RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11365
(95 letters)
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol
polyphosphate metabolism, structural genomics,
structural genomics consortium; HET: IHP; 1.25A {Homo
sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Length = 194
Score = 68.1 bits (166), Expect = 6e-16
Identities = 35/52 (67%), Positives = 43/52 (82%)
Query: 37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
+LLV+SSR P+ WIVPGGG+EPEEEP+ A+REV EEAGV G LGR +G+F
Sbjct: 55 EVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIF 106
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
d.113.1.1 PDB: 1xsb_A 1xsc_A*
Length = 153
Score = 59.0 bits (143), Expect = 7e-13
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
LL+ +S HW P G VEP E+ TALR EEAG+ + F+
Sbjct: 31 FLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFK 82
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Length = 134
Score = 58.4 bits (142), Expect = 1e-12
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
+LL+ W P G +EP E+P TA+REV EE GV G++ +G
Sbjct: 17 VLLIK--TPSNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIH 66
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium
cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP:
d.113.1.1 PDB: 1kt9_A*
Length = 138
Score = 57.6 bits (140), Expect = 2e-12
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
LL+ +S P HW P G V+P E+ A+RE EEA + +
Sbjct: 20 FLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCH 71
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 1.63A {Streptococcus pneumoniae}
Length = 154
Score = 55.5 bits (134), Expect = 2e-11
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95
+L+ + + GG ++ E +REV EE GV + G+ V E R +V
Sbjct: 32 LLVT---KDKGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVD 86
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
NUDT18, NXR1, nucleotide hydrolase, hydrolase,
structural genomics; 2.10A {Homo sapiens}
Length = 156
Score = 55.5 bits (134), Expect = 2e-11
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 16 DSVRRCPTMALFITTACVMSTL--ILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREV 71
+ R ++ A +S +LL+ ++R W +P G +EP E REV
Sbjct: 10 PAPVRLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREV 69
Query: 72 AEEAGVLGKLGRSLGVFEVRP 92
EEAG+ + L V E P
Sbjct: 70 KEEAGLHCEPETLLSVEERGP 90
>3id9_A MUTT/nudix family protein; hydrolase, protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.55A {Bacillus thuringiensis str}
Length = 171
Score = 55.1 bits (133), Expect = 3e-11
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
+LLV W +PGG VE E +RE+ EE G+ K+ + L V +
Sbjct: 36 VLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCD 87
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus
THER HB8, hydrolase, riken structural
genomics/proteomics initia RSGI; 1.70A {Thermus
thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Length = 126
Score = 54.2 bits (131), Expect = 4e-11
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
+LL+ R W+ P G EP E A+REV EE GV ++ L
Sbjct: 16 VLLL--RDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTR 65
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA
exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus
cereus} PDB: 3q4i_A
Length = 205
Score = 55.5 bits (134), Expect = 4e-11
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95
+L V + W +PGG + P A +EV EE G + L +F+ P
Sbjct: 81 LLFV---KEKSDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQP 137
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 54.7 bits (132), Expect = 7e-11
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 24 MALFITTACVM--STLILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREVAEEAGVLG 79
M+L T C++ +LL+ ++P W+ PGG +E E T RE EE G+
Sbjct: 1 MSLQRVTNCIVVDHDQVLLL---QKPRRGWWVAPGGKMEAGESILETVKREYWEETGITV 57
Query: 80 KLGRSLGVFEV 90
K G+F +
Sbjct: 58 KNPELKGIFSM 68
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
{Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
PDB: 2qkm_B*
Length = 271
Score = 54.7 bits (131), Expect = 1e-10
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
+LV + W P G ++ +E A+REV EE G
Sbjct: 116 CVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGF 155
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
hydrolase, GFG, GFG-1, FGF2AS, structural GENO
structural genomics consortium, SGC; HET: FLC; 1.70A
{Homo sapiens}
Length = 199
Score = 53.8 bits (129), Expect = 1e-10
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
+LV R W PGG EPEE+ TA+REV EE G+ + L + +
Sbjct: 40 KILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQ 93
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str} PDB: 3smd_A
Length = 153
Score = 52.5 bits (126), Expect = 3e-10
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 45 RRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
E+W +P G +E E P +REV EE G+ ++ + GVF +
