RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11361
(200 letters)
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 225 bits (575), Expect = 5e-76
Identities = 130/197 (65%), Positives = 156/197 (79%), Gaps = 15/197 (7%)
Query: 1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF 60
M RYS +P NPTKSCK+RGSNLRVHFKNTRETA+ I M +R+A K+LK+V Q +CVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 61 RRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVN 120
RRYNGGVGRCAQAKQWG TQGRWP+KSA+FLL +LKNAESNA+ +GLD D LVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 121 RAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPREDEP 180
+AP++RRRTYRAHG ++NPYMSSPCHIE+IL+E+E++V KP E+
Sbjct: 121 KAPKMRRRTYRAHG---------------RINPYMSSPCHIEMILTEKEQIVPKPEEEVA 165
Query: 181 HKKKISKKKLARAKEKM 197
KKKIS+KKL + K
Sbjct: 166 QKKKISQKKLKKQKLMA 182
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 217 bits (555), Expect = 6e-73
Identities = 88/197 (44%), Positives = 123/197 (62%), Gaps = 15/197 (7%)
Query: 1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF 60
M RY NP KS ARGS LRV FKNTRETA+ I+ L +A K+L+ V D +PF
Sbjct: 1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPF 60
Query: 61 RRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVN 120
RR+N +GR AQ K++G T+ RWP KS F+ LL+NA +NA+ +GLD +L + HIQVN
Sbjct: 61 RRFNSSIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVN 120
Query: 121 RAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPREDEP 180
+AP+ RRRTYRAHG ++N Y SSP HIE++++E+E VAK E +
Sbjct: 121 QAPKQRRRTYRAHG---------------RINKYESSPSHIELVVTEKEEAVAKAAEKKV 165
Query: 181 HKKKISKKKLARAKEKM 197
+ ++ A++++
Sbjct: 166 VRLTSRQRGRIAAQKRI 182
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_V
Length = 171
Score = 216 bits (551), Expect = 2e-72
Identities = 104/185 (56%), Positives = 127/185 (68%), Gaps = 16/185 (8%)
Query: 1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF 60
M +YS+E NPTKS KA G +LRVHFKNTRETA I K+PL +A ++L++V + +PF
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 61 RRYNGGVGRCAQAKQW-GTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQV 119
RRY GGVGR AQAK QGRWP KSA F+L LLKNAESNA+ +GLD D L + HIQV
Sbjct: 61 RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQV 120
Query: 120 NRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPREDE 179
N+A + RRRTYRAHG ++NPYMSSPCHIE+ILSE+E V K E +
Sbjct: 121 NQAQKQRRRTYRAHG---------------RINPYMSSPCHIELILSEKEEPVKKEPESQ 165
Query: 180 PHKKK 184
+K
Sbjct: 166 IAARK 170
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 210 bits (536), Expect = 3e-70
Identities = 86/195 (44%), Positives = 113/195 (57%), Gaps = 17/195 (8%)
Query: 1 MGR--YSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECV 58
MG+ YS+EP N K+ K S+LRVHFKNT E + I + L A ++LK V D+ C+
Sbjct: 1 MGKTNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCI 60
Query: 59 PFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQ 118
PF R+ G +GR AQA ++G TQGRWP KS +L LL N +NA + L+T LVI+H Q
Sbjct: 61 PFTRFTGCIGRTAQAHEFGRTQGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQ 120
Query: 119 VNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPRED 178
VNRA + RRRTYRAHG ++NPY++S CH+E+ E V K
Sbjct: 121 VNRAQKGRRRTYRAHG---------------RINPYLNSGCHVEIFAQEVAAKVRKEAPK 165
Query: 179 EPHKKKISKKKLARA 193
+ KK KK A
Sbjct: 166 DAAKKVPKTKKGKLA 180
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R*
1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R*
1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R*
1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Length = 155
Score = 193 bits (493), Expect = 6e-64
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 1 MG-RYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVP 59
MG YS E +P + KA ++ FK+++ A+ I A+ +L+ V + + VP
Sbjct: 1 MGISYSVEA-DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVP 59
Query: 60 FRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQV 119
F+++N GVG ++ W GR+P K++ L LL+NA NAD++G D + + I+H+
Sbjct: 60 FKQHNSGVGHKSKVDGW--DAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAA 117
Query: 120 NRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERE 169
++ + R RA G + + + S +E+IL E E
Sbjct: 118 HKVGEQQGRKPRAMG---------------RASAWNSPQVDVELILEEPE 152
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA
binding, RNA binding protein; 1.80A {Thermus
thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s*
1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V
2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W
2wdj_W ...
