy11361 14 SCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQ 93 (200)
Q Consensus 14 ~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~GR~P~Kaa~~~lk 93 (200)
+++|.++++++||+|+++||++||||++++|+.+|+ | ||+|+|.+|++
T Consensus 2 ~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~----------~----------------------~pkkaa~~v~k 49 (110)
T 1i4j_A 2 EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILR----------Y----------------------TNKRGAYFVAK 49 (110)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH----------H----------------------CCCTTHHHHHH
T ss_pred eEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHH----------H----------------------CCHHHHHHHHH
Confidence 689999999999999999999999999999999999 8 99999999999
Q ss_pred HHHHHHHhhhhc-CCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCceEEEEEeeCcc
Q psy11361 94 LLKNAESNADYR-GLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERER 170 (200)
Q Consensus 94 lLksA~aNA~~~-gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~HI~ivl~e~~~ 170 (200)
+|+||++||+++ |||+|+|||+||+||+||+ ++|||+| |+++|++++|||+|+|+|.++
T Consensus 50 lL~sA~aNAe~n~gld~d~L~I~~~~v~~g~~---~~pRA~G---------------Ra~~i~k~~~HItvvl~e~~~ 109 (110)
T 1i4j_A 50 VLESAAANAVNNHDALEDRLYVKAAYVDEGPA---VLPRARG---------------RADIIKKRTSHITVILGEKHG 109 (110)
T ss_dssp HHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEE---ECSCSSS---------------CCCSCCEEEEEEEEEEEESSC
T ss_pred HHHHHHHhHHHhcCCChhheEEEEEEECCCCe---EeecCCC---------------CCcccccCCeeEEEEEEecCC
Confidence 999999999965 9999999999999999999 9999999 999999999999999998753
No 11
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=5.3e-38 Score=266.03 Aligned_cols=122 Identities=18% Similarity=0.352 Sum_probs=109.3
Q ss_pred ccCCCCCCCCceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCCCC
Q psy11361 3 RYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGR 82 (200)
Q Consensus 3 ~YS~~~~d~~k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~GR 82 (200)
.||..+.||+++|+|.++++++||+|+++||++||||++++|+.+|+ |
T Consensus 20 ~~~~~~~n~~~eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~----------f---------------------- 67 (199)
T 3bbo_U 20 GLHHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILE----------L---------------------- 67 (199)
T ss_dssp ----------CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGG----------G----------------------
T ss_pred cCCCCCCCCCeEEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHH----------H----------------------
Confidence 57777799999999999999999999999999999999999999999 8
Q ss_pred CchhhHHHHHHHHHHHHHhhhh-cCCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCceE
Q psy11361 83 WPRKSADFLLQLLKNAESNADY-RGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHI 161 (200)
Q Consensus 83 ~P~Kaa~~~lklLksA~aNA~~-~gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~HI 161 (200)
+|+|+|..|+++|+||++||++ +|+|+|+|||+||+||+||++||++|||+| |+++|++++|||
T Consensus 68 ~PkKaA~~V~KlLkSA~ANAe~n~GLD~d~L~I~~i~VnkGp~lKR~~pRArG---------------Ra~~I~KrtsHI 132 (199)
T 3bbo_U 68 MPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARG---------------RSYMILRPTCHI 132 (199)
T ss_dssp CCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCBCCCCCCCCCSSSS---------------CSCCCCCCCBCC
T ss_pred CCHhHHHHHHHHHHHHHHhHHhccCCChhheEEEEEEECCCCcccCCCCCCCC---------------CCCcccCCCccE
Confidence 8999999999999999999996 799999999999999999999999999999 999999999999
Q ss_pred EEEEeeCccc
Q psy11361 162 EVILSERERV 171 (200)
Q Consensus 162 ~ivl~e~~~~ 171 (200)
+|+|+|.+..
