Query psy11365
Match_columns 95
No_of_seqs 191 out of 1370
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 16:31:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i7u_A AP4A hydrolase; nudix p 99.8 1.6E-20 5.3E-25 116.8 9.5 64 25-90 4-67 (134)
2 3id9_A MUTT/nudix family prote 99.8 5.6E-20 1.9E-24 117.3 10.9 73 22-94 20-92 (171)
3 2yyh_A MUTT domain, 8-OXO-DGTP 99.8 9.7E-20 3.3E-24 112.7 11.3 71 24-94 8-83 (139)
4 4dyw_A MUTT/nudix family prote 99.8 8.7E-20 3E-24 115.5 10.4 73 20-92 24-98 (157)
5 3gwy_A Putative CTP pyrophosph 99.8 6.1E-19 2.1E-23 109.3 10.8 67 26-92 7-78 (140)
6 3q93_A 7,8-dihydro-8-oxoguanin 99.8 4.1E-19 1.4E-23 114.6 10.1 70 21-90 21-92 (176)
7 2pbt_A AP4A hydrolase; nudix p 99.8 2.9E-19 1E-23 109.4 8.3 63 26-90 5-67 (134)
8 3shd_A Phosphatase NUDJ; nudix 99.8 7.3E-19 2.5E-23 110.2 9.9 67 25-91 5-72 (153)
9 3i9x_A MUTT/nudix family prote 99.8 4.9E-19 1.7E-23 114.9 9.3 59 36-94 46-113 (187)
10 3grn_A MUTT related protein; s 99.8 1.5E-18 5E-23 109.0 10.7 67 24-90 7-78 (153)
11 3gg6_A Nudix motif 18, nucleos 99.8 1.1E-18 3.8E-23 109.7 9.9 68 24-91 19-89 (156)
12 2fb1_A Conserved hypothetical 99.8 1.1E-18 3.7E-23 117.0 10.1 76 20-95 8-89 (226)
13 1sjy_A MUTT/nudix family prote 99.8 2.5E-18 8.6E-23 108.0 11.1 69 22-90 10-85 (159)
14 3cng_A Nudix hydrolase; struct 99.8 2.6E-18 8.7E-23 111.9 11.0 70 21-90 36-107 (189)
15 3f13_A Putative nudix hydrolas 99.8 1.1E-18 3.8E-23 111.8 9.0 67 23-91 14-80 (163)
16 2b0v_A Nudix hydrolase; struct 99.8 1.2E-18 4.1E-23 108.9 9.0 65 25-89 8-74 (153)
17 3f6a_A Hydrolase, nudix family 99.8 7.7E-19 2.6E-23 111.0 7.8 60 25-85 6-65 (159)
18 2fvv_A Diphosphoinositol polyp 99.8 2.7E-18 9.3E-23 112.7 10.6 58 35-92 53-110 (194)
19 3q1p_A Phosphohydrolase (MUTT/ 99.8 2.6E-18 8.8E-23 113.4 10.3 70 20-90 63-132 (205)
20 3exq_A Nudix family hydrolase; 99.8 1.3E-18 4.5E-23 110.5 8.5 73 20-92 5-81 (161)
21 3u53_A BIS(5'-nucleosyl)-tetra 99.8 1.9E-18 6.5E-23 109.0 9.1 54 35-88 23-76 (155)
22 3fk9_A Mutator MUTT protein; s 99.8 1.7E-18 5.8E-23 112.9 8.4 64 27-91 6-69 (188)
23 1vcd_A NDX1; nudix protein, di 99.8 4.4E-18 1.5E-22 103.3 9.2 63 27-91 4-67 (126)
24 3o8s_A Nudix hydrolase, ADP-ri 99.8 4.2E-18 1.4E-22 112.4 9.7 67 21-89 66-132 (206)
25 3eds_A MUTT/nudix family prote 99.8 2E-18 6.7E-23 108.7 7.7 67 21-89 17-84 (153)
26 3ees_A Probable pyrophosphohyd 99.8 6.1E-18 2.1E-22 105.4 9.7 66 25-90 22-90 (153)
27 1k2e_A Nudix homolog; nudix/MU 99.8 1.2E-18 4E-23 110.1 6.5 58 27-85 3-60 (156)
28 2pqv_A MUTT/nudix family prote 99.8 4.1E-18 1.4E-22 106.9 8.7 63 24-89 18-80 (154)
29 3oga_A Nucleoside triphosphata 99.7 1.5E-17 5.1E-22 105.5 10.4 62 25-86 28-93 (165)
30 3gz5_A MUTT/nudix family prote 99.7 1.1E-17 3.8E-22 113.0 10.3 72 24-95 21-100 (240)
31 1ktg_A Diadenosine tetraphosph 99.7 1.3E-17 4.5E-22 102.6 9.8 45 36-80 18-62 (138)
32 1vk6_A NADH pyrophosphatase; 1 99.7 7.8E-18 2.7E-22 115.7 9.6 76 15-90 130-206 (269)
33 2rrk_A ORF135, CTP pyrophospho 99.7 1.9E-17 6.4E-22 102.0 10.4 64 27-90 11-77 (140)
34 1rya_A GDP-mannose mannosyl hy 99.7 1.4E-17 4.8E-22 104.7 9.4 66 25-90 18-88 (160)
35 2b06_A MUTT/nudix family prote 99.7 6.7E-18 2.3E-22 105.9 7.8 70 21-91 4-79 (155)
36 2fkb_A Putative nudix hydrolas 99.7 5.7E-18 1.9E-22 108.8 7.6 69 22-90 34-108 (180)
37 1hzt_A Isopentenyl diphosphate 99.7 3.5E-18 1.2E-22 111.0 6.3 64 25-88 32-102 (190)
38 2azw_A MUTT/nudix family prote 99.7 2E-17 6.7E-22 102.7 9.2 62 26-89 19-82 (148)
39 1f3y_A Diadenosine 5',5'''-P1, 99.7 7.5E-18 2.6E-22 106.1 7.3 50 31-80 21-70 (165)
40 2kdv_A RNA pyrophosphohydrolas 99.7 3.1E-17 1.1E-21 104.7 10.1 63 25-88 8-71 (164)
41 3son_A Hypothetical nudix hydr 99.7 1.6E-17 5.5E-22 103.7 8.5 47 35-82 19-65 (149)
42 2o1c_A DATP pyrophosphohydrola 99.7 2.4E-17 8.3E-22 102.2 9.2 55 27-81 11-67 (150)
43 2w4e_A MUTT/nudix family prote 99.7 1.2E-17 4.1E-22 104.4 7.8 57 32-88 13-72 (145)
44 3h95_A Nucleoside diphosphate- 99.7 4.4E-17 1.5E-21 106.8 9.7 64 24-87 25-91 (199)
45 3r03_A Nudix hydrolase; struct 99.7 2.4E-17 8.3E-22 102.0 7.7 59 25-83 8-70 (144)
46 1v8y_A ADP-ribose pyrophosphat 99.7 4.3E-17 1.5E-21 104.1 8.9 63 27-90 36-101 (170)
47 1nqz_A COA pyrophosphatase (MU 99.7 3.6E-17 1.2E-21 106.4 8.6 64 27-90 37-106 (194)
48 3hhj_A Mutator MUTT protein; n 99.7 3.1E-17 1E-21 103.4 8.0 60 25-84 29-92 (158)
49 1vhz_A ADP compounds hydrolase 99.7 4.8E-17 1.6E-21 106.9 9.2 63 28-90 52-117 (198)
50 1mut_A MUTT, nucleoside tripho 99.7 3.9E-18 1.3E-22 103.6 3.4 61 29-89 9-72 (129)
51 2qjo_A Bifunctional NMN adenyl 99.7 7.2E-17 2.5E-21 112.4 9.7 63 21-83 199-263 (341)
52 2yvp_A NDX2, MUTT/nudix family 99.7 2.1E-17 7.1E-22 106.5 6.1 63 27-89 43-109 (182)
53 2qjt_B Nicotinamide-nucleotide 99.7 1.9E-16 6.6E-21 110.9 11.0 62 20-81 203-266 (352)
54 3e57_A Uncharacterized protein 99.7 3.1E-17 1E-21 109.4 6.3 68 24-91 67-147 (211)
55 1q27_A Putative nudix hydrolas 99.7 9.5E-17 3.3E-21 102.3 8.1 65 25-89 34-106 (171)
56 2fml_A MUTT/nudix family prote 99.7 2.7E-16 9.3E-21 107.9 10.9 74 22-95 36-119 (273)
57 3o6z_A GDP-mannose pyrophospha 99.7 2.3E-16 7.7E-21 103.0 9.0 55 35-90 57-120 (191)
58 1g0s_A Hypothetical 23.7 kDa p 99.7 2.5E-16 8.4E-21 104.3 9.1 55 35-89 69-131 (209)
59 3fcm_A Hydrolase, nudix family 99.7 2.6E-16 8.8E-21 102.9 8.8 56 22-78 42-99 (197)
60 2a6t_A SPAC19A8.12; alpha/beta 99.7 1.7E-16 6E-21 109.0 7.2 55 27-81 103-159 (271)
61 1x51_A A/G-specific adenine DN 99.7 2.2E-16 7.4E-21 99.3 6.8 52 35-86 33-89 (155)
62 1mk1_A ADPR pyrophosphatase; n 99.7 3.3E-16 1.1E-20 103.3 7.9 61 28-88 46-111 (207)
63 2jvb_A Protein PSU1, mRNA-deca 99.7 6.8E-17 2.3E-21 100.4 4.1 45 36-81 17-61 (146)
64 2dsc_A ADP-sugar pyrophosphata 99.6 1.4E-15 4.6E-20 100.6 8.1 64 25-88 63-132 (212)
65 3fjy_A Probable MUTT1 protein; 99.6 5.5E-15 1.9E-19 104.5 10.3 56 36-92 38-93 (364)
66 3q91_A Uridine diphosphate glu 99.6 3.1E-15 1.1E-19 100.0 7.9 43 47-89 94-139 (218)
67 1u20_A U8 snoRNA-binding prote 99.6 1.4E-15 4.9E-20 100.8 6.1 47 34-82 54-101 (212)
68 3fsp_A A/G-specific adenine gl 99.5 1.8E-14 6.3E-19 102.4 7.5 66 24-90 239-308 (369)
69 2dho_A Isopentenyl-diphosphate 99.5 9.3E-14 3.2E-18 93.6 8.1 66 24-89 58-143 (235)
70 2pny_A Isopentenyl-diphosphate 99.5 8.5E-14 2.9E-18 94.5 6.7 67 23-89 68-154 (246)
71 3bho_A Cleavage and polyadenyl 99.5 7.4E-13 2.5E-17 87.6 10.2 68 26-95 60-136 (208)
72 1q33_A Pyrophosphatase, ADP-ri 99.5 2.8E-13 9.7E-18 93.8 8.5 41 37-78 140-180 (292)
73 2xsq_A U8 snoRNA-decapping enz 99.4 1.4E-13 4.6E-18 91.9 5.5 42 37-80 66-108 (217)
74 3qsj_A Nudix hydrolase; struct 99.4 7.1E-13 2.4E-17 89.4 6.1 45 37-81 25-93 (232)
75 3dup_A MUTT/nudix family prote 99.3 3.9E-12 1.3E-16 88.6 8.6 44 37-80 134-182 (300)
76 3kvh_A Protein syndesmos; NUDT 99.3 9.9E-13 3.4E-17 86.6 3.9 52 37-90 45-98 (214)
77 3rh7_A Hypothetical oxidoreduc 99.3 1E-11 3.6E-16 87.1 7.3 64 24-93 182-246 (321)
78 1vig_A Vigilin; RNA-binding pr 37.4 19 0.00066 18.9 1.8 16 67-82 26-41 (71)
79 3hwu_A Putative DNA-binding pr 36.9 48 0.0017 20.0 3.8 33 56-89 18-50 (147)
80 2h6l_A Hypothetical protein; N 33.6 78 0.0027 18.9 4.7 33 56-89 15-47 (146)
81 3htn_A Putative DNA binding pr 32.8 83 0.0028 19.0 4.5 33 56-89 21-53 (149)
82 2drn_C 24-residues peptide fro 29.5 41 0.0014 14.4 1.9 11 61-71 1-11 (26)
83 2ctk_A Vigilin; K homology typ 29.1 30 0.001 19.7 1.8 16 67-82 38-53 (104)
84 2opv_A KHSRP protein; KH domai 28.9 34 0.0012 18.4 2.0 16 67-82 35-50 (85)
85 2dt4_A Hypothetical protein PH 27.4 1E+02 0.0035 18.3 4.5 33 56-89 15-47 (143)
86 1x4m_A FAR upstream element bi 26.8 40 0.0014 18.6 2.0 16 67-82 36-51 (94)
87 2axy_A Poly(RC)-binding protei 26.6 41 0.0014 17.6 2.0 16 67-82 26-41 (73)
88 4efo_A Serine/threonine-protei 25.3 72 0.0025 18.0 2.9 29 57-86 30-58 (94)
89 1wri_A Ferredoxin II, ferredox 24.3 68 0.0023 17.4 2.7 15 56-70 16-30 (93)
90 1zzk_A Heterogeneous nuclear r 24.2 49 0.0017 17.6 2.0 16 67-82 28-43 (82)
91 3t3l_A Frataxin, mitochondrial 23.9 85 0.0029 18.7 3.2 25 58-82 96-120 (129)
92 1zl8_A LIN-7; heterodimer, alp 23.9 38 0.0013 17.1 1.4 11 64-74 41-51 (53)
93 2p6y_A Hypothetical protein VC 23.8 1.2E+02 0.0042 18.0 4.2 33 56-89 8-41 (142)
94 1awd_A Ferredoxin; electron tr 23.6 80 0.0027 17.1 2.9 14 56-69 15-28 (94)
95 1j5k_A Heterogeneous nuclear r 23.2 48 0.0017 18.0 1.9 17 67-83 35-51 (89)
96 2ctm_A Vigilin; K homology typ 23.2 47 0.0016 18.5 1.9 16 67-82 38-53 (95)
97 2ctj_A Vigilin; K homology typ 23.2 46 0.0016 18.6 1.8 16 67-82 38-54 (95)
98 1frr_A Ferredoxin I; electron 22.7 78 0.0027 17.0 2.8 18 57-79 17-34 (95)
99 2dgr_A Ring finger and KH doma 22.4 49 0.0017 18.0 1.8 15 68-82 32-46 (83)
100 2p2r_A Poly(RC)-binding protei 22.2 57 0.0019 17.0 2.0 17 67-83 26-42 (76)
101 1we8_A Tudor and KH domain con 22.0 55 0.0019 18.4 2.0 16 67-82 36-51 (104)
102 1wvn_A Poly(RC)-binding protei 21.9 58 0.002 17.3 2.0 17 67-83 27-43 (82)