Sbjct: 40 PGGEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFGGKE 87
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, structure initiative; HET:
1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Length = 148
Score = 52.1 bits (125), Expect = 3e-10
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 40 LVTSSRRPEH-WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
+ + P + +PGG +E E REV EE G+ ++G LG +
Sbjct: 32 TMVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEAD 82
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein,
structural genomics, NPPSFA, national on protein
structural and functional analyses; 1.80A {Aquifex
aeolicus}
Length = 139
Score = 51.9 bits (125), Expect = 3e-10
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
I+L+ P +PGG VE E A RE+ EE G+ +L + +GV+
Sbjct: 27 IVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVY 77
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH;
1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB:
1soi_A 1su2_A* 1sz3_A*
Length = 159
Score = 51.7 bits (124), Expect = 6e-10
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 38 ILLVTSSRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91
ILLV P H W +P G VE E P A+RE EE G+ + + LG + R
Sbjct: 27 ILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGR 86
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.27A {Streptococcus suis}
Length = 206
Score = 51.3 bits (123), Expect = 2e-09
Identities = 13/68 (19%), Positives = 28/68 (41%)
Query: 28 ITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV 87
+ T + ++ W +PGG + ++ ++EV EEAG+ + R + +
Sbjct: 71 LDTRAAIFQEDKILLVQENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAI 130
Query: 88 FEVRPKVP 95
+ P
Sbjct: 131 LDKHKNNP 138
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II),
NYSGXRC, 11181H, structural genomics; 2.15A
{Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Length = 364
Score = 51.0 bits (121), Expect = 3e-09
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91
+ +V + + W P G +E E A+RE+ EE G KLG L E
Sbjct: 40 VCIVHRPKY-DDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYP 92
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP:
d.113.1.1 PDB: 1jrk_A 1k26_A
Length = 156
Score = 48.3 bits (115), Expect = 9e-09
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95
+LLV + +I PGG VE E P RE EE G++ + V
Sbjct: 14 VLLV---KHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVE 70
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
cytoplasm, hydrolase, manganese, metal-binding, mRNA
processing; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 48.3 bits (115), Expect = 1e-08
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
ILLV + W P G + +E +REV EE G
Sbjct: 19 ILLVQGTESD-SWSFPRGKISKDENDIDCCIREVKEEIGF 57
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.50A
{Burkholderia pseudomallei}
Length = 157
Score = 48.2 bits (115), Expect = 1e-08
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 38 ILLVTSSRRPE-----HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
ILL+ +R W +PGG V+ E RE+ EE G+ + L V +
Sbjct: 42 ILLI---KRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVD 95
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II),
NYSGXRC, 11180K, structural genomics; 2.00A
{Lactobacillus brevis atcc 367}
Length = 161
Score = 48.1 bits (115), Expect = 1e-08
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 28 ITTACVM----STLILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREVAEEAGVLGKL 81
+ T ++ + +L+ P PGG VE E A A+REV EE G+
Sbjct: 11 LVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSG 70
Query: 82 GRSLGVFE 89
G E
Sbjct: 71 VTFCGTCE 78
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center
for structural GENO JCSG, protein structure initiative,
PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Length = 149
Score = 48.0 bits (114), Expect = 1e-08
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
V + W GG E EE + TA RE EE +
Sbjct: 22 FGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNL 60
>2b06_A MUTT/nudix family protein; structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP:
d.113.1.1
Length = 155
Score = 47.8 bits (114), Expect = 2e-08
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 28 ITTACVM----STLILLVTSSRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGV 77
+T C++ + +++ R + PGG VE +E A + +RE+ EE G+
Sbjct: 9 LTNICLIEDLETQRVVMQ---YRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGL 65
Query: 78 LGKLGRSLGVFE 89
+ + +G+
Sbjct: 66 TIQNPQLVGIKN 77
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP:
d.113.1.1
Length = 153
Score = 47.1 bits (112), Expect = 3e-08
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
LLV R P G +EP E REV EE G G++
Sbjct: 21 YLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTC 77
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 47.8 bits (114), Expect = 3e-08