T Consensus 133 tVVL~E~~~~ 142 (199)
T 3bbo_U 133 TIVLRDITHF 142 (199)
T ss_dssp CCEEECCCCC
T ss_pred EEEEeeCCch
Confidence 9999998764
No 12
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=90.16 E-value=0.21 Score=41.69 Aligned_cols=24 Identities=42% Similarity=0.495 Sum_probs=20.8
Q ss_pred ccCCCccCCCCcceeeeeeeeccC
Q psy11361 131 RAHGNYRGLDTDRLVIEHIQVNPY 154 (200)
Q Consensus 131 RA~G~~~~~~~~~l~~~~~Ra~~~ 154 (200)
-|..+++|||+|+|+|+||.++.-
T Consensus 101 ~aNAe~kgLD~d~L~I~hi~Vnkg 124 (183)
T 4a17_Q 101 SANAQAKSLNTANLVIQHGQVNRA 124 (183)
T ss_dssp HHHTTTTTCCSTTEEEEEEEEEEC
T ss_pred HHHHHhcCCChhheEEEEEEECCC
Confidence 366788999999999999999874
No 13
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=85.32 E-value=0.44 Score=39.68 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=19.9
Q ss_pred cCCCccCCCCcceeeeeeeeccC
Q psy11361 132 AHGNYRGLDTDRLVIEHIQVNPY 154 (200)
Q Consensus 132 A~G~~~~~~~~~l~~~~~Ra~~~ 154 (200)
|..+++|||+|+|+|+||.++.-
T Consensus 100 aNAe~kgLD~d~L~I~~i~Vnkg 122 (184)
T 3u5e_P 100 ANAEAKGLDATKLYVSHIQVNQA 122 (184)
T ss_dssp HHHHHTTCCTTTEEEEEEEEEEC
T ss_pred HHHHHcCCChhheEEEEEEECCC
Confidence 55678899999999999999864
No 14
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=83.87 E-value=0.28 Score=40.38 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=20.2
Q ss_pred cCCCccCCCCcceeeeeeeeccCC
Q psy11361 132 AHGNYRGLDTDRLVIEHIQVNPYM 155 (200)
Q Consensus 132 A~G~~~~~~~~~l~~~~~Ra~~~~ 155 (200)
|..+++|||+|+|+|.||.++.-.
T Consensus 101 aNAe~kglD~d~L~I~~i~vnkgp 124 (171)
T 3iz5_V 101 SNAEVKGLDVDTLYVSHIQVNQAQ 124 (171)
T ss_dssp HHHHHHTCCSSCCEEEEEEEEECC
T ss_pred HHHHHcCCChhheEEEEEEeccCC
Confidence 556788999999999999998643
No 15
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.80 E-value=0.26 Score=39.85 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.2
Q ss_pred cCCCccCCCCcceeeeeeeecc
Q psy11361 132 AHGNYRGLDTDRLVIEHIQVNP 153 (200)
Q Consensus 132 A~G~~~~~~~~~l~~~~~Ra~~ 153 (200)
|..+++|||+|+|+|+||.++.
T Consensus 100 aNAe~kgld~d~L~I~~i~vnk 121 (155)
T 3j21_S 100 NNAVQKGLDPDKLKIIHIAAHK 121 (155)
T ss_dssp HHHHHHTCCGGGCEEEEEEEEE
T ss_pred HHHHHcCCChhheEEEEEEecC
Confidence 5567789999999999999886
No 16
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=80.99 E-value=0.45 Score=38.49 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=19.7
Q ss_pred ccCCCccCCCCcceeeeeeeecc
Q psy11361 131 RAHGNYRGLDTDRLVIEHIQVNP 153 (200)
Q Consensus 131 RA~G~~~~~~~~~l~~~~~Ra~~ 153 (200)
.|..+++|||+|+|+|.||.++.