103 2ctl_A Vigilin; K homology typ 20.9 55 0.0019 18.2 1.9 16 67-82 38-53 (97)
104 2hh3_A KH-type splicing regula 20.7 58 0.002 18.5 2.0 16 67-82 32-47 (106)
105 2hh2_A KH-type splicing regula 20.7 54 0.0018 18.6 1.8 16 67-82 28-43 (107)
106 1dtj_A RNA-binding neurooncolo 20.5 65 0.0022 16.7 2.0 16 67-82 24-39 (76)
107 2cte_A Vigilin; K homology typ 20.3 52 0.0018 18.1 1.7 16 67-82 38-53 (94)
No 1
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.84 E-value=1.6e-20 Score=116.82 Aligned_cols=64 Identities=31% Similarity=0.521 Sum_probs=55.2
Q ss_pred eEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 25 ALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 25 ~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
.+++.++++++++|||+||. .|.|.||||++++|||+.+||.||++||||+.+...++++.+.+
T Consensus 4 ~~aag~vv~~~~~vLL~~r~--~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~ 67 (134)
T 3i7u_A 4 EFSAGGVLFKDGEVLLIKTP--SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHY 67 (134)
T ss_dssp EEEEEEEEEETTEEEEEECT--TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEeC--CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeE
Confidence 34566777889999999874 47999999999999999999999999999999988888776543
No 2
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.83 E-value=5.6e-20 Score=117.35 Aligned_cols=73 Identities=27% Similarity=0.383 Sum_probs=62.1
Q ss_pred CceeEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCCCC
Q psy11365 22 PTMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKV 94 (95)
Q Consensus 22 ~~~~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~ 94 (95)
....+.+.+++.+++++||++|...+|.|.||||++++|||+.+||+||++||||+.+...++++.+.++..+
T Consensus 20 ~~~~~~v~~ii~~~~~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 92 (171)
T 3id9_A 20 NIMQVRVTGILIEDEKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDAS 92 (171)
T ss_dssp --CEEEEEEEEEETTEEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSS
T ss_pred CceEEEEEEEEEECCEEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccCCC
Confidence 3455666777778899999999776799999999999999999999999999999999888888888776543
No 3
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.83 E-value=9.7e-20 Score=112.70 Aligned_cols=71 Identities=27% Similarity=0.361 Sum_probs=58.8
Q ss_pred eeEEEEEEEEc---CCE--EEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCCCC
Q psy11365 24 MALFITTACVM---STL--ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKV 94 (95)
Q Consensus 24 ~~~~~~~~~~~---~~~--vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~ 94 (95)
..+.+.+++.. +++ +||++|...++.|.||||++++|||+.+||+||++||||+.+....+++.+..+.++
T Consensus 8 p~~~v~~vi~~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~ 83 (139)
T 2yyh_A 8 PLLATDVIIRLWDGENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPERD 83 (139)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSC
T ss_pred CeEEEEEEEEEEcCCCcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCCCcC
Confidence 34444555554 677 999999776667999999999999999999999999999999988899988876543
No 4
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.82 E-value=8.7e-20 Score=115.53 Aligned_cols=73 Identities=26% Similarity=0.282 Sum_probs=60.8
Q ss_pred cCCceeEEEEEEEEcCCEEEEEEEeC--CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365 20 RCPTMALFITTACVMSTLILLVTSSR--RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92 (95)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vll~~r~~--~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 92 (95)
......+.+.+++.++++|||++|.+ .+|.|.||||++++|||+.+||+||++||||+.+...++++.+....
T Consensus 24 ~~~~~~~~v~~vi~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 98 (157)
T 4dyw_A 24 HTEQPRVGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHID 98 (157)
T ss_dssp --CCCEEEEEEEEEETTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEE
T ss_pred CCCCceeEEEEEEEECCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeec
Confidence 33445667777777789999999976 35899999999999999999999999999999998888888776543
No 5
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.80 E-value=6.1e-19 Score=109.30 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=54.8
Q ss_pred EEEEEEEEcCCEEEEEEEeC-----CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365 26 LFITTACVMSTLILLVTSSR-----RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92 (95)
Q Consensus 26 ~~~~~~~~~~~~vll~~r~~-----~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 92 (95)
.++++++.+++++||+||.. .+|.|.||||++++|||+.+||.||++||||+.+...++++.+.+..
T Consensus 7 ~~v~~vi~~~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 78 (140)
T 3gwy_A 7 EVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTY 78 (140)
T ss_dssp EEEEEEEEETTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCC
T ss_pred EEEEEEEEeCCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEe
Confidence 34455566789999999875 45799999999999999999999999999999999888888876543
No 6
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.80 E-value=4.1e-19 Score=114.65 Aligned_cols=70 Identities=23% Similarity=0.268 Sum_probs=58.8
Q ss_pred CCceeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 21 CPTMALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
.+...+++.+++.+++++||++|.+. +|.|.||||++++|||+.+||.||++||||+.+....+++.+.+
T Consensus 21 m~~~~~~~~~vi~~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~ 92 (176)
T 3q93_A 21 MGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVF 92 (176)
T ss_dssp --CEEEEEEEEEECSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEE
T ss_pred CCCCcEEEEEEEEeCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEE
Confidence 34456666667777899999998653 58999999999999999999999999999999988888888754
No 7
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.79 E-value=2.9e-19 Score=109.41 Aligned_cols=63 Identities=32% Similarity=0.526 Sum_probs=54.5
Q ss_pred EEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 26 LFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 26 ~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
..+.+++.+++++||++|.. |.|.||||++++|||+.+||.||++||||+.+....+++.+.+
T Consensus 5 ~~~~~vi~~~~~vLl~~r~~--~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~ 67 (134)
T 2pbt_A 5 FSAGGVLFKDGEVLLIKTPS--NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHY 67 (134)
T ss_dssp EEEEEEEEETTEEEEEECTT--SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEE
T ss_pred eEEEEEEEECCEEEEEEeCC--CcEECCccccCCCCCHHHHHHHHHHHHHCCccEEeeeeeEEEE
Confidence 45556666788999999855 8999999999999999999999999999999988888877543
No 8
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.79 E-value=7.3e-19 Score=110.16 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=57.3
Q ss_pred eEEEEEEEEcCCEEEEEEEeC-CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 25 ALFITTACVMSTLILLVTSSR-RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 25 ~~~~~~~~~~~~~vll~~r~~-~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
.+.+.+++.+++++||++|.. .++.|.||||++++|||+.+||+||++||||+.+...++++.+.+.
T Consensus 5 ~~~v~~ii~~~~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~ 72 (153)
T 3shd_A 5 HVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWI 72 (153)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
T ss_pred ceEEEEEEEeCCEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEe
Confidence 455666677789999999863 3478999999999999999999999999999999888888877544
No 9
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.79 E-value=4.9e-19 Score=114.94 Aligned_cols=59 Identities=32% Similarity=0.449 Sum_probs=52.9
Q ss_pred CEEEEEEEe---------CCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCCCC
Q psy11365 36 TLILLVTSS---------RRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKV 94 (95)
Q Consensus 36 ~~vll~~r~---------~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~ 94 (95)
++|||++|. ..+|.|.||||++++|||+.+||+||++||||+.+...++++++..+.++
T Consensus 46 ~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~ 113 (187)
T 3i9x_A 46 LHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVFDKPGRD 113 (187)
T ss_dssp EEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSS
T ss_pred CEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEcCCccC
Confidence 489999993 35689999999999999999999999999999999999999998877654
No 10
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.79 E-value=1.5e-18 Score=108.99 Aligned_cols=67 Identities=27% Similarity=0.377 Sum_probs=56.5
Q ss_pred eeEEEEEEEEc-CCEEEEEEEeCC----CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 24 MALFITTACVM-STLILLVTSSRR----PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 24 ~~~~~~~~~~~-~~~vll~~r~~~----~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
....+.+++.+ ++++||++|... +|.|.||||++++|||+.+||.||++||||+.+...++++.+..
