RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11364
(101 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 36.6 bits (85), Expect = 9e-05
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 55 TCFVCGKQLSNQYNLRVHMETHQNAF----YACSSCSHVSRSRDALRKH 99
C +CG + +L H H + C C D++ H
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Score = 28.9 bits (65), Expect = 0.078
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C CGK+ ++ H
Sbjct: 40 PCEFCGKRFEKPDSVAAHRSKS 61
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.1 bits (77), Expect = 0.004
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 17 SDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFA-TCFVCGKQLSNQYNLRVHMET 75
+ +S + G S C VC L + +L H+ +
Sbjct: 143 GGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS 202
Query: 76 H 76
H
Sbjct: 203 H 203
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 32.1 bits (74), Expect = 0.005
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 55 TCFVCGKQLSNQYNLRVHMETHQNAF---YACSSCSHVSRSRDALRKH 99
C++C + + +++H+ + C C V + L H
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 26.7 bits (60), Expect = 0.52
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C C ++ + +L VH+
Sbjct: 47 HCPHCDTVIARKSDLGVHLRKQ 68
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 32.1 bits (74), Expect = 0.006
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 7/52 (13%)
Query: 55 TCFVCGKQLSNQYNLRVHMETHQNAFYACSSC-------SHVSRSRDALRKH 99
C +CG++ + + H + H+ L+K
Sbjct: 33 ACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 29.0 bits (66), Expect = 0.090
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 55 TCFVCGKQLSNQYNLRVHMETHQNAF-YACSSCSHVSRSRDALRKH 99
C +C + S +L H+ TH +AC C D ++H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 33.0 bits (74), Expect = 0.006
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 55 TCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKH 99
C +C S+ +L+ H+ ++ C C S D+ H
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTEHT-KVCPVCKKEFTSTDSALDH 119
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 30.8 bits (69), Expect = 0.010
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 55 TCFVCGKQLSNQYNLRVHMETHQNAF-YACSSCSHVSRSRDALRKHDK 101
C CG + L+ H+ TH + Y C+ C+ +++ L KH K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 29.8 bits (68), Expect = 0.021
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C +CG + + L+ H+ H
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIH 34
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 28.7 bits (64), Expect = 0.060
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 59 CGKQLSNQYNLRVHMETH 76
C K +YN+R H++TH
Sbjct: 26 CTKTFKRRYNIRSHIQTH 43
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 27.9 bits (63), Expect = 0.18
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 55 TCFVCGKQLSNQYNLRVHMETHQNAF---YACSSCSHVSRSRDALRKHDK 101
C VC + ++ N H T Y C C +D + H K
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 27.5 bits (62), Expect = 0.25
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C C K+ + + N+ H++
Sbjct: 42 PCPFCFKEFTRKDNMTAHVKII 63
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 28.6 bits (65), Expect = 0.20
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 59 CGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKH 99
C K + +R H+ TH + C+ C L++H
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRH 53
Score = 27.1 bits (61), Expect = 0.69
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C CGK L+ H H
Sbjct: 36 VCAECGKAFVESSKLKRHQLVH 57
Score = 26.3 bits (59), Expect = 1.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 59 CGKQLSNQYNLRVHMETH 76
CGK+ S +NLR H+ H
Sbjct: 70 CGKRFSLDFNLRTHVRIH 87
Score = 25.2 bits (56), Expect = 3.2
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 59 CGKQLSNQYNLRVHMETH 76
C K+ + NL+ H+ TH
Sbjct: 100 CNKKFAQSTNLKSHILTH 117
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 28.2 bits (64), Expect = 0.22
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C +CG++ + + H + H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 27.8 bits (63), Expect = 0.22
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C +C + S +L H+ TH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTH 57
Score = 25.9 bits (58), Expect = 1.3
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 59 CGKQLSNQYNLRVHMETH 76
C ++ S +L H+ H
Sbjct: 12 CDRRFSQSGSLTRHIRIH 29
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 28.3 bits (62), Expect = 0.26