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 38 ILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90
+LL + P W +P G +E E A RE EEA ++ V+ +
Sbjct: 53 VLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSL 107
>3f13_A Putative nudix hydrolase family member; structural genomics,
PSI-2, protein structure initiative; 1.70A
{Chromobacterium violaceum}
Length = 163
Score = 47.2 bits (112), Expect = 3e-08
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
+L+ + R + +PGG E + +RE+ EE G+ L
Sbjct: 29 VLVT--ASRGGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHI 78
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase,
(D)NDP/(D)NTP binding, dephosphorylation; 2.50A
{Escherichia coli} PDB: 3dku_A
Length = 153
Score = 46.3 bits (110), Expect = 6e-08
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 28 ITTACVMSTL--ILLVTSSRRPE-HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRS 84
+T ACV+ L+V + + W P G +E +E A RE+ EE G+ +
Sbjct: 6 VTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHF 65
Query: 85 LGVFEVR 91
+ + +
Sbjct: 66 IRMHQWI 72
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.20A {Listeria innocua}
Length = 187
Score = 46.3 bits (110), Expect = 9e-08
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 38 ILLVTSSRRPE---------HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
ILL+ S W VPGG V+ E A RE+ EE + GVF
Sbjct: 48 ILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVF 107
Query: 89 E 89
+
Sbjct: 108 D 108
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 45.0 bits (107), Expect = 2e-07
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 38 ILLVTSSRRPEH-------WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
LL+ RR E+ W +PGG V P+E REV EE G+ G G
Sbjct: 22 FLLL---RRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVN 77
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP
pyrophosphohydrolase MUTT dihydroneo triphosphate
pyrophosphohydrolase folate biosynthesis; 1.80A
{Escherichia coli} PDB: 2o5w_A
Length = 150
Score = 44.9 bits (106), Expect = 2e-07
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
+L++ P+ W G VE E A+REV EE +
Sbjct: 24 VLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTI 63
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.02A {Clostridium
perfringens atcc 13124}
Length = 159
Score = 44.6 bits (105), Expect = 3e-07
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 45 RRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
++ + + GG +E E P +RE EEAG+ L + + +
Sbjct: 25 KKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKS 72
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
a.4.5.68 d.113.1.6
Length = 273
Score = 45.4 bits (107), Expect = 3e-07
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG--RSLGVFEVRPK 93
+LL+ P W +PGG V E + LRE EE GV+ L F +
Sbjct: 58 VLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDR 117
Query: 94 VP 95
P
Sbjct: 118 DP 119
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB:
1iry_A 3zr0_A* 3zr1_A
Length = 176
Score = 44.3 bits (105), Expect = 4e-07
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 20 RCPTMALFITTACVM---STLILLVTSSRRPEH-----WIVPGGGVEPEEEPAATALREV 71
R M V+ +LL + W GG V+ E A RE+
Sbjct: 17 RGSHMGASRLYTLVLVLQPQRVLLG---MKKRGFGAGRWNGFGGKVQEGETIEDGARREL 73
Query: 72 AEEAGV 77
EE+G+
Sbjct: 74 QEESGL 79
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 43.4 bits (102), Expect = 1e-06
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 17 SVRRCPTMALFITTACVMSTL--ILLVTSSRRPEH-----WIVPGGGVEPEEEPAATALR 69
+ P F+T ++ IL+V +R H W +PGG +E +E A +R
Sbjct: 198 LWLKAPFKPNFVTVDALVIVNDHILMV---QRKAHPGKDLWALPGGFLECDETIAQAIIR 254
Query: 70 EVAEEAGV------LGKLGRSLGVF 88
E+ EE + L R VF
Sbjct: 255 ELFEETNINLTHEQLAIAKRCEKVF 279
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium
perfringens atcc 13124}
Length = 197
Score = 43.1 bits (101), Expect = 1e-06
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90
L+ W GG + E++ A++E+ EE GV F +
Sbjct: 60 FLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFAL 111
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 43.4 bits (102), Expect = 2e-06
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 2/91 (2%)
Query: 1 MSYDGPVHNHGLCHVDSVRRCPTMALFITTACVMSTLILLVTSSRRPE--HWIVPGGGVE 58
D + + V + +L+V +P +PGG ++
Sbjct: 179 ALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIALPGGFIK 238
Query: 59 PEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
E LRE+ EE + L G
Sbjct: 239 QNETLVEGMLRELKEETRLKVPLPVLRGSIV 269
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans,
hydrolase; 1.70A {Deinococcus radiodurans} SCOP:
d.113.1.1 PDB: 1nqy_A
Length = 194
Score = 41.9 bits (99), Expect = 4e-06
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 53 PGGGVEPEEEPAATALREVAEEAG-------VLGKLGRSLGV--FEVRPKV 94
PGG ++ E P ALRE EE +LG+L F V P +
Sbjct: 69 PGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVL 119
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp.
