Query psy11365
Match_columns 95
No_of_seqs 191 out of 1370
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 16:31:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1051 ADP-ribose pyrophospha 99.9 1.9E-21 4E-26 124.2 9.3 74 22-95 7-82 (145)
2 PLN02325 nudix hydrolase 99.8 1.4E-19 3.1E-24 115.1 9.7 72 21-92 5-78 (144)
3 cd04684 Nudix_Hydrolase_25 Con 99.8 1.5E-19 3.3E-24 111.3 7.5 63 28-90 3-67 (128)
4 cd04679 Nudix_Hydrolase_20 Mem 99.8 1E-18 2.2E-23 108.0 9.7 67 26-92 3-72 (125)
5 cd03430 GDPMH GDP-mannose glyc 99.8 1E-18 2.2E-23 111.1 9.0 65 25-89 12-81 (144)
6 cd04689 Nudix_Hydrolase_30 Mem 99.8 1.5E-18 3.2E-23 107.3 9.1 64 26-90 2-65 (125)
7 cd04673 Nudix_Hydrolase_15 Mem 99.8 1E-18 2.3E-23 106.9 8.3 65 28-92 3-69 (122)
8 cd04511 Nudix_Hydrolase_4 Memb 99.8 2.9E-18 6.4E-23 106.9 10.4 70 22-91 10-81 (130)
9 cd04669 Nudix_Hydrolase_11 Mem 99.8 1.6E-18 3.5E-23 107.1 9.0 62 29-90 4-67 (121)
10 cd04691 Nudix_Hydrolase_32 Mem 99.8 2E-18 4.4E-23 106.0 9.2 63 28-90 3-69 (117)
11 cd04696 Nudix_Hydrolase_37 Mem 99.8 1.7E-18 3.7E-23 107.1 8.7 61 27-87 4-65 (125)
12 cd04683 Nudix_Hydrolase_24 Mem 99.8 1.5E-18 3.3E-23 106.4 8.2 63 28-90 3-70 (120)
13 cd03427 MTH1 MutT homolog-1 (M 99.8 3.3E-18 7.2E-23 106.9 9.4 64 28-91 4-69 (137)
14 PRK15434 GDP-mannose mannosyl 99.8 4.1E-18 8.9E-23 110.3 9.8 64 25-88 17-85 (159)
15 cd03675 Nudix_Hydrolase_2 Cont 99.8 3E-18 6.5E-23 106.9 8.6 64 27-90 2-66 (134)
16 cd04700 DR1025_like DR1025 fro 99.8 5.5E-18 1.2E-22 107.4 9.7 70 20-89 8-80 (142)
17 cd04687 Nudix_Hydrolase_28 Mem 99.8 4.5E-18 9.8E-23 105.5 9.0 64 27-90 3-67 (128)
18 cd04672 Nudix_Hydrolase_14 Mem 99.8 5.3E-18 1.1E-22 104.7 9.2 64 26-90 3-66 (123)
19 PRK09438 nudB dihydroneopterin 99.8 3.4E-18 7.5E-23 108.6 8.4 53 27-79 9-62 (148)
20 cd04677 Nudix_Hydrolase_18 Mem 99.8 7.1E-18 1.5E-22 104.7 8.8 64 25-89 7-71 (132)
21 cd03673 Ap6A_hydrolase Diadeno 99.8 4.3E-18 9.3E-23 105.2 7.5 55 36-91 16-70 (131)
22 cd04688 Nudix_Hydrolase_29 Mem 99.8 8.2E-18 1.8E-22 104.0 8.7 61 28-89 4-64 (126)
23 PRK15472 nucleoside triphospha 99.8 7E-18 1.5E-22 106.4 8.2 55 26-80 5-63 (141)
24 cd04690 Nudix_Hydrolase_31 Mem 99.8 1.3E-17 2.8E-22 101.8 9.1 63 28-91 4-68 (118)
25 cd04678 Nudix_Hydrolase_19 Mem 99.7 1.2E-17 2.5E-22 103.6 8.7 65 26-90 3-70 (129)
26 cd04686 Nudix_Hydrolase_27 Mem 99.7 1.5E-17 3.2E-22 104.0 9.2 61 28-89 3-64 (131)
27 cd04671 Nudix_Hydrolase_13 Mem 99.7 1.9E-17 4.2E-22 102.8 9.5 60 29-88 4-66 (123)
28 cd04682 Nudix_Hydrolase_23 Mem 99.7 1.2E-17 2.6E-22 103.0 7.9 54 28-81 4-62 (122)
29 cd04681 Nudix_Hydrolase_22 Mem 99.7 1.6E-17 3.6E-22 103.0 8.4 57 33-89 10-68 (130)
30 cd04680 Nudix_Hydrolase_21 Mem 99.7 2E-17 4.4E-22 101.0 8.6 63 29-92 4-68 (120)
31 cd04670 Nudix_Hydrolase_12 Mem 99.7 3.1E-17 6.8E-22 101.6 9.5 63 26-88 3-67 (127)
32 cd03671 Ap4A_hydrolase_plant_l 99.7 2.2E-17 4.7E-22 105.0 8.9 61 27-87 5-66 (147)
33 cd02885 IPP_Isomerase Isopente 99.7 1E-17 2.2E-22 108.5 7.0 83 3-85 7-96 (165)
34 cd03674 Nudix_Hydrolase_1 Memb 99.7 2.6E-17 5.7E-22 103.6 7.9 58 26-84 3-62 (138)
35 cd03429 NADH_pyrophosphatase N 99.7 2.2E-17 4.8E-22 103.3 7.4 59 30-88 5-65 (131)
36 PRK10546 pyrimidine (deoxy)nuc 99.7 7.1E-17 1.5E-21 100.7 9.5 64 27-90 6-72 (135)
37 cd04666 Nudix_Hydrolase_9 Memb 99.7 5.9E-17 1.3E-21 100.6 8.6 57 36-93 15-72 (122)
38 cd04676 Nudix_Hydrolase_17 Mem 99.7 9.8E-17 2.1E-21 98.5 9.3 61 27-88 4-65 (129)
39 cd04667 Nudix_Hydrolase_10 Mem 99.7 6.3E-17 1.4E-21 98.4 8.0 59 30-90 5-63 (112)
40 PRK05379 bifunctional nicotina 99.7 6.9E-17 1.5E-21 115.2 9.5 61 22-82 200-262 (340)
41 PRK00241 nudC NADH pyrophospha 99.7 5.6E-17 1.2E-21 111.9 8.4 74 16-89 123-197 (256)
42 PF00293 NUDIX: NUDIX domain; 99.7 9.3E-17 2E-21 99.0 8.6 66 26-91 3-73 (134)
43 cd03426 CoAse Coenzyme A pyrop 99.7 7.8E-17 1.7E-21 103.7 8.4 54 36-89 16-74 (157)
44 cd04697 Nudix_Hydrolase_38 Mem 99.7 8.9E-17 1.9E-21 99.8 8.4 62 31-92 7-73 (126)
45 cd03672 Dcp2p mRNA decapping e 99.7 6.3E-17 1.4E-21 103.1 7.6 53 28-81 4-58 (145)
46 cd04664 Nudix_Hydrolase_7 Memb 99.7 8.8E-17 1.9E-21 99.8 7.9 54 35-88 14-68 (129)
47 cd04699 Nudix_Hydrolase_39 Mem 99.7 1.3E-16 2.8E-21 98.3 8.0 59 27-85 3-66 (129)
48 PRK00714 RNA pyrophosphohydrol 99.7 1.8E-16 4E-21 102.0 9.0 62 27-88 10-72 (156)
49 cd04665 Nudix_Hydrolase_8 Memb 99.7 2.3E-16 5E-21 97.6 9.0 63 28-92 3-65 (118)
50 cd04693 Nudix_Hydrolase_34 Mem 99.7 1.5E-16 3.3E-21 98.5 7.0 57 31-88 7-70 (127)
51 cd04695 Nudix_Hydrolase_36 Mem 99.7 1.7E-16 3.6E-21 99.1 7.2 49 34-82 12-61 (131)
52 PRK10776 nucleoside triphospha 99.7 6.9E-16 1.5E-20 94.9 9.6 57 34-90 14-73 (129)
53 PRK15393 NUDIX hydrolase YfcD; 99.7 3.2E-16 7E-21 103.0 8.2 85 4-88 16-106 (180)
54 cd03424 ADPRase_NUDT5 ADP-ribo 99.7 4.5E-16 9.8E-21 97.4 8.2 63 28-90 5-71 (137)
55 PRK11762 nudE adenosine nucleo 99.7 1.2E-15 2.7E-20 100.5 9.7 59 32-90 55-116 (185)
56 TIGR00586 mutt mutator mutT pr 99.7 1.7E-15 3.8E-20 93.3 9.7 57 33-89 13-72 (128)
57 PRK03759 isopentenyl-diphospha 99.7 7.1E-16 1.5E-20 101.6 8.1 78 4-81 12-96 (184)
58 TIGR02705 nudix_YtkD nucleosid 99.6 1.8E-15 4E-20 97.6 9.7 62 29-92 28-89 (156)
59 cd04661 MRP_L46 Mitochondrial 99.6 4.8E-16 1E-20 97.4 5.9 48 34-81 11-59 (132)
60 cd04692 Nudix_Hydrolase_33 Mem 99.6 1.3E-15 2.9E-20 96.4 7.9 63 27-89 4-77 (144)
61 cd03428 Ap4A_hydrolase_human_l 99.6 5.5E-16 1.2E-20 96.0 5.6 47 37-85 18-64 (130)
62 TIGR02150 IPP_isom_1 isopenten 99.6 1.3E-15 2.7E-20 98.3 7.3 78 3-82 4-88 (158)
63 cd04694 Nudix_Hydrolase_35 Mem 99.6 3.6E-15 7.8E-20 95.0 9.0 61 28-88 4-73 (143)
64 cd04674 Nudix_Hydrolase_16 Mem 99.6 5.8E-15 1.3E-19 91.4 9.5 59 31-90 11-73 (118)
65 cd03425 MutT_pyrophosphohydrol 99.6 1.1E-14 2.4E-19 88.5 9.0 60 31-90 7-70 (124)
66 cd02883 Nudix_Hydrolase Nudix 99.6 1.1E-14 2.3E-19 87.8 8.3 64 28-91 3-68 (123)
67 PRK10707 putative NUDIX hydrol 99.6 1.6E-14 3.5E-19 95.8 9.4 56 35-90 43-103 (190)
68 TIGR00052 nudix-type nucleosid 99.6 1.2E-14 2.7E-19 96.0 7.6 56 35-90 56-119 (185)
69 cd04685 Nudix_Hydrolase_26 Mem 99.6 3E-14 6.5E-19 89.6 8.6 56 30-85 5-66 (133)
70 cd03676 Nudix_hydrolase_3 Memb 99.6 2.7E-14 5.8E-19 93.6 8.2 64 18-81 25-98 (180)
71 cd04662 Nudix_Hydrolase_5 Memb 99.5 9E-14 1.9E-18 86.9 8.9 45 36-80 15-65 (126)
72 COG0494 MutT NTP pyrophosphohy 99.5 6.4E-14 1.4E-18 86.1 8.1 55 36-90 24-81 (161)
73 PRK10729 nudF ADP-ribose pyrop 99.5 1.1E-13 2.3E-18 92.7 9.2 56 35-90 61-124 (202)
74 PRK08999 hypothetical protein; 99.5 2.1E-13 4.6E-18 95.7 9.4 56 34-89 15-73 (312)
75 cd03670 ADPRase_NUDT9 ADP-ribo 99.5 5.2E-13 1.1E-17 88.4 9.9 41 37-78 50-90 (186)
76 COG2816 NPY1 NTP pyrophosphohy 99.5 1.3E-13 2.8E-18 95.5 7.1 77 15-91 134-211 (279)
77 PLN02709 nudix hydrolase 99.5 2.2E-13 4.9E-18 92.2 7.4 54 37-90 52-110 (222)
78 KOG3084|consensus 99.5 1.3E-13 2.8E-18 96.6 6.1 63 25-87 188-252 (345)
79 KOG2839|consensus 99.5 2.6E-13 5.6E-18 85.8 6.9 65 25-89 9-77 (145)
80 cd04663 Nudix_Hydrolase_6 Memb 99.4 9.6E-13 2.1E-17 82.3 6.9 41 37-79 15-55 (126)
81 PRK15009 GDP-mannose pyrophosp 99.4 4.5E-12 9.8E-17 84.2 8.4 54 35-89 57-119 (191)
82 PLN02791 Nudix hydrolase homol 99.3 2.1E-11 4.5E-16 94.3 9.0 84 4-87 10-103 (770)
83 PLN03143 nudix hydrolase; Prov 99.3 2.2E-11 4.7E-16 85.4 8.0 44 37-80 144-191 (291)
84 PLN02552 isopentenyl-diphospha 99.3 3.9E-11 8.5E-16 82.5 9.0 70 21-90 52-149 (247)
85 KOG3041|consensus 99.1 5.2E-10 1.1E-14 74.2 8.5 58 23-80 73-135 (225)
86 KOG3069|consensus 98.9 2.2E-09 4.8E-14 72.8 5.3 54 36-89 58-116 (246)
87 cd03431 DNA_Glycosylase_C DNA 98.8 4.7E-08 1E-12 58.9 8.2 49 28-76 6-57 (118)
88 KOG0648|consensus 98.8 1.1E-08 2.3E-13 71.7 4.6 60 21-80 111-175 (295)
89 COG4119 Predicted NTP pyrophos 98.5 2.1E-07 4.5E-12 58.2 5.1 44 37-80 19-68 (161)
90 PLN02839 nudix hydrolase 98.4 8.1E-07 1.8E-11 64.1 6.6 56 36-91 218-281 (372)
91 KOG4195|consensus 98.3 8.5E-07 1.9E-11 60.1 3.7 38 37-75 140-177 (275)
92 COG1443 Idi Isopentenyldiphosp 98.2 1.8E-06 3.9E-11 56.5 3.8 69 25-93 33-110 (185)
93 PF14815 NUDIX_4: NUDIX domain 98.1 7.5E-06 1.6E-10 49.7 4.7 61 29-90 2-65 (114)
94 PF13869 NUDIX_2: Nucleotide h 97.4 0.0044 9.4E-08 41.3 9.4 54 37-92 59-118 (188)
95 KOG2937|consensus 97.3 4.7E-05 1E-09 54.3 -0.6 44 36-80 95-138 (348)
96 COG4112 Predicted phosphoester 96.4 0.025 5.5E-07 37.0 6.7 64 27-90 63-143 (203)
97 KOG1689|consensus 96.2 0.014 3.1E-07 38.5 5.0 53 36-90 84-142 (221)
98 KOG4313|consensus 95.1 0.034 7.3E-07 38.7 3.7 43 37-79 149-196 (306)
99 KOG4432|consensus 95.0 0.033 7.1E-07 39.8 3.6 40 51-90 82-121 (405)
100 PRK10880 adenine DNA glycosyla 94.9 0.08 1.7E-06 38.5 5.4 42 30-78 236-280 (350)
101 KOG4548|consensus 93.9 0.12 2.7E-06 35.9 4.3 42 37-78 140-183 (263)
102 TIGR01084 mutY A/G-specific ad 92.5 0.52 1.1E-05 33.1 5.8 22 34-55 237-261 (275)
103 KOG0142|consensus 90.1 0.14 3.1E-06 34.6 1.0 57 25-81 52-123 (225)
104 PRK13910 DNA glycosylase MutY; 89.2 0.74 1.6E-05 32.7 4.1 25 31-55 192-218 (289)
105 PF14443 DBC1: DBC1 85.0 1.2 2.5E-05 28.0 2.8 34 47-80 23-59 (126)
106 PF03487 IL13: Interleukin-13; 83.1 1.4 3E-05 22.1 2.1 22 54-75 15-36 (43)
107 PF07026 DUF1317: Protein of u 73.4 2.9 6.3E-05 22.7 1.7 26 48-73 22-47 (60)
108 KOG4432|consensus 70.2 4 8.6E-05 29.5 2.2 33 50-82 286-318 (405)
109 PF14044 NETI: NETI protein 59.6 9 0.0002 20.7 1.8 21 56-78 3-23 (57)
110 PF09505 Dimeth_Pyl: Dimethyla 58.6 6.6 0.00014 28.8 1.6 24 56-79 408-431 (466)
111 COG1194 MutY A/G-specific DNA 58.0 9.3 0.0002 27.9 2.3 33 27-59 238-273 (342)
112 KOG2937|consensus 52.1 5.1 0.00011 29.2 0.2 35 46-80 262-296 (348)
113 COG4111 Uncharacterized conser 49.5 80 0.0017 22.5 5.6 57 33-94 33-91 (322)
114 PF03479 DUF296: Domain of unk 45.1 51 0.0011 20.0 3.8 34 55-89 6-39 (120)
115 PRK07198 hypothetical protein; 45.0 38 0.00082 25.5 3.7 44 34-79 160-203 (418)
116 PF13014 KH_3: KH domain 44.3 23 0.00051 17.2 1.9 17 67-83 12-28 (43)
117 COG0828 RpsU Ribosomal protein 41.8 26 0.00057 19.5 1.9 18 52-69 1-18 (67)
118 COG1707 ACT domain-containing 36.3 22 0.00047 23.8 1.2 22 67-88 159-180 (218)
119 KOG1202|consensus 33.8 41 0.00089 29.5 2.6 31 49-85 269-299 (2376)
120 cd02393 PNPase_KH Polynucleoti 31.0 48 0.001 17.6 1.9 16 67-82 23-38 (61)
121 cd01813 UBP_N UBP ubiquitin pr 30.2 89 0.0019 17.2 3.0 30 56-86 15-44 (74)
122 PF01491 Frataxin_Cyay: Fratax 29.8 1.3E+02 0.0028 18.0 5.6 22 59-80 86-107 (109)
123 KOG0648|consensus 29.4 24 0.00053 25.3 0.6 32 49-81 56-87 (295)
124 PF03068 PAD: Protein-arginine 29.0 36 0.00078 25.4 1.5 30 53-82 323-352 (385)
125 COG1598 Predicted nuclease of 28.9 1.1E+02 0.0024 16.9 3.7 23 52-75 20-44 (73)
126 KOG1794|consensus 26.9 1.5E+02 0.0032 21.7 4.2 51 34-87 22-73 (336)
127 PF13680 DUF4152: Protein of u 25.8 60 0.0013 21.8 1.9 16 65-80 117-132 (227)
128 PRK00270 rpsU 30S ribosomal pr 25.4 78 0.0017 17.3 2.1 25 53-77 2-28 (64)
129 COG4800 Predicted transcriptio 24.7 51 0.0011 21.3 1.4 24 56-80 10-33 (170)
130 TIGR03722 arch_KAE1 universal 24.1 2.7E+02 0.0059 19.8 5.8 26 66-91 51-76 (322)
131 PF11212 DUF2999: Protein of u 23.4 75 0.0016 18.1 1.8 15 66-80 58-72 (82)
132 COG4009 Uncharacterized protei 22.7 97 0.0021 18.0 2.2 23 57-81 56-78 (88)
No 1
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.86 E-value=1.9e-21 Score=124.17 Aligned_cols=74 Identities=32% Similarity=0.421 Sum_probs=66.3