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 38 SGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALR 97
SG++G S +K C +C +LS+ H +NA C CS S + +
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAA-VCPYCSLRFFSPELKQ 59
Query: 98 KHD 100
+H+
Sbjct: 60 EHE 62
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 0.28
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 6/59 (10%)
Query: 35 TKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSR 93
T+ S G + + TC C + +E C+ C V +
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECK---VYPPKI---VERFSEGDVVCALCGLVLSDK 55
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 28.3 bits (64), Expect = 0.28
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C C ++ S +L+ H TH
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTH 89
Score = 26.3 bits (59), Expect = 1.3
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 59 CGKQLSNQYNLRVHMETHQNAF-YACSSCSHVSRSRDALRKH 99
C ++ S L+ H H + C +C D L+ H
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Score = 25.9 bits (58), Expect = 1.5
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 59 CGKQLSNQYNLRVHMETH 76
C K+ +L++H H
Sbjct: 14 CNKRYFKLSHLQMHSRKH 31
Score = 25.9 bits (58), Expect = 1.8
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 59 CGKQLSNQYNLRVHMETH 76
C K+ + L H H
Sbjct: 102 CQKKFARSDELVRHHNMH 119
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.7 bits (60), Expect = 0.30
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C CG + +LR H+ H
Sbjct: 14 CETCGARFVQVAHLRAHVLIH 34
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 28.4 bits (64), Expect = 0.31
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C + S + L H+
Sbjct: 27 PKKSCDRTFSTMHELVTHVTME 48
Score = 28.0 bits (63), Expect = 0.37
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 47 SNHSKLFATCFVCGKQLSNQYNLRVHMETH 76
+NH + C GK +Y L H+ H
Sbjct: 56 NNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Score = 25.7 bits (57), Expect = 2.5
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 59 CGKQLSNQYNLRVHMETH 76
C ++ +N + + HM H
Sbjct: 128 CDRRFANSSDRKKHMHVH 145
Score = 24.6 bits (54), Expect = 7.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 59 CGKQLSNQYNLRVHMETH 76
CGK + NL++H TH
Sbjct: 98 CGKIFARSENLKIHKRTH 115
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 27.1 bits (61), Expect = 0.31
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 56 CFVCGKQLSNQYNLRVHMETHQNAF-YACSSCSHVSRSRDALRKH 99
C C S++ LR+H H + C+ CS ++ L KH
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 24.0 bits (53), Expect = 4.9
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C C NL HM+
Sbjct: 39 KCNYCSFDTKQPSNLSKHMKKF 60
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 26.8 bits (59), Expect = 0.31
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 41 GTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAF-YACSSCS 87
G++G S K A C +CGK + Y+L H +H Y+ S
Sbjct: 1 GSSGSSGRTRKQVA-CEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 27.6 bits (62), Expect = 0.53
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C + QY L VHM H
Sbjct: 42 CSRELRPFKAQYMLVVHMRRH 62
Score = 26.4 bits (59), Expect = 1.6
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 59 CGKQLSNQYNLRVHMETH 76
C K+ ++ +LR H++T
Sbjct: 136 CTKRYTDPSSLRKHVKTV 153
Score = 26.0 bits (58), Expect = 1.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 59 CGKQLSNQYNLRVHMETH 76
C K S NL+ H+ +H
Sbjct: 75 CRKSYSRLENLKTHLRSH 92
Score = 25.6 bits (57), Expect = 2.7
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C ++ +Q L H+ +
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSE 26
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 26.7 bits (60), Expect = 0.67
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH---QNAFYACSSCSHVSRSRDALRKHDK 101
+C VCG + + + H+ +H Y C SC D L H K
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 25.5 bits (57), Expect = 2.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C +CGK + Y+L H +H
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSH 30
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 26.4 bits (59), Expect = 0.70
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 59 CGKQLSNQYNLRVHMETHQ-NAFYACSSCSHVSRSRDALRKH 99
C K+ S L+ H + H SCS V ++ KH
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 80
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 26.0 bits (56), Expect = 0.74
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 30 PGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHME 74
