RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11364
         (101 letters)



>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 33

 Score = 26.4 bits (59), Expect = 0.11
 Identities = 8/22 (36%), Positives = 8/22 (36%)

Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
           C  CGK  S    L  H   H
Sbjct: 9  GCVECGKAFSRSSILVQHQRVH 30


>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
          Saccharomyces cerevisiae sequence}
          Length = 29

 Score = 26.0 bits (58), Expect = 0.14
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 56 CFVCGKQLSNQYNLRVHMETH 76
          C VC +  + Q +L+ H  +H
Sbjct: 5  CEVCTRAFARQEHLKRHYRSH 25


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 26.2 bits (58), Expect = 0.15
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 56 CFVCGKQLSNQYNLRVHMETHQNAFY 81
          C  C K    +  L +H + + +  +
Sbjct: 11 CSHCDKTFRQKQLLDMHFKRYHDPNF 36


>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 29

 Score = 26.2 bits (58), Expect = 0.17
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
           C  C K+     +L  H++TH
Sbjct: 4  ACPECPKRFMRSDHLSKHIKTH 25


>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 28

 Score = 25.6 bits (57), Expect = 0.20
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 56 CFVCGKQLSNQYNLRVHMETH 76
          C +C +  S   +L  H+ TH
Sbjct: 6  CRICMRNFSRSDHLTTHIRTH 26


>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 53

 Score = 25.0 bits (54), Expect = 0.57
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
           C VCGK+   +++L  HM+ H
Sbjct: 32 GCGVCGKKFKMKHHLVGHMKIH 53



 Score = 25.0 bits (54), Expect = 0.67
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 59 CGKQLSNQYNLRVHM-ETHQNAFYACSSCSHVSRSRDALRKH 99
          CGK  +++     HM        Y C  C    + +  L  H
Sbjct: 8  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49


>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 31

 Score = 23.8 bits (52), Expect = 0.95
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 59 CGKQLSNQYNLRVHMETH 76
          CGK+ +    L+ H  TH
Sbjct: 10 CGKRFTRSDELQRHKRTH 27


>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 23.9 bits (52), Expect = 1.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
              CGK  + + +L+ HM+ H
Sbjct: 5  PEPACGKSFNFKKHLKEHMKLH 26


>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster
          [TaxId: 7227]}
          Length = 54

 Score = 24.3 bits (52), Expect = 1.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 46 SSNHSKLFATCFVCGKQLSNQYNLRVHME 74
          S + S+  ATC +C   +    NLR H+E
Sbjct: 17 SRSQSEQPATCPICYAVIRQSRNLRRHLE 45


>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 35

 Score = 23.6 bits (51), Expect = 1.4
 Identities = 5/24 (20%), Positives = 11/24 (45%)

Query: 56 CFVCGKQLSNQYNLRVHMETHQNA 79
          C +C    + + N   H++ H + 
Sbjct: 10 CRICLSAFTTKANCARHLKVHTDT 33


>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 30

 Score = 23.4 bits (51), Expect = 1.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 59 CGKQLSNQYNLRVHMETH 76
          C K  S   NL+ H+ +H
Sbjct: 10 CRKSYSRLENLKTHLRSH 27


>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 39

 Score = 23.4 bits (51), Expect = 1.8
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 55 TCFVCGKQLSNQYNLRVHM 73
           C  CGK  S   +L  H+
Sbjct: 7  ICQSCGKGFSRPDHLNGHI 25


>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 23.9 bits (52), Expect = 2.0
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 56 CFVCGKQLSNQYNLRVHMET 75
          C  C +   +  NL+ H  +
Sbjct: 18 CLACARYFIDSTNLKTHFRS 37


>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 37

 Score = 23.2 bits (50), Expect = 2.3
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 56 CFVCGKQLSNQYNLRVHMETH 76
          C  C +  S   +L +H + H
Sbjct: 14 CPDCDRSFSRSDHLALHRKRH 34


>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 23.0 bits (50), Expect = 2.4
 Identities = 3/22 (13%), Positives = 11/22 (50%)

Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
           C++C  + +    +++H+   
Sbjct: 10 ECYICHARFTQSGTMKMHILQK 31


>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 30

 Score = 22.8 bits (48), Expect = 2.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
          TC VC +    +  LR+HM +H
Sbjct: 6  TCSVCQETFRRRMELRLHMVSH 27


>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 32

 Score = 22.7 bits (49), Expect = 2.8
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 59 CGKQLSNQYNLRVHMETH 76
          C K     ++L  H ++H
Sbjct: 11 CDKAFVRNHDLIRHKKSH 28


>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
          domain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 22.7 bits (49), Expect = 2.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 59 CGKQLSNQYNLRVHMETH 76
          C K+ +   NL+ H+ TH
Sbjct: 10 CNKKFAQSTNLKSHILTH 27


>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic
           domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 287

 Score = 24.0 bits (52), Expect = 4.2
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 22  TSPLSSS-IPGSSKTKASGSGTTGGSSNH-SKLFATCFVCGKQ-LSNQYNLRVHMETHQN 78
               S++ IP         +   GG+      +   CF    +   N    + H E+H N
Sbjct: 181 RRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDESHLN 240

Query: 79  AFYACSSCSHV 89
            ++  +  + +
Sbjct: 241 KYFLLNKPTKI 251


>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 55

 Score = 22.6 bits (49), Expect = 4.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 56 CFVCGKQLSNQYN 68
          C  CGK +S  +N
Sbjct: 6  CLSCGKPVSAYFN 18


>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 29

 Score = 21.9 bits (47), Expect = 5.1
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 59 CGKQLSNQYNLRVHMETH 76
          C ++ S   +L  H+  H
Sbjct: 10 CDRRFSRSADLTRHIRIH 27


>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 92

 Score = 23.0 bits (49), Expect = 6.6
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)

Query: 31 GSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVS 90
          G+ K +A G G     +      A   +  ++      L + +E    A  +       S
Sbjct: 1  GAHKVRAGGPGLERAEAGVP---AEFSIWTREAGAG-GLAIAVEGPSKAEISFEDRKDGS 56


>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 26

 Score = 21.6 bits (45), Expect = 6.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 56 CFVCGKQLSNQYNLRVHMETH 76
          C VCGK  S +  L+ HM  H
Sbjct: 4  CEVCGKCFSRKDKLKTHMRCH 24


>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 26

 Score = 21.8 bits (47), Expect = 6.7
 Identities = 8/21 (38%), Positives = 8/21 (38%)

Query: 56 CFVCGKQLSNQYNLRVHMETH 76
          C  CGK  S    L  H   H
Sbjct: 5  CLECGKAFSQNSGLINHQRIH 25


>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 47

 Score = 22.2 bits (47), Expect = 6.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 55 TCFVCGKQLSNQYNLRVHMETH 76
              C K    +YN+R H++TH
Sbjct: 22 LFPGCTKTFKRRYNIRSHIQTH 43


>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 65

 Score = 22.3 bits (48), Expect = 7.0
 Identities = 5/13 (38%), Positives = 9/13 (69%)

Query: 56 CFVCGKQLSNQYN 68
          CF CGK + +++ 
Sbjct: 7  CFSCGKVVGDKWE 19


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.125    0.376 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 333,360
Number of extensions: 11893
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 47
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)