Q ss_pred CceeEEEEEEEEcCCEEEEEEEeCCC--CCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCCCCC
Q psy11365 22 PTMALFITTACVMSTLILLVTSSRRP--EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95 (95)
Q Consensus 22 ~~~~~~~~~~~~~~~~vll~~r~~~~--g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~p 95 (95)
....+.+.+++..++++||+||+..| |.|.+|||+++.|||+++||.||++||||+++...+++++++.+.|||
T Consensus 7 ~~p~~~v~~~i~~~~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~ 82 (145)
T COG1051 7 RTPLVAVGALIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDP 82 (145)
T ss_pred CCcceeeeEEEEeCCEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCC
Confidence 34556677777788899999998765 789999999999999999999999999999999999999999999885
No 2
>PLN02325 nudix hydrolase
Probab=99.82 E-value=1.4e-19 Score=115.14 Aligned_cols=72 Identities=24% Similarity=0.190 Sum_probs=61.4
Q ss_pred CCceeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365 21 CPTMALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92 (95)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 92 (95)
++...+.+.+++.+++++||+||... .|.|.+|||+++.|||+.+||+||++||||+.+...++++++++..
T Consensus 5 ~~~p~~~v~~vi~~~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~ 78 (144)
T PLN02325 5 EPIPRVAVVVFLLKGNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVF 78 (144)
T ss_pred CCCCeEEEEEEEEcCCEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEeccee
Confidence 44556677777788889999998753 3799999999999999999999999999999999899888876543
No 3
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.80 E-value=1.5e-19 Score=111.34 Aligned_cols=63 Identities=33% Similarity=0.570 Sum_probs=54.7
Q ss_pred EEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 28 ITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 28 ~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
+.+++.+++++||++|++. ++.|.||||+++.|||+.+||.||++||||+.+....+++.+..
T Consensus 3 ~~~ii~~~~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~ 67 (128)
T cd04684 3 AYAVIPRDGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASR 67 (128)
T ss_pred eEEEEEeCCEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEE
Confidence 4556667899999999764 58999999999999999999999999999999888887777654
No 4
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1e-18 Score=107.97 Aligned_cols=67 Identities=30% Similarity=0.365 Sum_probs=55.8
Q ss_pred EEEEEEEEc-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365 26 LFITTACVM-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92 (95)
Q Consensus 26 ~~~~~~~~~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 92 (95)
+.+.+++++ ++++||++|... +|.|.||||++++|||+.+||+||++||||+.+...++++.+.+..
T Consensus 3 ~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~ 72 (125)
T cd04679 3 VGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHII 72 (125)
T ss_pred eEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecc
Confidence 345555555 589999998753 4899999999999999999999999999999998888888776543
No 5
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.79 E-value=1e-18 Score=111.15 Aligned_cols=65 Identities=26% Similarity=0.340 Sum_probs=54.7
Q ss_pred eEEEEEEEEc-CCEEEEEEEeC--CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec--eeEEEEe
Q psy11365 25 ALFITTACVM-STLILLVTSSR--RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG--RSLGVFE 89 (95)
Q Consensus 25 ~~~~~~~~~~-~~~vll~~r~~--~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~--~~~~~~~ 89 (95)
.+.+.+++.+ ++++||+||.. .+|.|.||||+++.|||+.+||+||++||||+.+... ++++.++
T Consensus 12 ~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~ 81 (144)
T cd03430 12 LVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFE 81 (144)
T ss_pred eEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEE
Confidence 4566666666 58999999865 3589999999999999999999999999999998766 7777665
No 6
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.78 E-value=1.5e-18 Score=107.25 Aligned_cols=64 Identities=34% Similarity=0.460 Sum_probs=55.7
Q ss_pred EEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 26 LFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 26 ~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
+.+.+++.+++++||+++. ..+.|.+|||++++|||+.+||.||++||||+.+....+++.+.+
T Consensus 2 ~~~~~vi~~~~~vLlv~~~-~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~ 65 (125)
T cd04689 2 LRARAIVRAGNKVLLARVI-GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIEN 65 (125)
T ss_pred eEEEEEEEeCCEEEEEEec-CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEee
Confidence 4566677788999999985 457999999999999999999999999999999888888887654
No 7
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1e-18 Score=106.90 Aligned_cols=65 Identities=34% Similarity=0.509 Sum_probs=54.4
Q ss_pred EEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365 28 ITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92 (95)
Q Consensus 28 ~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 92 (95)
+.+++.+++++||++|.+. ++.|.||||++++|||+.+||.||++||||+.+....+++.++...
T Consensus 3 v~~ii~~~~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~ 69 (122)
T cd04673 3 VGAVVFRGGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIE 69 (122)
T ss_pred EEEEEEECCEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEee
Confidence 4455667789999998753 4789999999999999999999999999999988777777765543
No 8
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.78 E-value=2.9e-18 Score=106.89 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=58.0
Q ss_pred CceeEEEEEEEEcCCEEEEEEEeC--CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 22 PTMALFITTACVMSTLILLVTSSR--RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 22 ~~~~~~~~~~~~~~~~vll~~r~~--~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
+.....+.+++.+++++||++|.. ..|.|.+|||+++.|||+.+||.||++||||+++....+++++..+
T Consensus 10 ~~~~~~v~~ii~~~~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~ 81 (130)
T cd04511 10 QNPKIIVGCVPEWEGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP 81 (130)
T ss_pred CCCcEEEEEEEecCCEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC
Confidence 344556666677789999999865 3479999999999999999999999999999998877777776654
No 9
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.6e-18 Score=107.07 Aligned_cols=62 Identities=26% Similarity=0.421 Sum_probs=52.2
Q ss_pred EEEEEcC-CEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 29 TTACVMS-TLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 29 ~~~~~~~-~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
.++++++ +++||++|... .+.|.||||+++.|||+.+||+||++||||+++...++++.+.+
T Consensus 4 ~~ii~~~~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~ 67 (121)
T cd04669 4 SIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ 67 (121)
T ss_pred EEEEEeCCCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee
Confidence 3444454 89999998653 36899999999999999999999999999999987777777665
No 10
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=2e-18 Score=106.03 Aligned_cols=63 Identities=29% Similarity=0.296 Sum_probs=51.8
Q ss_pred EEEEEEcCCEEEEEEEeC----CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 28 ITTACVMSTLILLVTSSR----RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 28 ~~~~~~~~~~vll~~r~~----~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
+++++++++++||+||.. .+|.|.||||++++|||+.+||.||++||||+.+.....++.+..
T Consensus 3 v~~vi~~~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~ 69 (117)
T cd04691 3 VVGVLFSDDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYH 69 (117)
T ss_pred EEEEEEECCEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEec
Confidence 344555678999999864 358999999999999999999999999999999766666665544
No 11
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.7e-18 Score=107.07 Aligned_cols=61 Identities=30% Similarity=0.286 Sum_probs=51.4
Q ss_pred EEEEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEE
Q psy11365 27 FITTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV 87 (95)
Q Consensus 27 ~~~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~ 87 (95)
++.+++.+ ++++||+||...+|.|.+|||++++|||+.+||.||++||||+.+...+++..
T Consensus 4 ~v~~~i~~~~~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~ 65 (125)
T cd04696 4 TVGALIYAPDGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMV 65 (125)
T ss_pred EEEEEEECCCCCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEE
Confidence 44555555 78999998866678999999999999999999999999999998876666554
No 12
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.5e-18 Score=106.36 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=52.1
Q ss_pred EEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee--eceeEEEEec
Q psy11365 28 ITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK--LGRSLGVFEV 90 (95)
Q Consensus 28 ~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~--~~~~~~~~~~ 90 (95)
+.+++.+++++||+||.+. +|.|.||||++++|||+.+||.||++||||+.+. ...+++.+..
T Consensus 3 v~~vi~~~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~ 70 (120)
T cd04683 3 VYVLLRRDDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHR 70 (120)
T ss_pred EEEEEEECCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEe
Confidence 4556677899999998753 5899999999999999999999999999999876 4556665543
No 13
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.77 E-value=3.3e-18 Score=106.94 Aligned_cols=64 Identities=28% Similarity=0.416 Sum_probs=55.3
Q ss_pred EEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 28 ITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 28 ~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
..+++.+++++||++|... ++.|.+|||+++.|||+.+||+||++||||+.+...++++.+...
T Consensus 4 ~~~~i~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~ 69 (137)
T cd03427 4 TLCFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFP 69 (137)
T ss_pred EEEEEEECCEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEE
Confidence 3445566799999999764 689999999999999999999999999999999888888877654
No 14
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.77 E-value=4.1e-18 Score=110.28 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=51.5
Q ss_pred eEEEEEEEEc-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee--eceeEEEE
Q psy11365 25 ALFITTACVM-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK--LGRSLGVF 88 (95)
Q Consensus 25 ~~~~~~~~~~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~--~~~~~~~~ 88 (95)
.+.+.+++.+ .++|||+||... +|.|+||||+++.|||+++||+||++||||+.+. ..++++++
T Consensus 17 ~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~ 85 (159)
T PRK15434 17 LISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVW 85 (159)
T ss_pred eEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEE
Confidence 4456666665 589999999653 4899999999999999999999999999999864 33555543
No 15
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.77 E-value=3e-18 Score=106.90 Aligned_cols=64 Identities=25% Similarity=0.307 Sum_probs=54.2
Q ss_pred EEEEEEEcCCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 27 FITTACVMSTLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 27 ~~~~~~~~~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
.+.+++..++++||++|.+. ++.|.||||++++|||+.+||.||++||||+.+....+++.+..