enterica serovar typhimurium STR. unknown function;
HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 41.0 bits (96), Expect = 6e-06
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 38 ILLVTSSRRPEH-------WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV 87
LL + ++ W + GGGVEP E RE+ EE G L
Sbjct: 41 YLLC---KMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPW 94
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT
family, riken structural genomics/proteomics
initiative, RSGI; HET: APR; 1.65A {Thermus
thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A
1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A
1v8u_A
Length = 170
Score = 40.7 bits (96), Expect = 9e-06
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 52 VPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
+P G +EP E+P A RE+AE+ G+ G L L +
Sbjct: 64 IPAGLIEPGEDPLEAARRELAEQTGLSGDL-TYLFSY 99
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase;
2.00A {Deinococcus radiodurans}
Length = 145
Score = 39.0 bits (92), Expect = 3e-05
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 52 VPGGGVEPEEEPAATALREVAEEAG 76
+ GGVE E+ A A RE+ EE G
Sbjct: 36 IVAGGVEKGEDLGAAAARELLEEVG 60
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 39.5 bits (92), Expect = 3e-05
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 38 ILLVTSSRRP--EHWIVPGGGVEPEEEPAATALREVAEEAG--VLGKLGRSLGVFE 89
LL + RP +W VPGG V+ +E A R E G + G+ GV++
Sbjct: 32 FLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQ 87
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD,
hydrol structural genomics, NPPSFA; HET: RBY; 1.66A
{Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Length = 182
Score = 38.7 bits (91), Expect = 5e-05
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 52 VPGGGVEPEEEPAATALREVAEEAG 76
VP G V+ E P A A RE+ EE G
Sbjct: 72 VPAGKVDEGETPEAAARRELREEVG 96
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein
STRU initiative, midwest center for structural
genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron}
SCOP: a.4.5.68 d.113.1.6
Length = 226
Score = 38.8 bits (90), Expect = 5e-05
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
+LL+ + P W + GG V+ +E A R +AE G+ +G F
Sbjct: 30 LLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAF 82
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose
pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo
sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A*
3l85_A*
Length = 212
Score = 37.8 bits (88), Expect = 1e-04
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 52 VPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
P G ++ E P A ALRE+ EE G G +
Sbjct: 96 FPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAV 132
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A
{Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Length = 198
Score = 37.6 bits (88), Expect = 2e-04
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 52 VPGGGVEPEEEPAATALREVAEEAG 76
G ++P E A RE+ EE G
Sbjct: 79 FSKGLIDPGESVYEAANRELKEEVG 103
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrol structural genomics; 2.10A {Bartonella
henselae}
Length = 158
Score = 37.4 bits (87), Expect = 2e-04
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 44 SRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91
++RPE W PGG VE E P A+ +RE+ EE GV + +
Sbjct: 46 TQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFAS 99
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix
fold, hydrolase; 1.90A {Escherichia coli} SCOP:
d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Length = 209
Score = 37.0 bits (86), Expect = 3e-04
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 43 SSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
+S P + G +E E A RE EEAG+
Sbjct: 85 TSETPWLLEMVAGMIEEGESVEDVARREAIEEAGL 119
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure
INIT NEW YORK SGX research center for structural
genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum
rubrum}
Length = 144
Score = 36.5 bits (85), Expect = 3e-04
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 44 SRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGV 77
++RP W PGG +EP E P A +RE+AEE GV
Sbjct: 25 AQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGV 64
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
1qvj_A*
Length = 292
Score = 36.4 bits (83), Expect = 5e-04