T Consensus 97 ~aNAe~kgld~d~L~I~~i~v~k 119 (155)
T 1vq8_R 97 VGNADHQGFDGEAMTIKHVAAHK 119 (155)
T ss_dssp HHHHHHTTSCGGGSEEEEEEEEE
T ss_pred HHHHHHcCCChhheEEEEEEECC
Confidence 45567789999999999999986
No 17
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=80.05 E-value=0.91 Score=37.73 Aligned_cols=37 Identities=41% Similarity=0.558 Sum_probs=24.8
Q ss_pred ccCCCccCCCCcceeeeeeeeccCCCCCceEEEEEeeCcc
Q psy11361 131 RAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERER 170 (200)
Q Consensus 131 RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~HI~ivl~e~~~ 170 (200)
.|..+++|||+|+|+|.||.++.- +.--.+.......
T Consensus 99 ~aNAe~kglD~d~L~I~~i~Vnkg---~~~kR~~pRA~GR 135 (184)
T 2zkr_r 99 ESNAELKGLDVDSLVIEHIQVNKA---PKMRRRTYRAHGR 135 (184)
T ss_dssp HHHHHHHTSCTTTCEEEEEEEC-C---CCEEEEEEETTTE
T ss_pred HHHHHHcCCChhheEEEEEEECCC---ccCcCCCCCCCCC
Confidence 355577899999999999999863 3333444444443
No 18
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=72.76 E-value=6.8 Score=28.05 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=29.2
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHhccccccc
Q psy11361 27 KNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF 60 (200)
Q Consensus 27 Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf 60 (200)
+.+..++..+ |+++..|+.++-.=+.....+||
T Consensus 14 ~~a~~v~~~l-Gl~~s~Ai~~fl~~v~~~~~iPF 46 (79)
T 4fxe_A 14 ARSYAALEKM-GVTPSEALRLMLEYIADNERLPF 46 (79)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHHHhCCCCC
Confidence 3577888888 99999999998888888999999
No 19
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=62.94 E-value=2.9 Score=31.55 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.1
Q ss_pred Ccc-CCCCcceeeeeeeecc
Q psy11361 135 NYR-GLDTDRLVIEHIQVNP 153 (200)
Q Consensus 135 ~~~-~~~~~~l~~~~~Ra~~ 153 (200)
++. |||+|+|+|.|+.++.
T Consensus 59 e~~~gld~d~L~I~~~~v~~ 78 (110)
T 3r8s_S 59 EHNDGADIDDLKVTKIFVDE 78 (110)
T ss_dssp HHHSSCCTTSCEEEEEEEEE
T ss_pred HHhcCCChhheEEEEEEeCC
Confidence 344 7999999999999885
No 20
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=62.84 E-value=15 Score=28.05 Aligned_cols=70 Identities=6% Similarity=-0.059 Sum_probs=50.9
Q ss_pred ceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCCCCCchhhHHHHH
Q psy11361 13 KSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLL 92 (200)
Q Consensus 13 k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~GR~P~Kaa~~~l 92 (200)
..++-.+...-+|--=+-.++.+|.|+++++|..+..+-+..... | ++ --.++|..-.
T Consensus 55 ~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i~~~L~--l------------------~p--~r~~Ca~La~ 112 (129)
T 3lvl_A 55 EDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELE--L------------------PP--VKIHCSILAE 112 (129)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHHHHHHT--C------------------CG--GGGHHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHcC--C------------------Cc--cchhHHHHHH
Confidence 345556667777777888999999999999999887754432222 2 00 2247888889
Q ss_pred HHHHHHHHhhhh
Q psy11361 93 QLLKNAESNADY 104 (200)
Q Consensus 93 klLksA~aNA~~ 104 (200)
+.|+.|..+.+.
T Consensus 113 ~Al~~Al~~y~~ 124 (129)
T 3lvl_A 113 DAIKAAIADYKS 124 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 21
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=60.71 E-value=3.7 Score=32.30 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=16.3
Q ss_pred ccCCCCcceeeeeeeecc
Q psy11361 136 YRGLDTDRLVIEHIQVNP 153 (200)
Q Consensus 136 ~~~~~~~~l~~~~~Ra~~ 153 (200)
..|||+|+|+|.|+.++.