T Consensus 7 ~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 78 (153)
T 3grn_A 7 YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNF 78 (153)
T ss_dssp EEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEE
T ss_pred eEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEE
Confidence 45555556665 789999999763 48999999999999999999999999999999988888887654
No 11
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=109.72 Aligned_cols=68 Identities=28% Similarity=0.431 Sum_probs=56.5
Q ss_pred eeEEEEEEEE-cCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 24 MALFITTACV-MSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 24 ~~~~~~~~~~-~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
...++.+++. .++++||++|.+. +|.|.||||+++.|||+.+||+||++||||+.+...++++.+...
T Consensus 19 ~~~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~ 89 (156)
T 3gg6_A 19 VCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG 89 (156)
T ss_dssp CEEEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS
T ss_pred eEEEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC
Confidence 3344444444 4789999998764 589999999999999999999999999999999988988887653
No 12
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.78 E-value=1.1e-18 Score=117.00 Aligned_cols=76 Identities=25% Similarity=0.306 Sum_probs=62.4
Q ss_pred cCCceeEEEEEEEE---c-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCCC
Q psy11365 20 RCPTMALFITTACV---M-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPK 93 (95)
Q Consensus 20 ~~~~~~~~~~~~~~---~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~ 93 (95)
.++...+.+.++++ + +++|||++|... +|.|.||||++++|||+.+||.||++||||+.+.....++++..+.+
T Consensus 8 ~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~~r 87 (226)
T 2fb1_A 8 SNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAIDR 87 (226)
T ss_dssp TSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTTS
T ss_pred cCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCCCc
Confidence 34445556666665 2 469999998753 47999999999999999999999999999999998899999987776
Q ss_pred CC
Q psy11365 94 VP 95 (95)
Q Consensus 94 ~p 95 (95)
+|
T Consensus 88 ~~ 89 (226)
T 2fb1_A 88 DP 89 (226)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 13
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.78 E-value=2.5e-18 Score=108.03 Aligned_cols=69 Identities=29% Similarity=0.408 Sum_probs=57.6
Q ss_pred CceeEEEEEEEEc-CCEEEEEEEeC------CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 22 PTMALFITTACVM-STLILLVTSSR------RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 22 ~~~~~~~~~~~~~-~~~vll~~r~~------~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
+.....+.+++.+ ++++||++|.+ .+|.|.||||++++|||+.+||.||++||||+.+...++++.+..
T Consensus 10 ~~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~ 85 (159)
T 1sjy_A 10 PVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLG 85 (159)
T ss_dssp CCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEE
T ss_pred CeEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEec
Confidence 3444555556665 68999999975 458999999999999999999999999999999988888887764
No 14
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.78 E-value=2.6e-18 Score=111.89 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=58.2
Q ss_pred CCceeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 21 CPTMALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
+....+.+.+++.++++|||++|... +|.|.||||++++|||+.+||+||++||||+.+...++++.+..
T Consensus 36 ~~~~~~~v~~ii~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~ 107 (189)
T 3cng_A 36 YQNPKVIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSL 107 (189)
T ss_dssp CCCCEEEEEEEEEETTEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEE
T ss_pred CCCCceEEEEEEEeCCEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEEec
Confidence 33445566667777899999999763 57999999999999999999999999999999887777776554
No 15
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.78 E-value=1.1e-18 Score=111.75 Aligned_cols=67 Identities=22% Similarity=0.186 Sum_probs=54.8
Q ss_pred ceeEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 23 TMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 23 ~~~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
....++++++.+++++||++|+ +|.|.||||++++|||+.+||.||++||||+.+....+++.+.++
T Consensus 14 ~~~~~~~~ii~~~~~vLL~~r~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~ 80 (163)
T 3f13_A 14 DLARRATAIIEMPDGVLVTASR--GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITP 80 (163)
T ss_dssp SCEEEEEEECEETTEEEEEECC-----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECS
T ss_pred CceEEEEEEEEeCCEEEEEEEC--CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecC
Confidence 3455566666678899999874 589999999999999999999999999999999888888877654
No 16
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.78 E-value=1.2e-18 Score=108.90 Aligned_cols=65 Identities=25% Similarity=0.253 Sum_probs=55.5
Q ss_pred eEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 25 ALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 25 ~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
.+.+.+++.+++++||++|.+. ++.|.||||++++|||+.+||+||++||||+.+...++++.+.
T Consensus 8 ~~~v~~ii~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~ 74 (153)
T 2b0v_A 8 NVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYH 74 (153)
T ss_dssp EEEEEEECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEE
T ss_pred CEEEEEEEeeCCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEE
Confidence 3455556667899999998654 4689999999999999999999999999999998888888764
No 17
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.77 E-value=7.7e-19 Score=111.00 Aligned_cols=60 Identities=25% Similarity=0.357 Sum_probs=51.6
Q ss_pred eEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeE
Q psy11365 25 ALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSL 85 (95)
Q Consensus 25 ~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~ 85 (95)
..++.+++.+++++||++|+. +|.|.||||++++|||+.+||+||++||||+.+.....+
T Consensus 6 ~~~v~~vi~~~~~vLL~~r~~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~ 65 (159)
T 3f6a_A 6 HFTVSVFIVCKDKVLLHLHKK-AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPI 65 (159)
T ss_dssp CEEEEEEEEETTEEEEEECSS-SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCC
T ss_pred eEEEEEEEEECCEEEEEEcCC-CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccc
Confidence 445666667789999999854 689999999999999999999999999999998766555
No 18
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.77 E-value=2.7e-18 Score=112.70 Aligned_cols=58 Identities=62% Similarity=1.094 Sum_probs=52.7
Q ss_pred CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365 35 STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92 (95)
Q Consensus 35 ~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 92 (95)
++++||++|.+.+|.|.||||++++|||+++||+||++||||+.+...++++.+.+..
T Consensus 53 ~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~ 110 (194)
T 2fvv_A 53 EEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE 110 (194)
T ss_dssp CCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT
T ss_pred CCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCC
Confidence 5799999987777999999999999999999999999999999999888888887543
No 19
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.77 E-value=2.6e-18 Score=113.36 Aligned_cols=70 Identities=24% Similarity=0.345 Sum_probs=58.9
Q ss_pred cCCceeEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 20 RCPTMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
.++...+.+.+++.+++++||++|. .+|.|.||||++++|||+.+||.||++||||+.+...++++++..
T Consensus 63 ~~~~~~~~v~~vv~~~~~vLLv~r~-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~ 132 (205)
T 3q1p_A 63 GYQTPKVDIRAVVFQNEKLLFVKEK-SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDK 132 (205)
T ss_dssp SSCCCEEEEEEEEEETTEEEEEEC----CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEH
T ss_pred CCCCCcceEEEEEEECCEEEEEEEc-CCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEec
Confidence 3455566777777788999999985 468999999999999999999999999999999998888888764
No 20
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.77 E-value=1.3e-18 Score=110.45 Aligned_cols=73 Identities=26% Similarity=0.209 Sum_probs=59.7
Q ss_pred cCCceeEEEEEEEEcCC--EEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365 20 RCPTMALFITTACVMST--LILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92 (95)
Q Consensus 20 ~~~~~~~~~~~~~~~~~--~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 92 (95)
+.....+++.+++.+++ ++||++|... .|.|.||||++++|||+.+||.||++||||+.+...++++.+....
T Consensus 5 r~~~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 81 (161)
T 3exq_A 5 RTQPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFD 81 (161)
T ss_dssp SCCCEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEEC
T ss_pred ccCCceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEeccc
Confidence 33445666666776655 9999998753 3689999999999999999999999999999999888888877554
No 21
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.77 E-value=1.9e-18 Score=109.01 Aligned_cols=54 Identities=39% Similarity=0.535 Sum_probs=47.3
Q ss_pred CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365 35 STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88 (95)
Q Consensus 35 ~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~ 88 (95)
+.++||+||+..++.|.||||++++|||+.+||.||++||||+.+.....++.+
T Consensus 23 ~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~ 76 (155)
T 3u53_A 23 AIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGF 76 (155)
T ss_dssp SEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred CcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeE
Confidence 348999999877789999999999999999999999999999988766665543
No 22
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.77 E-value=1.7e-18 Score=112.90 Aligned_cols=64 Identities=30% Similarity=0.433 Sum_probs=54.7
Q ss_pred EEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 27 FITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 27 ~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
++.+++.++++|||++|. .+|.|.||||++++|||+.+||.||++||||+.+...++++.+...
T Consensus 6 v~~~vi~~~~~vLL~~r~-~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~ 69 (188)
T 3fk9_A 6 VTNCIVVDHDQVLLLQKP-RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMV 69 (188)
T ss_dssp EEEEEEEETTEEEEEECT-TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEeC-CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEE
Confidence 445556678999999984 5789999999999999999999999999999999887777776543
No 23
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.76 E-value=4.4e-18 Score=103.28 Aligned_cols=63 Identities=27% Similarity=0.296 Sum_probs=53.4
Q ss_pred EEEEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 27 FITTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 27 ~~~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
.+.+++.+ ++++||+||.. |.|.||||++++|||+.+||.||++||||+.+...++++.+.+.
T Consensus 4 ~~~~vi~~~~~~vLl~~r~~--g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~ 67 (126)
T 1vcd_A 4 GAGGVVFNAKREVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYV 67 (126)
T ss_dssp EEEEEEECTTSCEEEEECTT--SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEE
T ss_pred EEEEEEEcCCCEEEEEEECC--CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEe
Confidence 44555555 67899999854 89999999999999999999999999999999888888877543
No 24
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.76 E-value=4.2e-18 Score=112.42 Aligned_cols=67 Identities=27% Similarity=0.395 Sum_probs=58.4
Q ss_pred CCceeEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 21 CPTMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
++...+.+.+++++++++||++|. +|.|.||||++++|||+.+||.||++||||+.+....++++++
T Consensus 66 y~~~~~~v~~vv~~~~~vLLvrr~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~ 132 (206)
T 3o8s_A 66 YQTPKLDTRAAIFQEDKILLVQEN--DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILD 132 (206)
T ss_dssp --CCEEEEEEEEEETTEEEEEECT--TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred CCCCCccEEEEEEECCEEEEEEec--CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEe
Confidence 445566777777788999999986 7899999999999999999999999999999999888888876
No 25
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.76 E-value=2e-18 Score=108.74 Aligned_cols=67 Identities=27% Similarity=0.387 Sum_probs=53.9
Q ss_pred CCceeEEEEEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 21 CPTMALFITTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 21 ~~~~~~~~~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
.+.....+.+++.+ ++++||++|. +|.|.||||++++|||+.+||+||++||||+.+...++++++.
T Consensus 17 ~~~~~~~v~~ii~~~~~~vLL~~r~--~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~ 84 (153)
T 3eds_A 17 ELIFXPSVAAVIKNEQGEILFQYPG--GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFG 84 (153)
T ss_dssp SCEEEEEEEEEEBCTTCCEEEECC-----CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEC
T ss_pred CcEEeeeEEEEEEcCCCeEEEEEcC--CCcEECCccccCCCCCHHHHHHHHHHHHHCccceeeeEEEEec
Confidence 34455556666665 6799998876 7899999999999999999999999999999999888888763
No 26
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.76 E-value=6.1e-18 Score=105.40 Aligned_cols=66 Identities=23% Similarity=0.331 Sum_probs=55.0
Q ss_pred eEEEEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 25 ALFITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 25 ~~~~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
..++++++..++++||++|... +|.|.||||++++|||+.+||.||++||||+.+....+++.+.+
T Consensus 22 ~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~ 90 (153)
T 3ees_A 22 IPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTH 90 (153)
T ss_dssp EEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEE
Confidence 3445555566899999998754 48999999999999999999999999999999888777776543
No 27
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.76 E-value=1.2e-18 Score=110.08 Aligned_cols=58 Identities=31% Similarity=0.389 Sum_probs=49.6
Q ss_pred EEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeE
Q psy11365 27 FITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSL 85 (95)
Q Consensus 27 ~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~ 85 (95)
++.+++.+++++||++|.. +|.|.||||++++|||+.+||.||++||||+.+.....+
T Consensus 3 ~~~~vi~~~~~vLL~~r~~-~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~ 60 (156)
T 1k2e_A 3 VTSGVLVENGKVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFT 60 (156)
T ss_dssp EEEEECEETTEEEEEECTT-TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCC
T ss_pred EEEEEEEECCEEEEEEEcC-CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccce
Confidence 4455666789999998854 689999999999999999999999999999998766553
No 28
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.76 E-value=4.1e-18 Score=106.94 Aligned_cols=63 Identities=25% Similarity=0.357 Sum_probs=54.3
Q ss_pred eeEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 24 MALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 24 ~~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
....+.+++.+++++||++| +|.|.||||++++|||+.+||.||++||||+.+...++++.+.