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
L + + W +PGG V+P E+ +AT RE EEA
Sbjct: 139 LQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALN 179
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair;
NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A*
1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A*
3a6v_A*
Length = 129
Score = 35.2 bits (82), Expect = 6e-04
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 44 SRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGV 77
+RR PGG +E E P +RE+ EE G+
Sbjct: 21 TRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A
{Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Length = 191
Score = 35.7 bits (83), Expect = 7e-04
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAG 76
V + + G ++ +E P +E EE G
Sbjct: 70 TWVNGNESGQLIESCAGLLDNDE-PEVCIRKEAIEETG 106
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Length = 140
Score = 34.9 bits (81), Expect = 0.001
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 44 SRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGV 77
++RP W GG VEP+E +RE+ EE G+
Sbjct: 25 AQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGI 64
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA
turnover, structural genomic consortium, SGC; HET: IMP;
1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Length = 217
Score = 35.2 bits (80), Expect = 0.001
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATAL-REVAEEAGVLGKLGR 83
++ R PGG V+ ++ L RE+ EE G R
Sbjct: 66 AILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFR 111
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI
ribose, RV1700, hydrolase; HET: APR; 2.00A
{Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB:
1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Length = 207
Score = 35.0 bits (81), Expect = 0.001
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 38 ILLVTSSRRP---EHWIVPGGGVE-PEEEPAATALREVAEEAG 76
I +V R W +P G ++ E P TA RE+ EE G
Sbjct: 57 IPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVG 99
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase;
1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A*
3ffu_A*
Length = 153
Score = 33.8 bits (78), Expect = 0.003
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 44 SRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGV 77
+RPE+ W PGG +E E P RE+ EE G+
Sbjct: 38 GQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGI 77
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed
4-stranded beta sheet, 2-stranded antiparallel sheet;
NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB:
1jkn_A*
Length = 165
Score = 33.3 bits (77), Expect = 0.004
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 45 RR---PEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
R P+ W +P GG++ E+P A+RE+ EE GV
Sbjct: 32 SRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGV 67
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Bacteroides fragilis}
Length = 140
Score = 32.6 bits (75), Expect = 0.006
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 44 SRRPEH--------WIVPGGGVEPEEEPAATALREVAEEAGV 77
+R + + PGG VE E RE+ EE
Sbjct: 22 VQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDY 63
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese,
zinc; NMR {Escherichia coli} PDB: 2kdw_A
Length = 164
Score = 32.9 bits (76), Expect = 0.006
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 50 WIVPGGGVEPEEEPAATALREVAEEAGVLGK 80
W P GG+ P E RE+ EE G+ K
Sbjct: 33 WQFPQGGINPGESAEQAMYRELFEEVGLSRK 63
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS
protein structure initiative, joint center for
structural G hydrolase; HET: MSE; 2.20A {Escherichia
coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 32.4 bits (74), Expect = 0.011
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 18 VRRCPT--MALFITTACVMSTLI------LLVTSSRRPEHWI-VPGGGVEPEEEPAATAL 68
C + A + I LL +R V G VE E
Sbjct: 125 AMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVA 184
Query: 69 REVAEEAGV 77
REV EE+G+
Sbjct: 185 REVMEESGI 193
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural
genomics, escherichia coli putative nudix hydrolase,
PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP:
d.113.1.2
Length = 180
Score = 31.2 bits (71), Expect = 0.022
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 47 PEHWIVP-GGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91