Length = 110
Score = 47.1 bits (113), Expect = 1e-07
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 19/87 (21%)
Query: 84 PRKSADFLLQLLKNAESNADY-RGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTD 142
++ A F+ ++L++A +NA DRL ++ V+ P + RA G
Sbjct: 40 NKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVLP---RARG-------- 88
Query: 143 RLVIEHIQVNPYMSSPCHIEVILSERE 169
+ + HI VIL E+
Sbjct: 89 -------RADIIKKRTSHITVILGEKH 108
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S
2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S
2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Length = 110
Score = 46.3 bits (111), Expect = 2e-07
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 16/86 (18%)
Query: 84 PRKSADFLLQLLKNAESNADY-RGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTD 142
+K+A + ++L++A +NA++ G D D L + I V+ P ++R RA G R
Sbjct: 40 NKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKG--RA---- 93
Query: 143 RLVIEHIQVNPYMSSPCHIEVILSER 168
+ + HI V++S+R
Sbjct: 94 ---------DRILKRTSHITVVVSDR 110
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L*
1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q*
2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P*
1pnu_Q 1pny_Q 1vor_T ...
Length = 134
Score = 46.0 bits (110), Expect = 5e-07
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 84 PRKSADFLLQLLKNAESNADY-RGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTD 142
PR +++ + ++L +A++NA + + DRL ++ V+ P L+R RA G
Sbjct: 61 PRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARG-------- 112
Query: 143 RLVIEHIQVNPYMSSPCHIEVILSERE 169
N HI +I++E+
Sbjct: 113 -------SANIIKKRTSHITIIVAEKG 132
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 199
Score = 46.7 bits (111), Expect = 7e-07
Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 84 PRKSADFLLQLLKNAESNADY-RGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTD 142
P ++ + +L+ +A +NA + + + L+I +VN+ L++ RA G R
Sbjct: 69 PYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARG--RS---- 122
Query: 143 RLVIEHIQVNPYMSSPCHIEVILSER---ERVVAKPREDEPHKKKISKKKLARAKEK 196
+ CHI ++L + + P K ++ + +
Sbjct: 123 ---------YMILRPTCHITIVLRDITHFDSYDKFLESLTPKKLIALLGLMSTGRRR 170
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial
ribosome, large ribosomal subunit, ribosomal R ribosome;
12.10A {Bos taurus} PDB: 3iy9_M
Length = 110
Score = 41.7 bits (99), Expect = 1e-05
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 17/86 (19%)
Query: 84 PRKSADFLLQLLKNAESNADYR-GLD-TDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDT 141
+K A + ++L A+ A ++ L I R L+R Y G
Sbjct: 36 DKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRG------- 88
Query: 142 DRLVIEHIQVNPYMSSPCHIEVILSE 167
+ CH V L E
Sbjct: 89 --------RFGIMEKVYCHYFVKLVE 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 3e-04
Identities = 32/208 (15%), Positives = 70/208 (33%), Gaps = 74/208 (35%)
Query: 14 SCKARG---SNLRVHFKNTRE------TAKTISKMPLRRAIKFLKNVKDQLECVPFRRYN 64
+ K G LR + K TA I++ + F +V+ + + F
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES--FFVSVRKAITVL-FF--- 305
Query: 65 GGVG-RCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAP 123
+G RC +A +P S +L+++ N + G+ + L I
Sbjct: 306 --IGVRCYEA---------YPNTSLP--PSILEDSLENNE--GVPSPMLSI--------- 341
Query: 124 RLRRRTYRAHGNYRGLDTDRLVIEHI-QVNPYMSSPCHIEVIL--SERERVVAKPRED-- 178
L +++ +++ + N ++ + +E+ L + VV+ P +
Sbjct: 342 -------------SNLTQEQV-QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 179 ---------------EPHKKKISKKKLA 191
+ + S++KL
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLK 415
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics,
parasitology, structural genomics consortium, SGC,
ATP-binding, nucleotide-binding; HET: ANP; 2.55A
{Toxoplasma gondii}
Length = 285
Score = 26.0 bits (58), Expect = 8.8
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 183 KKISKKKLARAKEKMLRE 200
K I+K + E++ E
Sbjct: 53 KTINKDRSQVPMEQIEAE 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.398
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,024,933
Number of extensions: 172534
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 19
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)