P + + K S + S+ ATC +C + NLR H+E
Sbjct: 1 PKAKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLE 45
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 26.8 bits (60), Expect = 0.77
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 55 TCFVCGKQLSNQYNLRVHMETHQN 78
C VC + S +L +HM+ HQN
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRHQN 100
Score = 25.3 bits (56), Expect = 2.7
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 59 CGKQLSNQYNLRVHMETHQNAF-YACSSCSHV-SRSRDALRKHDK 101
C + + L H H A + C C+ SRS D L H K
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRS-DHLALHMK 96
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 25.9 bits (58), Expect = 1.1
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH-----QNAFYACSSCSHVSRSRDALRKH 99
C C K + L +H + + A + CS C R+ + +H
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 24.0 bits (53), Expect = 6.7
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C CGK + + + H +
Sbjct: 49 VCSKCGKTFTRRNTMARHADNC 70
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 26.3 bits (59), Expect = 1.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 55 TCFVCGKQLSNQYNLRVHMETHQNAF-YACSSCSHVSRSRDALRKH 99
TC VC + + LR+HM +H Y CSSCS + L+ H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 25.9 bits (58), Expect = 1.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C C K+ ++Y L+VH H
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKH 30
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 26.7 bits (58), Expect = 1.5
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 22 TSPLSSSIPGSSKTKASGSG-----TTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMET 75
T P S SI + + + + + C VC + S L H+ +
Sbjct: 80 TRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRS 138
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 26.4 bits (59), Expect = 1.6
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 59 CGKQLSNQYNLRVHMETHQ-NAFYACSSCSHVSRSRDALRKH 99
C K+ S L+ H + H SCS V ++ KH
Sbjct: 142 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 183
Score = 24.5 bits (54), Expect = 7.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 59 CGKQLSNQYNLRVHMETH 76
C K ++ ++L H TH
Sbjct: 50 CEKGFTSLHHLTRHSLTH 67
Score = 24.1 bits (53), Expect = 9.5
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 59 CGKQLSNQYNLRVHMETH 76
C + + + N++ H
Sbjct: 80 CDLRFTTKANMKKHFNRF 97
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.4 bits (54), Expect = 2.1
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 45 GSSNHS--KLFATCFVCGKQLSNQYNLRVHMETH 76
GSS S K F C C K S++ L VH +TH
Sbjct: 1 GSSGSSGEKPFG-CSCCEKAFSSKSYLLVHQQTH 33
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 25.1 bits (56), Expect = 2.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C VCGK S + L+ HM H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCH 31
Score = 24.7 bits (55), Expect = 4.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C +C N L VH+ +H
Sbjct: 67 CQICPYASRNSSQLTVHLRSH 87
Score = 24.3 bits (54), Expect = 6.2
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 56 CFVCGKQLSNQYNLRVHMETH-QNAFYACSSCSHVSRSRDALRKH 99
C C ++ +L H+ H + C C + SR+ L H
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 24.7 bits (55), Expect = 2.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C +CG Q + NL+ H H
Sbjct: 48 CNICGAQFNRPANLKTHTRIH 68
Score = 23.6 bits (52), Expect = 6.9
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C C + NL H H
Sbjct: 20 CDRCQASFRYKGNLASHKTVH 40
>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 111
Score = 25.2 bits (55), Expect = 2.8
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 23 SPLSSSIPGSSKTKASGSGTTGGSSNHSKLF 53
S SS S A G G + G N F
Sbjct: 2 SSGSSGAINSRHVSAYGPGLSHGMVNKPATF 32
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.1 bits (53), Expect = 2.8
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C CG S +L H+ +H
Sbjct: 15 CKECGMNFSWSCSLFKHLRSH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 24.2 bits (53), Expect = 2.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C CGK + + +L VH +
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSC 34
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 25.1 bits (54), Expect = 3.2
Identities = 9/52 (17%), Positives = 16/52 (30%)
Query: 26 SSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQ 77
++ P S ++ C CG + +L VHM +
Sbjct: 53 DNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 24.7 bits (53), Expect = 3.8