P GG V+ +E+ +A RE EE G+ G G F
Sbjct: 64 PGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFE 109
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3
family, structural protein structure initiative, PSI;
HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Length = 300
Score = 31.6 bits (71), Expect = 0.026
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 47 PEHW-IVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSL 85
P + GG + ++E AEEA + L R
Sbjct: 148 PGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQA 187
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR
{Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Length = 171
Score = 30.8 bits (70), Expect = 0.031
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 47 PEHW-IVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
P + GG V+ E RE EE V + P
Sbjct: 61 PNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSP 107
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold,
hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB:
2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Length = 212
Score = 30.2 bits (67), Expect = 0.062
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 49 HWIVPGGGVEPEEEPAATAL-REVAEEAGV 77
PGG V+ + L RE+ EE G
Sbjct: 67 RLGFPGGFVDTRDISLEEGLKRELEEELGP 96
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat,
inflammation, alpha/beta motif, metalloproteinas
allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo
sapiens}
Length = 208
Score = 28.9 bits (65), Expect = 0.18
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 8 HNHGLCHVDSVRRCPTMALFITTACVMSTLILLVTSSRRPEHW 50
HN G+ H ++V+ C F C+M+ S P +
Sbjct: 143 HNLGMDHDENVQGCRCQERFEAGRCIMAG----SIGSSFPRMF 181
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 2.70A {Homo sapiens}
Length = 218
Score = 28.8 bits (64), Expect = 0.21
Identities = 8/42 (19%), Positives = 11/42 (26%)
Query: 51 IVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
+ G +P A +E EE G V
Sbjct: 99 LCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWS 140
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation,
RNA structural genomics consortium, SGC, RNA
degradation, RNA B protein; 1.70A {Homo sapiens}
Length = 214
Score = 26.3 bits (57), Expect = 1.3
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 53 PGGGVEPEEEPAATAL-REVAEEAGVLG 79
PGG V+ L R + G L
Sbjct: 59 PGGFVDRRFWSLEDGLNRVLGLGLGCLR 86
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer,
thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A
{Pseudomonas aeruginosa} PDB: 2plq_A
Length = 341
Score = 26.4 bits (58), Expect = 1.4
Identities = 5/35 (14%), Positives = 7/35 (20%)
Query: 58 EPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
+A V G + E P
Sbjct: 77 VAIPGEETEIFSRACRKANVWGVFSLTGERHEEHP 111
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Length = 276
Score = 26.0 bits (58), Expect = 2.1
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 47 PEHWIVPGGG------VEPEEEPAATALREVAEEAGV 77
PE + P G E + L EVA+E+ +
Sbjct: 42 PECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSI 78
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 25.7 bits (57), Expect = 2.5
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 49 HWIVPGGG----VE-PEEEPAATALREVAEEAGVL 78
W VP G ++ + E A + GVL
Sbjct: 346 EWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVL 380
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics,
PSI-2, P structure initiative; 2.50A {Streptomyces
coelicolor} SCOP: a.4.1.9 a.121.1.1
Length = 216
Score = 25.3 bits (55), Expect = 3.0
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 60 EEEPAATALREVAEEAGV 77
+A +L +A+ G+
Sbjct: 31 TAGASALSLNAIAKRMGM 48
>3ppb_A Putative TETR family transcription regulator; DNA-binding,
helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical
bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Length = 195
Score = 24.6 bits (54), Expect = 4.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 64 AATALREVAEEAGV 77
T+ +A EAGV
Sbjct: 28 HGTSTATIAREAGV 41
>2g3b_A Putative TETR-family transcriptional regulator; transcription
regulator, structural genomics, P protein structure
initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP:
a.4.1.9 a.121.1.1
Length = 208
Score = 24.7 bits (54), Expect = 5.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 64 AATALREVAEEAGV 77
