BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11365
         (95 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
 pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
          Length = 138

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 34/56 (60%)

Query: 38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFEVRPK 93
          +LLV+SSR P+ WI               A+REV EEAGV GKLGR LG+FE + +
Sbjct: 26 VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFENQDR 81


>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol
          Polyphosphate Phosphohydrolase 3-Alpha
 pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol
          Polyphosphate Phosphohydrolase 3-Alpha
          Length = 136

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 32/52 (61%)

Query: 38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFE 89
          +LLV+SSR P+ WI               A+REV EEAGV GKLGR LGVFE
Sbjct: 18 VLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGVFE 69


>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
 pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
           Mg-F Complex
          Length = 194

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%)

Query: 38  ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFEVRPK 93
           +LLV+SSR P+ WI            +  A+REV EEAGV G LGR +G+FE + +
Sbjct: 56  VLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQER 111


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,222,047
Number of Sequences: 62578
Number of extensions: 49451
Number of successful extensions: 93
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 4
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)