T Consensus 2 ~v~~ii~~~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~ 66 (134)
T cd03675 2 TVAAVVERDGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQW 66 (134)
T ss_pred eEEEEEEECCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEe
Confidence 45566677899999998764 36999999999999999999999999999999887777776554
No 16
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.77 E-value=5.5e-18 Score=107.40 Aligned_cols=70 Identities=27% Similarity=0.363 Sum_probs=56.5
Q ss_pred cCCceeEEEEEEEEc-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 20 RCPTMALFITTACVM-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 20 ~~~~~~~~~~~~~~~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
..+.....+.+++++ ++++||+++... ++.|+||||++++|||+.+||+||++||||+.+...++++.+.
T Consensus 8 ~~~~~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~ 80 (142)
T cd04700 8 HVEVEARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYL 80 (142)
T ss_pred CcceeeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEE
Confidence 344455556656665 678999887653 4899999999999999999999999999999998888777664
No 17
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=4.5e-18 Score=105.54 Aligned_cols=64 Identities=33% Similarity=0.420 Sum_probs=53.8
Q ss_pred EEEEEEEcCCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 27 FITTACVMSTLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 27 ~~~~~~~~~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
.+.+++.+++++||++|... ++.|.+|||+++.|||+++||.||++||||+.+...+++.++++
T Consensus 3 ~a~~iv~~~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~ 67 (128)
T cd04687 3 SAKAVIIKNDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREY 67 (128)
T ss_pred EEEEEEEECCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEE
Confidence 45566678899999998653 46899999999999999999999999999999887776666554
No 18
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=5.3e-18 Score=104.68 Aligned_cols=64 Identities=28% Similarity=0.380 Sum_probs=54.4
Q ss_pred EEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 26 LFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 26 ~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
+.+.+++.+++++||+++++ .+.|.||||++++|||+.+||.||++||||+.+...++++.+..
T Consensus 3 ~~v~~~i~~~~~vLL~~~~~-~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~ 66 (123)
T cd04672 3 VDVRAAIFKDGKILLVREKS-DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDR 66 (123)
T ss_pred ceEEEEEEECCEEEEEEEcC-CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEecc
Confidence 45566667789999999865 68999999999999999999999999999999877777766543
No 19
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.76 E-value=3.4e-18 Score=108.57 Aligned_cols=53 Identities=30% Similarity=0.463 Sum_probs=45.9
Q ss_pred EEEEEEE-cCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCce
Q psy11365 27 FITTACV-MSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLG 79 (95)
Q Consensus 27 ~~~~~~~-~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~ 79 (95)
.+.+++. .++++||+||...++.|++|||++++|||+.+||+||++||||+.+
T Consensus 9 ~v~~vi~~~~~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~ 62 (148)
T PRK09438 9 SVLVVIYTPDLGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDV 62 (148)
T ss_pred EEEEEEEeCCCeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCc
Confidence 3444444 4779999988766789999999999999999999999999999987
No 20
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=7.1e-18 Score=104.67 Aligned_cols=64 Identities=30% Similarity=0.358 Sum_probs=52.6
Q ss_pred eEEEEEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 25 ALFITTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 25 ~~~~~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
...+.+++.+ ++++||++|+.. +.|.||||++++|||+.+||.||++||||+.+.....++++.
T Consensus 7 ~~~~~~~v~~~~~~vLL~~r~~~-~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~ 71 (132)
T cd04677 7 LVGAGVILLNEQGEVLLQKRSDT-GDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYS 71 (132)
T ss_pred ccceEEEEEeCCCCEEEEEecCC-CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEec
Confidence 3344455455 589999988654 899999999999999999999999999999998877776553
No 21
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.75 E-value=4.3e-18 Score=105.19 Aligned_cols=55 Identities=36% Similarity=0.719 Sum_probs=48.9
Q ss_pred CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
+++||++|++. +.|.||||++++|||+.+||.||++||||+.+.....++.+.+.
T Consensus 16 ~~vLl~~~~~~-~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~ 70 (131)
T cd03673 16 IEVLLIHRPRG-DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYW 70 (131)
T ss_pred eEEEEEEcCCC-CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEe
Confidence 78999998654 89999999999999999999999999999999888877776553
No 22
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=8.2e-18 Score=104.04 Aligned_cols=61 Identities=28% Similarity=0.440 Sum_probs=52.5
Q ss_pred EEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 28 ITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 28 ~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
+.+++.+++++||+|+.. .+.|.+|||+++.|||+.+||.||++||||+.+...++++.+.
T Consensus 4 v~~vi~~~~~vLl~~~~~-~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~ 64 (126)
T cd04688 4 AAAIIIHNGKLLVQKNPD-ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVE 64 (126)
T ss_pred EEEEEEECCEEEEEEeCC-CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEE
Confidence 445555677999998754 6799999999999999999999999999999988888877765
No 23
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.75 E-value=7e-18 Score=106.39 Aligned_cols=55 Identities=29% Similarity=0.427 Sum_probs=47.1
Q ss_pred EEEEEEEEcCCEEEEEEEeCC----CCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365 26 LFITTACVMSTLILLVTSSRR----PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 26 ~~~~~~~~~~~~vll~~r~~~----~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~ 80 (95)
.++++++.+++++||+||... +|.|.+|||++++|||+.+||.||++||||+.+.
T Consensus 5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 63 (141)
T PRK15472 5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLL 63 (141)
T ss_pred eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCcee
Confidence 355556667889999998652 4899999999999999999999999999999764
No 24
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.3e-17 Score=101.85 Aligned_cols=63 Identities=29% Similarity=0.415 Sum_probs=52.8
Q ss_pred EEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee--ceeEEEEecC
Q psy11365 28 ITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL--GRSLGVFEVR 91 (95)
Q Consensus 28 ~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~--~~~~~~~~~~ 91 (95)
+++++..++++||+||+ ..+.|.||||++++|||+++||.||++||||+.+.. .+.++.+...
T Consensus 4 ~~~v~~~~~~vLl~~r~-~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~ 68 (118)
T cd04690 4 AALILVRDGRVLLVRKR-GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAP 68 (118)
T ss_pred EEEEEecCCeEEEEEEC-CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecc
Confidence 34444567799999875 457999999999999999999999999999998877 7788777654
No 25
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.2e-17 Score=103.64 Aligned_cols=65 Identities=26% Similarity=0.258 Sum_probs=54.5
Q ss_pred EEEEEEEEc-CCEEEEEEEeC--CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 26 LFITTACVM-STLILLVTSSR--RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 26 ~~~~~~~~~-~~~vll~~r~~--~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
+.+.+++.+ ++++||++|.. .++.|.+|||+++.|||+.+||.||++||||+++...++++.+..
T Consensus 3 ~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~ 70 (129)
T cd04678 3 VGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTND 70 (129)
T ss_pred eEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeE
Confidence 355556666 48999999874 468999999999999999999999999999999887777776553
No 26
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.5e-17 Score=104.04 Aligned_cols=61 Identities=28% Similarity=0.509 Sum_probs=51.3
Q ss_pred EEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCce-eeceeEEEEe
Q psy11365 28 ITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLG-KLGRSLGVFE 89 (95)
Q Consensus 28 ~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~-~~~~~~~~~~ 89 (95)
+.+++.++++|||+++.+ .+.|.||||++++|||+.+||.||++||||+.+ .....++.+.
T Consensus 3 ~~~ii~~~~~vLLv~~~~-~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~ 64 (131)
T cd04686 3 VRAIILQGDKILLLYTKR-YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYT 64 (131)
T ss_pred EEEEEEECCEEEEEEEcC-CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEE
Confidence 456667889999999865 368999999999999999999999999999986 4556666654
No 27
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.9e-17 Score=102.76 Aligned_cols=60 Identities=28% Similarity=0.442 Sum_probs=50.7
Q ss_pred EEEEEc-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365 29 TTACVM-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88 (95)
Q Consensus 29 ~~~~~~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~ 88 (95)
.+++++ ++++||++|.+. ++.|.||||+++.|||+.+||.||++||||+.+...++++..
T Consensus 4 ~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~ 66 (123)
T cd04671 4 AAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVE 66 (123)
T ss_pred EEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEE
Confidence 344444 689999998753 479999999999999999999999999999999877777654
No 28
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.2e-17 Score=102.99 Aligned_cols=54 Identities=31% Similarity=0.464 Sum_probs=46.7
Q ss_pred EEEEEEcCCEEEEEEEeCC-----CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365 28 ITTACVMSTLILLVTSSRR-----PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL 81 (95)
Q Consensus 28 ~~~~~~~~~~vll~~r~~~-----~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~ 81 (95)
+++++.+++++||++|... +|.|.||||+++.|||+++||.||++||||+.+..
T Consensus 4 ~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~ 62 (122)
T cd04682 4 ALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPE 62 (122)
T ss_pred EEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccc
Confidence 4445566789999999653 58999999999999999999999999999998753
No 29
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.6e-17 Score=102.99 Aligned_cols=57 Identities=26% Similarity=0.307 Sum_probs=49.2
Q ss_pred EcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 33 VMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 33 ~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
..++++||++|... +|.|.+|||+++.|||+.+||.||++||||+++...++++.+.
T Consensus 10 ~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~ 68 (130)
T cd04681 10 NEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLP 68 (130)
T ss_pred cCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeec
Confidence 34689999998654 4799999999999999999999999999999988777776553
No 30
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2e-17 Score=101.02 Aligned_cols=63 Identities=32% Similarity=0.464 Sum_probs=52.9
Q ss_pred EEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee-eceeEEEEecCC
Q psy11365 29 TTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK-LGRSLGVFEVRP 92 (95)
Q Consensus 29 ~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~-~~~~~~~~~~~~ 92 (95)
.+++.+ ++++||++|+.. +.|.||||+++.|||+++||+||++||||+.+. ...+++.+.+..
T Consensus 4 ~~~i~~~~~~vLL~~r~~~-~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~ 68 (120)
T cd04680 4 RAVVTDADGRVLLVRHTYG-PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSA 68 (120)
T ss_pred EEEEECCCCeEEEEEECCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCC
Confidence 344444 689999988544 499999999999999999999999999999998 888888877654
No 31
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=3.1e-17 Score=101.55 Aligned_cols=63 Identities=29% Similarity=0.479 Sum_probs=51.2
Q ss_pred EEEEEEEEc-CCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365 26 LFITTACVM-STLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88 (95)
Q Consensus 26 ~~~~~~~~~-~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~ 88 (95)
+.+.+++++ ++++||++|+.. ++.|.||||++++|||+.+||.||++||||+.+.....++..
T Consensus 3 ~~~~~~v~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~ 67 (127)
T cd04670 3 VGVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFR 67 (127)
T ss_pred eEEEEEEEcCCCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEE
Confidence 345555555 579999987543 689999999999999999999999999999998766666543
No 32
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.74 E-value=2.2e-17 Score=105.01 Aligned_cols=61 Identities=23% Similarity=0.400 Sum_probs=51.3
Q ss_pred EEEEEEE-cCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEE
Q psy11365 27 FITTACV-MSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV 87 (95)
Q Consensus 27 ~~~~~~~-~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~ 87 (95)
.+.++++ .++++||++|...++.|.+|||++++||++.+||.||++||||+.+...++++.
T Consensus 5 ~v~~ii~~~~~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~ 66 (147)
T cd03671 5 NVGVVLFNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAE 66 (147)
T ss_pred eEEEEEEeCCCEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEE
Confidence 3444444 468999999987768999999999999999999999999999999876666654
No 33
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.73 E-value=1e-17 Score=108.55 Aligned_cols=83 Identities=19% Similarity=0.142 Sum_probs=64.1
Q ss_pred cCCCCcCCccccccccccCCce-eEEEEEEEEc-CCEEEEEEEeC----CCCCEEec-eeecCCCCCHHHHHHHHHHHHh
Q psy11365 3 YDGPVHNHGLCHVDSVRRCPTM-ALFITTACVM-STLILLVTSSR----RPEHWIVP-GGGVEPEEEPAATALREVAEEA 75 (95)
Q Consensus 3 y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~vll~~r~~----~~g~w~~P-gG~ie~gE~~~~aa~REl~EE~ 75 (95)
||......|.......+..... +.++.+++++ ++++||+||.. .||.|.+| ||++++|||+++||+||++|||
T Consensus 7 ~d~~~~~~g~~~r~~~~~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEt 86 (165)
T cd02885 7 VDEDDNPIGTAEKLEAHLKGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREEL 86 (165)
T ss_pred ECCCCCCccccCHHHHhhcCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHh
Confidence 4556666676666666555544 6666666665 57999999865 36899986 8999999999999999999999
Q ss_pred CCceeeceeE
Q psy11365 76 GVLGKLGRSL 85 (95)
Q Consensus 76 Gl~~~~~~~~ 85 (95)
|+.+...+++
T Consensus 87 Gl~~~~~~~~ 96 (165)
T cd02885 87 GITGDLLELV 96 (165)
T ss_pred CCCccchhhc
Confidence 9998766554
No 34
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.72 E-value=2.6e-17 Score=103.65 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=47.3
Q ss_pred EEEEEEEEcC--CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeecee
Q psy11365 26 LFITTACVMS--TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRS 84 (95)
Q Consensus 26 ~~~~~~~~~~--~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~ 84 (95)
..+.++++++ +++||++|+. .|.|.+|||++++|||+.+||.||++||||+.+.....
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~~-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 62 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHRK-LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP 62 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEcC-CCcEECCceecCCCCCHHHHHHHHHHHHHCCCccccee
Confidence 3445555554 7999998854 58999999999999999999999999999998654443
No 35
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.72 E-value=2.2e-17 Score=103.33 Aligned_cols=59 Identities=32% Similarity=0.341 Sum_probs=50.7
Q ss_pred EEEEcC-CEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365 30 TACVMS-TLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88 (95)
Q Consensus 30 ~~~~~~-~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~ 88 (95)
+.+.++ +++||++|+.. +|.|.+|||+++.|||+.+||.||++||||+.+....+++..