T Consensus 18 ~~~~~~~ii~~~~~vLl~~r---~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~ 80 (154)
T 2pqv_A 18 FGVRATALIVQNHKLLVTKD---KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVE 80 (154)
T ss_dssp EEEEEEECCEETTEEEEEEE---TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_pred EeEEEEEEEEECCEEEEEec---CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEe
Confidence 44566666678899999998 6899999999999999999999999999999988777776654
No 29
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.75 E-value=1.5e-17 Score=105.49 Aligned_cols=62 Identities=27% Similarity=0.374 Sum_probs=50.0
Q ss_pred eEEEEEEEEcCCEEEEEEEeCC----CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEE
Q psy11365 25 ALFITTACVMSTLILLVTSSRR----PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLG 86 (95)
Q Consensus 25 ~~~~~~~~~~~~~vll~~r~~~----~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~ 86 (95)
..++++++.+++++||++|... +|.|.||||++++|||+.+||.||++||||+.+...+++.
T Consensus 28 ~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~ 93 (165)
T 3oga_A 28 RTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITP 93 (165)
T ss_dssp EEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred EEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceee
Confidence 3344445556889999998743 4899999999999999999999999999999987665543
No 30
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.75 E-value=1.1e-17 Score=113.00 Aligned_cols=72 Identities=24% Similarity=0.317 Sum_probs=59.9
Q ss_pred eeEEEEEEEE--cC--CEEEEEEEeCC--CCCEEeceeecCC--CCCHHHHHHHHHHHHhCCceeeceeEEEEecCCCCC
Q psy11365 24 MALFITTACV--MS--TLILLVTSSRR--PEHWIVPGGGVEP--EEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95 (95)
Q Consensus 24 ~~~~~~~~~~--~~--~~vll~~r~~~--~g~w~~PgG~ie~--gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~p 95 (95)
..+.+.++++ ++ ++|||++|... +|.|.||||++++ |||+.+||.||++||||+.+.....++++..+.++|
T Consensus 21 p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~r~~ 100 (240)
T 3gz5_A 21 QLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSRDA 100 (240)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEEESSSST
T ss_pred CccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeCCCccCC
Confidence 3444444444 34 48999998753 4899999999999 999999999999999999999999999999887765
No 31
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.75 E-value=1.3e-17 Score=102.56 Aligned_cols=45 Identities=38% Similarity=0.637 Sum_probs=40.8
Q ss_pred CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365 36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~ 80 (95)
+++||+||+..+|.|.||||++++|||+.+||.||++||||+.+.
T Consensus 18 ~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~ 62 (138)
T 1ktg_A 18 IEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKE 62 (138)
T ss_dssp EEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGG
T ss_pred cEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCcc
Confidence 589999987666799999999999999999999999999999543
No 32
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=99.75 E-value=7.8e-18 Score=115.73 Aligned_cols=76 Identities=29% Similarity=0.184 Sum_probs=62.8
Q ss_pred ccccccCCceeEEEEEEEEcCCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 15 VDSVRRCPTMALFITTACVMSTLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
.+....++.....+.+++.+++++||+||... +|.|.||||++++|||+++||.||++||||+.+...++++.+..
T Consensus 130 ~C~~~~yp~~~~~viv~v~~~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~ 206 (269)
T 1vk6_A 130 HCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPW 206 (269)
T ss_dssp SSSCEECCCCEEEEEEEEEETTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEE
T ss_pred CCCCEecCCCCcEEEEEEEeCCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEec
Confidence 34444556555666667777899999999764 48999999999999999999999999999999998888887654
No 33
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.75 E-value=1.9e-17 Score=101.96 Aligned_cols=64 Identities=25% Similarity=0.434 Sum_probs=53.5
Q ss_pred EEEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 27 FITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 27 ~~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
++++++.+++++||++|... +|.|.||||+++.|||+.+||.||++||||+.+....+++.+.+
T Consensus 11 ~~~~ii~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~ 77 (140)
T 2rrk_A 11 VVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQR 77 (140)
T ss_dssp EEEEEEEETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEE
T ss_pred EEEEEEEcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEE
Confidence 33444567889999998653 58999999999999999999999999999999887777776643
No 34
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.74 E-value=1.4e-17 Score=104.69 Aligned_cols=66 Identities=26% Similarity=0.331 Sum_probs=53.5
Q ss_pred eEEEEEEEEc-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee--eceeEEEEec
Q psy11365 25 ALFITTACVM-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK--LGRSLGVFEV 90 (95)
Q Consensus 25 ~~~~~~~~~~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~--~~~~~~~~~~ 90 (95)
...+.+++.+ ++++||++|... +|.|.||||++++|||+.+||.||++||||+.+. ...+++.+.+
T Consensus 18 ~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 88 (160)
T 1rya_A 18 LVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQH 88 (160)
T ss_dssp EEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeE
Confidence 3455556665 789999998763 5899999999999999999999999999999853 5666666643
No 35
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.74 E-value=6.7e-18 Score=105.92 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=54.5
Q ss_pred CCceeEEEEEEEEcCCE----EEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365 21 CPTMALFITTACVMSTL----ILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91 (95)
Q Consensus 21 ~~~~~~~~~~~~~~~~~----vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~ 91 (95)
.......+.+++.++++ +||++|... +| |.||||++++|||+.+||.||++||||+.+...++++.+...
T Consensus 4 ~~~~~~~~~~ii~~~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~ 79 (155)
T 2b06_A 4 SQLTILTNICLIEDLETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWP 79 (155)
T ss_dssp GGCEEEEEEEEEEETTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEE
T ss_pred CcCcEEEEEEEEEECCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeec
Confidence 33455666667777776 888888653 35 899999999999999999999999999999888888876654
No 36
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.74 E-value=5.7e-18 Score=108.76 Aligned_cols=69 Identities=23% Similarity=0.176 Sum_probs=54.7
Q ss_pred CceeEEEEEEEEc-CCEEEEEEEeCC----CCCEEe-ceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 22 PTMALFITTACVM-STLILLVTSSRR----PEHWIV-PGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 22 ~~~~~~~~~~~~~-~~~vll~~r~~~----~g~w~~-PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
......+.+++.+ ++++||++|... +|.|.| |||++++|||+.+||+||++||||+.+.....++.+.+
T Consensus 34 ~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~ 108 (180)
T 2fkb_A 34 CLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYF 108 (180)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEE
T ss_pred CceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEe
Confidence 3444455555554 679999988653 578999 99999999999999999999999998777777766543
No 37
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.74 E-value=3.5e-18 Score=111.02 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=51.6
Q ss_pred eEEEEEEEEc-CCEEEEEEEeCC----CCCEEe-ceeecCCCCCHHHHHHHHHHHHhCCceeec-eeEEEE
Q psy11365 25 ALFITTACVM-STLILLVTSSRR----PEHWIV-PGGGVEPEEEPAATALREVAEEAGVLGKLG-RSLGVF 88 (95)
Q Consensus 25 ~~~~~~~~~~-~~~vll~~r~~~----~g~w~~-PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~-~~~~~~ 88 (95)
...+.+++.+ ++++||++|... +|.|.| |||++++|||+.+||+||++||||+.+... .+++.+
T Consensus 32 ~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~ 102 (190)
T 1hzt_A 32 HLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDF 102 (190)
T ss_dssp EECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTC
T ss_pred EEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeE
Confidence 3455555554 689999998642 689999 999999999999999999999999998766 555443
No 38
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.73 E-value=2e-17 Score=102.71 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=51.3
Q ss_pred EEEEEEEEc--CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 26 LFITTACVM--STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 26 ~~~~~~~~~--~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
..+.+++.+ ++++||++| .+|.|.||||++++|||+.+||.||++||||+.+.....++.+.
T Consensus 19 ~~~~~vi~~~~~~~vLl~~r--~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~ 82 (148)
T 2azw_A 19 YAAYIIVSKPENNTMVLVQA--PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEAD 82 (148)
T ss_dssp CEEEEECEEGGGTEEEEEEC--TTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEE
T ss_pred eEEEEEEECCCCCeEEEEEc--CCCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEE
Confidence 344444444 489999997 34899999999999999999999999999999998877777653
No 39
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.73 E-value=7.5e-18 Score=106.13 Aligned_cols=50 Identities=30% Similarity=0.573 Sum_probs=44.4
Q ss_pred EEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365 31 ACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 31 ~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~ 80 (95)
++..++++||++|...+|.|.||||++++|||+.+||+||++||||+.+.
T Consensus 21 i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~ 70 (165)
T 1f3y_A 21 LMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSA 70 (165)
T ss_dssp EECTTSCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSE
T ss_pred EECCCCcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChh
Confidence 33347899999997667899999999999999999999999999999864
No 40
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.73 E-value=3.1e-17 Score=104.73 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=52.9
Q ss_pred eEEEEEEEE-cCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365 25 ALFITTACV-MSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88 (95)
Q Consensus 25 ~~~~~~~~~-~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~ 88 (95)
...+.++++ .++++||++|.. ++.|.||||++++|||+.+||.||++||||+.+...++++.+
T Consensus 8 ~~~v~~~i~~~~~~vLl~~r~~-~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~ 71 (164)
T 2kdv_A 8 RPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILAST 71 (164)
T ss_dssp EEEEEEEEECTTSEEEEEEETT-CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CcEEEEEEEccCCEEEEEEEcC-CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEe
Confidence 344555555 478999998854 789999999999999999999999999999998877777775
No 41
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.73 E-value=1.6e-17 Score=103.69 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=42.2
Q ss_pred CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec
Q psy11365 35 STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG 82 (95)
Q Consensus 35 ~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~ 82 (95)
++++||++|.. +|.|.||||++++|||+.+||.||++||||+.+...
T Consensus 19 ~~~vLl~~r~~-~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~ 65 (149)
T 3son_A 19 NYQFGVLHRTD-ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVK 65 (149)
T ss_dssp SEEEEEEEESS-SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCC
T ss_pred CeEEEEEEEcC-CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccc
Confidence 46899999865 489999999999999999999999999999987753
No 42
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.73 E-value=2.4e-17 Score=102.21 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=46.8
Q ss_pred EEEEEEEc--CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365 27 FITTACVM--STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL 81 (95)
Q Consensus 27 ~~~~~~~~--~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~ 81 (95)
.+.+++++ ++++||++|...+|.|.||||++++|||+.+||.||++||||+.+..