T Consensus 82 n~gld~d~L~I~~i~V~~ 99 (134)
T 2zjr_P 82 NDEMLEDRLFVKEAYVDA 99 (134)
T ss_dssp TTCCCGGGEEEEEEEEEE
T ss_pred hcCCChhheEEEEEEECC
Confidence 468999999999999987
No 22
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=56.69 E-value=4.3 Score=30.60 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=18.2
Q ss_pred cCCCcc-CCCCcceeeeeeeeccC
Q psy11361 132 AHGNYR-GLDTDRLVIEHIQVNPY 154 (200)
Q Consensus 132 A~G~~~-~~~~~~l~~~~~Ra~~~ 154 (200)
|..++. |||+|+|+|.|+.++.-
T Consensus 56 aNAe~n~gld~d~L~I~~~~v~~g 79 (110)
T 1i4j_A 56 ANAVNNHDALEDRLYVKAAYVDEG 79 (110)
T ss_dssp HHHHHTSCCCGGGEEEEEEEEEEE
T ss_pred HhHHHhcCCChhheEEEEEEECCC
Confidence 334454 79999999999999874
No 23
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=42.23 E-value=9.8 Score=32.02 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=19.0
Q ss_pred ccCCCc-cCCCCcceeeeeeeecc
Q psy11361 131 RAHGNY-RGLDTDRLVIEHIQVNP 153 (200)
Q Consensus 131 RA~G~~-~~~~~~~l~~~~~Ra~~ 153 (200)
.|..++ .|||+|+|+|.|+.++.
T Consensus 84 ~ANAe~n~GLD~d~L~I~~i~Vnk 107 (199)
T 3bbo_U 84 AANASHNKQFNKANLIISKAEVNK 107 (199)
T ss_dssp TTHHHHTSSCCSSSCEEEECCCCB
T ss_pred HHhHHhccCCChhheEEEEEEECC
Confidence 455566 68999999999999985
No 24
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=40.28 E-value=12 Score=28.05 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=17.8
Q ss_pred cCCCc-cCCC-Ccceeeeeeeecc
Q psy11361 132 AHGNY-RGLD-TDRLVIEHIQVNP 153 (200)
Q Consensus 132 A~G~~-~~~~-~~~l~~~~~Ra~~ 153 (200)
|..++ .||| +|+|+|.++.++.
T Consensus 52 aNA~~~~gld~~~~L~I~~~~v~~ 75 (110)
T 2ftc_M 52 DMAVRDHNVEFRSNLYIAESTSGR 75 (110)
T ss_pred HhHHHhcCCCCccCeEEEEEEECC
Confidence 34455 6899 7999999999886
No 25
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=35.83 E-value=51 Score=26.17 Aligned_cols=69 Identities=10% Similarity=0.144 Sum_probs=48.6
Q ss_pred eEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCCCCCchhhHHHHHH
Q psy11361 14 SCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQ 93 (200)
Q Consensus 14 ~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~GR~P~Kaa~~~lk 93 (200)
.++-.+...-+|--=+-.++.+|.|+++++|..+..+-|.. -| +++ ++ --.++|..-.+
T Consensus 50 D~~F~g~GCais~ASaS~mtelv~GKtleEA~~i~~~~i~~----~L----~gl-----------pp--~Ri~CA~La~~ 108 (153)
T 4eb5_C 50 DIKFQTFGCAAAIATSSMATEMAKGKTIEEALKITRDAVAE----AL----GGL-----------PK--QKMHCSNLAAD 108 (153)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTCCHHHHHH----HH----TCC-----------CT--TSHHHHHHHHH
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHhhHHHHHH----Hh----cCC-----------Cc--chhHHHHHHHH
Confidence 44555666677777888999999999999999775542211 11 111 11 33578999999
Q ss_pred HHHHHHHhhh
Q psy11361 94 LLKNAESNAD 103 (200)
Q Consensus 94 lLksA~aNA~ 103 (200)
.|+.|..+..