T Consensus 5 i~l~~~~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~ 65 (131)
T cd03429 5 VLVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQ 65 (131)
T ss_pred EEEEeCCCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeec
Confidence 334454 89999998765 589999999999999999999999999999998887777764
No 36
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.72 E-value=7.1e-17 Score=100.69 Aligned_cols=64 Identities=25% Similarity=0.421 Sum_probs=52.3
Q ss_pred EEEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 27 FITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 27 ~~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
++.+++.+++++||+||... +|.|.||||+++.|||+.+|+.||++||||+.+...++++.+.+
T Consensus 6 ~~~~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~ 72 (135)
T PRK10546 6 VVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQR 72 (135)
T ss_pred EEEEEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEE
Confidence 44445567789999998653 48999999999999999999999999999999876666655543
No 37
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.72 E-value=5.9e-17 Score=100.56 Aligned_cols=57 Identities=58% Similarity=0.893 Sum_probs=50.2
Q ss_pred CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec-eeEEEEecCCC
Q psy11365 36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG-RSLGVFEVRPK 93 (95)
Q Consensus 36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~-~~~~~~~~~~~ 93 (95)
.++||+++.+. +.|.||||+++.|||+.+||+||++||||+..... ++++++.+..+
T Consensus 15 ~~vLLv~~~~~-~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~ 72 (122)
T cd04666 15 VEVLLVTSRRT-GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKR 72 (122)
T ss_pred eEEEEEEecCC-CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeec
Confidence 58999988654 89999999999999999999999999999998777 88888876543
No 38
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=9.8e-17 Score=98.50 Aligned_cols=61 Identities=38% Similarity=0.614 Sum_probs=50.0
Q ss_pred EEEEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365 27 FITTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88 (95)
Q Consensus 27 ~~~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~ 88 (95)
.+.+++.+ ++++||+||... |.|.||||+++.|||+.+||.||++||||+.+...++++.+
T Consensus 4 ~v~~ii~~~~~~vLl~~r~~~-~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~ 65 (129)
T cd04676 4 GVTAVVRDDEGRVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIY 65 (129)
T ss_pred eEEEEEECCCCeEEEEEecCC-CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEe
Confidence 34445545 489999998655 89999999999999999999999999999988766665443
No 39
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=6.3e-17 Score=98.42 Aligned_cols=59 Identities=36% Similarity=0.522 Sum_probs=50.1
Q ss_pred EEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 30 TACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 30 ~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
+++..++++||++|.. |.|.||||++++|||+.+||.||++||||+.+....+++.+..
T Consensus 5 ~i~~~~~~vLlv~r~~--~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~ 63 (112)
T cd04667 5 VICRRGGRVLLVRKSG--SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG 63 (112)
T ss_pred EEEecCCEEEEEEcCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC
Confidence 3445678999999853 8999999999999999999999999999999877777766543
No 40
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.71 E-value=6.9e-17 Score=115.16 Aligned_cols=61 Identities=30% Similarity=0.427 Sum_probs=51.7
Q ss_pred CceeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec
Q psy11365 22 PTMALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG 82 (95)
Q Consensus 22 ~~~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~ 82 (95)
+...+.+.++++.++++||++|... +|.|.+|||++++|||+++||.||++||||+++...
T Consensus 200 ~~~~vtv~avv~~~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~ 262 (340)
T PRK05379 200 PPTFVTVDAVVVQSGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEP 262 (340)
T ss_pred CCcceEEEEEEEECCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCccccc
Confidence 3344677777788899999999764 478999999999999999999999999999987544
No 41
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.71 E-value=5.6e-17 Score=111.85 Aligned_cols=74 Identities=31% Similarity=0.256 Sum_probs=59.2
Q ss_pred cccccCCceeEEEEEEEEcCCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 16 DSVRRCPTMALFITTACVMSTLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
.....++.....+.+++.+++++||+++++. +|.|.+|+|++++|||+++||.||++||||+++...++++...
T Consensus 123 c~~~~yp~~~paViv~V~~~~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~ 197 (256)
T PRK00241 123 CRERYYPRIAPCIIVAVRRGDEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQP 197 (256)
T ss_pred CCCEECCCCCCEEEEEEEeCCEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEe
Confidence 3334444444445556677889999998764 4899999999999999999999999999999998888887654
No 42
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.71 E-value=9.3e-17 Score=99.05 Aligned_cols=66 Identities=35% Similarity=0.559 Sum_probs=54.0
Q ss_pred EEEEEEEEc-CCEEEEEEEeCCC----CCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 26 LFITTACVM-STLILLVTSSRRP----EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 26 ~~~~~~~~~-~~~vll~~r~~~~----g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
..+.+++.+ ++++||+||.+.+ +.|.+|||++++|||+.+||+||+.||||+.+.....++.+.+.
T Consensus 3 ~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~ 73 (134)
T PF00293_consen 3 RAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYP 73 (134)
T ss_dssp EEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEE
T ss_pred CEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeec
Confidence 455556666 4599999998764 89999999999999999999999999999998766666655443
No 43
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.71 E-value=7.8e-17 Score=103.69 Aligned_cols=54 Identities=39% Similarity=0.590 Sum_probs=48.0
Q ss_pred CEEEEEEEeC----CCCCEEeceeecCCC-CCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 36 TLILLVTSSR----RPEHWIVPGGGVEPE-EEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 36 ~~vll~~r~~----~~g~w~~PgG~ie~g-E~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
+++||+||.. .+|.|.||||++++| ||+.+||.||++||||+.+.....++.+.
T Consensus 16 ~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~ 74 (157)
T cd03426 16 LRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLP 74 (157)
T ss_pred eEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECC
Confidence 5899999976 368999999999999 99999999999999999988777777654
No 44
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=8.9e-17 Score=99.78 Aligned_cols=62 Identities=26% Similarity=0.305 Sum_probs=51.3
Q ss_pred EEEcCCEEEEEEEeC----CCCCEEe-ceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365 31 ACVMSTLILLVTSSR----RPEHWIV-PGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92 (95)
Q Consensus 31 ~~~~~~~vll~~r~~----~~g~w~~-PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 92 (95)
++..++++||++|.. .+|.|.+ |||++++||++.+||+||++||||+.+.....++.+.+..
T Consensus 7 i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~ 73 (126)
T cd04697 7 VFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDT 73 (126)
T ss_pred EEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecC
Confidence 344578999998864 3688998 6999999999999999999999999988777777766543
No 45
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.70 E-value=6.3e-17 Score=103.15 Aligned_cols=53 Identities=26% Similarity=0.400 Sum_probs=44.1
Q ss_pred EEEEEEc-C-CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365 28 ITTACVM-S-TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL 81 (95)
Q Consensus 28 ~~~~~~~-~-~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~ 81 (95)
+++++.+ + +++||+|+... +.|+||||+++.|||+.+||.||++||||+.+..
T Consensus 4 ~gaii~~~~~~~vLLvr~~~~-~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~ 58 (145)
T cd03672 4 YGAIILNEDLDKVLLVKGWKS-KSWSFPKGKINKDEDDHDCAIREVYEETGFDISK 58 (145)
T ss_pred eEEEEEeCCCCEEEEEEecCC-CCEECCCccCCCCcCHHHHHHHHHHHhhCcccee
Confidence 3444444 3 69999998644 5999999999999999999999999999998764
No 46
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.70 E-value=8.8e-17 Score=99.76 Aligned_cols=54 Identities=35% Similarity=0.425 Sum_probs=47.2
Q ss_pred CCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365 35 STLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88 (95)
Q Consensus 35 ~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~ 88 (95)
++++||+||.+. +|.|.+|||+++.|||+.+||.||++||||+.+.....+..+
T Consensus 14 ~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~ 68 (129)
T cd04664 14 EGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRG 68 (129)
T ss_pred CCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeec
Confidence 679999999774 789999999999999999999999999999987655555544
No 47
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=1.3e-16 Score=98.32 Aligned_cols=59 Identities=31% Similarity=0.399 Sum_probs=49.3
Q ss_pred EEEEEEEcC-CEEEEEEEeCC----CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeE
Q psy11365 27 FITTACVMS-TLILLVTSSRR----PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSL 85 (95)
Q Consensus 27 ~~~~~~~~~-~~vll~~r~~~----~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~ 85 (95)
++.+++.++ +++||+||... +|.|+||||++++|||+.+||.||++||||+.+.....+
T Consensus 3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~ 66 (129)
T cd04699 3 AVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRY 66 (129)
T ss_pred eEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeee
Confidence 444555555 89999999753 579999999999999999999999999999988766653
No 48
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.69 E-value=1.8e-16 Score=102.00 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=51.8
Q ss_pred EEEEEEE-cCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365 27 FITTACV-MSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88 (95)
Q Consensus 27 ~~~~~~~-~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~ 88 (95)
.+.++++ .++++||+||...++.|.+|+|++++|||+.+||.||++||||+.+...++++.+
T Consensus 10 ~v~~~i~~~~g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~ 72 (156)
T PRK00714 10 NVGIILLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAET 72 (156)
T ss_pred eEEEEEEecCCEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEc
Confidence 4444444 4789999999766689999999999999999999999999999988766666654
No 49
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.69 E-value=2.3e-16 Score=97.65 Aligned_cols=63 Identities=33% Similarity=0.464 Sum_probs=54.0
Q ss_pred EEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365 28 ITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92 (95)
Q Consensus 28 ~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 92 (95)
+.+++..++++||+++. .+.|.||||+++.||++++||.||++||||+.+.....++.+....
T Consensus 3 v~vi~~~~~~vLl~~~~--~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~ 65 (118)
T cd04665 3 VLVICFYDDGLLLVRHK--DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDL 65 (118)
T ss_pred EEEEEEECCEEEEEEeC--CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecC
Confidence 34455678899999885 4689999999999999999999999999999998888888876544
No 50
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=1.5e-16 Score=98.52 Aligned_cols=57 Identities=32% Similarity=0.368 Sum_probs=45.4
Q ss_pred EEEcCCEEEEEEEeC----CCCCEEec-eeecCCCCCHHHHHHHHHHHHhCCceee--ceeEEEE
Q psy11365 31 ACVMSTLILLVTSSR----RPEHWIVP-GGGVEPEEEPAATALREVAEEAGVLGKL--GRSLGVF 88 (95)
Q Consensus 31 ~~~~~~~vll~~r~~----~~g~w~~P-gG~ie~gE~~~~aa~REl~EE~Gl~~~~--~~~~~~~ 88 (95)
++..++++||+||.. .+|.|.+| ||++++|||+ +||.||++||||+.+.. ...++.+
T Consensus 7 ~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~ 70 (127)
T cd04693 7 IFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRY 70 (127)
T ss_pred EEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEE
Confidence 333468999998875 35899998 8999999999 99999999999998763 3334444
No 51
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=1.7e-16 Score=99.07 Aligned_cols=49 Identities=33% Similarity=0.398 Sum_probs=43.3
Q ss_pred cCCEEEEEEEeC-CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec
Q psy11365 34 MSTLILLVTSSR-RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG 82 (95)
Q Consensus 34 ~~~~vll~~r~~-~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~ 82 (95)
.++++||.+|.. .+|.|.+|||++++|||+.+||.||++||||+++...
T Consensus 12 ~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~ 61 (131)
T cd04695 12 KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPEL 61 (131)
T ss_pred CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCcccc
Confidence 467999999865 3689999999999999999999999999999987643
No 52
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.68 E-value=6.9e-16 Score=94.94 Aligned_cols=57 Identities=25% Similarity=0.466 Sum_probs=47.6
Q ss_pred cCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 34 MSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 34 ~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
.++++||+||... +|.|+||||++++||++.+||.||++||||+.+...+.++.+.+
T Consensus 14 ~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~ 73 (129)
T PRK10776 14 PNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEY 73 (129)
T ss_pred CCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEe
Confidence 3579999998664 58999999999999999999999999999998766555555443
No 53
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.67 E-value=3.2e-16 Score=103.00 Aligned_cols=85 Identities=20% Similarity=0.142 Sum_probs=57.8
Q ss_pred CCCCcCCccccccccccCCceeEEEEEEEEc-CCEEEEEEEeCC----CCCE-EeceeecCCCCCHHHHHHHHHHHHhCC
Q psy11365 4 DGPVHNHGLCHVDSVRRCPTMALFITTACVM-STLILLVTSSRR----PEHW-IVPGGGVEPEEEPAATALREVAEEAGV 77 (95)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vll~~r~~~----~g~w-~~PgG~ie~gE~~~~aa~REl~EE~Gl 77 (95)
|......+.............+..+.+++++ ++++||++|... +|.| .+|||++++|||+.+||.|||+||||+
T Consensus 16 d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl 95 (180)
T PRK15393 16 NENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGI 95 (180)
T ss_pred CCCCCEeeEEEHHHHhhCCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444333333333445555556665 579999988642 4566 589999999999999999999999999
Q ss_pred ceeeceeEEEE
Q psy11365 78 LGKLGRSLGVF 88 (95)
Q Consensus 78 ~~~~~~~~~~~ 88 (95)
.......++.+
T Consensus 96 ~~~~~~~~~~~ 106 (180)
T PRK15393 96 AGVPFAEHGQF 106 (180)
T ss_pred CCccceeceeE
Confidence 86655555544
No 54
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.67 E-value=4.5e-16 Score=97.35 Aligned_cols=63 Identities=27% Similarity=0.315 Sum_probs=50.7
Q ss_pred EEEEEEc-CCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 28 ITTACVM-STLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 28 ~~~~~~~-~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
+.+++++ ++++||+++.+. ++.|.||||+++.|||+.+||.||++||||+.+.....++.+.+
T Consensus 5 v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~ 71 (137)
T cd03424 5 VAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYP 71 (137)
T ss_pred EEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEec
Confidence 3444444 589999887543 46899999999999999999999999999999876676666554
No 55
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.66 E-value=1.2e-15 Score=100.50 Aligned_cols=59 Identities=24% Similarity=0.279 Sum_probs=51.0
Q ss_pred EEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 32 CVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 32 ~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
+.+++++||+++.+. ...|+||+|.+++||++++||+||++||||+.+...+.++.+..