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 55 TCFVCGKQLSNQYNLRVHMET-----HQNAFYACSSCSHVSRSRDALRKHDK 101
C C Q + H+++ N+ Y C C+ +++ DAL +H+
Sbjct: 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNL 71
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.5 bits (50), Expect = 4.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 45 GSSNHSKLFATCFVCGKQLSNQYNLRVHMETH 76
GSS S L C +C ++ N+ + HM H
Sbjct: 1 GSSGSSGLLYDCHICERKFKNELDRDRHMLVH 32
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 23.7 bits (52), Expect = 4.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C CGK S + +L VH+ H
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVH 34
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 24.5 bits (53), Expect = 4.7
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C GK +Y L H+ H
Sbjct: 65 CPREGKSFKAKYKLVNHIRVH 85
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C CGK + + L +H ++H
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSH 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 5.6
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 5 YKR---STLHFLISVSDHCLTSP 24
Y+R + L FL + ++ + S
Sbjct: 541 YERLVNAILDFLPKIEENLICSK 563
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 23.2 bits (51), Expect = 6.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C C K + + NL VH TH
Sbjct: 15 CNECQKAFNTKSNLMVHQRTH 35
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 24.9 bits (55), Expect = 6.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 20 CLTSPLSSSIPGSSKTKASGSGTTGG 45
LT P S S P S +T+A + +
Sbjct: 132 GLTEPNSGSDPSSMETRAHYNSSNKS 157
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 23.8 bits (52), Expect = 6.7
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
C +C + S +L H+ TH
Sbjct: 51 QCRICMRNFSRSDHLTTHIRTH 72
Score = 23.4 bits (51), Expect = 8.3
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 59 CGKQLSNQYNLRVHMETHQNAF-YACSSCSHV-SRSRDALRKHDK 101
C ++ S L H+ H + C C SRS D L H +
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS-DHLTTHIR 70
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 24.7 bits (53), Expect = 7.0
Identities = 8/82 (9%), Positives = 18/82 (21%), Gaps = 1/82 (1%)
Query: 8 STLHFLISVSDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQY 67
T + + + S G + + ++ +
Sbjct: 60 VTYYLSLKLLGGKKKKKKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKVSLQQKGCPKC 119
Query: 68 NLRVHMETHQNAFYACSSCSHV 89
+ M H + Y C C
Sbjct: 120 GPGIFMAKHYDRHY-CGKCHLT 140
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 23.9 bits (53), Expect = 7.6
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 56 CFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKH 99
C CG+ + YNL +H TH + Y C C R +D LR H
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 22.9 bits (50), Expect = 7.7
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C C K S + L VH H
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMH 35
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 23.7 bits (52), Expect = 7.9
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 59 CGKQLSNQYNLRVHMETH 76
CGK + + +L+ HM+ H
Sbjct: 46 CGKSFNFKKHLKEHMKLH 63
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 8.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C CGK + + NL +H H
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVH 35
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc
binding, structural genomics, PSI; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Length = 55
Score = 23.1 bits (50), Expect = 8.9
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 56 CFVCGKQLSNQYN 68
C CGK +S +N
Sbjct: 6 CLSCGKPVSAYFN 18
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB:
1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z*
1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z*
1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Length = 83
Score = 23.6 bits (51), Expect = 9.1
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 73 METHQNAFYACSSCSHVSRSRDA 95
+E+ N +AC +C R
Sbjct: 20 IESEMNEDHACPNCGEDRVDRQG 42
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 22.8 bits (50), Expect = 9.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 56 CFVCGKQLSNQYNLRVHMETH 76
C CGK ++ L +H TH
Sbjct: 15 CNECGKAFRSKSYLIIHTRTH 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.125 0.376
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,333,288
Number of extensions: 58019
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 203
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)