T Consensus 11 ~v~~~i~~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~ 67 (150)
T 2o1c_A 11 SILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVA 67 (150)
T ss_dssp EEEEEEEETTTCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHH
T ss_pred EEEEEEEeCCCCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccc
Confidence 34444444 48999999876678999999999999999999999999999998765
No 43
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.73 E-value=1.2e-17 Score=104.39 Aligned_cols=57 Identities=30% Similarity=0.287 Sum_probs=46.4
Q ss_pred EEcCCEEEEEEEeCCC---CCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365 32 CVMSTLILLVTSSRRP---EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88 (95)
Q Consensus 32 ~~~~~~vll~~r~~~~---g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~ 88 (95)
+..++++||+++.+.+ +.|.||||++++|||+.+||.||++||||+.+.....++.+
T Consensus 13 ~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~ 72 (145)
T 2w4e_A 13 VTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGF 72 (145)
T ss_dssp EETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCB
T ss_pred EcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecC
Confidence 3457899888765432 48999999999999999999999999999988766665543
No 44
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.72 E-value=4.4e-17 Score=106.77 Aligned_cols=64 Identities=33% Similarity=0.514 Sum_probs=51.5
Q ss_pred eeEEEEEEEEc--CCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEE
Q psy11365 24 MALFITTACVM--STLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV 87 (95)
Q Consensus 24 ~~~~~~~~~~~--~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~ 87 (95)
..+.+.++++. ++++||+||+.. +|.|.||||++++|||+.+||+||++||||+.+...++++.
T Consensus 25 ~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~ 91 (199)
T 3h95_A 25 HQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSI 91 (199)
T ss_dssp -CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_pred ccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEE
Confidence 33444444444 479999998542 58999999999999999999999999999999987777775
No 45
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.71 E-value=2.4e-17 Score=101.99 Aligned_cols=59 Identities=34% Similarity=0.510 Sum_probs=48.4
Q ss_pred eEEEEEEEEc-CCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeece
Q psy11365 25 ALFITTACVM-STLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGR 83 (95)
Q Consensus 25 ~~~~~~~~~~-~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~ 83 (95)
..++.+++.+ ++++||++|... +|.|.||||+++.||++.+||.||++||||+.+...+
T Consensus 8 ~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~ 70 (144)
T 3r03_A 8 LLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASC 70 (144)
T ss_dssp EEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGG
T ss_pred eEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccc
Confidence 3344444444 789999998753 4899999999999999999999999999999887653
No 46
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.71 E-value=4.3e-17 Score=104.13 Aligned_cols=63 Identities=27% Similarity=0.339 Sum_probs=52.2
Q ss_pred EEEEEEEcCCEEEEEEEeC---CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 27 FITTACVMSTLILLVTSSR---RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 27 ~~~~~~~~~~~vll~~r~~---~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
.+.+++.+++++||+++.+ .++.|.||||++++|||+.+||.||++||||+ +.....++.+..
T Consensus 36 ~v~vii~~~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~ 101 (170)
T 1v8y_A 36 AVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFV 101 (170)
T ss_dssp EEEEEEEETTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEES
T ss_pred eEEEEEEECCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEec
Confidence 3444444588999998755 34799999999999999999999999999999 888888877653
No 47
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.71 E-value=3.6e-17 Score=106.44 Aligned_cols=64 Identities=27% Similarity=0.352 Sum_probs=51.8
Q ss_pred EEEEEEEcCC--EEEEEEEeC----CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 27 FITTACVMST--LILLVTSSR----RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 27 ~~~~~~~~~~--~vll~~r~~----~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
++.+++..++ ++||++|.. .+|.|.||||++++|||+.+||+||++||||+.+...++++.+.+
T Consensus 37 ~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~ 106 (194)
T 1nqz_A 37 AVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDD 106 (194)
T ss_dssp EEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCC
T ss_pred EEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccC
Confidence 3333444566 899999864 368999999999999999999999999999999888887776653
No 48
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.71 E-value=3.1e-17 Score=103.41 Aligned_cols=60 Identities=30% Similarity=0.485 Sum_probs=48.8
Q ss_pred eEEEEEEEE-cCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeecee
Q psy11365 25 ALFITTACV-MSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRS 84 (95)
Q Consensus 25 ~~~~~~~~~-~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~ 84 (95)
...+.+++. .++++||++|... +|.|.||||++++||++.+||.||++||||+.+...++
T Consensus 29 ~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~ 92 (158)
T 3hhj_A 29 LIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNL 92 (158)
T ss_dssp EEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGC
T ss_pred EEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceE
Confidence 334444444 4789999998753 48999999999999999999999999999999876543
No 49
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.71 E-value=4.8e-17 Score=106.90 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=52.1
Q ss_pred EEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 28 ITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 28 ~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
+++++.+++++||+++.+. ++.|+||||++++|||+++||+||++||||+.+.....++.+..
T Consensus 52 v~vl~~~~~~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~ 117 (198)
T 1vhz_A 52 VMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSM 117 (198)
T ss_dssp EEEEEEETTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEC
T ss_pred EEEEEEECCEEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeC
Confidence 3344445559999987653 35899999999999999999999999999999988888887763
No 50
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.71 E-value=3.9e-18 Score=103.63 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=50.7
Q ss_pred EEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 29 TTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 29 ~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
++++..++++||+||... +|.|.||||++++|||+.+||.||++||||+.+...+.++.+.
T Consensus 9 ~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~ 72 (129)
T 1mut_A 9 GIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLE 72 (129)
T ss_dssp EECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCB
T ss_pred EEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEE
Confidence 334456789999998754 4899999999999999999999999999999887666655544
No 51
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.70 E-value=7.2e-17 Score=112.39 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=53.5
Q ss_pred CCceeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeece
Q psy11365 21 CPTMALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGR 83 (95)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~ 83 (95)
++.....+.+++.+++++||++|... +|.|.||||++++|||+++||.||++||||+.+...+
T Consensus 199 ~~~~~~~v~~vi~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~ 263 (341)
T 2qjo_A 199 YAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPV 263 (341)
T ss_dssp SCCCEEEEEEEEEETTEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHH
T ss_pred CCCCceEEEEEEEeCCEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCcccccc
Confidence 44556677777778899999998653 5899999999999999999999999999999887443
No 52
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.70 E-value=2.1e-17 Score=106.50 Aligned_cols=63 Identities=32% Similarity=0.268 Sum_probs=51.1
Q ss_pred EEEEEEE-cCCEEEEEEEeC---CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 27 FITTACV-MSTLILLVTSSR---RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 27 ~~~~~~~-~~~~vll~~r~~---~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
.+.++++ .++++||++|.+ .+|.|.||||++++|||+.+||.||++||||+.+...+.++.+.
T Consensus 43 ~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~ 109 (182)
T 2yvp_A 43 ASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFH 109 (182)
T ss_dssp EEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBC
T ss_pred EEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEe
Confidence 3333444 578999999865 35799999999999999999999999999999887766666543
No 53
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.69 E-value=1.9e-16 Score=110.86 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=53.1
Q ss_pred cCCceeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365 20 RCPTMALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL 81 (95)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~ 81 (95)
.++.....+.+++.+++++||++|... +|.|.||||++++|||+++||.||++||||+.+..
T Consensus 203 ~~~~~~~~v~~vv~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~ 266 (352)
T 2qjt_B 203 PFKPNFVTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTH 266 (352)
T ss_dssp SSCCEEEEEEEEEEETTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCH
T ss_pred CCCCCceEEEEEEEECCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCccc
Confidence 344556677777778899999999764 47999999999999999999999999999998764
No 54
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.69 E-value=3.1e-17 Score=109.44 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=53.5
Q ss_pred eeEEEEEEEEcCCEEEEEEEeCCC------CCEEe-ceeecCCCCC------HHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 24 MALFITTACVMSTLILLVTSSRRP------EHWIV-PGGGVEPEEE------PAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 24 ~~~~~~~~~~~~~~vll~~r~~~~------g~w~~-PgG~ie~gE~------~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
..++..+++.+++++||++|...+ |.|.| |||++++||| +++||+||++||||+.+....+++.+..
T Consensus 67 ~q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~ 146 (211)
T 3e57_A 67 KQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINS 146 (211)
T ss_dssp EEEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEC
T ss_pred cceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEec
Confidence 344555666678999999997643 68998 9999999998 4999999999999999999999998876
Q ss_pred C
Q psy11365 91 R 91 (95)
Q Consensus 91 ~ 91 (95)
.
T Consensus 147 ~ 147 (211)
T 3e57_A 147 S 147 (211)
T ss_dssp C
T ss_pred c
Confidence 3
No 55
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.69 E-value=9.5e-17 Score=102.27 Aligned_cols=65 Identities=22% Similarity=0.169 Sum_probs=51.3
Q ss_pred eEEEEEEEE-cCCEEEEEEEeCC----CCCEE-eceeecCCCCCHHHHHHHHHHHHhCCceeec--eeEEEEe
Q psy11365 25 ALFITTACV-MSTLILLVTSSRR----PEHWI-VPGGGVEPEEEPAATALREVAEEAGVLGKLG--RSLGVFE 89 (95)
Q Consensus 25 ~~~~~~~~~-~~~~vll~~r~~~----~g~w~-~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~--~~~~~~~ 89 (95)
+..+.+++. .++++||++|... +|.|. ||||++++|||+.+||.||++||||+.+... ..++.+.
T Consensus 34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~ 106 (171)
T 1q27_A 34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFS 106 (171)
T ss_dssp CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEEC
T ss_pred ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEe
Confidence 444444444 5789999987542 58998 9999999999999999999999999998763 4555554
No 56
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.69 E-value=2.7e-16 Score=107.92 Aligned_cols=74 Identities=26% Similarity=0.385 Sum_probs=56.8
Q ss_pred CceeEEEEEEEE--cCC----EEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee--eceeEEEEecC
Q psy11365 22 PTMALFITTACV--MST----LILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK--LGRSLGVFEVR 91 (95)
Q Consensus 22 ~~~~~~~~~~~~--~~~----~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~--~~~~~~~~~~~ 91 (95)
+...+.+.++++ +++ +|||++|... +|.|.||||++++|||+.+||.||++||||+.+. ....++.+..+
T Consensus 36 ~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l~~~~~~ 115 (273)
T 2fml_A 36 EKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRP 115 (273)
T ss_dssp CCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEEEECCT
T ss_pred CCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEEEEEcCC
Confidence 344444444444 333 8999999764 4899999999999999999999999999997654 45667788777
Q ss_pred CCCC
Q psy11365 92 PKVP 95 (95)
Q Consensus 92 ~~~p 95 (95)
.++|
T Consensus 116 ~r~~ 119 (273)
T 2fml_A 116 DRDP 119 (273)
T ss_dssp TSST
T ss_pred CCCC
Confidence 7664
No 57
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.68 E-value=2.3e-16 Score=103.03 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=47.5
Q ss_pred CCEEEEEEEeC---------CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 35 STLILLVTSSR---------RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 35 ~~~vll~~r~~---------~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
++++||+++.+ +++.|+||||+++ |||+.+||+||++||||+.+.....++.+..
T Consensus 57 ~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~ 120 (191)
T 3o6z_A 57 KKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYM 120 (191)
T ss_dssp TTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEES
T ss_pred CCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEe
Confidence 58999998876 5578999999999 9999999999999999999887888877644
No 58
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.67 E-value=2.5e-16 Score=104.25 Aligned_cols=55 Identities=27% Similarity=0.287 Sum_probs=47.6
Q ss_pred CCEEEEEEEeCC--------CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 35 STLILLVTSSRR--------PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 35 ~~~vll~~r~~~--------~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
++++||+++.+. ++.|+||||++++|||+++||+||++||||+.+.....++.+.