T Consensus 55 ~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~ 116 (185)
T PRK11762 55 ILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSL 116 (185)
T ss_pred EeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEec
Confidence 345778999998764 35799999999999999999999999999999998888887654
No 56
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=1.7e-15 Score=93.34 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=47.2
Q ss_pred EcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 33 VMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 33 ~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
..++++||.+|... +|.|+||||+++.|||+.+|+.||+.||||+.+...+.++.+.
T Consensus 13 ~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~ 72 (128)
T TIGR00586 13 NENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEY 72 (128)
T ss_pred CCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEE
Confidence 34569999999654 4799999999999999999999999999999876655555443
No 57
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.65 E-value=7.1e-16 Score=101.56 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=56.6
Q ss_pred CCCCcCCcccccccccc-CCceeEEEEEEEEc-CCEEEEEEEeC----CCCCEEec-eeecCCCCCHHHHHHHHHHHHhC
Q psy11365 4 DGPVHNHGLCHVDSVRR-CPTMALFITTACVM-STLILLVTSSR----RPEHWIVP-GGGVEPEEEPAATALREVAEEAG 76 (95)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~vll~~r~~----~~g~w~~P-gG~ie~gE~~~~aa~REl~EE~G 76 (95)
+......+......... ....+..+.+++++ +++|||+||.. .||.|.+| ||++++|||+++||.||++||||
T Consensus 12 d~~~~~~g~~~r~~~~~~~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtG 91 (184)
T PRK03759 12 DEQGVPTGTAEKAAAHTADTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELG 91 (184)
T ss_pred CCCCCCcccccHHHHHhcCCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhC
Confidence 34444555555544442 23445555565555 67999999853 36888876 89999999999999999999999
Q ss_pred Cceee
Q psy11365 77 VLGKL 81 (95)
Q Consensus 77 l~~~~ 81 (95)
+.+..
T Consensus 92 l~~~~ 96 (184)
T PRK03759 92 VEITD 96 (184)
T ss_pred CCccc
Confidence 98763
No 58
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.65 E-value=1.8e-15 Score=97.60 Aligned_cols=62 Identities=34% Similarity=0.425 Sum_probs=52.2
Q ss_pred EEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365 29 TTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92 (95)
Q Consensus 29 ~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 92 (95)
.++...++++||+++.. ..|+||||++++|||+.+||+||++||||+.+....+++.+....
T Consensus 28 ~ii~~~~~~~LL~~~~~--~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~ 89 (156)
T TIGR02705 28 LVIPRYKDQWLLTEHKR--RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEG 89 (156)
T ss_pred EEEEEECCEEEEEEEcC--CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecC
Confidence 33444566999998754 469999999999999999999999999999999999999877643
No 59
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.64 E-value=4.8e-16 Score=97.44 Aligned_cols=48 Identities=38% Similarity=0.443 Sum_probs=42.1
Q ss_pred cCCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365 34 MSTLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL 81 (95)
Q Consensus 34 ~~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~ 81 (95)
+++++||+|+... .|.|.||+|++++|||+.+||.||++||||+.+..
T Consensus 11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~ 59 (132)
T cd04661 11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA 59 (132)
T ss_pred cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE
Confidence 4678999998653 47999999999999999999999999999997653
No 60
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=1.3e-15 Score=96.42 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=48.7
Q ss_pred EEEEEEEc-C---CEEEEEEEeC----CCCCEEe-ceeecCCCCCHHHHHHHHHHHHhCCcee--eceeEEEEe
Q psy11365 27 FITTACVM-S---TLILLVTSSR----RPEHWIV-PGGGVEPEEEPAATALREVAEEAGVLGK--LGRSLGVFE 89 (95)
Q Consensus 27 ~~~~~~~~-~---~~vll~~r~~----~~g~w~~-PgG~ie~gE~~~~aa~REl~EE~Gl~~~--~~~~~~~~~ 89 (95)
++.+++++ + +++|+++|+. .+|.|.+ |||++++|||+.+||+||++||||+.+. .+..++.+.
T Consensus 4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~ 77 (144)
T cd04692 4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFK 77 (144)
T ss_pred EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEE
Confidence 44445554 4 7899999865 3689998 5999999999999999999999999764 344455544
No 61
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.63 E-value=5.5e-16 Score=96.00 Aligned_cols=47 Identities=38% Similarity=0.550 Sum_probs=42.4
Q ss_pred EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeE
Q psy11365 37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSL 85 (95)
Q Consensus 37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~ 85 (95)
++||+||+. +.|.||||++++|||+.+||.||++||||+.+.....+
T Consensus 18 ~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~ 64 (130)
T cd03428 18 EYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIV 64 (130)
T ss_pred eEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhh
Confidence 689998865 89999999999999999999999999999998766654
No 62
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.63 E-value=1.3e-15 Score=98.26 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=60.4
Q ss_pred cCCCCcCCccccccccc-cCCceeEEEEEEEEc-CCEEEEEEEeC----CCCCEEec-eeecCCCCCHHHHHHHHHHHHh
Q psy11365 3 YDGPVHNHGLCHVDSVR-RCPTMALFITTACVM-STLILLVTSSR----RPEHWIVP-GGGVEPEEEPAATALREVAEEA 75 (95)
Q Consensus 3 y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~vll~~r~~----~~g~w~~P-gG~ie~gE~~~~aa~REl~EE~ 75 (95)
|+......+........ .....+..+.+++++ ++++||+||.. .||.|.+| ||+++.|| .+||.||++|||
T Consensus 4 ~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~ 81 (158)
T TIGR02150 4 VDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREEL 81 (158)
T ss_pred ECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHH
Confidence 55666666776666665 345566666667776 57999999875 36999997 89999999 499999999999
Q ss_pred CCceeec
Q psy11365 76 GVLGKLG 82 (95)
Q Consensus 76 Gl~~~~~ 82 (95)
|+.+...
T Consensus 82 Gl~~~~~ 88 (158)
T TIGR02150 82 GIPADDV 88 (158)
T ss_pred CCCcccc
Confidence 9987654
No 63
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=3.6e-15 Score=94.96 Aligned_cols=61 Identities=30% Similarity=0.474 Sum_probs=49.4
Q ss_pred EEEEEE-cCCEEEEEEEeC----CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec----eeEEEE
Q psy11365 28 ITTACV-MSTLILLVTSSR----RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG----RSLGVF 88 (95)
Q Consensus 28 ~~~~~~-~~~~vll~~r~~----~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~----~~~~~~ 88 (95)
+.++++ .++++||+||.. .+|.|.+|||++++||++.+||.||++||+|+.+... ++++++
T Consensus 4 v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~ 73 (143)
T cd04694 4 VAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLW 73 (143)
T ss_pred EEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeee
Confidence 344434 468999999974 4689999999999999999999999999999987653 555554
No 64
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=5.8e-15 Score=91.41 Aligned_cols=59 Identities=25% Similarity=0.222 Sum_probs=44.5
Q ss_pred EEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee--ceeEEEEec
Q psy11365 31 ACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL--GRSLGVFEV 90 (95)
Q Consensus 31 ~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~--~~~~~~~~~ 90 (95)
+...+ .+||++|... .|.|.||||++++|||+.+||.||++||||+.+.. ...+..+.+
T Consensus 11 l~~~~-~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~~~~~~ 73 (118)
T cd04674 11 LPVDD-GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFDVRSA 73 (118)
T ss_pred EEECC-CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEEec
Confidence 33444 5666676553 48999999999999999999999999999998753 344444443
No 65
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.60 E-value=1.1e-14 Score=88.50 Aligned_cols=60 Identities=32% Similarity=0.500 Sum_probs=49.5
Q ss_pred EEEc-CCEEEEEEEeC---CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 31 ACVM-STLILLVTSSR---RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 31 ~~~~-~~~vll~~r~~---~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
++.+ ++++||++|+. .+|.|.||+|+++.+|++.+||.||+.||||+.+...+.++.+.+
T Consensus 7 ~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~ 70 (124)
T cd03425 7 IIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEH 70 (124)
T ss_pred EEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEe
Confidence 3344 48999999865 358999999999999999999999999999998876666665543
No 66
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.59 E-value=1.1e-14 Score=87.83 Aligned_cols=64 Identities=39% Similarity=0.606 Sum_probs=51.4
Q ss_pred EEEEEEcC-CEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 28 ITTACVMS-TLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 28 ~~~~~~~~-~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
+.+++.++ +++||++|... +|.|.||+|+++.+|++.++|.||+.||+|+.......++.+.+.
T Consensus 3 ~~~i~~~~~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~ 68 (123)
T cd02883 3 VGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVE 68 (123)
T ss_pred eEEEEECCCCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEee
Confidence 34455555 89999998653 689999999999999999999999999999987655555555443
No 67
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.58 E-value=1.6e-14 Score=95.83 Aligned_cols=56 Identities=32% Similarity=0.438 Sum_probs=47.8
Q ss_pred CCEEEEEEEeC----CCCCEEeceeecCCC-CCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 35 STLILLVTSSR----RPEHWIVPGGGVEPE-EEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 35 ~~~vll~~r~~----~~g~w~~PgG~ie~g-E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
++.+|+.||.. .+|.|+||||++|++ |++.+||+||++||||+.....+.++.+..
T Consensus 43 ~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~ 103 (190)
T PRK10707 43 QPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPP 103 (190)
T ss_pred CCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeee
Confidence 45888888654 358999999999985 689999999999999999988888888763
No 68
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.57 E-value=1.2e-14 Score=95.98 Aligned_cols=56 Identities=34% Similarity=0.308 Sum_probs=47.8
Q ss_pred CCEEEEEEEeCC--------CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 35 STLILLVTSSRR--------PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 35 ~~~vll~~r~~~--------~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
++++||+++.+. +..|+||+|++++||++++||+||++||||+.+.....++.+..
T Consensus 56 ~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~ 119 (185)
T TIGR00052 56 KDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYS 119 (185)
T ss_pred CCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEc
Confidence 478999998652 35788999999999999999999999999999987777776543
No 69
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=3e-14 Score=89.64 Aligned_cols=56 Identities=38% Similarity=0.723 Sum_probs=45.9
Q ss_pred EEEE-cCCEEEEEEEeCC----CCCEEeceeecCCCCCHHHHHHHHHHHHhCCce-eeceeE
Q psy11365 30 TACV-MSTLILLVTSSRR----PEHWIVPGGGVEPEEEPAATALREVAEEAGVLG-KLGRSL 85 (95)
Q Consensus 30 ~~~~-~~~~vll~~r~~~----~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~-~~~~~~ 85 (95)
++++ .++++||+++... ++.|.+|||+++.||++.+||.||++||||+.+ .....+
T Consensus 5 ~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~ 66 (133)
T cd04685 5 VVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPV 66 (133)
T ss_pred EEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceE
Confidence 3444 5789999988652 469999999999999999999999999999987 444444
No 70
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.55 E-value=2.7e-14 Score=93.57 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=48.8
Q ss_pred cccCCceeEEEEE--EEEc-C--CEEEEEEEeC----CCCCEE-eceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365 18 VRRCPTMALFITT--ACVM-S--TLILLVTSSR----RPEHWI-VPGGGVEPEEEPAATALREVAEEAGVLGKL 81 (95)
Q Consensus 18 ~~~~~~~~~~~~~--~~~~-~--~~vll~~r~~----~~g~w~-~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~ 81 (95)
.......+.++.+ ++.+ + ++++++||+. .||.|. +|+|+++.|||+.+||+||++||||+....
T Consensus 25 ~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~ 98 (180)
T cd03676 25 SRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDL 98 (180)
T ss_pred cccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 3333344444443 2333 2 6899999875 479995 999999999999999999999999998764
No 71
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.53 E-value=9e-14 Score=86.92 Aligned_cols=45 Identities=31% Similarity=0.501 Sum_probs=39.3
Q ss_pred CEEEEEEEe------CCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365 36 TLILLVTSS------RRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 36 ~~vll~~r~------~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~ 80 (95)
.++||++|. +..+.|+||||+++.||++.+||+||++||||+.+.
T Consensus 15 ~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 15 IEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred EEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 369999852 345799999999999999999999999999999865
No 72
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.53 E-value=6.4e-14 Score=86.12 Aligned_cols=55 Identities=38% Similarity=0.515 Sum_probs=45.9
Q ss_pred CEEEEEEEeCCCCCEEeceeecCCCCCHHH-HHHHHHHHHhCCcee--eceeEEEEec
Q psy11365 36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAA-TALREVAEEAGVLGK--LGRSLGVFEV 90 (95)
Q Consensus 36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~-aa~REl~EE~Gl~~~--~~~~~~~~~~ 90 (95)
.++|+.++....+.|.||||+++++|++.+ ||+||++||||+.+. ....++.+..
T Consensus 24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~ 81 (161)
T COG0494 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPP 81 (161)
T ss_pred CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccC
Confidence 688888886544599999999999999888 999999999999888 5666665544
No 73
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.52 E-value=1.1e-13 Score=92.69 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=47.6
Q ss_pred CCEEEEEEEeCCC--------CCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 35 STLILLVTSSRRP--------EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 35 ~~~vll~~r~~~~--------g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
+++++|+++.+.+ -.|+||+|.+++||++++||+|||.||||+.+.....++.+..
T Consensus 61 ~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~ 124 (202)
T PRK10729 61 RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLA 124 (202)
T ss_pred CCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEc
Confidence 4699999998764 2589999999999999999999999999999887776665543
No 74
>PRK08999 hypothetical protein; Provisional
Probab=99.50 E-value=2.1e-13 Score=95.74 Aligned_cols=56 Identities=32% Similarity=0.433 Sum_probs=46.8
Q ss_pred cCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 34 MSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 34 ~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
.++++||.||... +|.|+||||+++.||++.+|+.||++||||+.+.....+..+.