T Consensus 109 AL~~Al~~y~ 118 (153)
T 4eb5_C 109 ALRRAIVDYF 118 (153)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 26
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=33.68 E-value=1.5e+02 Score=22.61 Aligned_cols=38 Identities=5% Similarity=0.165 Sum_probs=30.6
Q ss_pred eEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHH
Q psy11361 14 SCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNV 51 (200)
Q Consensus 14 ~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~V 51 (200)
.++-.+...-+|--=+-.++.+|.|+++++|..+.+..
T Consensus 56 d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~ 93 (138)
T 2qq4_A 56 DIRFQGQGCAISTASASLMTEAVKGKKVAEALELSRKF 93 (138)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34455566677777788899999999999999998763
No 27
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=33.34 E-value=21 Score=24.12 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=12.6
Q ss_pred hcCCCHHHHHHHHHH
Q psy11361 36 ISKMPLRRAIKFLKN 50 (200)
Q Consensus 36 Irg~~l~~Ai~~L~~ 50 (200)
++=|+++||+.+|+-
T Consensus 10 ~kpmsveEAv~qmel 24 (57)
T 3k2t_A 10 LKPMDSEEAVLQMNL 24 (57)
T ss_dssp -CCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 567999999999993
No 28
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=32.95 E-value=24 Score=25.10 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=16.4
Q ss_pred hcCCCHHHHHHHHHHHHhc
Q psy11361 36 ISKMPLRRAIKFLKNVKDQ 54 (200)
Q Consensus 36 Irg~~l~~Ai~~L~~Vi~k 54 (200)
+.||++++|+..|...|+.
T Consensus 13 LHGl~v~eA~~~L~~~L~~ 31 (96)
T 2d9i_A 13 LHGLHVDEALEHLMRVLEK 31 (96)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4699999999999887764
No 29
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=32.70 E-value=46 Score=26.45 Aligned_cols=71 Identities=10% Similarity=0.043 Sum_probs=49.9
Q ss_pred ceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCCCCCchhhHHHHH
Q psy11361 13 KSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLL 92 (200)
Q Consensus 13 k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~GR~P~Kaa~~~l 92 (200)
..++-.+...-+|--=+-.++.+|.|+++++|..+..+-+.... + +-++. -.++|..-.
T Consensus 54 ~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~~~i~e~L--------g-----------~l~p~--R~~Ca~La~ 112 (157)
T 2z7e_A 54 EDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEEL--------G-----------GLPPQ--KIHCTNLGL 112 (157)
T ss_dssp EEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHH--------T-----------CCCCS--SCCTTCCHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHhccHHHHh--------c-----------ccCcc--hhHhHHHHH
Confidence 34566667778888888999999999999999998775332111 0 01122 256777888
Q ss_pred HHHHHHHHhhhh
Q psy11361 93 QLLKNAESNADY 104 (200)
Q Consensus 93 klLksA~aNA~~ 104 (200)
+.|+.|..++..
T Consensus 113 ~Al~~Al~~y~~ 124 (157)
T 2z7e_A 113 ETLHVAIKDYLM 124 (157)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889999888863
No 30
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=30.98 E-value=28 Score=24.04 Aligned_cols=20 Identities=15% Similarity=0.296 Sum_probs=16.6
Q ss_pred hcCCCHHHHHHHHHHHHhcc
Q psy11361 36 ISKMPLRRAIKFLKNVKDQL 55 (200)
Q Consensus 36 Irg~~l~~Ai~~L~~Vi~kk 55 (200)
+.||++++|+..|...|+.-
T Consensus 5 LHGl~v~eA~~~l~~~l~~~ 24 (82)
T 3fau_A 5 LHGLHVDEALEHLMRVLEKK 24 (82)
T ss_dssp CTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 46999999999998877653
No 31
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=28.91 E-value=1.4e+02 Score=23.52 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=49.1
Q ss_pred eEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHH---hccccccceeecCCCCcchhhcccCC-----CCCCCch
Q psy11361 14 SCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVK---DQLECVPFRRYNGGVGRCAQAKQWGT-----TQGRWPR 85 (200)
Q Consensus 14 ~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi---~kk~~VPf~ryn~gvgh~~~~~~~g~-----~~GR~P~ 85 (200)
.++-.+...-+|--=+-.++.+|.|+++++|..+.+... ..+...|- ..||- ....+|.