T Consensus 69 ~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~ 131 (209)
T 1g0s_A 69 RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFL 131 (209)
T ss_dssp TTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_pred CCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEe
Confidence 679999887653 3579999999999999999999999999999988777777663
No 59
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.67 E-value=2.6e-16 Score=102.86 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=47.0
Q ss_pred CceeEEEEEEEEc-C-CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCc
Q psy11365 22 PTMALFITTACVM-S-TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVL 78 (95)
Q Consensus 22 ~~~~~~~~~~~~~-~-~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~ 78 (95)
...++.+.+++++ + +++||+++. ..|.|.||||++++|||+.+||+||++||||+.
T Consensus 42 ~~~h~~~~~vv~~~~~~~vLL~~r~-~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~ 99 (197)
T 3fcm_A 42 TIAHLTSSAFAVNKERNKFLMIHHN-IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVK 99 (197)
T ss_dssp SSEEEEEEEEEECTTSCEEEEEEET-TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCS
T ss_pred CCccEEEEEEEEECCCCEEEEEEec-CCCCEECCccccCCCCCHHHHHHHHHHHHHCCC
Confidence 3455566666665 3 499999885 568999999999999999999999999999997
No 60
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.66 E-value=1.7e-16 Score=108.96 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=47.1
Q ss_pred EEEEEEEc--CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365 27 FITTACVM--STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL 81 (95)
Q Consensus 27 ~~~~~~~~--~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~ 81 (95)
++++++.+ ++++||++|.+.+|.|.||||++++|||+.+||+||++||||+.+..
T Consensus 103 ~v~avv~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~ 159 (271)
T 2a6t_A 103 VRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS 159 (271)
T ss_dssp EEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTT
T ss_pred eEEEEEEECCCCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCcee
Confidence 33445554 37999999977779999999999999999999999999999998764
No 61
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.66 E-value=2.2e-16 Score=99.32 Aligned_cols=52 Identities=31% Similarity=0.406 Sum_probs=43.1
Q ss_pred CCEEEEEEEeCC---CCCEEeceeecCCCCCHH-HHHHHHHHHHhC-CceeeceeEE
Q psy11365 35 STLILLVTSSRR---PEHWIVPGGGVEPEEEPA-ATALREVAEEAG-VLGKLGRSLG 86 (95)
Q Consensus 35 ~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~-~aa~REl~EE~G-l~~~~~~~~~ 86 (95)
++++||+||... +|.|+||||+++.||++. +||.||++|||| +.+.....++
T Consensus 33 ~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~ 89 (155)
T 1x51_A 33 GAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLG 89 (155)
T ss_dssp SEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECC
T ss_pred CCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecc
Confidence 478999998653 489999999999999996 999999999999 7665444443
No 62
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.66 E-value=3.3e-16 Score=103.26 Aligned_cols=61 Identities=26% Similarity=0.359 Sum_probs=51.1
Q ss_pred EEEEEE-cCCEEEEEEEeCC---CCCEEeceeecC-CCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365 28 ITTACV-MSTLILLVTSSRR---PEHWIVPGGGVE-PEEEPAATALREVAEEAGVLGKLGRSLGVF 88 (95)
Q Consensus 28 ~~~~~~-~~~~vll~~r~~~---~g~w~~PgG~ie-~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~ 88 (95)
+.++++ .++++||+++.+. ++.|.||||+++ +|||+.+||+||++||||+.+....+++.+
T Consensus 46 v~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~ 111 (207)
T 1mk1_A 46 VAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDL 111 (207)
T ss_dssp EEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEE
Confidence 333444 5789999988653 368999999999 999999999999999999999888877765
No 63
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.8e-17 Score=100.40 Aligned_cols=45 Identities=31% Similarity=0.502 Sum_probs=40.9
Q ss_pred CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365 36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL 81 (95)
Q Consensus 36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~ 81 (95)
+++||++|. .+|.|.||||++++|||+.+||.||++||||+.+..
T Consensus 17 ~~vLl~~r~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~ 61 (146)
T 2jvb_A 17 SKILLVQGT-ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTD 61 (146)
T ss_dssp SEEEEECCS-SSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSS
T ss_pred CEEEEEEEc-CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchH
Confidence 899999874 468999999999999999999999999999998763
No 64
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.62 E-value=1.4e-15 Score=100.65 Aligned_cols=64 Identities=27% Similarity=0.346 Sum_probs=48.9
Q ss_pred eEEEEEEEEcC---CEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365 25 ALFITTACVMS---TLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88 (95)
Q Consensus 25 ~~~~~~~~~~~---~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~ 88 (95)
++.+.+++.++ +++||+++.+. ++.|+||||++++|||+++||+||++||||+.+....+++.+
T Consensus 63 av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~ 132 (212)
T 2dsc_A 63 GVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAV 132 (212)
T ss_dssp EEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCE
T ss_pred EEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccE
Confidence 44444444443 48999886553 358999999999999999999999999999988766655433
No 65
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.60 E-value=5.5e-15 Score=104.52 Aligned_cols=56 Identities=30% Similarity=0.423 Sum_probs=48.0
Q ss_pred CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365 36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92 (95)
Q Consensus 36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 92 (95)
.+|||++|. ..|.|.||||++++|||+.+||+||++||||+.+....+++.+.+..
T Consensus 38 ~~vLLv~r~-~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~ 93 (364)
T 3fjy_A 38 IEVCIVHRP-KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPL 93 (364)
T ss_dssp EEEEEEEET-TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---
T ss_pred eEEEEEEcC-CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEec
Confidence 389999984 45899999999999999999999999999999998888888766543
No 66
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=99.99 Aligned_cols=43 Identities=19% Similarity=0.021 Sum_probs=37.7
Q ss_pred CCCEEeceeecCC-CCCHHHHHHHHHHHHhCCce--eeceeEEEEe
Q psy11365 47 PEHWIVPGGGVEP-EEEPAATALREVAEEAGVLG--KLGRSLGVFE 89 (95)
Q Consensus 47 ~g~w~~PgG~ie~-gE~~~~aa~REl~EE~Gl~~--~~~~~~~~~~ 89 (95)
++.|+||+|++++ |||+++||+||++||||+.+ .....++.+.
T Consensus 94 ~~~welPgG~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~l~~~~ 139 (218)
T 3q91_A 94 GVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYW 139 (218)
T ss_dssp CEEEECEEEECCSSSCCHHHHHHHHHHHHHCBCCCGGGCEEEEEEE
T ss_pred CeEEECCcceeCCCCCCHHHHHHHHHHHHhCCccccCceEEEEEEe
Confidence 4689999999999 99999999999999999998 5666666654
No 67
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.59 E-value=1.4e-15 Score=100.83 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=41.6
Q ss_pred cCCEEEEEEEeCCCCCEEeceeecCCCC-CHHHHHHHHHHHHhCCceeec
Q psy11365 34 MSTLILLVTSSRRPEHWIVPGGGVEPEE-EPAATALREVAEEAGVLGKLG 82 (95)
Q Consensus 34 ~~~~vll~~r~~~~g~w~~PgG~ie~gE-~~~~aa~REl~EE~Gl~~~~~ 82 (95)
.++++||++| .+|.|+||||++++|| |+++||.||++||||+.+...
T Consensus 54 ~~~~vLl~~r--~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~ 101 (212)
T 1u20_A 54 IRRVLLMMMR--FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATV 101 (212)
T ss_dssp CCEEEEEEEE--TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGC
T ss_pred cCCEEEEEEe--CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCcccc
Confidence 3567888887 5789999999999999 999999999999999987744
No 68
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.53 E-value=1.8e-14 Score=102.42 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=52.7
Q ss_pred eeEEEEEEEE-cCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365 24 MALFITTACV-MSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90 (95)
Q Consensus 24 ~~~~~~~~~~-~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 90 (95)
...++++++. .++++||+||... +|.|+||||+++.| |+++|+.||++||||+.+...+.++.+.+
T Consensus 239 ~~~~~~~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h 308 (369)
T 3fsp_A 239 QVPLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEH 308 (369)
T ss_dssp EEEEEEEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEE
T ss_pred eEEEEEEEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEE
Confidence 3344444555 4789999999653 48999999999999 99999999999999999887766665544
No 69
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.49 E-value=9.3e-14 Score=93.65 Aligned_cols=66 Identities=14% Similarity=0.045 Sum_probs=50.6
Q ss_pred eeEEEEEEEEc-CCEEEEEEEeC----CCCCEEec-eeecCCC------CC---HHHHHHHHHHHHhCCcee-----ece
Q psy11365 24 MALFITTACVM-STLILLVTSSR----RPEHWIVP-GGGVEPE------EE---PAATALREVAEEAGVLGK-----LGR 83 (95)
Q Consensus 24 ~~~~~~~~~~~-~~~vll~~r~~----~~g~w~~P-gG~ie~g------E~---~~~aa~REl~EE~Gl~~~-----~~~ 83 (95)
.+.++.+++++ ++++||+||.. .+|.|.+| ||++++| |+ +.+||+||++||||+.+. ...
T Consensus 58 ~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~ 137 (235)
T 2dho_A 58 LHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEIN 137 (235)
T ss_dssp CEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSE
T ss_pred eEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcE
Confidence 45555555554 68999999864 46899999 5999999 88 599999999999999864 245
Q ss_pred eEEEEe
Q psy11365 84 SLGVFE 89 (95)
Q Consensus 84 ~~~~~~ 89 (95)
+++.+.
T Consensus 138 ~l~~~~ 143 (235)
T 2dho_A 138 YLTRIH 143 (235)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 565544
No 70
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.47 E-value=8.5e-14 Score=94.48 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=51.0
Q ss_pred ceeEEEEEEEEc-CCEEEEEEEeC----CCCCEEece-eecCCC------CCH---HHHHHHHHHHHhCCcee-----ec
Q psy11365 23 TMALFITTACVM-STLILLVTSSR----RPEHWIVPG-GGVEPE------EEP---AATALREVAEEAGVLGK-----LG 82 (95)
Q Consensus 23 ~~~~~~~~~~~~-~~~vll~~r~~----~~g~w~~Pg-G~ie~g------E~~---~~aa~REl~EE~Gl~~~-----~~ 82 (95)
..+.++.+++++ ++++||+||.. .+|.|.+|+ |++++| |++ .+||+||++||||+.+. ..
T Consensus 68 ~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l 147 (246)
T 2pny_A 68 LLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDI 147 (246)
T ss_dssp CCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGS
T ss_pred cEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCcccc
Confidence 345555555554 68999999864 468999995 999999 887 99999999999999854 24
Q ss_pred eeEEEEe
Q psy11365 83 RSLGVFE 89 (95)
Q Consensus 83 ~~~~~~~ 89 (95)
.+++.+.