T Consensus 15 ~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~ 73 (312)
T PRK08999 15 ADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVR 73 (312)
T ss_pred CCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEE
Confidence 4589999998653 5899999999999999999999999999999876555555443
No 75
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.48 E-value=5.2e-13 Score=88.39 Aligned_cols=41 Identities=34% Similarity=0.525 Sum_probs=37.2
Q ss_pred EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCc
Q psy11365 37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVL 78 (95)
Q Consensus 37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~ 78 (95)
++|+++|. ..|.|.||||+++++|++.+||.||++||||+.
T Consensus 50 ~vLl~~r~-~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 50 QFVAIKRP-DSGEWAIPGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred EEEEEEeC-CCCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence 78888884 468999999999999999999999999999764
No 76
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.48 E-value=1.3e-13 Score=95.53 Aligned_cols=77 Identities=27% Similarity=0.273 Sum_probs=63.8
Q ss_pred ccccccCCceeEEEEEEEEcCCEEEEEEEeC-CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 15 VDSVRRCPTMALFITTACVMSTLILLVTSSR-RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~vll~~r~~-~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
.+....+|....++++++.+++++||.++.+ .+|.|..-.|+||+|||+++|..||++||+|++++.++++++..-|
T Consensus 134 ~cg~~~fPR~dP~vIv~v~~~~~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWP 211 (279)
T COG2816 134 KCGHEHFPRIDPCVIVAVIRGDEILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWP 211 (279)
T ss_pred CCCCccCCCCCCeEEEEEecCCceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCC
Confidence 3445566777777777888888888887766 4689999999999999999999999999999999999988865433
No 77
>PLN02709 nudix hydrolase
Probab=99.47 E-value=2.2e-13 Score=92.15 Aligned_cols=54 Identities=35% Similarity=0.490 Sum_probs=47.5
Q ss_pred EEEEEEEeC----CCCCEEeceeecCCC-CCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 37 LILLVTSSR----RPEHWIVPGGGVEPE-EEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 37 ~vll~~r~~----~~g~w~~PgG~ie~g-E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
++||.+|.. ++|.|.||||+++++ +++.+||+||+.||+||.....+.++.++.
T Consensus 52 ~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~ 110 (222)
T PLN02709 52 RVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEP 110 (222)
T ss_pred EEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCC
Confidence 899999976 469999999999997 478999999999999999887888877654
No 78
>KOG3084|consensus
Probab=99.46 E-value=1.3e-13 Score=96.58 Aligned_cols=63 Identities=24% Similarity=0.245 Sum_probs=49.2
Q ss_pred eEEEEEEEEcCC-EEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEE
Q psy11365 25 ALFITTACVMST-LILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV 87 (95)
Q Consensus 25 ~~~~~~~~~~~~-~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~ 87 (95)
.+++..++..++ +.||.|.+++ +|.|..++|.+|+|||+++|++||++||+|++++..++...
T Consensus 188 PvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~as 252 (345)
T KOG3084|consen 188 PVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVAS 252 (345)
T ss_pred CeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeec
Confidence 344444444444 6777766554 48999999999999999999999999999999988775544
No 79
>KOG2839|consensus
Probab=99.46 E-value=2.6e-13 Score=85.77 Aligned_cols=65 Identities=54% Similarity=0.847 Sum_probs=53.4
Q ss_pred eEEEEEEEEc--CC--EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 25 ALFITTACVM--ST--LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 25 ~~~~~~~~~~--~~--~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
.+++.+++.+ +. +|||+..++.+..|.+|+|++|++|+..+||.||.+||.|+.....+.++.+.
T Consensus 9 r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~ 77 (145)
T KOG2839|consen 9 RLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFE 77 (145)
T ss_pred EEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchh
Confidence 4445555543 33 89999987778899999999999999999999999999999988888666554
No 80
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.41 E-value=9.6e-13 Score=82.32 Aligned_cols=41 Identities=37% Similarity=0.550 Sum_probs=35.4
Q ss_pred EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCce
Q psy11365 37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLG 79 (95)
Q Consensus 37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~ 79 (95)
++|+.+. .. +.|+||||++++|||+.+||.||++||||+.+
T Consensus 15 ~ll~~r~-~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 15 ELLVFEH-PL-AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEc-CC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 5666654 33 56999999999999999999999999999986
No 81
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.37 E-value=4.5e-12 Score=84.21 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=45.1
Q ss_pred CCEEEEEEEeCCC-------C--CEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 35 STLILLVTSSRRP-------E--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 35 ~~~vll~~r~~~~-------g--~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
+++++|+++.+.+ + .|+||+|.++++ ++++||+|||+||||+.+.....++.+.
T Consensus 57 ~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~ 119 (191)
T PRK15009 57 KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELY 119 (191)
T ss_pred CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEE
Confidence 5799999998754 3 578999999976 6999999999999999988777666553
No 82
>PLN02791 Nudix hydrolase homolog
Probab=99.28 E-value=2.1e-11 Score=94.33 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=60.2
Q ss_pred CCCCcCCcc-ccccccccCCceeEEEEEEEEc--CCEEEEEEEeC----CCCCEEe-ceeecCCCCCHHHHHHHHHHHHh
Q psy11365 4 DGPVHNHGL-CHVDSVRRCPTMALFITTACVM--STLILLVTSSR----RPEHWIV-PGGGVEPEEEPAATALREVAEEA 75 (95)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~vll~~r~~----~~g~w~~-PgG~ie~gE~~~~aa~REl~EE~ 75 (95)
+......|. ..+.........+.++.+++++ ++++||+||+. .||.|.+ |||+++.|||..+||+||+.||+
T Consensus 10 De~g~~~G~~~~R~evH~~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EEL 89 (770)
T PLN02791 10 TAAGEKTGVSKPRGEVHRDGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEEL 89 (770)
T ss_pred CCCCCCCCccccHHhhccCCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHh
Confidence 334444454 2333344445566677777766 47999999976 5799997 79999999999999999999999
Q ss_pred CCcee--eceeEEE
Q psy11365 76 GVLGK--LGRSLGV 87 (95)
Q Consensus 76 Gl~~~--~~~~~~~ 87 (95)
||.+. ...+++.
T Consensus 90 GI~l~~~~l~~l~~ 103 (770)
T PLN02791 90 GIILPKDAFELLFV 103 (770)
T ss_pred CCCCChhheeeeee
Confidence 99754 2344444
No 83
>PLN03143 nudix hydrolase; Provisional
Probab=99.28 E-value=2.2e-11 Score=85.43 Aligned_cols=44 Identities=32% Similarity=0.413 Sum_probs=38.0
Q ss_pred EEEEEEEeCCC---CCEEeceeecCC-CCCHHHHHHHHHHHHhCCcee
Q psy11365 37 LILLVTSSRRP---EHWIVPGGGVEP-EEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 37 ~vll~~r~~~~---g~w~~PgG~ie~-gE~~~~aa~REl~EE~Gl~~~ 80 (95)
+++|+++.+.+ -.|+||+|.+++ +|++.+||+||++||||+.+.
T Consensus 144 ~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~ 191 (291)
T PLN03143 144 YAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLK 191 (291)
T ss_pred EEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccc
Confidence 38999988743 378899999997 489999999999999999754
No 84
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.27 E-value=3.9e-11 Score=82.51 Aligned_cols=70 Identities=13% Similarity=0.028 Sum_probs=48.7
Q ss_pred CCceeEEEEEEEEc-CCEEEEEEEeC----CCCCEEec-eeecCCCCC-----------------HHHHHHHHHHHHhCC
Q psy11365 21 CPTMALFITTACVM-STLILLVTSSR----RPEHWIVP-GGGVEPEEE-----------------PAATALREVAEEAGV 77 (95)
Q Consensus 21 ~~~~~~~~~~~~~~-~~~vll~~r~~----~~g~w~~P-gG~ie~gE~-----------------~~~aa~REl~EE~Gl 77 (95)
....+.++.+++++ ++++||+||+. .||.|... +|++..||+ ..+||.|||+|||||
T Consensus 52 ~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI 131 (247)
T PLN02552 52 RGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGI 131 (247)
T ss_pred CCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCC
Confidence 34556666666666 57999999976 47899755 465555422 689999999999999
Q ss_pred ceee-----ceeEEEEec
Q psy11365 78 LGKL-----GRSLGVFEV 90 (95)
Q Consensus 78 ~~~~-----~~~~~~~~~ 90 (95)
.... +.+++.+.+
T Consensus 132 ~~~~~~~~~l~~~~~~~y 149 (247)
T PLN02552 132 PAEDVPVDQFTFLTRLHY 149 (247)
T ss_pred CccccccccceeeeEEEE
Confidence 8542 445554433
No 85
>KOG3041|consensus
Probab=99.13 E-value=5.2e-10 Score=74.24 Aligned_cols=58 Identities=29% Similarity=0.383 Sum_probs=45.1
Q ss_pred ceeEEEEEEEEcCC--EEEEEEEeCCC-C--CEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365 23 TMALFITTACVMST--LILLVTSSRRP-E--HWIVPGGGVEPEEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 23 ~~~~~~~~~~~~~~--~vll~~r~~~~-g--~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~ 80 (95)
...+.+.+++-.++ .++|+++.+-| | ..+||+|-++.||+++.||.|||+||||+.-.
T Consensus 73 ~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gk 135 (225)
T KOG3041|consen 73 ADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGK 135 (225)
T ss_pred CCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccce
Confidence 34445555555555 68888887755 5 45699999999999999999999999999744
No 86
>KOG3069|consensus
Probab=98.92 E-value=2.2e-09 Score=72.81 Aligned_cols=54 Identities=35% Similarity=0.488 Sum_probs=44.7
Q ss_pred CEEEEEEEeC----CCCCEEeceeecCCC-CCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 36 TLILLVTSSR----RPEHWIVPGGGVEPE-EEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 36 ~~vll~~r~~----~~g~w~~PgG~ie~g-E~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
.++||.||.+ ++|.-.||||+.+.. +|..++|.||..||+|+.....++++.+.
T Consensus 58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~ 116 (246)
T KOG3069|consen 58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALP 116 (246)
T ss_pred eEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhcc
Confidence 3899999876 468999999999985 57888999999999999887666666544
No 87
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.82 E-value=4.7e-08 Score=58.93 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=40.3
Q ss_pred EEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhC
Q psy11365 28 ITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAG 76 (95)
Q Consensus 28 ~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~G 76 (95)
+++++.+++++||.||... +|.|+||+|.++.+++.+++..|++.++.+
T Consensus 6 ~~~ii~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~ 57 (118)
T cd03431 6 AVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALR 57 (118)
T ss_pred EEEEEecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhC
Confidence 3444455789999999653 589999999999999999999999998875
No 88
>KOG0648|consensus
Probab=98.76 E-value=1.1e-08 Score=71.66 Aligned_cols=60 Identities=25% Similarity=0.323 Sum_probs=48.7
Q ss_pred CCceeEEEEEEEEcC-CEEEEEEEeC----CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365 21 CPTMALFITTACVMS-TLILLVTSSR----RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 21 ~~~~~~~~~~~~~~~-~~vll~~r~~----~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~ 80 (95)
.....+.+.+++++. ++||+++... ..|.|.+|+|.|+++|++.++|.||++||||++..
T Consensus 111 ~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~e 175 (295)
T KOG0648|consen 111 NASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTE 175 (295)
T ss_pred chhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchh
Confidence 344556677777775 4999998644 35899999999999999999999999999998644
No 89
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.54 E-value=2.1e-07 Score=58.24 Aligned_cols=44 Identities=32% Similarity=0.477 Sum_probs=37.3
Q ss_pred EEEEEEEeC------CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365 37 LILLVTSSR------RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 37 ~vll~~r~~------~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~ 80 (95)
.|||++.-. +.|.|.+|.|....||++..||+||..||+||.+.
T Consensus 19 ~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 19 DVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD 68 (161)
T ss_pred EEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence 566665421 34899999999999999999999999999999875
No 90
>PLN02839 nudix hydrolase
Probab=98.43 E-value=8.1e-07 Score=64.12 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=45.5
Q ss_pred CEEEEEEEeC----CCCCEE-eceeecCCCCCHHHHHHHHHHHHhCCcee---eceeEEEEecC
Q psy11365 36 TLILLVTSSR----RPEHWI-VPGGGVEPEEEPAATALREVAEEAGVLGK---LGRSLGVFEVR 91 (95)
Q Consensus 36 ~~vll~~r~~----~~g~w~-~PgG~ie~gE~~~~aa~REl~EE~Gl~~~---~~~~~~~~~~~ 91 (95)
.++++.||+. +||.|. +.+|.+..||++.+++.||..||+||... .....|++.+.
T Consensus 218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~ 281 (372)
T PLN02839 218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYM 281 (372)
T ss_pred eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEE
Confidence 3688888865 579997 88999999999999999999999999754 44556666654
No 91
>KOG4195|consensus
Probab=98.29 E-value=8.5e-07 Score=60.09 Aligned_cols=38 Identities=39% Similarity=0.619 Sum_probs=33.3
Q ss_pred EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHh
Q psy11365 37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEA 75 (95)
Q Consensus 37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~ 75 (95)
+++.+|| ...|.|.+|||.+++||.+-.+++||+.||.
T Consensus 140 e~vavkr-~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKR-PDNGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred EEEEEec-CCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 5667776 4568999999999999999999999999995
No 92
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.20 E-value=1.8e-06 Score=56.50 Aligned_cols=69 Identities=20% Similarity=0.166 Sum_probs=52.0
Q ss_pred eEEEEEEEEc-CCEEEEEEEeC----CCCCEE-eceeecCCCCCHHHHHHHHHHHHhCCcee---eceeEEEEecCCC
Q psy11365 25 ALFITTACVM-STLILLVTSSR----RPEHWI-VPGGGVEPEEEPAATALREVAEEAGVLGK---LGRSLGVFEVRPK 93 (95)
Q Consensus 25 ~~~~~~~~~~-~~~vll~~r~~----~~g~w~-~PgG~ie~gE~~~~aa~REl~EE~Gl~~~---~~~~~~~~~~~~~ 93 (95)
+....+++++ +|++||.||.. .|+.|. -.+|+--+|||..+|++|-+.+|+||+.. ..+++..+.|...