T Consensus 57 d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~f~~ml~~~~~~~~-------------~~L~~l~~l~gv~~~p~ 123 (159)
T 1su0_B 57 DIAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQ-------------KELGEAELLAGVAKFPQ 123 (159)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGG-------------GGGGGGGGGGGGGGCHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCCCCch-------------hhhchhhhhcCcccCcc
Confidence 455566777778788889999999999999999987622 11211110 11211 0112444
Q ss_pred --hhHHHHHHHHHHHHHhh
Q psy11361 86 --KSADFLLQLLKNAESNA 102 (200)
Q Consensus 86 --Kaa~~~lklLksA~aNA 102 (200)
++|..-.+.|+.|..+.
T Consensus 124 R~~Ca~La~~Al~~Al~~~ 142 (159)
T 1su0_B 124 RIKCSTLAWNALKEAIKRS 142 (159)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred hhHHHHHHHHHHHHHHHhh
Confidence 67888889999998764
No 32
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=28.20 E-value=28 Score=24.28 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=13.0
Q ss_pred hcCCCHHHHHHHHHH
Q psy11361 36 ISKMPLRRAIKFLKN 50 (200)
Q Consensus 36 Irg~~l~~Ai~~L~~ 50 (200)
++=|+++||+.+|+-
T Consensus 10 ~kpMsveEAv~qmel 24 (65)
T 3ka5_A 10 IKPMSEEEAVLEMEL 24 (65)
T ss_dssp CSCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 567999999999993
No 33
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=24.50 E-value=58 Score=24.78 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=16.5
Q ss_pred hcCCCHHHHHHHHHHHHhc
Q psy11361 36 ISKMPLRRAIKFLKNVKDQ 54 (200)
Q Consensus 36 Irg~~l~~Ai~~L~~Vi~k 54 (200)
+.||++++|+..|...|+.
T Consensus 58 LHGl~v~EA~~~L~~fL~~ 76 (135)
T 2vkc_A 58 LHGLHVDEALEHLMRVLEK 76 (135)
T ss_dssp CTTCCHHHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHHHHH
Confidence 5799999999999887765
No 34
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=22.91 E-value=48 Score=23.31 Aligned_cols=18 Identities=6% Similarity=0.167 Sum_probs=15.2
Q ss_pred hcCCCHHHHHHHHHHHHh
Q psy11361 36 ISKMPLRRAIKFLKNVKD 53 (200)
Q Consensus 36 Irg~~l~~Ai~~L~~Vi~ 53 (200)
++||++++|...|..-|+
T Consensus 9 LhG~~~~eA~~~l~~fl~ 26 (83)
T 2zqe_A 9 LRGLTVAEALLEVDQALE 26 (83)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 569999999999998554
No 35
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=22.09 E-value=27 Score=24.40 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=12.3
Q ss_pred hcCCCHHHHHHHHH
Q psy11361 36 ISKMPLRRAIKFLK 49 (200)
Q Consensus 36 Irg~~l~~Ai~~L~ 49 (200)
++=|+++||+.+|+
T Consensus 11 ~kpMsveEAv~qMe 24 (66)
T 3lyv_A 11 LKPMDVEEARLQME 24 (66)
T ss_dssp CCEECHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 45689999999999
Done!