RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11361
         (200 letters)



>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score =  148 bits (376), Expect = 8e-47
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 18/165 (10%)

Query: 3   RYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRR 62
            YS E  +P  + KA     ++ FK+++  A+ I       A+ +L+ V +  + VPF++
Sbjct: 3   SYSVEA-DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQ 61

Query: 63  YNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRA 122
           +N GVG  ++   W    GR+P K++   L LL+NA  NAD++G D + + I+H+  ++ 
Sbjct: 62  HNSGVGHKSKVDGWD--AGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKV 119

Query: 123 PRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSE 167
              + R  RA G               + + + S    +E+IL E
Sbjct: 120 GEQQGRKPRAMG---------------RASAWNSPQVDVELILEE 149


>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli
           [TaxId: 562]}
          Length = 106

 Score = 53.6 bits (129), Expect = 2e-10
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 48/153 (31%)

Query: 17  ARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQW 76
           A+  + R   +  R  A  I    + +A+  L                            
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILT--------------------------- 33

Query: 77  GTTQGRWPRKSADFLLQLLKNAESNADYR-GLDTDRLVIEHIQVNRAPRLRRRTYRAHGN 135
                   +K+A  + ++L++A +NA++  G D D L +  I V+  P ++R   RA G 
Sbjct: 34  -----YTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKG- 87

Query: 136 YRGLDTDRLVIEHIQVNPYMSSPCHIEVILSER 168
                         + +  +    HI V++S+R
Sbjct: 88  --------------RADRILKRTSHITVVVSDR 106


>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 127

 Score = 50.2 bits (120), Expect = 5e-09
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 48/168 (28%)

Query: 3   RYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRR 62
           +  K+     K   A    +R+  +  R     I    ++ A   L+             
Sbjct: 5   KQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRF------------ 52

Query: 63  YNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYR-GLDTDRLVIEHIQVNR 121
                                PR +++ + ++L +A++NA +   +  DRL ++   V+ 
Sbjct: 53  --------------------IPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDA 92

Query: 122 APRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERE 169
            P L+R   RA G                 N       HI +I++E+ 
Sbjct: 93  GPTLKRLIPRARG---------------SANIIKKRTSHITIIVAEKG 125


>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus,
           subsp. Thermus thermophilus [TaxId: 271]}
          Length = 110

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 51/155 (32%)

Query: 16  KARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQ 75
           KA    +R+  +  R     I    L  A   L+                          
Sbjct: 4   KAIARYVRISPRKVRLVVDLIRGKSLEEARNILRY------------------------- 38

Query: 76  WGTTQGRWPRKSADFLLQLLKNAESNA-DYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHG 134
                    ++ A F+ ++L++A +NA +      DRL ++   V+  P +  R   A G
Sbjct: 39  -------TNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVLPR---ARG 88

Query: 135 NYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERE 169
                          + +       HI VIL E+ 
Sbjct: 89  ---------------RADIIKKRTSHITVILGEKH 108


>d2rh7a1 d.22.1.1 (A:7-226) Green fluorescent protein, GFP {Renilla
           reniformis [TaxId: 6136]}
          Length = 220

 Score = 26.2 bits (58), Expect = 2.4
 Identities = 5/22 (22%), Positives = 10/22 (45%)

Query: 19  GSNLRVHFKNTRETAKTISKMP 40
           G +   H +   ++ K +  MP
Sbjct: 164 GKHFTYHMRTVYKSKKPVETMP 185


>d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide
           phosphorylase/guanosine pentaphosphate synthase
           (PNPase/GPSI), domains 2 and 5 {Streptomyces
           antibioticus [TaxId: 1890]}
          Length = 96

 Score = 24.3 bits (53), Expect = 5.5
 Identities = 5/18 (27%), Positives = 7/18 (38%)

Query: 164 ILSERERVVAKPREDEPH 181
           IL      +  P E  P+
Sbjct: 79  ILDVMMEAIDTPDEMSPN 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 734,036
Number of extensions: 32711
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 9
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)