T Consensus 33 HrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~ 110 (185)
T COG1443 33 HRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAA 110 (185)
T ss_pred HhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEecc
Confidence 4444555555 78999999864 578998 67899999999999999999999999876 3344444444433
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.09 E-value=7.5e-06 Score=49.66 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=35.3
Q ss_pred EEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 29 TTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 29 ~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
.+++..++++||.||... .|.|+||.-..+...+ .+.+.+.+.+..|+.+...+.++.+.+
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~v~H 65 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSVEPLGTVKH 65 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-S-SEEEEE
T ss_pred EEEEEeCCEEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhheecCcEEE
Confidence 445567899999999764 4899999988874333 555666676788887665555555443
No 94
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.36 E-value=0.0044 Score=41.29 Aligned_cols=54 Identities=22% Similarity=0.411 Sum_probs=37.3
Q ss_pred EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCce------eeceeEEEEecCC
Q psy11365 37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLG------KLGRSLGVFEVRP 92 (95)
Q Consensus 37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~------~~~~~~~~~~~~~ 92 (95)
+|||.|... ..|.+|||...+||+..++++|.|.+-++..- ...++++.+.-++
T Consensus 59 HvLLLq~~~--~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp~ 118 (188)
T PF13869_consen 59 HVLLLQIGN--TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRPN 118 (188)
T ss_dssp EEEEEEETT--TEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEESS
T ss_pred EEEEEeccC--ccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCCC
Confidence 799998633 38999999999999999999999999998752 2446777665443
No 95
>KOG2937|consensus
Probab=97.27 E-value=4.7e-05 Score=54.27 Aligned_cols=44 Identities=32% Similarity=0.502 Sum_probs=38.1
Q ss_pred CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365 36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~ 80 (95)
.++||++... ...|.||.|++...|+...||.||+.||||.+..
T Consensus 95 sr~llv~g~q-a~sw~fprgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 95 SRCLLVKGWQ-ASSWSFPRGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred hhhheeecee-cccccccCccccccchhhhcchhcccchhhcCHH
Confidence 4888887643 3469999999999999999999999999999864
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.36 E-value=0.025 Score=37.04 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=43.7
Q ss_pred EEEEEEEcCCEEEEEEEeCCC------CCEEec-eeecCCCC---CHHHH----HHHHHHHHhCCc---eeeceeEEEEe
Q psy11365 27 FITTACVMSTLILLVTSSRRP------EHWIVP-GGGVEPEE---EPAAT----ALREVAEEAGVL---GKLGRSLGVFE 89 (95)
Q Consensus 27 ~~~~~~~~~~~vll~~r~~~~------g~w~~P-gG~ie~gE---~~~~a----a~REl~EE~Gl~---~~~~~~~~~~~ 89 (95)
+-++++.+.++||+..|...+ +.+.+- ||++..++ +..+. +.|||.||.++. ...+.++|-+.
T Consensus 63 IpYvvi~~edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlIN 142 (203)
T COG4112 63 IPYVVIMDEDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIN 142 (203)
T ss_pred ccEEEEecCCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeec
Confidence 344455567799999997654 355543 89998764 44443 679999999997 44566776654
Q ss_pred c
Q psy11365 90 V 90 (95)
Q Consensus 90 ~ 90 (95)
.
T Consensus 143 d 143 (203)
T COG4112 143 D 143 (203)
T ss_pred C
Confidence 4
No 97
>KOG1689|consensus
Probab=96.22 E-value=0.014 Score=38.46 Aligned_cols=53 Identities=25% Similarity=0.409 Sum_probs=39.3
Q ss_pred CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhC------CceeeceeEEEEec
Q psy11365 36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAG------VLGKLGRSLGVFEV 90 (95)
Q Consensus 36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~G------l~~~~~~~~~~~~~ 90 (95)
.+|||.|- ..-.+.+|||..++||+-.+.++|-+-|-+| .+....+.++...-
T Consensus 84 PHvLLLQi--g~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr~dg~~~dwtv~ecig~WWR 142 (221)
T KOG1689|consen 84 PHVLLLQI--GNTFFKLPGGRLRPGEDEADGLKRLLTESLGRSDGLVIDWTVGECIGNWWR 142 (221)
T ss_pred CeEEEEee--CCEEEecCCCccCCCcchhHHHHHHHHHHhcccccccccccHhhhhhcccC
Confidence 47887764 2347789999999999999999999999999 33334455554443
No 98
>KOG4313|consensus
Probab=95.12 E-value=0.034 Score=38.75 Aligned_cols=43 Identities=28% Similarity=0.287 Sum_probs=37.3
Q ss_pred EEEEEEEeC----CCCCEE-eceeecCCCCCHHHHHHHHHHHHhCCce
Q psy11365 37 LILLVTSSR----RPEHWI-VPGGGVEPEEEPAATALREVAEEAGVLG 79 (95)
Q Consensus 37 ~vll~~r~~----~~g~w~-~PgG~ie~gE~~~~aa~REl~EE~Gl~~ 79 (95)
++.+.||++ .||.|. +.+|.+.-|-.+.++++.|..||+.+..
T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~ 196 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPS 196 (306)
T ss_pred EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCch
Confidence 677888765 467887 7899999999999999999999999976
No 99
>KOG4432|consensus
Probab=95.04 E-value=0.033 Score=39.84 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=34.9
Q ss_pred EeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 51 IVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 51 ~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
++.+|.|++..|+.+-|..|+.||.|.++...+++.++++
T Consensus 82 elc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~ 121 (405)
T KOG4432|consen 82 ELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITF 121 (405)
T ss_pred eeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEE
Confidence 3569999999999999999999999999987777777664
No 100
>PRK10880 adenine DNA glycosylase; Provisional
Probab=94.92 E-value=0.08 Score=38.48 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=26.4
Q ss_pred EEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCc
Q psy11365 30 TACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVL 78 (95)
Q Consensus 30 ~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~ 78 (95)
.++.+++++||.||... .|.|+||.. +..+ ..++..|+.|+.
T Consensus 236 ~~~~~~~~~~l~~r~~~gl~~gl~~fP~~--~~~~-----~~~~~~~~~~~~ 280 (350)
T PRK10880 236 LLLQHGDEVWLEQRPPSGLWGGLFCFPQF--ADEE-----ELRQWLAQRGIA 280 (350)
T ss_pred EEEEECCEEEEEECCccChhhccccCCCC--cchh-----hHHHHHHhcCCc
Confidence 34446789999998654 489999963 2211 234455666664
No 101
>KOG4548|consensus
Probab=93.88 E-value=0.12 Score=35.87 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=34.9
Q ss_pred EEEEEEEe-CCCCCEEeceeec-CCCCCHHHHHHHHHHHHhCCc
Q psy11365 37 LILLVTSS-RRPEHWIVPGGGV-EPEEEPAATALREVAEEAGVL 78 (95)
Q Consensus 37 ~vll~~r~-~~~g~w~~PgG~i-e~gE~~~~aa~REl~EE~Gl~ 78 (95)
-+||++++ ...+.|.||-+.. ++++++..+|.|.|++-.|=.
T Consensus 140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~ 183 (263)
T KOG4548|consen 140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGEN 183 (263)
T ss_pred EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcch
Confidence 47788755 3457999999999 899999999999999887743
No 102
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=92.53 E-value=0.52 Score=33.15 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=17.3
Q ss_pred cCCEEEEEEEeCC---CCCEEecee
Q psy11365 34 MSTLILLVTSSRR---PEHWIVPGG 55 (95)
Q Consensus 34 ~~~~vll~~r~~~---~g~w~~PgG 55 (95)
.++++||.||... .|.|+||+.
T Consensus 237 ~~~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 237 YDGEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred CCCeEEEEeCCCCchhhccccCCCC
Confidence 4689999998654 489999973
No 103
>KOG0142|consensus
Probab=90.08 E-value=0.14 Score=34.58 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=37.5
Q ss_pred eEEEEEEEEc-CCEEEEEEEeC----CCCCEE-----ec----eeecC-CCCCHHHHHHHHHHHHhCCceee
Q psy11365 25 ALFITTACVM-STLILLVTSSR----RPEHWI-----VP----GGGVE-PEEEPAATALREVAEEAGVLGKL 81 (95)
Q Consensus 25 ~~~~~~~~~~-~~~vll~~r~~----~~g~w~-----~P----gG~ie-~gE~~~~aa~REl~EE~Gl~~~~ 81 (95)
+....+++++ ++++||+||+. .|+.|. -| +...+ .+.....||+|-|.-|+||..+.
T Consensus 52 HRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~ 123 (225)
T KOG0142|consen 52 HRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEE 123 (225)
T ss_pred hheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccc
Confidence 3344445554 68999999875 357776 22 22211 13368899999999999997653
No 104
>PRK13910 DNA glycosylase MutY; Provisional
Probab=89.19 E-value=0.74 Score=32.67 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=18.2
Q ss_pred EEEcCCEEEEEEEeC--CCCCEEecee
Q psy11365 31 ACVMSTLILLVTSSR--RPEHWIVPGG 55 (95)
Q Consensus 31 ~~~~~~~vll~~r~~--~~g~w~~PgG 55 (95)
++.+++++||.||.. ..|.|+||..
T Consensus 192 ~~~~~~~~ll~kr~~~l~~gl~~fP~~ 218 (289)
T PRK13910 192 VVIQNNQIALEKIEQKLYLGMHHFPNL 218 (289)
T ss_pred EEEECCEEEEEECCCchhcccccCCCC
Confidence 444678999998843 2489999963
No 105
>PF14443 DBC1: DBC1
Probab=84.99 E-value=1.2 Score=28.01 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=26.3
Q ss_pred CCCEE--eceeecCCC-CCHHHHHHHHHHHHhCCcee
Q psy11365 47 PEHWI--VPGGGVEPE-EEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 47 ~g~w~--~PgG~ie~g-E~~~~aa~REl~EE~Gl~~~ 80 (95)
+|.|. +=||-...+ .++..+|+|=+++-|||+..
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 46776 456666553 47899999999999999875
No 106
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=83.12 E-value=1.4 Score=22.13 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=11.9
Q ss_pred eeecCCCCCHHHHHHHHHHHHh
Q psy11365 54 GGGVEPEEEPAATALREVAEEA 75 (95)
Q Consensus 54 gG~ie~gE~~~~aa~REl~EE~ 75 (95)
||-..+|--+..++.||+-||+
T Consensus 15 ggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp --------S-HHHHHHHHHHHH
T ss_pred cccCCCCCCCchHHHHHHHHHH
Confidence 6777788888899999999996
No 107
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=73.40 E-value=2.9 Score=22.72 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=18.0
Q ss_pred CCEEeceeecCCCCCHHHHHHHHHHH
Q psy11365 48 EHWIVPGGGVEPEEEPAATALREVAE 73 (95)
Q Consensus 48 g~w~~PgG~ie~gE~~~~aa~REl~E 73 (95)
..|-+|||.+-.+-.-++-+..|+.+
T Consensus 22 ~GWl~Pgg~vi~NPlkAqR~AE~~n~ 47 (60)
T PF07026_consen 22 NGWLMPGGKVITNPLKAQRLAEELNS 47 (60)
T ss_pred ceeecCCCeeEcCHHHHHHHHHHHHh
Confidence 46999999998876555544444444
No 108
>KOG4432|consensus
Probab=70.24 E-value=4 Score=29.54 Aligned_cols=33 Identities=24% Similarity=0.127 Sum_probs=27.6
Q ss_pred EEeceeecCCCCCHHHHHHHHHHHHhCCceeec
Q psy11365 50 WIVPGGGVEPEEEPAATALREVAEEAGVLGKLG 82 (95)
Q Consensus 50 w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~ 82 (95)
.++..|.++..-+..+-|.||..||.|.++...
T Consensus 286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~ 318 (405)
T KOG4432|consen 286 LELCAGRVDDPFSDPEKAARESVEECGYDLPED 318 (405)
T ss_pred eeeecccCCCCcccHHHHHHHHHHHhCCCCCHH
Confidence 345688888889999999999999999987643
No 109
>PF14044 NETI: NETI protein
Probab=59.65 E-value=9 Score=20.69 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=16.0
Q ss_pred ecCCCCCHHHHHHHHHHHHhCCc
Q psy11365 56 GVEPEEEPAATALREVAEEAGVL 78 (95)
Q Consensus 56 ~ie~gE~~~~aa~REl~EE~Gl~ 78 (95)
.++.+||+.+|+.|- .+-|..
T Consensus 3 eV~enETI~~CL~RM--~~eGY~ 23 (57)
T PF14044_consen 3 EVEENETISDCLARM--KKEGYM 23 (57)
T ss_pred eccCCCcHHHHHHHH--HHcCCC
Confidence 467899999999993 344664
No 110
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=58.60 E-value=6.6 Score=28.82 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=19.6
Q ss_pred ecCCCCCHHHHHHHHHHHHhCCce
Q psy11365 56 GVEPEEEPAATALREVAEEAGVLG 79 (95)
Q Consensus 56 ~ie~gE~~~~aa~REl~EE~Gl~~ 79 (95)
.++..+-..+.+.|||+||+++-+
T Consensus 408 ~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 408 GVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred CCChhhcccHHHHHHHHHhcCcce
Confidence 466677778899999999999753
No 111
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=58.02 E-value=9.3 Score=27.92 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=23.5
Q ss_pred EEEEEEEcCCEEEEEEEeCC---CCCEEeceeecCC
Q psy11365 27 FITTACVMSTLILLVTSSRR---PEHWIVPGGGVEP 59 (95)
Q Consensus 27 ~~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~ 59 (95)
...++...+++++|.+|... .|.|+||....+.
T Consensus 238 ~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 238 AAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred eeEEEEccCcchhhhhCcccCceecccccccccccc
Confidence 34444456789999988664 3899999876654
No 112
>KOG2937|consensus
Probab=52.09 E-value=5.1 Score=29.16 Aligned_cols=35 Identities=31% Similarity=0.635 Sum_probs=31.6
Q ss_pred CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365 46 RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 46 ~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~ 80 (95)
.+..|.||.|++..||-...++.++-.||+++...