T Consensus 148 ~~l~~~~ 154 (246)
T 2pny_A 148 VFMTIYH 154 (246)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5555543
No 71
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=99.46 E-value=7.4e-13 Score=87.64 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=52.6
Q ss_pred EEEEEEEE-cCC--EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhC------CceeeceeEEEEecCCCCC
Q psy11365 26 LFITTACV-MST--LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAG------VLGKLGRSLGVFEVRPKVP 95 (95)
Q Consensus 26 ~~~~~~~~-~~~--~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~G------l~~~~~~~~~~~~~~~~~p 95 (95)
.+.++++. +.+ +|||+|+. .+.|.||||++++||+..+|++|||.||+| ...++.++++.+.-++.|+
T Consensus 60 sV~avil~~~~~~phVLLlq~~--~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~wwRp~fet 136 (208)
T 3bho_A 60 TVEGVLIVHEHRLPHVLLLQLG--TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 136 (208)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE--TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEEEECSSSS
T ss_pred EEEEEEEEcCCCCcEEEEEEcC--CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEEecCCCCC
Confidence 33344433 344 79999974 459999999999999999999999999999 5667788999887776653
No 72
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=99.45 E-value=2.8e-13 Score=93.81 Aligned_cols=41 Identities=34% Similarity=0.494 Sum_probs=38.0
Q ss_pred EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCc
Q psy11365 37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVL 78 (95)
Q Consensus 37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~ 78 (95)
++||++|.. .|.|.||||++++|||+.+||+||++||||+.
T Consensus 140 ~vLl~~r~~-~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~ 180 (292)
T 1q33_A 140 QFVAIKRKD-CGEWAIPGGMVDPGEKISATLKREFGEEALNS 180 (292)
T ss_dssp EEEEEECTT-TCSEECCCEECCTTCCHHHHHHHHHHHHHSCG
T ss_pred EEEEEEecC-CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCc
Confidence 699998854 58999999999999999999999999999987
No 73
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=99.43 E-value=1.4e-13 Score=91.90 Aligned_cols=42 Identities=26% Similarity=0.288 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCCCEEeceeecCCCC-CHHHHHHHHHHHHhCCcee
Q psy11365 37 LILLVTSSRRPEHWIVPGGGVEPEE-EPAATALREVAEEAGVLGK 80 (95)
Q Consensus 37 ~vll~~r~~~~g~w~~PgG~ie~gE-~~~~aa~REl~EE~Gl~~~ 80 (95)
++||++|. ++.|+||||++++|| |+++||+||++||||+.+.
T Consensus 66 ~~ll~~r~--~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~ 108 (217)
T 2xsq_A 66 AILMQMRF--DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAA 108 (217)
T ss_dssp EEEEEEET--TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGG
T ss_pred cEEEEEcc--CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCc
Confidence 56776664 689999999999999 9999999999999999876
No 74
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.38 E-value=7.1e-13 Score=89.36 Aligned_cols=45 Identities=40% Similarity=0.607 Sum_probs=39.9
Q ss_pred EEEEEEEeCC----CCCEEeceeecCCCCC--------------------HHHHHHHHHHHHhCCceee
Q psy11365 37 LILLVTSSRR----PEHWIVPGGGVEPEEE--------------------PAATALREVAEEAGVLGKL 81 (95)
Q Consensus 37 ~vll~~r~~~----~g~w~~PgG~ie~gE~--------------------~~~aa~REl~EE~Gl~~~~ 81 (95)
+|||.||... +|.|.||||+++++|+ +..||+||++||||+.+..
T Consensus 25 ~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~ 93 (232)
T 3qsj_A 25 EVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAV 93 (232)
T ss_dssp EEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSE
T ss_pred EEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceecc
Confidence 8999999763 5899999999999987 5899999999999997653
No 75
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=99.35 E-value=3.9e-12 Score=88.60 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=40.1
Q ss_pred EEEEEEEeC----CCCCEE-eceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365 37 LILLVTSSR----RPEHWI-VPGGGVEPEEEPAATALREVAEEAGVLGK 80 (95)
Q Consensus 37 ~vll~~r~~----~~g~w~-~PgG~ie~gE~~~~aa~REl~EE~Gl~~~ 80 (95)
++||.||+. +||.|. +++|++++|||+.+||.||+.||+|+...
T Consensus 134 ~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~ 182 (300)
T 3dup_A 134 HLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEA 182 (300)
T ss_dssp EEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHH
T ss_pred EEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChh
Confidence 899999965 579995 99999999999999999999999999764
No 76
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=99.32 E-value=9.9e-13 Score=86.61 Aligned_cols=52 Identities=15% Similarity=0.001 Sum_probs=39.8
Q ss_pred EEEEEEEeCCCCCEEeceeecCCCC-CHHHHHHHHHHHHhCC-ceeeceeEEEEec
Q psy11365 37 LILLVTSSRRPEHWIVPGGGVEPEE-EPAATALREVAEEAGV-LGKLGRSLGVFEV 90 (95)
Q Consensus 37 ~vll~~r~~~~g~w~~PgG~ie~gE-~~~~aa~REl~EE~Gl-~~~~~~~~~~~~~ 90 (95)
.+|++.| .+|.|.||||+||+|| |+++|+.||+.||+|+ .+...+++....+
T Consensus 45 ~iLmQ~R--~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~ 98 (214)
T 3kvh_A 45 SVLMQMR--FDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLT 98 (214)
T ss_dssp EEEEEEE--TTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC
T ss_pred eEEEeee--eCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEec
Confidence 3555554 4689999999999999 9999999999999997 4666666665543
No 77
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=99.27 E-value=1e-11 Score=87.10 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=51.8
Q ss_pred eeEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHh-CCceeeceeEEEEecCCC
Q psy11365 24 MALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEA-GVLGKLGRSLGVFEVRPK 93 (95)
Q Consensus 24 ~~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~-Gl~~~~~~~~~~~~~~~~ 93 (95)
..+.+.+++.++++|||+ ...| |.+|||.++.++ .++|+||++||+ |+.++...++++|+.+..
T Consensus 182 p~~~vgaii~~~g~vLL~---~~~G-W~LPG~~~~~~~--~~~a~RE~~EEttGl~v~~~~L~~v~~~~~~ 246 (321)
T 3rh7_A 182 GEIRLGAVLEQQGAVFLA---GNET-LSLPNCTVEGGD--PARTLAAYLEQLTGLNVTIGFLYSVYEDKSD 246 (321)
T ss_dssp SCEEEEEEEESSSCEEEB---CSSE-EBCCEEEESSSC--HHHHHHHHHHHHHSSCEEEEEEEEEEECTTT
T ss_pred CcceEEEEEEECCEEEEe---eCCC-ccCCcccCCCCh--hHHHHHHHHHHhcCCEEeeceEEEEEEcCCC
Confidence 346677777788999999 3457 999988665444 459999999997 999999999999987653
No 78
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=37.40 E-value=19 Score=18.86 Aligned_cols=16 Identities=6% Similarity=0.187 Sum_probs=12.9
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-.|++.||||..+...
T Consensus 26 ~I~~I~e~tg~~I~i~ 41 (71)
T 1vig_A 26 NINRIKDQYKVSVRIP 41 (71)
T ss_dssp HHHHHHHHTCCEEECC
T ss_pred cHHHHHHHHCCEEEEC
Confidence 3789999999987644
No 79
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=36.92 E-value=48 Score=19.97 Aligned_cols=33 Identities=6% Similarity=0.048 Sum_probs=23.8
Q ss_pred ecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 56 GVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 56 ~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
.+++||++.+++.+ +.++-|+.......+|.+.
T Consensus 18 rL~~Gedl~~~l~~-~~~~~~i~~a~v~~iGsl~ 50 (147)
T 3hwu_A 18 VLRHGDNVLQNLEQ-LARDEHIPSASFVGIGFMS 50 (147)
T ss_dssp EEETTCBHHHHHHH-HHHHTTCSEEEEEEEEEEE
T ss_pred EECCCChHHHHHHH-HHHHcCCCEEEEEEEeccc
Confidence 56789999998665 5556688877667777553
No 80
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=33.60 E-value=78 Score=18.91 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=22.7
Q ss_pred ecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 56 GVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 56 ~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
.+++||++.+++.+-++ +-|+.......+|.+.
T Consensus 15 rl~~Gedl~~~i~~~~~-~~~i~~a~vs~iGsl~ 47 (146)
T 2h6l_A 15 RLDYGKDLVRQIEEFLE-EKGIHAAHISAIGAVR 47 (146)
T ss_dssp ECCTTSBHHHHHHHHHH-HHTCCSEEEEEEEEEE
T ss_pred EECCCCCHHHHHHHHHH-HcCCCEEEEEEEEEEE
Confidence 67899999998776554 4477655556666553
No 81
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=32.81 E-value=83 Score=18.97 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=23.3
Q ss_pred ecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 56 GVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 56 ~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
.+++||++.+++.+-++ +-|+.......+|.+.
T Consensus 21 rl~~Gedl~~~l~~~~~-~~~i~~a~vs~iGsl~ 53 (149)
T 3htn_A 21 SINNHTEIVKALNAFCK-EKGILSGSINGIGAIG 53 (149)
T ss_dssp EECTTCBHHHHHHHHHH-HHTCCSEEEEEEEEEE
T ss_pred EECCCChHHHHHHHHHH-HcCCcEEEEEEEEEee
Confidence 67899999998776554 4577765556666554
No 82
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=29.54 E-value=41 Score=14.40 Aligned_cols=11 Identities=27% Similarity=0.111 Sum_probs=8.6
Q ss_pred CCHHHHHHHHH
Q psy11365 61 EEPAATALREV 71 (95)
Q Consensus 61 E~~~~aa~REl 71 (95)
.+++++|.|.+
T Consensus 1 dsIEEaA~RIV 11 (26)
T 2drn_C 1 DLIEEAASRIV 11 (26)
T ss_dssp CCHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 36888988876
No 83
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=29.07 E-value=30 Score=19.65 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-.|++.||||..+...
T Consensus 38 ~Ir~I~eetg~~I~I~ 53 (104)
T 2ctk_A 38 GIRKMMDEFEVNIHVP 53 (104)
T ss_dssp HHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHCCEEEec
Confidence 4799999999987754
No 84
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=28.87 E-value=34 Score=18.45 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=12.9
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-.|++.|+||..+...
T Consensus 35 ~Ik~I~~~tga~I~i~ 50 (85)
T 2opv_A 35 TIKQLQERAGVKMILI 50 (85)
T ss_dssp HHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHHCCEEEEc
Confidence 4788999999987643
No 85
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=27.40 E-value=1e+02 Score=18.30 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=22.6
Q ss_pred ecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365 56 GVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89 (95)
Q Consensus 56 ~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~ 89 (95)
.+++||++.+++.+-++ +-|+..-....+|.+.
T Consensus 15 rl~~Gedl~~~i~~~~~-~~~i~~a~vs~iGsl~ 47 (143)
T 2dt4_A 15 RVPEGEELLTYIKNFCK-KEGIETAIINGIGTLK 47 (143)
T ss_dssp EECTTCBHHHHHHHHHH-HHTCCSEEEEEEEEEE
T ss_pred EECCCCcHHHHHHHHHH-HcCCCEEEEEEEEEEE
Confidence 67899999998776554 4477655556665553
No 86
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=26.81 E-value=40 Score=18.61 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=12.6
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-+|+++|+||.++...
T Consensus 36 ~Ik~I~~~tga~I~I~ 51 (94)
T 1x4m_A 36 TIKQLQERAGVKMVMI 51 (94)
T ss_dssp HHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHCCeEEec
Confidence 3688999999987643
No 87
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=26.61 E-value=41 Score=17.58 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=12.9
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-.++++|+||..+...
T Consensus 26 ~Ik~I~~~tga~I~i~ 41 (73)
T 2axy_A 26 SVKKMREESGARINIS 41 (73)
T ss_dssp HHHHHHHHHCCEEEEC
T ss_pred HHHHHHHHHCCEEEEe
Confidence 4688999999987654
No 88
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=25.34 E-value=72 Score=18.02 Aligned_cols=29 Identities=3% Similarity=-0.013 Sum_probs=19.8
Q ss_pred cCCCCCHHHHHHHHHHHHhCCceeeceeEE
Q psy11365 57 VEPEEEPAATALREVAEEAGVLGKLGRSLG 86 (95)
Q Consensus 57 ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~ 86 (95)
+++.||+.. .+.-+.|.||+....-+++.