+ +VAE AGV
Sbjct: 22 RGLRVNDVAEVAGV 35
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding,
transcription regulation, transcription regula; HET:
MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Length = 206
Score = 24.7 bits (54), Expect = 5.3
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 64 AATALREVAEEAGV 77
++AE A V
Sbjct: 36 GRGGHADIAEIAQV 49
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI,
protein S initiative, midwest center for structural
genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9
a.121.1.1
Length = 205
Score = 24.7 bits (54), Expect = 5.5
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 64 AATALREVAEEAGV 77
T +++V EE+G
Sbjct: 31 ELTTMKDVVEESGF 44
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein,
transcription regulation, DNA-binding, family,
transcription, transcriptional regulator; 2.10A
{Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Length = 186
Score = 24.6 bits (54), Expect = 5.9
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 64 AATALREVAEEAGV 77
T+++E+A+EA V
Sbjct: 26 EGTSIQEIAKEAKV 39
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET:
MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A
2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Length = 185
Score = 24.7 bits (54), Expect = 5.9
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 60 EEEPAATALREVAEEAGV 77
E + +AE G+
Sbjct: 19 EYSLETLSYDSLAEATGL 36
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics
initiative, structural genomics; 1.20A {Pyrococcus
horikoshii} PDB: 2d3k_A
Length = 121
Score = 24.4 bits (53), Expect = 6.0
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 21 CPTMALFITTACVMSTLILLVTSSRRPEHWIVPGG---GVEPEEEPAATALREVAEEAGV 77
+A + V + E W G V+ E E L+ AE+ G+
Sbjct: 21 KGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEEELFKLKAEAEKLGL 80
Query: 78 LGKLGRSLGVFEVRP 92
L R G+ E+ P
Sbjct: 81 PNALIRDAGLTEIPP 95
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 24.6 bits (53), Expect = 6.3
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 8 HNHGLCHVDSVRRCPTMALFITTACVMSTLILLVTSSRRPEHW 50
H GL H DS T + S L TS + W
Sbjct: 153 HLLGLSHDDSKFCEETFGSTEDKRLMSSIL----TSIDASKPW 191
>1rhc_A F420-dependent alcohol dehydrogenase; (alpha, beta)8 barrel,
oxidoreductase; HET: F42; 1.80A {Methanoculleus
thermophilus} SCOP: c.1.16.3
Length = 330
Score = 24.7 bits (54), Expect = 6.6
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 49 HWIVPGGGVEPEEEPAATALREVAEEAG 76
H + + E A EAG
Sbjct: 189 HLMTVAAAPSTLKNVTIPKFEEGAREAG 216
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix,
dimer, structural genomics, PSI, protein structure
initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9
a.121.1.1 PDB: 3loc_A*
Length = 212
Score = 24.3 bits (53), Expect = 6.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 64 AATALREVAEEAGV 77
T L ++AE AGV
Sbjct: 37 HGTRLEQIAELAGV 50
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative
TETR transcriptional regulator, struct genomics; HET:
STE; 1.79A {Jannaschia SP}
Length = 198
Score = 24.4 bits (53), Expect = 6.9
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 60 EEEPAATALREVAEEAGV 77
E A+ RE+A +A
Sbjct: 27 AEGLASLRARELARQADC 44
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport,
ATP synthesis, phosphoprotein, UBL conjugation, transit
peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A
2jmx_A
Length = 190
Score = 24.2 bits (53), Expect = 7.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 65 ATALREVAEEAGVLGKLGRSLGVF 88
ATAL A + L ++ + L
Sbjct: 19 ATALYSAASKQNKLEQVEKELLRV 42
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of
basic residues, extracellular matrix, glycoprotein,
hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens}
PDB: 3b2z_A
Length = 316
Score = 24.5 bits (53), Expect = 7.3
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 8 HNHGLCHVDSVRRCPTMALFITTACVMSTLILLVTSSRRPEHW 50
H + H +S T+ VM+ ++ E W
Sbjct: 153 HVFNMLHDNSKPCISLNGPLSTSRHVMAPVM---AHVDPEEPW 192
>3on2_A Probable transcriptional regulator; protein structure initiative,
PSI-2, structural genomics, MI center for structural
genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus
jostii}
Length = 199
Score = 24.4 bits (53), Expect = 7.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 60 EEEPAATALREVAEEAGV 77
++ +LR++A EAGV