T Consensus 262 ~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 262 KPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred ccccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 45799999999999999999999999999998653
No 113
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=49.51 E-value=80 Score=22.54 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=37.9
Q ss_pred EcCC-EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHH-HHHHhCCceeeceeEEEEecCCCC
Q psy11365 33 VMST-LILLVTSSRRPEHWIVPGGGVEPEEEPAATALRE-VAEEAGVLGKLGRSLGVFEVRPKV 94 (95)
Q Consensus 33 ~~~~-~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~RE-l~EE~Gl~~~~~~~~~~~~~~~~~ 94 (95)
.+++ .||-+... =.+|.|-.++.-...++-.|. +.+.|+....+++.+.+|-+.+|+
T Consensus 33 ~~~~p~VLtV~q~-----~aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQLYTF~Dr~R~ 91 (322)
T COG4111 33 TDGGPRVLTVRQG-----AALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQLYTFADRDRR 91 (322)
T ss_pred cCCCceEEEeccc-----ccCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhhhhhcccccc
Confidence 3444 66666432 229999999876555555555 456689888888888887766553
No 114
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=45.12 E-value=51 Score=19.97 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=23.7
Q ss_pred eecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 55 GGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 55 G~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
..+++||++.+++..-++|+ ++.......+|.+.
T Consensus 6 ~rl~~Gedl~~~l~~~~~~~-~i~~~~is~iGsl~ 39 (120)
T PF03479_consen 6 IRLDPGEDLLESLEAFAREH-GIRSGVISGIGSLS 39 (120)
T ss_dssp EEEETTSBHHHHHHHHHHHH-T-SSEEEEEEEEEE
T ss_pred EEECCCCHHHHHHHHHHHHC-CCcEEEEEEEeEEe
Confidence 35789999999877655544 88777667777654
No 115
>PRK07198 hypothetical protein; Validated
Probab=45.02 E-value=38 Score=25.49 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=29.1
Q ss_pred cCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCce
Q psy11365 34 MSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLG 79 (95)
Q Consensus 34 ~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~ 79 (95)
.++.+.+.|-.-. -.|.+||=.-..|= .+..++|-|+|+||=..
T Consensus 160 ~~g~~~vtk~av~-pvwylpgva~rfg~-~e~~lrr~lfe~t~g~~ 203 (418)
T PRK07198 160 ANGDVVVTKAAIE-PVWYLPGVAERFGV-SETDLRRTLFEQTGGMF 203 (418)
T ss_pred CCCcEEEEEeeec-ccccccchHHHcCC-CHHHHHHHHHHHcCCCC
Confidence 3455555554333 48999985544543 35678899999999653
No 116
>PF13014 KH_3: KH domain
Probab=44.34 E-value=23 Score=17.22 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCceeece
Q psy11365 67 ALREVAEEAGVLGKLGR 83 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~~ 83 (95)
-.+++++++|..+...+
T Consensus 12 ~I~~I~~~tg~~I~i~~ 28 (43)
T PF13014_consen 12 TIKEIREETGAKIQIPP 28 (43)
T ss_pred HHHHHHHHhCcEEEECC
Confidence 37899999999887655
No 117
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=41.75 E-value=26 Score=19.54 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=14.2
Q ss_pred eceeecCCCCCHHHHHHH
Q psy11365 52 VPGGGVEPEEEPAATALR 69 (95)
Q Consensus 52 ~PgG~ie~gE~~~~aa~R 69 (95)
.|...|..||+++.|+.|
T Consensus 1 M~~v~V~ene~~d~ALrr 18 (67)
T COG0828 1 MPQVKVRENEPLDKALRR 18 (67)
T ss_pred CCeeeecCCChHHHHHHH
Confidence 367788899999988764
No 118
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=36.31 E-value=22 Score=23.76 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCceeeceeEEEE
Q psy11365 67 ALREVAEEAGVLGKLGRSLGVF 88 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~~~~~~~ 88 (95)
|..|++||+|+.+-.+...+.+
T Consensus 159 aVk~lr~~hgI~VISL~M~GSV 180 (218)
T COG1707 159 AVKELREEHGIPVISLNMFGSV 180 (218)
T ss_pred HHHHHHHhcCCeEEEeccCCCC
Confidence 5789999999987666555544
No 119
>KOG1202|consensus
Probab=33.84 E-value=41 Score=29.52 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=23.7
Q ss_pred CEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeE
Q psy11365 49 HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSL 85 (95)
Q Consensus 49 ~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~ 85 (95)
...||.|. .++.++||+++|+|+......++
T Consensus 269 GvTfP~G~------~Q~qLi~e~Yse~Gl~P~sv~Yv 299 (2376)
T KOG1202|consen 269 GVTFPSGD------MQEQLIRETYSEAGLNPESVVYV 299 (2376)
T ss_pred CccCCCcH------HHHHHHHHHHHhcCCCcccEEEE
Confidence 45588776 57889999999999987654443
No 120
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=30.98 E-value=48 Score=17.56 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=12.9
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-.|++.|++|..+...
T Consensus 23 ~ik~I~~~tg~~I~i~ 38 (61)
T cd02393 23 TIKKIIEETGVKIDIE 38 (61)
T ss_pred HHHHHHHHHCCEEEeC
Confidence 4788999999987643
No 121
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=30.20 E-value=89 Score=17.21 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=22.8
Q ss_pred ecCCCCCHHHHHHHHHHHHhCCceeeceeEE
Q psy11365 56 GVEPEEEPAATALREVAEEAGVLGKLGRSLG 86 (95)
Q Consensus 56 ~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~ 86 (95)
.+++.+|+. .+++.+.+.+|+.++...+++
T Consensus 15 ~v~~~~Tv~-~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 15 TTLSEDTVL-DLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred EECCCCCHH-HHHHHHHHHHCCCHHHEEEEe
Confidence 355666666 589999999999888777775
No 122
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=29.75 E-value=1.3e+02 Score=18.03 Aligned_cols=22 Identities=18% Similarity=0.071 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHHHHhCCcee
Q psy11365 59 PEEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 59 ~gE~~~~aa~REl~EE~Gl~~~ 80 (95)
.|+++.+.+.+|+.+.+|..+.
T Consensus 86 ~g~~l~~~L~~el~~~~g~~v~ 107 (109)
T PF01491_consen 86 DGEELFELLEEELSQQLGEPVD 107 (109)
T ss_dssp TTEBHHHHHHHHHHHHHTS---
T ss_pred CCchHHHHHHHHHHHHhCCCee
Confidence 6789999999999999998764
No 123
>KOG0648|consensus
Probab=29.41 E-value=24 Score=25.30 Aligned_cols=32 Identities=19% Similarity=0.055 Sum_probs=29.0
Q ss_pred CEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365 49 HWIVPGGGVEPEEEPAATALREVAEEAGVLGKL 81 (95)
Q Consensus 49 ~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~ 81 (95)
.|.. .|+.+-++++.+++.|++.++++.....
T Consensus 56 ~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf~~ 87 (295)
T KOG0648|consen 56 KWYL-QGRKGIWLKLPEELARLVEEAAKYGFDY 87 (295)
T ss_pred HHHH-ccCcccceechHHHHhHHHHHHhcCcEE
Confidence 7888 9999999999999999999999986553
No 124
>PF03068 PAD: Protein-arginine deiminase (PAD); InterPro: IPR013530 In the presence of calcium ions, Protein-arginine deiminase (PAD) enzymes 3.5.3.15 from EC catalyse the post-translational modification reaction responsible for the formation of citrulline residues from protein-bound arginine residues []. Four PAD isotypes of PAD have been identified in mammals, a fifth may also exist. Non-mammalian vertebrates appear to have only a single PAD enzyme. All known natural substrates of PAD are proteins known to have an important structural function, such as keratin (PAD1), intermediate filaments or proteins associated with intermediate filaments. Citrulination may have consequences for the structural integrity and interactions of these proteins. Physiological levels of calcium appear to be too low to activate these enzymes suggesting a role between PAD activation and loss of calcium homeostasis during terminal differentiation and cell death (apoptosis). ; GO: 0004668 protein-arginine deiminase activity, 0005509 calcium ion binding, 0005737 cytoplasm; PDB: 3B1U_A 3B1T_A 2DW5_A 3APN_A 1WD9_A 2DEX_X 1WD8_A 2DEY_X 2DEW_X 1WDA_A ....
Probab=28.96 E-value=36 Score=25.36 Aligned_cols=30 Identities=30% Similarity=0.264 Sum_probs=22.1
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhCCceeec
Q psy11365 53 PGGGVEPEEEPAATALREVAEEAGVLGKLG 82 (95)
Q Consensus 53 PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~ 82 (95)
|.|-+-.|....+.+.|+++|-+|+++...
T Consensus 323 P~GP~i~G~d~~e~~v~~~~~~~G~~v~fi 352 (385)
T PF03068_consen 323 PFGPVIDGRDCLEEAVRELLEPAGLNVTFI 352 (385)
T ss_dssp ----EETTEEHHHHHHHHHHGGGT-EEEEE
T ss_pred CcCCccCCEehHHHHHHHHHhhcCCEEEEE
Confidence 457677889999999999999999998644
No 125
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=28.87 E-value=1.1e+02 Score=16.87 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=15.9
Q ss_pred ec--eeecCCCCCHHHHHHHHHHHHh
Q psy11365 52 VP--GGGVEPEEEPAATALREVAEEA 75 (95)
Q Consensus 52 ~P--gG~ie~gE~~~~aa~REl~EE~ 75 (95)
+| .|....|+|+++|.. +++|=+
T Consensus 20 ~Pdlpgc~s~G~T~eea~~-n~~eai 44 (73)
T COG1598 20 VPDLPGCHSQGETLEEALQ-NAKEAI 44 (73)
T ss_pred eCCCCCccccCCCHHHHHH-HHHHHH
Confidence 55 688889999999743 344433
No 126
>KOG1794|consensus
Probab=26.94 E-value=1.5e+02 Score=21.68 Aligned_cols=51 Identities=27% Similarity=0.309 Sum_probs=28.5
Q ss_pred cCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee-ceeEEE
Q psy11365 34 MSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL-GRSLGV 87 (95)
Q Consensus 34 ~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~-~~~~~~ 87 (95)
+++.++-.--....++|..+- +.--+-.+.+.||.+|+.|++.+. ++.++.
T Consensus 22 ~~~~~~~~a~~~~Tnh~~ig~---~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL 73 (336)
T KOG1794|consen 22 EDGTILGRAVGGGTNHWLIGS---TTCASRIEDMIREAKEKAGWDKKGPLRSLGL 73 (336)
T ss_pred CCCCEeeEeeccccccccCCc---hHHHHHHHHHHHHHHhhcCCCccCccceeee
Confidence 344444332222345777661 111123455789999999998764 555543
No 127
>PF13680 DUF4152: Protein of unknown function (DUF4152)
Probab=25.79 E-value=60 Score=21.78 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhCCcee
Q psy11365 65 ATALREVAEEAGVLGK 80 (95)
Q Consensus 65 ~aa~REl~EE~Gl~~~ 80 (95)
|-+.+-.+||||+++-
T Consensus 117 QPLAkkfWEetgiEIl 132 (227)
T PF13680_consen 117 QPLAKKFWEETGIEIL 132 (227)
T ss_pred HHHHHHHHHhhCcEEE
Confidence 4455668999999764
No 128
>PRK00270 rpsU 30S ribosomal protein S21; Reviewed
Probab=25.38 E-value=78 Score=17.29 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=15.3
Q ss_pred ceeecCCCCCHHHHHHH--HHHHHhCC
Q psy11365 53 PGGGVEPEEEPAATALR--EVAEEAGV 77 (95)
Q Consensus 53 PgG~ie~gE~~~~aa~R--El~EE~Gl 77 (95)
|.-.+..||+++.|+.| -..+..|+
T Consensus 2 ~~V~V~~~e~ie~Alrrfkr~~~k~gi 28 (64)
T PRK00270 2 PQVKVRENESIDKALRRFKRKVEKAGI 28 (64)
T ss_pred CeeEeCCCChHHHHHHHHHHHHHHcch
Confidence 44567788988888653 22344454
No 129
>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription]
Probab=24.67 E-value=51 Score=21.28 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.1
Q ss_pred ecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365 56 GVEPEEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 56 ~ie~gE~~~~aa~REl~EE~Gl~~~ 80 (95)
.++.||.+..++++-+.| +|++..
T Consensus 10 ~ies~E~F~~~l~~~l~E-lglt~~ 33 (170)
T COG4800 10 CIESGEDFGSCLQKLLDE-LGLTPS 33 (170)
T ss_pred HHhchhHHHHHHHHHHHH-cCCCHH
Confidence 467899999999998887 898754
No 130
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=24.10 E-value=2.7e+02 Score=19.79 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 66 TALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 66 aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
.+.+++.+++|+....++.+.+...|
T Consensus 51 ~~i~~~l~~~~~~~~did~Iavt~gP 76 (322)
T TIGR03722 51 KLIKEALEEAGVSLEDIDAVAFSQGP 76 (322)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 45889999999998888888776655
No 131
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.36 E-value=75 Score=18.11 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=12.3
Q ss_pred HHHHHHHHHhCCcee
Q psy11365 66 TALREVAEEAGVLGK 80 (95)
Q Consensus 66 aa~REl~EE~Gl~~~ 80 (95)
++..|.-||+|++..
T Consensus 58 ~LikeAv~ELgLDFs 72 (82)
T PF11212_consen 58 ALIKEAVEELGLDFS 72 (82)
T ss_pred HHHHHHHHHhCCcHH
Confidence 567899999999754
No 132
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.68 E-value=97 Score=18.00 Aligned_cols=23 Identities=26% Similarity=0.253 Sum_probs=15.5
Q ss_pred cCCCCCHHHHHHHHHHHHhCCceee
Q psy11365 57 VEPEEEPAATALREVAEEAGVLGKL 81 (95)
Q Consensus 57 ie~gE~~~~aa~REl~EE~Gl~~~~ 81 (95)
++..++.++ ..||+ |+.|.++..
T Consensus 56 l~~~~s~ee-v~~el-e~mga~in~ 78 (88)
T COG4009 56 LEEVESEEE-VEREL-EDMGAEINR 78 (88)
T ss_pred EeccCCHHH-HHHHH-HHhCchhcc
Confidence 445556555 56777 999988753
Done!