T Consensus 30 I~~~etv~~-~ke~V~eqTgIp~~~Q~LL~ 58 (94)
T 4efo_A 30 IHSYNTATI-FHELVYKQTKIISSNQELIY 58 (94)
T ss_dssp EETTCBHHH-HHHHHHHHHCCCGGGEEEEE
T ss_pred eccchHHHH-HHHHHHHHhCCCHHHHHHHh
Confidence 445566655 57778999999876555554
No 89
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=24.29 E-value=68 Score=17.37 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=11.8
Q ss_pred ecCCCCCHHHHHHHH
Q psy11365 56 GVEPEEEPAATALRE 70 (95)
Q Consensus 56 ~ie~gE~~~~aa~RE 70 (95)
.+++|+|+.++|.+.
T Consensus 16 ~~~~g~tlL~a~~~~ 30 (93)
T 1wri_A 16 DVEPGERLIDIGSEK 30 (93)
T ss_dssp EECTTSCHHHHHHHH
T ss_pred EECCCCcHHHHHHHC
Confidence 356789999998774
No 90
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=24.16 E-value=49 Score=17.64 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=12.9
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-.++++|+||..+...
T Consensus 28 ~Ik~I~~~tga~I~i~ 43 (82)
T 1zzk_A 28 RIKQIRHESGASIKID 43 (82)
T ss_dssp HHHHHHHHHCCEEEEC
T ss_pred HHHHHHHHHCCEEEEc
Confidence 5789999999987654
No 91
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=23.94 E-value=85 Score=18.75 Aligned_cols=25 Identities=8% Similarity=-0.089 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCceeec
Q psy11365 58 EPEEEPAATALREVAEEAGVLGKLG 82 (95)
Q Consensus 58 e~gE~~~~aa~REl~EE~Gl~~~~~ 82 (95)
..|+++.+.+.+|+.+-+|..+...
T Consensus 96 rdg~~L~~~L~~el~~~~g~~v~~~ 120 (129)
T 3t3l_A 96 HDGVSLHELLAAELTKALKTKLDLS 120 (129)
T ss_dssp TTCCBHHHHHHHHHHHHHTSCCCCT
T ss_pred CCCchHHHHHHHHHHHHhCCceeee
Confidence 4588999999999999999877643
No 92
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=23.85 E-value=38 Score=17.15 Aligned_cols=11 Identities=45% Similarity=0.350 Sum_probs=7.7
Q ss_pred HHHHHHHHHHH
Q psy11365 64 AATALREVAEE 74 (95)
Q Consensus 64 ~~aa~REl~EE 74 (95)
--.|.||++|-
T Consensus 41 F~~aVREVYEh 51 (53)
T 1zl8_A 41 FFGAVREVYET 51 (53)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34578888874
No 93
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=23.81 E-value=1.2e+02 Score=17.99 Aligned_cols=33 Identities=6% Similarity=0.063 Sum_probs=22.0
Q ss_pred ecCCCCCHHHHHHHHHHHHhCCceeec-eeEEEEe
Q psy11365 56 GVEPEEEPAATALREVAEEAGVLGKLG-RSLGVFE 89 (95)
Q Consensus 56 ~ie~gE~~~~aa~REl~EE~Gl~~~~~-~~~~~~~ 89 (95)
.+++||++.+++.+-+ .+-|+..... ..+|.+.
T Consensus 8 rL~~Gedl~~~i~~~~-~~~~i~~a~v~~~iGsl~ 41 (142)
T 2p6y_A 8 RLTRGMDLKQQIVQLV-QQHRIHAGSIASCVGCLS 41 (142)
T ss_dssp EECTTCBHHHHHHHHH-HHTTCSSEEEEEEEEEEE
T ss_pred EECCCCcHHHHHHHHH-HHhCCCEEEEEEeEEEEE
Confidence 6789999999876654 5557765444 5565543
No 94
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=23.63 E-value=80 Score=17.06 Aligned_cols=14 Identities=7% Similarity=-0.125 Sum_probs=11.4
Q ss_pred ecCCCCCHHHHHHH
Q psy11365 56 GVEPEEEPAATALR 69 (95)
Q Consensus 56 ~ie~gE~~~~aa~R 69 (95)
.+.+|+|+.++|.+
T Consensus 15 ~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 15 ECPEDTYILDAAEE 28 (94)
T ss_dssp ECCTTSCHHHHHHH
T ss_pred EECCCCcHHHHHHH
Confidence 35678999999877
No 95
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=23.23 E-value=48 Score=18.00 Aligned_cols=17 Identities=18% Similarity=0.409 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCceeece
Q psy11365 67 ALREVAEEAGVLGKLGR 83 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~~ 83 (95)
-+++++|+||..+...+
T Consensus 35 ~Ik~I~~~tga~I~I~~ 51 (89)
T 1j5k_A 35 RIKQIRHESGASIKIDE 51 (89)
T ss_dssp HHHHHHHHTCCEEEECS
T ss_pred hHHHHHHHhCCeEEecC
Confidence 47889999999876543
No 96
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=23.17 E-value=47 Score=18.48 Aligned_cols=16 Identities=25% Similarity=0.301 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
..|++.|+||..+...
T Consensus 38 ~Ir~I~e~tg~~I~i~ 53 (95)
T 2ctm_A 38 AIRKIMDEFKVDIRFP 53 (95)
T ss_dssp HHHHHHHHHTCEEECC
T ss_pred hHHHHHHHHCCeEEec
Confidence 4789999999987753
No 97
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=23.16 E-value=46 Score=18.58 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=12.7
Q ss_pred HHHHHHHHh-CCceeec
Q psy11365 67 ALREVAEEA-GVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~-Gl~~~~~ 82 (95)
..|++.||| |..+...
T Consensus 38 ~Ir~I~eetggv~I~i~ 54 (95)
T 2ctj_A 38 LIRSIMEECGGVHIHFP 54 (95)
T ss_dssp HHHHHHHHHTSCEEECC
T ss_pred hHHHHHHHcCCCEEEeC
Confidence 579999999 8877643
No 98
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=22.70 E-value=78 Score=17.01 Aligned_cols=18 Identities=22% Similarity=-0.045 Sum_probs=13.4
Q ss_pred cCCCCCHHHHHHHHHHHHhCCce
Q psy11365 57 VEPEEEPAATALREVAEEAGVLG 79 (95)
Q Consensus 57 ie~gE~~~~aa~REl~EE~Gl~~ 79 (95)
+.+|+|+.++|.+ .|+.+
T Consensus 17 ~~~g~tlL~a~~~-----~gi~i 34 (95)
T 1frr_A 17 VPEGTTILDAAEE-----AGYDL 34 (95)
T ss_dssp ECTTCCHHHHHHH-----TTCCC
T ss_pred eCCCCcHHHHHHH-----cCCCC
Confidence 4678999999876 36654
No 99
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.45 E-value=49 Score=17.99 Aligned_cols=15 Identities=0% Similarity=0.025 Sum_probs=12.0
Q ss_pred HHHHHHHhCCceeec
Q psy11365 68 LREVAEEAGVLGKLG 82 (95)
Q Consensus 68 ~REl~EE~Gl~~~~~ 82 (95)
.|++.|+||..+...
T Consensus 32 Ik~Iqe~Tga~I~I~ 46 (83)
T 2dgr_A 32 IKRIQQRTHTYIVTP 46 (83)
T ss_dssp HHHHHHHTTCEEECC
T ss_pred HHHHHHHhCCeEEec
Confidence 578999999987644
No 100
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=22.25 E-value=57 Score=17.01 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCceeece
Q psy11365 67 ALREVAEEAGVLGKLGR 83 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~~ 83 (95)
-.++++|+||..+...+
T Consensus 26 ~Ik~I~~~tga~I~i~~ 42 (76)
T 2p2r_A 26 KINEIRQMSGAQIKIAN 42 (76)
T ss_dssp HHHHHHHHHCCEEEECC
T ss_pred HHHHHHHHHCCEEEEcC
Confidence 46889999999876543
No 101
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=22.03 E-value=55 Score=18.38 Aligned_cols=16 Identities=13% Similarity=0.273 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-+|++.|+||..+...
T Consensus 36 ~Ik~I~~~tga~I~I~ 51 (104)
T 1we8_A 36 TIRSICKASGAKITCD 51 (104)
T ss_dssp HHHHHHHHHCCEEEEC
T ss_pred HHHHHHHHHCCEEEEe
Confidence 5788999999987654
No 102
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=21.88 E-value=58 Score=17.31 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=13.5
Q ss_pred HHHHHHHHhCCceeece
Q psy11365 67 ALREVAEEAGVLGKLGR 83 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~~ 83 (95)
-.++++|+||..+...+
T Consensus 27 ~Ik~I~~~sga~I~i~~ 43 (82)
T 1wvn_A 27 NINEIRQMSGAQIKIAN 43 (82)
T ss_dssp HHHHHHHHHCCEEEECC
T ss_pred hHHHHHHHhCCEEEEec
Confidence 47889999999877543
No 103
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.92 E-value=55 Score=18.22 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-.+++.|+||..+...
T Consensus 38 ~Ik~I~~etg~~I~i~ 53 (97)
T 2ctl_A 38 VITQIRLEHDVNIQFP 53 (97)
T ss_dssp HHHHHHHHHTCEEECC
T ss_pred hHHHHHHHHCCEEEec
Confidence 4688999999987654
No 104
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=20.72 E-value=58 Score=18.53 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-++++.|+||.++...
T Consensus 32 ~Ik~I~~~TGakI~I~ 47 (106)
T 2hh3_A 32 MIKKIQNDAGVRIQFK 47 (106)
T ss_dssp HHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHHCcEEEEe
Confidence 4688999999988754
No 105
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=20.72 E-value=54 Score=18.57 Aligned_cols=16 Identities=6% Similarity=0.435 Sum_probs=12.7
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-+++++|+||.++...
T Consensus 28 ~Ik~I~~~TGa~I~I~ 43 (107)
T 2hh2_A 28 NVKAINQQTGAFVEIS 43 (107)
T ss_dssp HHHHHHHHSSSEEEEC
T ss_pred HHHHHHHHhCCEEEEc
Confidence 3688999999987754
No 106
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=20.48 E-value=65 Score=16.66 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-.+++.++||..+...
T Consensus 24 ~Ik~I~~~tga~I~i~ 39 (76)
T 1dtj_A 24 TLVEYQELTGARIQIS 39 (76)
T ss_dssp HHHHHHHHHCCEEEEC
T ss_pred HHHHHHHHhCCEEEEC
Confidence 4688999999987654
No 107
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.32 E-value=52 Score=18.12 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=13.0
Q ss_pred HHHHHHHHhCCceeec
Q psy11365 67 ALREVAEEAGVLGKLG 82 (95)
Q Consensus 67 a~REl~EE~Gl~~~~~ 82 (95)
-.|++.||||..+...
T Consensus 38 ~Ik~I~~etg~~I~i~ 53 (94)
T 2cte_A 38 KLQDLELKTATKIQIP 53 (94)
T ss_dssp HHHHHHHHTTCCCBCC
T ss_pred hHHHHHHHHCCEEEeC
Confidence 4788999999987753
Done!