Sbjct: 27 KDGVDGLSLRQLAREAGV 44
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.1 bits (51), Expect = 7.7
Identities = 4/16 (25%), Positives = 7/16 (43%), Gaps = 1/16 (6%)
Query: 58 EPEEEPAATALREVAE 73
+ P A A++ E
Sbjct: 33 ADDSAP-ALAIKATME 47
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding
motif, structural genomics, PSI-2, Pro structure
initiative; 1.70A {Rhodococcus SP}
Length = 194
Score = 24.3 bits (53), Expect = 8.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 64 AATALREVAEEAGV 77
A +R++A EAG
Sbjct: 29 EAANMRDIATEAGY 42
>2gfn_A HTH-type transcriptional regulator PKSA related P;
transcriptional regulato PSI-2, regulatory protein,
structural genomics, protein STR initiative; 1.90A
{Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Length = 209
Score = 24.2 bits (53), Expect = 8.0
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 64 AATALREVAEEAGV 77
+A R VAEE+G
Sbjct: 28 SAVTTRAVAEESGW 41
>2xdn_A HTH-type transcriptional regulator TTGR; transcription
regulation, TETR family; 2.20A {Pseudomonas putida}
PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Length = 210
Score = 24.3 bits (53), Expect = 8.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 64 AATALREVAEEAGV 77
A T L ++AE AGV
Sbjct: 30 ARTTLADIAELAGV 43
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix
hydrolase, PSI-2, protein structure initiative; 1.89A
{Thermotoga maritima}
Length = 211
Score = 24.3 bits (52), Expect = 8.2
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 51 IVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV 87
+ G G P E REV EE V + LG+
Sbjct: 107 VREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGL 143
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P
structure initiative, midwest center for structural
genomic binding; 2.20A {Pseudomonas aeruginosa}
Length = 215
Score = 24.3 bits (53), Expect = 8.2
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 64 AATALREVAEEAGV 77
++R++ EAGV
Sbjct: 33 QGASVRKICAEAGV 46
>2qtq_A Transcriptional regulator, TETR family; transcription regulator,
DNA/RNA-binding 3-helical bundle FO turn helix motif,
HTH motif; HET: MSE; 1.85A {Novosphingobium
aromaticivorans} PDB: 2rha_A*
Length = 213
Score = 24.2 bits (53), Expect = 8.3
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 64 AATALREVAEEAGV 77
+L E++ +G+
Sbjct: 35 VDISLSELSLRSGL 48
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription
regulation, bacterial regulatory DNA/RNA-binding
3-helical bundle fold; HET: MSE PE8; 2.55A
{Archaeoglobus fulgidus}
Length = 170
Score = 24.1 bits (52), Expect = 8.6
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 64 AATALREVAEEAGV 77
++ E+A EA V
Sbjct: 23 HEVSIEEIAREAKV 36
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio
parahaemolytic structural genomics, PSI-2, protein
structure initiative; HET: MSE; 2.20A {Vibrio
parahaemolyticus}
Length = 196
Score = 24.2 bits (53), Expect = 8.6
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 64 AATALREVAEEAGV 77
+++++A EAGV
Sbjct: 30 QGLSMQKLANEAGV 43
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl,
isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2
PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A*
1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A
2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Length = 190
Score = 23.9 bits (52), Expect = 9.4
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 54 GGGVEPEEEPAATALREVAEEAGV 77
G + E +R E GV
Sbjct: 67 CGHPQLGESNEDAVIRRCRYELGV 90
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric
sandwich hydrolase; 1.66A {Nesterenkonia SP}
Length = 283
Score = 24.1 bits (53), Expect = 9.4
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 58 EPEEEPAATALREVAEEAGV 77
+ + A + LR +A + G+
Sbjct: 78 AEQVDAARSRLRGIARDRGI 97
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical
bundle, tetracyclin repressor-like structural genomics;
2.60A {Syntrophus aciditrophicus}
Length = 216
Score = 23.9 bits (52), Expect = 9.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 64 AATALREVAEEAGV 77
AAT + E+A GV
Sbjct: 29 AATTMAEIAASVGV 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.424
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,503,563
Number of extensions: 79477
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 151
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)